Query 029804
Match_columns 187
No_of_seqs 119 out of 842
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:55:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03023 Expansin-like B1; Pro 100.0 8.3E-55 1.8E-59 367.9 21.1 168 1-169 79-247 (247)
2 PLN00193 expansin-A; Provision 100.0 2.6E-48 5.5E-53 329.9 18.8 153 1-168 85-256 (256)
3 PLN00050 expansin A; Provision 100.0 9.2E-48 2E-52 325.2 18.7 152 1-168 80-247 (247)
4 PLN00115 pollen allergen group 100.0 8.1E-29 1.8E-33 188.8 11.6 95 62-168 21-118 (118)
5 PF01357 Pollen_allerg_1: Poll 99.9 1.4E-27 3.1E-32 171.5 10.4 80 70-153 1-82 (82)
6 COG4305 Endoglucanase C-termin 99.9 4E-23 8.8E-28 166.0 14.3 140 13-170 88-232 (232)
7 smart00837 DPBB_1 Rare lipopro 99.5 9.5E-15 2.1E-19 106.1 5.3 51 1-58 21-87 (87)
8 PLN03024 Putative EG45-like do 99.3 1.9E-12 4.1E-17 99.9 5.8 52 1-59 67-124 (125)
9 PF03330 DPBB_1: Rare lipoprot 99.2 9.1E-12 2E-16 87.9 3.5 43 9-58 33-78 (78)
10 PF00967 Barwin: Barwin family 97.3 0.00014 3E-09 55.2 2.7 46 13-63 74-119 (119)
11 COG0797 RlpA Lipoproteins [Cel 96.3 0.008 1.7E-07 51.0 5.5 47 11-64 131-178 (233)
12 TIGR00413 rlpA rare lipoprotei 95.8 0.024 5.1E-07 47.4 6.0 47 12-65 48-95 (208)
13 PF07249 Cerato-platanin: Cera 93.3 0.16 3.4E-06 39.0 4.5 43 13-62 71-113 (119)
14 PF03404 Mo-co_dimer: Mo-co ox 89.1 1.5 3.1E-05 33.9 6.1 24 92-115 37-61 (131)
15 PRK10672 rare lipoprotein A; P 89.1 0.88 1.9E-05 41.1 5.5 44 11-61 127-171 (361)
16 cd02110 SO_family_Moco_dimer S 84.2 2.3 5.1E-05 37.5 5.5 46 92-137 233-288 (317)
17 cd02114 bact_SorA_Moco sulfite 72.8 6.6 0.00014 35.5 4.9 23 92-114 285-307 (367)
18 cd02113 bact_SoxC_Moco bacteri 71.5 19 0.0004 32.1 7.3 24 92-115 235-258 (326)
19 PLN00177 sulfite oxidase; Prov 64.2 18 0.00038 33.1 5.8 23 92-114 293-315 (393)
20 cd02111 eukary_SO_Moco molybdo 63.7 20 0.00044 32.3 6.1 24 92-115 273-296 (365)
21 PF06988 NifT: NifT/FixU prote 49.8 25 0.00054 24.2 3.2 36 96-134 25-63 (64)
22 cd02112 eukary_NR_Moco molybdo 49.8 78 0.0017 28.8 7.5 20 96-115 301-320 (386)
23 TIGR02934 nifT_nitrog probable 46.9 95 0.0021 21.5 7.0 49 85-136 14-65 (67)
24 cd02854 Glycogen_branching_enz 42.7 63 0.0014 23.5 4.7 46 98-147 17-76 (99)
25 PLN02252 nitrate reductase [NA 39.5 84 0.0018 31.8 6.5 24 92-115 369-392 (888)
26 cd02859 AMPKbeta_GBD_like AMP- 38.6 1.1E+02 0.0023 21.0 5.3 47 97-149 12-62 (79)
27 PF12863 DUF3821: Domain of un 37.5 2E+02 0.0043 24.1 7.5 53 25-98 46-98 (209)
28 PRK10564 maltose regulon perip 36.5 1.9E+02 0.004 25.8 7.5 84 55-173 47-132 (303)
29 PF10417 1-cysPrx_C: C-termina 33.0 25 0.00054 21.5 1.1 10 151-160 11-20 (40)
30 cd02861 E_set_proteins_like E 32.9 85 0.0018 21.5 4.0 44 98-146 14-60 (82)
31 COG3895 Predicted periplasmic 32.4 52 0.0011 25.0 2.9 28 131-165 54-81 (112)
32 PF04620 FlaA: Flagellar filam 26.9 2E+02 0.0044 24.1 5.9 43 69-114 109-151 (217)
33 PF02922 CBM_48: Carbohydrate- 25.7 2E+02 0.0043 19.3 4.9 48 97-147 22-79 (85)
34 TIGR02588 conserved hypothetic 24.4 1.1E+02 0.0023 23.7 3.4 24 81-105 50-73 (122)
35 PF08770 SoxZ: Sulphur oxidati 22.0 1.1E+02 0.0024 22.4 3.1 57 81-148 40-96 (100)
No 1
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=8.3e-55 Score=367.88 Aligned_cols=168 Identities=43% Similarity=0.900 Sum_probs=159.0
Q ss_pred CeeCCCCCCcCCCcEEEEecCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccccCCcEEEEEecCCCC
Q 029804 1 MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQK 80 (187)
Q Consensus 1 v~C~~~~~C~~~~v~V~vtD~Cp~~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~~g~ni~~~v~~gS~~ 80 (187)
|||.++++|++++|+|+|||+||.++.|||||.+||.+||.+|++++|+++|+|+|+||||||.++|++|+|+|+++|++
T Consensus 79 irC~~~~~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~ 158 (247)
T PLN03023 79 VRCKAPNLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRF 158 (247)
T ss_pred eecCCCCccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999998999999999966
Q ss_pred CcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCCCCcceEEEEEEEeCCCC-eEEEEccccCCCCCCC
Q 029804 81 PNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDG-KWIWAKNVLPADWKPG 159 (187)
Q Consensus 81 ~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~l~gPlsvRvt~t~~~~G-~~iv~~~vip~~w~~G 159 (187)
++||+++|.|++|++||++||||++++..|++|+|+|||+|+++.+|+|||+||+++++ .+| +++++.||||++|++|
T Consensus 159 p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~Gp~slrf~v~~-~~g~~~vva~nViPa~Wk~G 237 (247)
T PLN03023 159 PDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSG-SAGQTWVQAKNVIPSDWKAG 237 (247)
T ss_pred CceEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCCceeEEEEEEe-CCCcEEEEECceeCCCCCCC
Confidence 99999999999999999999999987779999999999999999999999999998876 466 4599999999999999
Q ss_pred cEEecCcccc
Q 029804 160 MIYNSGVQIT 169 (187)
Q Consensus 160 ~~y~t~vqf~ 169 (187)
++|++++||+
T Consensus 238 ~TY~s~vq~~ 247 (247)
T PLN03023 238 VAYDSNIQLD 247 (247)
T ss_pred CEEecccccC
Confidence 9999999995
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=2.6e-48 Score=329.86 Aligned_cols=153 Identities=24% Similarity=0.508 Sum_probs=140.8
Q ss_pred CeeC---CCCCCcCC-CcEEEEecCCCC--------------CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEe
Q 029804 1 MRCK---NPTLCSGR-GTRVILTDLNHS--------------NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVP 62 (187)
Q Consensus 1 v~C~---~~~~C~~~-~v~V~vtD~Cp~--------------~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~ 62 (187)
|||. ++++|..+ +|+|+|||+||+ ++.|||||++||.+||. ++.|+|+|+|||||
T Consensus 85 v~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVp 157 (256)
T PLN00193 85 IMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVP 157 (256)
T ss_pred EECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEec
Confidence 5784 57789765 799999999985 57899999999999998 89999999999999
Q ss_pred ccccCCcEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCCCCc-ceEEEEEEEeCC
Q 029804 63 CEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSGY 141 (187)
Q Consensus 63 C~~~g~ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~l~g-PlsvRvt~t~~~ 141 (187)
|.++| +|+|+|++ ++||++++|.|++|++||++|+||+++ +.|++|+|+||++|+++.+|.+ ||+||||+ .
T Consensus 158 C~~~G-~i~f~v~g---n~y~~~vlv~nv~G~gdV~~v~Ik~~~-~~W~~M~R~wGa~W~~~~~l~g~plsfRvts---~ 229 (256)
T PLN00193 158 CKKHG-GVRFTING---RDYFELVLISNVGGAGSIQSVSIKGSK-TGWMAMSRNWGANWQSNAYLDGQSLSFKVTT---T 229 (256)
T ss_pred cccCC-CcEEEEcC---CccEEEEEEEEeCCCccEEEEEEecCC-CCeeECcccccceeEecCCCCCCCEEEEEEE---c
Confidence 99999 99999984 489999999999999999999999875 5899999999999999987755 99999987 7
Q ss_pred CCeEEEEccccCCCCCCCcEEecCccc
Q 029804 142 DGKWIWAKNVLPADWKPGMIYNSGVQI 168 (187)
Q Consensus 142 ~G~~iv~~~vip~~w~~G~~y~t~vqf 168 (187)
+|+++++.||||++|++|++|++.+||
T Consensus 230 ~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 230 DGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred CCeEEEECceeCCCCCCCCeEecCccC
Confidence 899999999999999999999999998
No 3
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=9.2e-48 Score=325.18 Aligned_cols=152 Identities=28% Similarity=0.563 Sum_probs=139.6
Q ss_pred CeeCC-CCCCcCCCcEEEEecCCCC--------------CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccc
Q 029804 1 MRCKN-PTLCSGRGTRVILTDLNHS--------------NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEY 65 (187)
Q Consensus 1 v~C~~-~~~C~~~~v~V~vtD~Cp~--------------~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~ 65 (187)
|||.+ +.+|.+++|+|+|||+||+ ++.|||||++||.+||. +++|+|+|+||||||.+
T Consensus 80 V~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~ 152 (247)
T PLN00050 80 IKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRK 152 (247)
T ss_pred EEcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcC
Confidence 68865 4589988999999999995 57999999999999999 89999999999999999
Q ss_pred cCCcEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCCCCc-ceEEEEEEEeCCCCe
Q 029804 66 KNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNG-ALQFRFVVTSGYDGK 144 (187)
Q Consensus 66 ~g~ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~l~g-PlsvRvt~t~~~~G~ 144 (187)
+| ||+|+|+++ +||++++|.|++|+++|++|+||+++ +.|++|+|+|||+|+++.++.+ ||+||||+ .+|+
T Consensus 153 ~G-~i~f~v~g~---sy~~~vlv~nv~G~gdi~~V~ikg~~-~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~---~~G~ 224 (247)
T PLN00050 153 SG-GIRFTINGH---SYFNLVLITNVGGAGDIVAVSIKGSK-SNWQAMSRNWGQNWQSNSYLNGQALSFKVTT---SDGR 224 (247)
T ss_pred CC-CeEEEEcCC---ceeEEEEEEEcCCCccEEEEEEecCC-CCeeECccccCceeEccCCCCCCcEEEEEEe---cCCc
Confidence 99 999999863 59999999999999999999999864 5899999999999999887755 99999987 7899
Q ss_pred EEEEccccCCCCCCCcEEecCccc
Q 029804 145 WIWAKNVLPADWKPGMIYNSGVQI 168 (187)
Q Consensus 145 ~iv~~~vip~~w~~G~~y~t~vqf 168 (187)
++++.||||++|++|++|++. ||
T Consensus 225 ~~~~~~V~Pa~W~~G~ty~~~-~f 247 (247)
T PLN00050 225 TVISNNAAPSNWAFGQTYTGM-QF 247 (247)
T ss_pred EEEECceeCCCCCCCCeEecC-cC
Confidence 999999999999999999994 87
No 4
>PLN00115 pollen allergen group 3; Provisional
Probab=99.96 E-value=8.1e-29 Score=188.78 Aligned_cols=95 Identities=20% Similarity=0.527 Sum_probs=85.6
Q ss_pred eccccCCcEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeE-EcccCCCCeeeeCC--CCCcceEEEEEEE
Q 029804 62 PCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWG-YMSRNYGAVWDTSR--VPNGALQFRFVVT 138 (187)
Q Consensus 62 ~C~~~g~ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~-~m~r~~ga~W~~~~--~l~gPlsvRvt~t 138 (187)
.|. .+|+|+|++||+ +|||++++ | ++|.+||||++|+..|+ +|+|+||++|+++. +|+|||+||+|+
T Consensus 21 ~~g---~~v~F~V~~gSn-p~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~- 90 (118)
T PLN00115 21 SCA---TEVTFKVGKGSS-STSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLV- 90 (118)
T ss_pred hcC---CceEEEECCCCC-cceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEEE-
Confidence 475 489999999995 99997765 4 36999999999878999 99999999999864 789999999997
Q ss_pred eCCCCeEEEEccccCCCCCCCcEEecCccc
Q 029804 139 SGYDGKWIWAKNVLPADWKPGMIYNSGVQI 168 (187)
Q Consensus 139 ~~~~G~~iv~~~vip~~w~~G~~y~t~vqf 168 (187)
.+|++++++||||++|++|++|++++||
T Consensus 91 --~~G~~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 91 --KGGGYRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred --eCCCEEEECceECCCCCCCCEEeccccC
Confidence 6899999999999999999999999997
No 5
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.95 E-value=1.4e-27 Score=171.51 Aligned_cols=80 Identities=43% Similarity=0.717 Sum_probs=68.1
Q ss_pred EEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeC-CCCCcceEEEEEEEeCCC-CeEEE
Q 029804 70 LAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS-RVPNGALQFRFVVTSGYD-GKWIW 147 (187)
Q Consensus 70 i~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~-~~l~gPlsvRvt~t~~~~-G~~iv 147 (187)
|+|+|+++| ++|||+|+|.|++|+++|++||||++++.+|++|+|+|||+|+++ +++++||+||||+ .+ |++++
T Consensus 1 v~f~V~~gS-~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rvts---~~~G~~vv 76 (82)
T PF01357_consen 1 VRFTVKGGS-NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRVTS---GDSGQTVV 76 (82)
T ss_dssp EEEEE-TT--BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEEEE---TTTSEEEE
T ss_pred CEEEECCCC-CCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEEEE---cCCCeEEE
Confidence 689999999 599999999999999999999999999888999999999999998 7889999999986 56 99999
Q ss_pred EccccC
Q 029804 148 AKNVLP 153 (187)
Q Consensus 148 ~~~vip 153 (187)
++||||
T Consensus 77 ~~nViP 82 (82)
T PF01357_consen 77 ADNVIP 82 (82)
T ss_dssp EEEEE-
T ss_pred EecccC
Confidence 999998
No 6
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.90 E-value=4e-23 Score=165.99 Aligned_cols=140 Identities=24% Similarity=0.343 Sum_probs=118.7
Q ss_pred CcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccccCCcEEEEEecCCCCCcEEEEEEEEe
Q 029804 13 GTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQ 91 (187)
Q Consensus 13 ~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~~g~ni~~~v~~gS~~~~w~av~v~n~ 91 (187)
.++|-|||.-|+ .++.||||+.||.+|++ .+.|.|+|+||.|+-+..| |+.++|||||+ .||.++||+|+
T Consensus 88 ~TTVYVTDlYPegasGaLDLSpNAFakIGn-------m~qGrIpvqWrvv~aPvtG-N~~YRiKeGSs-~WWAAIQVRnH 158 (232)
T COG4305 88 KTTVYVTDLYPEGASGALDLSPNAFAKIGN-------MKQGRIPVQWRVVKAPVTG-NFTYRIKEGSS-RWWAAIQVRNH 158 (232)
T ss_pred ceEEEEecccccccccccccChHHHhhhcc-------hhcCccceeEEEecccccc-cEEEEEecCCc-cceeeeeeecc
Confidence 479999999998 57999999999999999 9999999999999999999 99999999997 99999999998
Q ss_pred CCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCCCCcceEEEEEEEeCCCCeEEEEccccCCCCCC--CcEEe--cCcc
Q 029804 92 GGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKP--GMIYN--SGVQ 167 (187)
Q Consensus 92 ~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~l~gPlsvRvt~t~~~~G~~iv~~~vip~~w~~--G~~y~--t~vq 167 (187)
. .+|.++|+.++| .|..|....+|.|.-.+.-.+||++|+|+ .-|+.++-. +|.--+. -+.|. ..+|
T Consensus 159 ~--yPV~KlE~~qdg--~WinlpK~dYNhFVgT~LG~~pL~~RmTD---IRG~~l~Dt--lP~Lpk~asSKaY~V~G~VQ 229 (232)
T COG4305 159 K--YPVMKLEYEQDG--KWINLPKMDYNHFVGTNLGTGPLKVRMTD---IRGKVLKDT--LPKLPKSASSKAYTVPGHVQ 229 (232)
T ss_pred c--CceEEEEEecCC--eEeeccccccceeeccccCCCceEEEEee---cccceeecc--cccccccccCCceeecceee
Confidence 7 789999999864 89999999887665555568999999998 889887754 5533222 33343 5678
Q ss_pred ccc
Q 029804 168 ITD 170 (187)
Q Consensus 168 f~~ 170 (187)
|++
T Consensus 230 FsE 232 (232)
T COG4305 230 FSE 232 (232)
T ss_pred cCC
Confidence 863
No 7
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.53 E-value=9.5e-15 Score=106.10 Aligned_cols=51 Identities=27% Similarity=0.529 Sum_probs=45.1
Q ss_pred CeeC-CCCCCcCC-CcEEEEecCCCC--------------CCCceecCHHHHHHhhcCCCCcccccccEEEEEE
Q 029804 1 MRCK-NPTLCSGR-GTRVILTDLNHS--------------NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEY 58 (187)
Q Consensus 1 v~C~-~~~~C~~~-~v~V~vtD~Cp~--------------~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~y 58 (187)
|||. ++++|.++ +|+|+|||+||. ++.|||||++||.+||. ++.|+|+|+|
T Consensus 21 v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~-------~~~Gvi~v~y 87 (87)
T smart00837 21 IMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ-------YKAGIVPVKY 87 (87)
T ss_pred EEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh-------hcCCEEeeEC
Confidence 5785 56789875 799999999995 47899999999999999 8999999997
No 8
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.33 E-value=1.9e-12 Score=99.90 Aligned_cols=52 Identities=27% Similarity=0.606 Sum_probs=45.8
Q ss_pred CeeCCC-----CCCcCCCcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEE
Q 029804 1 MRCKNP-----TLCSGRGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYK 59 (187)
Q Consensus 1 v~C~~~-----~~C~~~~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yr 59 (187)
|||.++ .+|.+.+|+|+|||.||+ ...|||||++||.+||+ +++|+|+|+|.
T Consensus 67 V~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~-------~~aG~v~V~y~ 124 (125)
T PLN03024 67 VKCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIAN-------PVAGIINIDYI 124 (125)
T ss_pred EEECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcC-------ccCCEEEEEEe
Confidence 578654 489988999999999994 56799999999999999 88999999996
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.21 E-value=9.1e-12 Score=87.94 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=39.2
Q ss_pred CcC--CCcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEE
Q 029804 9 CSG--RGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEY 58 (187)
Q Consensus 9 C~~--~~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~y 58 (187)
|.. .+|+|+|+|.||+ +..|||||+.||.+||. ++.|+|+|+|
T Consensus 33 ~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~-------~~~G~i~V~w 78 (78)
T PF03330_consen 33 CKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALAD-------PDAGVIPVEW 78 (78)
T ss_dssp BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBS-------TTCSSEEEEE
T ss_pred EEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCC-------CCceEEEEEC
Confidence 776 7899999999996 78999999999999999 8999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=97.35 E-value=0.00014 Score=55.23 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=34.2
Q ss_pred CcEEEEecCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEec
Q 029804 13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPC 63 (187)
Q Consensus 13 ~v~V~vtD~Cp~~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C 63 (187)
.++|.|+|+|+.+ +|||+..+|.+|-..| +=...|.+.|.|..|.|
T Consensus 74 ~~~~RIVDqCsnG--GLDld~~vF~~iDtdG---~G~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 74 QVTVRIVDQCSNG--GLDLDPTVFNQIDTDG---QGYAQGHLIVDYEFVDC 119 (119)
T ss_dssp EEEEEEEEE-SSS--SEES-SSSHHHH-SSS---HHHHHTEEEEEEEEE--
T ss_pred EEEEEEEEcCCCC--CcccChhHHhhhccCC---cccccceEEEEEEEEcC
Confidence 4788899999876 9999999999996522 11578999999999998
No 11
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=96.33 E-value=0.008 Score=50.96 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=41.9
Q ss_pred CCCcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEecc
Q 029804 11 GRGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCE 64 (187)
Q Consensus 11 ~~~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~ 64 (187)
+.+|+|.|.|.+|. ..-.+|||..|+.+|+. .+.|+.+|..+++.+.
T Consensus 131 grsvvVRINDRGPf~~gRiIDlS~aAA~~l~~-------~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 131 GRSVVVRINDRGPFVSGRIIDLSKAAADKLGM-------IRSGVAKVRIEVLGVA 178 (233)
T ss_pred CcEEEEEEeCCCCCCCCcEeEcCHHHHHHhCC-------ccCceEEEEEEEeccc
Confidence 35699999999997 45689999999999998 8999999999999875
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=95.82 E-value=0.024 Score=47.38 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=41.8
Q ss_pred CCcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccc
Q 029804 12 RGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEY 65 (187)
Q Consensus 12 ~~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~ 65 (187)
..|+|.|.|.+|. +.--+|||..|+.+|+. ...|+.+|+.+.+....
T Consensus 48 rsviVrVnDRGPf~~gRiIDLS~aAA~~Lg~-------~~~G~a~V~vevl~~~~ 95 (208)
T TIGR00413 48 RSVIVRINDRGPFSDDRIIDLSHAAAREIGL-------ISRGVGQVRIEVLHVAK 95 (208)
T ss_pred CEEEEEEeCCCCCCCCCEEECCHHHHHHcCC-------CcCceEEEEEEEEecCC
Confidence 4689999999997 56689999999999998 89999999999998755
No 13
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=93.29 E-value=0.16 Score=39.01 Aligned_cols=43 Identities=35% Similarity=0.484 Sum_probs=29.1
Q ss_pred CcEEEEecCCCCCCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEe
Q 029804 13 GTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVP 62 (187)
Q Consensus 13 ~v~V~vtD~Cp~~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~ 62 (187)
+|.|+..|.-. ..|+|+.+||..|.. |++ ...|.|+++|++|+
T Consensus 71 si~vlaID~a~---~gfnis~~A~n~LT~-g~a---~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 71 SIYVLAIDHAG---GGFNISLDAMNDLTN-GQA---VELGRVDATYTQVD 113 (119)
T ss_dssp EEEEEEEEE-S---SSEEE-HHHHHHHHT-S-C---CCC-EEE-EEEEE-
T ss_pred EEEEEEEecCC---CcccchHHHHHHhcC-Ccc---cceeEEEEEEEEcC
Confidence 46777777643 469999999999987 333 34699999999996
No 14
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=89.11 E-value=1.5 Score=33.95 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=17.5
Q ss_pred CCCc-ceEEEEEEEcCCCCeEEccc
Q 029804 92 GGQT-EMVAMDVAQVGSSNWGYMSR 115 (187)
Q Consensus 92 ~G~g-~I~~VeVk~~g~~~W~~m~r 115 (187)
+|.+ .|.+|||+.+++.+|++...
T Consensus 37 ~g~g~~I~rVEVS~DgG~tW~~A~l 61 (131)
T PF03404_consen 37 SGGGRGIARVEVSTDGGKTWQEATL 61 (131)
T ss_dssp -STT--EEEEEEESSTTSSEEE-EE
T ss_pred eCCCcceEEEEEEeCCCCCcEEeEe
Confidence 3445 89999999999889997544
No 15
>PRK10672 rare lipoprotein A; Provisional
Probab=89.06 E-value=0.88 Score=41.10 Aligned_cols=44 Identities=20% Similarity=0.049 Sum_probs=35.8
Q ss_pred CCCcEEEEecCCCC-CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEE
Q 029804 11 GRGTRVILTDLNHS-NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRV 61 (187)
Q Consensus 11 ~~~v~V~vtD~Cp~-~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV 61 (187)
+..|+|.|.|.+|. +.--+|||..|+.+|+. ...+.|.|++-.|
T Consensus 127 grsvvVrVnDRGP~~~gRiiDLS~aAA~~Lg~-------~~~~~V~ve~i~v 171 (361)
T PRK10672 127 GRMIVVRINDRGPYGPGRVIDLSRAAADRLNT-------SNNTKVRIDPIIV 171 (361)
T ss_pred CcEEEEEEeCCCCCCCCCeeEcCHHHHHHhCC-------CCCceEEEEEEee
Confidence 34689999999997 55688999999999997 5567777777666
No 16
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=84.24 E-value=2.3 Score=37.48 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=29.3
Q ss_pred CCCcceEEEEEEEcCCCCeEEcccCCCC-------eeeeC-CCCCc--ceEEEEEE
Q 029804 92 GGQTEMVAMDVAQVGSSNWGYMSRNYGA-------VWDTS-RVPNG--ALQFRFVV 137 (187)
Q Consensus 92 ~G~g~I~~VeVk~~g~~~W~~m~r~~ga-------~W~~~-~~l~g--PlsvRvt~ 137 (187)
+|...|++|||+.+|+.+|++..-.... .|++. .+..| -+.+|.++
T Consensus 233 ~g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D 288 (317)
T cd02110 233 SGGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATD 288 (317)
T ss_pred cCCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEEC
Confidence 3445799999999998899976543211 44444 22245 46666665
No 17
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=72.81 E-value=6.6 Score=35.49 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=18.7
Q ss_pred CCCcceEEEEEEEcCCCCeEEcc
Q 029804 92 GGQTEMVAMDVAQVGSSNWGYMS 114 (187)
Q Consensus 92 ~G~g~I~~VeVk~~g~~~W~~m~ 114 (187)
+|.+.|++|||+.+|+.+|++..
T Consensus 285 ~G~~~I~rVEVS~DgG~tW~~A~ 307 (367)
T cd02114 285 DGGSGIRRVDVSADGGDSWTQAT 307 (367)
T ss_pred cCCCCEEEEEEEeCCCCcceEeE
Confidence 34467999999999988999743
No 18
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=71.53 E-value=19 Score=32.13 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.4
Q ss_pred CCCcceEEEEEEEcCCCCeEEccc
Q 029804 92 GGQTEMVAMDVAQVGSSNWGYMSR 115 (187)
Q Consensus 92 ~G~g~I~~VeVk~~g~~~W~~m~r 115 (187)
+|.+.|..|||+.+++.+|+...-
T Consensus 235 sG~~~I~rVEVS~DgG~tW~~A~l 258 (326)
T cd02113 235 SGRGRIRRVDVSFDGGRTWQDARL 258 (326)
T ss_pred CCCCCEEEEEEEcCCCCCceECcc
Confidence 455679999999999889997544
No 19
>PLN00177 sulfite oxidase; Provisional
Probab=64.16 E-value=18 Score=33.09 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.2
Q ss_pred CCCcceEEEEEEEcCCCCeEEcc
Q 029804 92 GGQTEMVAMDVAQVGSSNWGYMS 114 (187)
Q Consensus 92 ~G~g~I~~VeVk~~g~~~W~~m~ 114 (187)
+|...|..|||+.+|+.+|+...
T Consensus 293 ggg~~I~rVEVS~DgG~tW~~A~ 315 (393)
T PLN00177 293 GGGRGIERVDISVDGGKTWVEAS 315 (393)
T ss_pred CCCccEEEEEEEcCCCCCceeee
Confidence 33336999999999988999654
No 20
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=63.73 E-value=20 Score=32.32 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=19.0
Q ss_pred CCCcceEEEEEEEcCCCCeEEccc
Q 029804 92 GGQTEMVAMDVAQVGSSNWGYMSR 115 (187)
Q Consensus 92 ~G~g~I~~VeVk~~g~~~W~~m~r 115 (187)
+|...|++|||+.+|+.+|+...-
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~l 296 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAEL 296 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCCc
Confidence 343479999999999889997543
No 21
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=49.83 E-value=25 Score=24.16 Aligned_cols=36 Identities=6% Similarity=-0.069 Sum_probs=17.4
Q ss_pred ceEEEEEEEcCCCCeEEcccCCCCeeeeC---CCCCcceEEE
Q 029804 96 EMVAMDVAQVGSSNWGYMSRNYGAVWDTS---RVPNGALQFR 134 (187)
Q Consensus 96 ~I~~VeVk~~g~~~W~~m~r~~ga~W~~~---~~l~gPlsvR 134 (187)
+|.++| +.+..+.|..|.+.| .|.++ .+++.|.+||
T Consensus 25 ~Vv~~E-~~~~wGG~v~L~NGw--~l~lp~~~~~~~lPiTve 63 (64)
T PF06988_consen 25 PVVSME-KPELWGGEVTLANGW--ELYLPPLPADTRLPITVE 63 (64)
T ss_dssp EEEEES-SSSS-SSEEEETTS---EEE----SSS-SS-EEE-
T ss_pred ceeeee-ccCccCCEEEECCcC--EEEeCCCCCCCCCCeEee
Confidence 344444 333445788888765 56554 3346688776
No 22
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=49.80 E-value=78 Score=28.84 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=17.2
Q ss_pred ceEEEEEEEcCCCCeEEccc
Q 029804 96 EMVAMDVAQVGSSNWGYMSR 115 (187)
Q Consensus 96 ~I~~VeVk~~g~~~W~~m~r 115 (187)
.|++|||+.+|+.+|+...-
T Consensus 301 ~I~rVeVS~DgG~tW~~A~L 320 (386)
T cd02112 301 RVTRVEVSLDDGKSWKLASI 320 (386)
T ss_pred cEEEEEEEcCCCCCceeCCC
Confidence 69999999999889997543
No 23
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=46.92 E-value=95 Score=21.48 Aligned_cols=49 Identities=6% Similarity=0.057 Sum_probs=28.9
Q ss_pred EEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeC---CCCCcceEEEEE
Q 029804 85 AVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTS---RVPNGALQFRFV 136 (187)
Q Consensus 85 av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~---~~l~gPlsvRvt 136 (187)
.+.|---.=.-+|.++| +.+..+.|..|.+.| .|.++ .+++.|.+||..
T Consensus 14 ~~YvpKKDLEE~Vv~~e-~~~~WGG~v~L~NGw--~l~lp~l~~~~~LPiTveAk 65 (67)
T TIGR02934 14 SAYVPKKDLEEVIVSVE-KEELWGGWVTLANGW--RLELPEIPDDTRLPITVEAK 65 (67)
T ss_pred EEEEECCcchhheeeee-cCccccCEEEECCcc--EEEeCCCCCCCCCCEEEEEE
Confidence 34443333335688888 444446788888865 34554 234678888763
No 24
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=42.73 E-value=63 Score=23.48 Aligned_cols=46 Identities=22% Similarity=0.459 Sum_probs=28.9
Q ss_pred EEEEEEEcCCCCeE----EcccCCCCeeeeCCC---------CC-cceEEEEEEEeCCCCeEEE
Q 029804 98 VAMDVAQVGSSNWG----YMSRNYGAVWDTSRV---------PN-GALQFRFVVTSGYDGKWIW 147 (187)
Q Consensus 98 ~~VeVk~~g~~~W~----~m~r~~ga~W~~~~~---------l~-gPlsvRvt~t~~~~G~~iv 147 (187)
++|+|.++- ..|. +|.|....+|++.-+ .. ..+.+||+. .+|+++.
T Consensus 17 ~~V~l~GdF-n~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~---~~G~~~~ 76 (99)
T cd02854 17 EEVYLIGDF-NNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVT---PSGEWID 76 (99)
T ss_pred CEEEEEccC-CCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEe---CCCCEEE
Confidence 355665432 3565 488866569987522 13 379999985 6787654
No 25
>PLN02252 nitrate reductase [NADPH]
Probab=39.50 E-value=84 Score=31.83 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=19.3
Q ss_pred CCCcceEEEEEEEcCCCCeEEccc
Q 029804 92 GGQTEMVAMDVAQVGSSNWGYMSR 115 (187)
Q Consensus 92 ~G~g~I~~VeVk~~g~~~W~~m~r 115 (187)
+|...|+.|||+.+|+.+|+....
T Consensus 369 ggg~~I~rVEVS~DgG~tW~~a~l 392 (888)
T PLN02252 369 GGGRKVTRVEVSLDGGETWRLCDL 392 (888)
T ss_pred CCCCceEEEEEEcCCCCcceeCcc
Confidence 443479999999999889997555
No 26
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=38.63 E-value=1.1e+02 Score=21.05 Aligned_cols=47 Identities=21% Similarity=0.480 Sum_probs=31.8
Q ss_pred eEEEEEEEcCCCCeE---EcccCCCCeeeeCCC-CCcceEEEEEEEeCCCCeEEEEc
Q 029804 97 MVAMDVAQVGSSNWG---YMSRNYGAVWDTSRV-PNGALQFRFVVTSGYDGKWIWAK 149 (187)
Q Consensus 97 I~~VeVk~~g~~~W~---~m~r~~ga~W~~~~~-l~gPlsvRvt~t~~~~G~~iv~~ 149 (187)
.++|+|.++ -..|. +|.+..+. |.+.-. +.|.+.+|+. .+|+++...
T Consensus 12 a~~V~v~G~-F~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~----Vdg~w~~d~ 62 (79)
T cd02859 12 GKEVYVTGS-FDNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFI----VDGEWRHSP 62 (79)
T ss_pred CcEEEEEEE-cCCCCccccceECCCC-cEEEEEcCCCCEEEEEE----ECCEEEeCC
Confidence 467888864 24676 48887654 877544 4678888887 478877643
No 27
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=37.55 E-value=2e+02 Score=24.11 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=32.4
Q ss_pred CCCceecCHHHHHHhhcCCCCcccccccEEEEEEEEEeccccCCcEEEEEecCCCCCcEEEEEEEEeCCCcceE
Q 029804 25 NQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMV 98 (187)
Q Consensus 25 ~~~~fdLs~~AF~~ia~~~~~~~l~~~Gii~v~yrrV~C~~~g~ni~~~v~~gS~~~~w~av~v~n~~G~g~I~ 98 (187)
++.+|-+++.+|. .. .|. |-.-+=...+ .+.|.|++-| |+|.|.+..=..+|.
T Consensus 46 dp~~FyV~P~~f~--~~---------tG~----WY~~~~~~~~-~~aF~V~~Ps-----l~l~v~d~~t~~dvt 98 (209)
T PF12863_consen 46 DPTNFYVSPAAFG--GK---------TGN----WYQWNGTPKG-DVAFYVQDPS-----LSLKVWDANTDKDVT 98 (209)
T ss_pred CCcCEEEChHHhC--Cc---------ccc----eEecCCCCCc-ceEEEEeCCc-----eEEEEEecccccccc
Confidence 4789999999993 22 222 3232223333 7899999744 788887764323443
No 28
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.48 E-value=1.9e+02 Score=25.75 Aligned_cols=84 Identities=18% Similarity=0.252 Sum_probs=52.2
Q ss_pred EEEEEEEeccccCCcEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCCCCcceEEE
Q 029804 55 DVEYKRVPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFR 134 (187)
Q Consensus 55 ~v~yrrV~C~~~g~ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~l~gPlsvR 134 (187)
.+.|..+. .+. .+.|.+++.|- .+ ...+|.+.|.+.+|-.+ .|+++|+
T Consensus 47 ~l~wq~l~--~~~-~~~~~L~~~sq--~~-----~f~~~~s~vAAf~lPan----------------------~G~l~i~ 94 (303)
T PRK10564 47 QLTWQPVD--QSK-TQTTQLATGGQ--QL-----NVAGISGPVAAYSLPAN----------------------IGELTLT 94 (303)
T ss_pred cCCceEcc--CCC-ceEEEeCCCCc--ce-----ecCCCcccEEEEEcccc----------------------cccEEEE
Confidence 34565553 344 78899888763 32 22345566666665433 3578899
Q ss_pred EEEEeCCCCeEEEEcc--ccCCCCCCCcEEecCcccccccc
Q 029804 135 FVVTSGYDGKWIWAKN--VLPADWKPGMIYNSGVQITDIAK 173 (187)
Q Consensus 135 vt~t~~~~G~~iv~~~--vip~~w~~G~~y~t~vqf~~~a~ 173 (187)
|++. ...+.+-+.+ ++-++|++-.+|.+. +|.....
T Consensus 95 LsS~--v~~~~VfaPnVlvLD~~~~~~~~y~s~-~F~y~~~ 132 (303)
T PRK10564 95 LSSL--VNDKSVFAPNVLVLDQNMRPAAFYPSS-YFTYQEP 132 (303)
T ss_pred EEEE--ecCCcEEeceEEEEcCCCCEEEEeccc-ceEEccC
Confidence 9763 4445777777 667778877777644 5664433
No 29
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=33.05 E-value=25 Score=21.54 Aligned_cols=10 Identities=60% Similarity=1.318 Sum_probs=8.9
Q ss_pred ccCCCCCCCc
Q 029804 151 VLPADWKPGM 160 (187)
Q Consensus 151 vip~~w~~G~ 160 (187)
+.|++|++|.
T Consensus 11 ~tPanW~pGd 20 (40)
T PF10417_consen 11 ATPANWKPGD 20 (40)
T ss_dssp BBCTTTCTTS
T ss_pred ccCcCCCCCC
Confidence 7899999986
No 30
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=32.89 E-value=85 Score=21.50 Aligned_cols=44 Identities=27% Similarity=0.580 Sum_probs=28.1
Q ss_pred EEEEEEEcCCCCe--EEcccCCCCeeeeCCCC-CcceEEEEEEEeCCCCeEE
Q 029804 98 VAMDVAQVGSSNW--GYMSRNYGAVWDTSRVP-NGALQFRFVVTSGYDGKWI 146 (187)
Q Consensus 98 ~~VeVk~~g~~~W--~~m~r~~ga~W~~~~~l-~gPlsvRvt~t~~~~G~~i 146 (187)
++|+|.++ -..| .+|+|.....|++.-++ .|.+.+|+. .+|.+.
T Consensus 14 ~~V~v~G~-fn~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~----vdg~~~ 60 (82)
T cd02861 14 DSVYLAGS-FNNWNAIPMEREGDGLWVVTVELRPGRYEYKFV----VDGEWV 60 (82)
T ss_pred CEEEEEeE-CCCCCcccCEECCCCcEEEEEeCCCCcEEEEEE----ECCEEe
Confidence 56777754 2357 46888764589876433 566777776 367665
No 31
>COG3895 Predicted periplasmic protein [General function prediction only]
Probab=32.43 E-value=52 Score=25.01 Aligned_cols=28 Identities=39% Similarity=0.655 Sum_probs=20.9
Q ss_pred eEEEEEEEeCCCCeEEEEccccCCCCCCCcEEecC
Q 029804 131 LQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSG 165 (187)
Q Consensus 131 lsvRvt~t~~~~G~~iv~~~vip~~w~~G~~y~t~ 165 (187)
.+++++ .+|+++++.|||.+ .|.-|..+
T Consensus 54 ~sv~~v----~Dg~tlv~~nviSa---SGAkYa~G 81 (112)
T COG3895 54 ISVSFV----LDGKTLVLSNVISA---SGAKYADG 81 (112)
T ss_pred ceEEEE----ecCCEEEEeeeeec---cCccccCc
Confidence 345665 59999999999985 47778654
No 32
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=26.91 E-value=2e+02 Score=24.14 Aligned_cols=43 Identities=16% Similarity=0.373 Sum_probs=28.9
Q ss_pred cEEEEEecCCCCCcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcc
Q 029804 69 NLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMS 114 (187)
Q Consensus 69 ni~~~v~~gS~~~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~ 114 (187)
.|.+.|-+ .+++|+|.+++++..|. +..+.+=.=+-..|+.|+
T Consensus 109 ~I~vWV~G-~n~~h~L~v~lrD~~G~--~~~l~~G~L~f~GWK~L~ 151 (217)
T PF04620_consen 109 SISVWVYG-DNYPHWLEVLLRDAKGE--VHQLPLGSLNFDGWKNLT 151 (217)
T ss_pred EEEEEEEC-CCCCceEEEEEEcCCCC--EEEEEeeeecCCceeEEE
Confidence 45555554 34689999999999864 666655322335799884
No 33
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=25.72 E-value=2e+02 Score=19.27 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=28.7
Q ss_pred eEEEEEEEcCCCCe----EEcc-cCCCCeeeeC--CCCC--c-ceEEEEEEEeCCCCeEEE
Q 029804 97 MVAMDVAQVGSSNW----GYMS-RNYGAVWDTS--RVPN--G-ALQFRFVVTSGYDGKWIW 147 (187)
Q Consensus 97 I~~VeVk~~g~~~W----~~m~-r~~ga~W~~~--~~l~--g-PlsvRvt~t~~~~G~~iv 147 (187)
-++|+|.......| .+|+ +..+.+|++. ..++ + -+.+||+. .+|++..
T Consensus 22 A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~---~~g~~~~ 79 (85)
T PF02922_consen 22 AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDG---DDGETPE 79 (85)
T ss_dssp ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEE---TTTEEEE
T ss_pred CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEe---CCCcEEE
Confidence 45666665543324 3677 4556699875 2343 3 79999976 5554444
No 34
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=24.36 E-value=1.1e+02 Score=23.69 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.7
Q ss_pred CcEEEEEEEEeCCCcceEEEEEEEc
Q 029804 81 PNYLAVKVLYQGGQTEMVAMDVAQV 105 (187)
Q Consensus 81 ~~w~av~v~n~~G~g~I~~VeVk~~ 105 (187)
+||.-+.|.|.+| ...++|+|+..
T Consensus 50 qyyVpF~V~N~gg-~TAasV~V~ge 73 (122)
T TIGR02588 50 QYYVPFAIHNLGG-TTAAAVNIRGE 73 (122)
T ss_pred EEEEEEEEEeCCC-cEEEEEEEEEE
Confidence 5999999999987 57999999854
No 35
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=22.03 E-value=1.1e+02 Score=22.36 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=25.9
Q ss_pred CcEEEEEEEEeCCCcceEEEEEEEcCCCCeEEcccCCCCeeeeCCCCCcceEEEEEEEeCCCCeEEEE
Q 029804 81 PNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAVWDTSRVPNGALQFRFVVTSGYDGKWIWA 148 (187)
Q Consensus 81 ~~w~av~v~n~~G~g~I~~VeVk~~g~~~W~~m~r~~ga~W~~~~~l~gPlsvRvt~t~~~~G~~iv~ 148 (187)
++|+.-+...++| ..|..+++. .+++.+.+-.|.+...-.|+|.++.++ .+|+....
T Consensus 40 a~~I~~v~v~~ng-~~v~~~~~~-------~siS~NP~l~F~~~~~~~g~l~v~~~D---n~G~~~~~ 96 (100)
T PF08770_consen 40 AHFIEEVEVTYNG-KPVFRADWG-------PSISENPYLRFSFKGKKSGTLTVTWTD---NKGNSFSA 96 (100)
T ss_dssp -B-EEEEEEEETT-EEEEEEEE--------TTB-SS-EEEEEEEESSSEEEEEEEEE---TTS-EEEE
T ss_pred hHheEEEEEEECC-EEEEEEEeC-------CcccCCCcEEEEEecCCCcEEEEEEEE---CCCCEEEE
Confidence 3555533333444 244444332 234444433444444445677777777 67766544
Done!