Query 029806
Match_columns 187
No_of_seqs 152 out of 1532
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:57:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 6.9E-33 1.5E-37 227.9 11.3 133 19-184 237-371 (400)
2 KOG0331 ATP-dependent RNA heli 100.0 5.9E-31 1.3E-35 233.1 12.9 140 15-185 306-447 (519)
3 COG0513 SrmB Superfamily II DN 100.0 1.6E-29 3.5E-34 227.2 15.1 136 16-184 241-378 (513)
4 KOG0330 ATP-dependent RNA heli 100.0 9.9E-30 2.2E-34 216.2 11.4 134 18-185 271-406 (476)
5 KOG0333 U5 snRNP-like RNA heli 100.0 8.9E-29 1.9E-33 216.7 14.3 133 19-185 489-623 (673)
6 KOG0332 ATP-dependent RNA heli 100.0 8.6E-29 1.9E-33 209.7 13.0 134 17-183 299-440 (477)
7 KOG0326 ATP-dependent RNA heli 99.9 3.1E-28 6.8E-33 203.3 8.9 133 18-184 293-427 (459)
8 KOG0340 ATP-dependent RNA heli 99.9 2.8E-27 6.2E-32 199.4 12.5 140 14-184 218-359 (442)
9 PRK04837 ATP-dependent RNA hel 99.9 1.3E-26 2.9E-31 203.6 14.0 132 19-184 227-360 (423)
10 PRK11776 ATP-dependent RNA hel 99.9 3.4E-26 7.4E-31 202.9 16.3 131 19-183 214-346 (460)
11 PRK11192 ATP-dependent RNA hel 99.9 5.8E-26 1.3E-30 199.9 16.2 135 17-184 214-350 (434)
12 PTZ00110 helicase; Provisional 99.9 1.2E-25 2.6E-30 203.6 16.0 136 17-184 345-482 (545)
13 PRK10590 ATP-dependent RNA hel 99.9 1.3E-25 2.8E-30 199.3 15.4 134 17-184 215-350 (456)
14 KOG0342 ATP-dependent RNA heli 99.9 5.5E-26 1.2E-30 197.8 12.4 142 11-185 293-434 (543)
15 PRK04537 ATP-dependent RNA hel 99.9 2E-25 4.3E-30 203.1 15.2 133 18-184 228-362 (572)
16 KOG0343 RNA Helicase [RNA proc 99.9 1.1E-25 2.4E-30 198.3 12.6 139 14-185 280-419 (758)
17 PRK01297 ATP-dependent RNA hel 99.9 1.1E-24 2.5E-29 194.0 17.2 131 19-183 307-439 (475)
18 PLN00206 DEAD-box ATP-dependen 99.9 1.1E-24 2.3E-29 196.3 16.4 134 19-184 337-473 (518)
19 PRK11634 ATP-dependent RNA hel 99.9 1E-24 2.2E-29 200.2 16.2 133 18-184 216-350 (629)
20 KOG0345 ATP-dependent RNA heli 99.9 4.3E-25 9.3E-30 191.6 12.7 134 17-183 225-361 (567)
21 KOG0335 ATP-dependent RNA heli 99.9 4.9E-25 1.1E-29 193.1 12.9 138 17-183 298-441 (482)
22 PTZ00424 helicase 45; Provisio 99.9 2.9E-24 6.2E-29 186.7 15.1 133 18-183 237-371 (401)
23 KOG0346 RNA helicase [RNA proc 99.9 1.1E-24 2.3E-29 188.0 11.0 161 14-184 234-408 (569)
24 KOG0327 Translation initiation 99.9 1.8E-24 3.8E-29 183.8 11.3 130 19-184 237-368 (397)
25 KOG0336 ATP-dependent RNA heli 99.9 1.6E-24 3.4E-29 186.0 11.0 135 17-184 434-570 (629)
26 KOG0348 ATP-dependent RNA heli 99.9 1E-23 2.2E-28 185.4 13.9 142 14-184 388-552 (708)
27 TIGR00614 recQ_fam ATP-depende 99.9 2.4E-23 5.1E-28 185.5 15.6 116 35-182 212-327 (470)
28 KOG0341 DEAD-box protein abstr 99.9 1.3E-24 2.9E-29 185.5 6.8 129 20-183 395-525 (610)
29 PLN03137 ATP-dependent DNA hel 99.9 4.4E-23 9.5E-28 195.7 15.9 126 25-182 656-781 (1195)
30 PRK11057 ATP-dependent DNA hel 99.9 5.6E-23 1.2E-27 188.2 15.9 116 35-183 223-340 (607)
31 KOG0338 ATP-dependent RNA heli 99.9 2E-23 4.3E-28 182.8 9.8 136 16-184 392-531 (691)
32 KOG0347 RNA helicase [RNA proc 99.9 1.6E-24 3.5E-29 191.0 0.5 132 16-182 433-564 (731)
33 TIGR03817 DECH_helic helicase/ 99.9 3E-22 6.5E-27 186.9 14.1 113 35-182 260-380 (742)
34 TIGR01389 recQ ATP-dependent D 99.9 7.9E-22 1.7E-26 180.1 16.3 123 26-182 203-325 (591)
35 KOG0344 ATP-dependent RNA heli 99.9 2.8E-22 6.2E-27 177.7 12.2 136 17-184 356-493 (593)
36 PRK04914 ATP-dependent helicas 99.9 4.4E-21 9.4E-26 181.9 15.1 113 33-176 478-591 (956)
37 KOG0339 ATP-dependent RNA heli 99.9 3E-21 6.6E-26 169.2 12.0 136 17-184 436-573 (731)
38 KOG0350 DEAD-box ATP-dependent 99.9 1.7E-21 3.8E-26 170.3 10.3 139 13-184 395-538 (620)
39 KOG4284 DEAD box protein [Tran 99.9 1.6E-21 3.6E-26 174.7 10.3 133 19-184 236-377 (980)
40 PRK12898 secA preprotein trans 99.8 1.3E-20 2.7E-25 172.4 13.6 130 22-185 446-585 (656)
41 COG0514 RecQ Superfamily II DN 99.8 1.2E-20 2.7E-25 170.0 13.1 106 51-184 228-333 (590)
42 COG1111 MPH1 ERCC4-like helica 99.8 3.9E-20 8.5E-25 162.2 14.5 129 27-184 341-479 (542)
43 PRK13767 ATP-dependent helicas 99.8 5.9E-20 1.3E-24 174.2 13.7 98 53-177 284-386 (876)
44 cd00079 HELICc Helicase superf 99.8 2.9E-19 6.3E-24 131.0 14.3 126 22-180 2-127 (131)
45 KOG0334 RNA helicase [RNA proc 99.8 5E-20 1.1E-24 171.8 12.3 134 19-184 583-718 (997)
46 PRK09200 preprotein translocas 99.8 1.4E-19 3.1E-24 168.5 14.6 124 28-185 407-540 (790)
47 TIGR00580 mfd transcription-re 99.8 1.2E-19 2.7E-24 172.1 13.8 105 53-184 660-766 (926)
48 PRK10689 transcription-repair 99.8 7.3E-20 1.6E-24 176.8 11.4 130 20-184 784-915 (1147)
49 PRK13766 Hef nuclease; Provisi 99.8 4.4E-19 9.5E-24 166.3 15.6 124 31-183 344-476 (773)
50 TIGR00631 uvrb excinuclease AB 99.8 4.7E-19 1E-23 163.3 15.1 125 29-184 421-551 (655)
51 TIGR01970 DEAH_box_HrpB ATP-de 99.8 4.5E-19 9.8E-24 166.6 13.9 135 20-184 178-334 (819)
52 PRK05298 excinuclease ABC subu 99.8 1.1E-18 2.3E-23 161.2 15.0 126 28-184 424-555 (652)
53 PF00271 Helicase_C: Helicase 99.8 4.2E-19 9.1E-24 120.7 7.5 78 71-176 1-78 (78)
54 PRK11664 ATP-dependent RNA hel 99.8 9.8E-19 2.1E-23 164.4 12.3 133 20-183 181-336 (812)
55 TIGR01587 cas3_core CRISPR-ass 99.8 4.1E-18 8.9E-23 146.2 15.1 109 34-176 207-320 (358)
56 KOG0349 Putative DEAD-box RNA 99.8 7.3E-19 1.6E-23 152.3 10.1 109 51-186 503-615 (725)
57 PRK09751 putative ATP-dependen 99.8 1.1E-18 2.5E-23 170.6 12.2 104 53-183 244-380 (1490)
58 PHA02653 RNA helicase NPH-II; 99.8 3.1E-18 6.7E-23 158.0 14.4 102 53-183 395-511 (675)
59 PRK10917 ATP-dependent DNA hel 99.8 5.7E-18 1.2E-22 157.1 15.6 106 52-184 470-585 (681)
60 TIGR03714 secA2 accessory Sec 99.8 7E-18 1.5E-22 156.3 13.8 124 27-185 402-536 (762)
61 TIGR02621 cas3_GSU0051 CRISPR- 99.8 1.3E-17 2.7E-22 156.0 14.7 138 20-183 243-388 (844)
62 TIGR00643 recG ATP-dependent D 99.8 1.9E-17 4.2E-22 152.4 15.4 106 52-184 447-562 (630)
63 TIGR00963 secA preprotein tran 99.7 4.2E-17 9.1E-22 150.5 14.4 119 34-185 389-516 (745)
64 PRK02362 ski2-like helicase; P 99.7 3.5E-17 7.6E-22 153.1 12.0 104 53-183 243-394 (737)
65 KOG0354 DEAD-box like helicase 99.7 7.7E-17 1.7E-21 147.8 13.4 124 31-183 392-526 (746)
66 PRK12906 secA preprotein trans 99.7 1.1E-16 2.4E-21 148.7 13.7 119 34-185 424-552 (796)
67 KOG0337 ATP-dependent RNA heli 99.7 1.2E-17 2.6E-22 143.9 6.6 136 17-185 230-367 (529)
68 PHA02558 uvsW UvsW helicase; P 99.7 1.6E-16 3.5E-21 142.8 14.1 111 35-176 329-440 (501)
69 TIGR00603 rad25 DNA repair hel 99.7 1.6E-16 3.4E-21 147.1 13.4 107 35-176 481-588 (732)
70 TIGR03158 cas3_cyano CRISPR-as 99.7 1.8E-16 4E-21 136.9 12.8 116 20-173 239-357 (357)
71 PRK11131 ATP-dependent RNA hel 99.7 3.3E-16 7.2E-21 151.5 13.6 133 20-183 250-408 (1294)
72 PRK09401 reverse gyrase; Revie 99.7 2.3E-16 5E-21 153.0 11.7 114 18-173 302-429 (1176)
73 smart00490 HELICc helicase sup 99.7 3.1E-16 6.6E-21 105.9 8.6 81 68-176 2-82 (82)
74 KOG0351 ATP-dependent DNA heli 99.7 5.8E-16 1.3E-20 146.5 13.1 106 50-183 482-587 (941)
75 PRK12900 secA preprotein trans 99.6 1.3E-15 2.8E-20 143.3 12.6 137 14-185 564-710 (1025)
76 TIGR01967 DEAH_box_HrpA ATP-de 99.6 2.4E-15 5.2E-20 145.9 13.3 132 21-183 244-401 (1283)
77 PRK00254 ski2-like helicase; P 99.6 2E-15 4.4E-20 140.9 11.7 103 53-183 238-385 (720)
78 COG1201 Lhr Lhr-like helicases 99.6 3.4E-15 7.3E-20 139.3 11.4 96 53-175 253-348 (814)
79 PRK14701 reverse gyrase; Provi 99.6 6E-15 1.3E-19 146.4 11.8 115 18-169 303-424 (1638)
80 PRK01172 ski2-like helicase; P 99.6 1.8E-14 3.8E-19 133.7 12.2 97 52-176 235-364 (674)
81 COG1202 Superfamily II helicas 99.5 2.1E-14 4.7E-19 128.1 9.4 139 17-183 401-550 (830)
82 TIGR01054 rgy reverse gyrase. 99.5 1.2E-13 2.6E-18 134.3 12.8 103 18-161 300-410 (1171)
83 PLN03142 Probable chromatin-re 99.5 2.9E-13 6.4E-18 129.6 15.0 114 34-175 471-584 (1033)
84 COG1061 SSL2 DNA or RNA helica 99.5 9.2E-13 2E-17 116.9 14.1 107 35-174 269-375 (442)
85 KOG0352 ATP-dependent DNA heli 99.5 1E-13 2.2E-18 120.3 7.6 100 54-181 256-355 (641)
86 PRK09694 helicase Cas3; Provis 99.5 6.7E-13 1.5E-17 125.7 13.7 98 52-176 559-663 (878)
87 COG1197 Mfd Transcription-repa 99.4 1.5E-12 3.3E-17 124.1 13.9 150 1-185 759-910 (1139)
88 KOG0329 ATP-dependent RNA heli 99.4 4.5E-14 9.7E-19 115.8 2.7 98 19-185 255-354 (387)
89 COG0556 UvrB Helicase subunit 99.4 1.7E-12 3.7E-17 115.2 11.0 128 26-184 422-555 (663)
90 COG1200 RecG RecG-like helicas 99.3 2.7E-11 5.9E-16 110.4 13.3 136 15-184 442-587 (677)
91 KOG0353 ATP-dependent DNA heli 99.3 1.7E-11 3.7E-16 105.5 9.5 103 36-167 301-403 (695)
92 PRK11448 hsdR type I restricti 99.3 4.6E-11 1E-15 115.9 12.5 95 53-175 698-800 (1123)
93 PRK12904 preprotein translocas 99.3 1.3E-10 2.7E-15 109.2 14.6 122 30-185 411-572 (830)
94 TIGR00595 priA primosomal prot 99.2 3.9E-11 8.4E-16 108.2 10.4 90 66-182 271-375 (505)
95 COG4098 comFA Superfamily II D 99.2 8.4E-11 1.8E-15 100.0 10.9 106 38-175 293-401 (441)
96 PRK05580 primosome assembly pr 99.2 1.8E-10 3.9E-15 107.3 11.7 92 65-183 438-544 (679)
97 PRK13104 secA preprotein trans 99.2 4.3E-10 9.4E-15 106.0 13.9 124 28-185 423-586 (896)
98 COG1205 Distinct helicase fami 99.1 4.2E-10 9E-15 106.9 11.4 140 15-184 263-418 (851)
99 PRK13107 preprotein translocas 99.1 1.3E-09 2.8E-14 102.7 13.7 119 34-185 433-590 (908)
100 COG1204 Superfamily II helicas 98.9 1.2E-08 2.6E-13 96.0 12.1 99 51-176 251-394 (766)
101 COG1643 HrpA HrpA-like helicas 98.8 3.3E-08 7.1E-13 93.5 10.6 138 15-181 222-382 (845)
102 COG1203 CRISPR-associated heli 98.8 3.4E-08 7.5E-13 92.8 9.4 99 51-176 438-536 (733)
103 KOG0391 SNF2 family DNA-depend 98.7 1.3E-07 2.8E-12 90.6 11.1 112 32-172 1258-1375(1958)
104 KOG0390 DNA repair protein, SN 98.7 3.5E-07 7.5E-12 85.5 12.8 130 19-176 564-693 (776)
105 KOG0387 Transcription-coupled 98.7 3E-07 6.6E-12 85.2 11.8 117 34-179 530-650 (923)
106 KOG4150 Predicted ATP-dependen 98.6 1.2E-07 2.6E-12 85.6 8.4 120 35-184 510-636 (1034)
107 KOG0384 Chromodomain-helicase 98.6 1.9E-07 4.1E-12 89.7 9.6 110 35-172 684-793 (1373)
108 KOG0385 Chromatin remodeling c 98.6 4.4E-07 9.6E-12 84.0 11.4 113 31-172 469-581 (971)
109 KOG0389 SNF2 family DNA-depend 98.6 5.7E-07 1.2E-11 83.4 11.4 110 34-172 761-876 (941)
110 PRK12903 secA preprotein trans 98.5 1.7E-06 3.7E-11 81.6 13.1 122 30-185 407-538 (925)
111 KOG0950 DNA polymerase theta/e 98.5 5E-07 1.1E-11 85.2 9.0 96 53-176 460-597 (1008)
112 KOG0947 Cytoplasmic exosomal R 98.4 1.2E-06 2.6E-11 82.8 9.8 115 38-182 554-719 (1248)
113 KOG0953 Mitochondrial RNA heli 98.4 2.4E-06 5.3E-11 76.9 10.6 97 53-176 357-462 (700)
114 COG0553 HepA Superfamily II DN 98.4 6.1E-06 1.3E-10 77.9 13.9 110 34-172 692-804 (866)
115 KOG0922 DEAH-box RNA helicase 98.4 3.1E-06 6.6E-11 77.4 10.8 135 19-182 226-386 (674)
116 KOG0920 ATP-dependent RNA heli 98.3 1.8E-06 3.9E-11 82.1 8.4 124 34-185 395-543 (924)
117 KOG0948 Nuclear exosomal RNA h 98.3 9.1E-07 2E-11 81.9 6.1 106 51-183 381-536 (1041)
118 KOG1000 Chromatin remodeling p 98.3 4.6E-06 1E-10 74.3 10.1 121 35-184 473-600 (689)
119 KOG1002 Nucleotide excision re 98.3 3.3E-06 7.2E-11 75.3 8.8 111 34-172 620-737 (791)
120 PRK12326 preprotein translocas 98.3 1.7E-05 3.8E-10 73.9 13.7 118 35-185 412-546 (764)
121 KOG0951 RNA helicase BRR2, DEA 98.3 1.2E-05 2.6E-10 78.0 12.4 129 18-175 509-687 (1674)
122 KOG0392 SNF2 family DNA-depend 98.3 1.4E-05 2.9E-10 77.4 12.5 112 35-172 1311-1436(1549)
123 KOG1123 RNA polymerase II tran 98.3 9E-06 1.9E-10 72.8 10.5 113 26-174 520-633 (776)
124 TIGR01407 dinG_rel DnaQ family 98.2 5.3E-06 1.2E-10 79.4 9.0 91 37-159 660-755 (850)
125 KOG0923 mRNA splicing factor A 98.2 7.5E-06 1.6E-10 75.1 8.0 139 16-183 438-603 (902)
126 TIGR00348 hsdR type I site-spe 98.1 3.8E-05 8.2E-10 71.8 12.1 104 53-183 514-648 (667)
127 KOG0388 SNF2 family DNA-depend 98.1 2.2E-05 4.7E-10 72.8 9.9 109 34-172 1028-1136(1185)
128 KOG0952 DNA/RNA helicase MER3/ 98.0 3.8E-05 8.2E-10 73.5 10.5 101 53-181 349-486 (1230)
129 PRK12899 secA preprotein trans 98.0 9.1E-05 2E-09 70.8 12.9 119 34-185 552-680 (970)
130 COG1110 Reverse gyrase [DNA re 98.0 3.3E-05 7E-10 73.9 9.5 105 17-160 309-417 (1187)
131 PRK13103 secA preprotein trans 98.0 6.4E-05 1.4E-09 71.6 10.9 139 12-185 413-590 (913)
132 KOG0924 mRNA splicing factor A 98.0 1.7E-05 3.7E-10 73.1 6.5 133 21-182 533-693 (1042)
133 COG4096 HsdR Type I site-speci 97.9 8E-05 1.7E-09 69.9 10.4 110 36-172 406-522 (875)
134 KOG1015 Transcription regulato 97.9 0.00011 2.3E-09 70.1 9.9 115 31-172 1123-1259(1567)
135 PRK12901 secA preprotein trans 97.8 0.00022 4.8E-09 68.8 11.6 118 35-185 613-740 (1112)
136 COG4581 Superfamily II RNA hel 97.6 0.00021 4.5E-09 69.1 8.7 104 52-182 378-533 (1041)
137 PF13307 Helicase_C_2: Helicas 97.6 0.00018 3.8E-09 55.9 6.7 76 53-159 9-91 (167)
138 TIGR00596 rad1 DNA repair prot 97.6 0.00023 5E-09 67.8 7.7 44 32-75 268-317 (814)
139 PF06862 DUF1253: Protein of u 97.5 0.0047 1E-07 55.1 15.1 132 17-175 258-396 (442)
140 KOG0386 Chromatin remodeling c 97.5 0.00057 1.2E-08 65.4 9.1 110 35-172 711-820 (1157)
141 COG1199 DinG Rad3-related DNA 97.5 0.0018 3.9E-08 60.2 12.4 80 52-160 478-559 (654)
142 CHL00122 secA preprotein trans 97.5 0.0031 6.8E-08 60.2 13.9 82 35-148 409-491 (870)
143 KOG0926 DEAH-box RNA helicase 97.4 0.0011 2.4E-08 62.5 9.5 55 125-183 628-701 (1172)
144 KOG0949 Predicted helicase, DE 97.3 0.00034 7.4E-09 66.9 5.7 69 81-176 965-1034(1330)
145 COG4889 Predicted helicase [Ge 97.3 0.00015 3.3E-09 68.7 2.3 100 52-175 459-572 (1518)
146 KOG0925 mRNA splicing factor A 97.2 0.0036 7.9E-08 56.3 10.0 134 22-183 224-384 (699)
147 PRK08074 bifunctional ATP-depe 97.1 0.0036 7.8E-08 60.8 10.1 94 37-159 738-834 (928)
148 KOG4439 RNA polymerase II tran 97.1 0.013 2.8E-07 54.7 13.0 114 32-172 727-840 (901)
149 COG1198 PriA Primosomal protei 96.9 0.0044 9.5E-08 58.4 8.3 86 67-179 494-594 (730)
150 PRK11747 dinG ATP-dependent DN 96.7 0.016 3.6E-07 54.6 10.4 94 36-159 520-615 (697)
151 PRK07246 bifunctional ATP-depe 96.6 0.018 3.8E-07 55.3 10.3 90 36-159 633-724 (820)
152 TIGR00604 rad3 DNA repair heli 96.5 0.032 6.9E-07 52.6 10.9 99 36-160 507-615 (705)
153 PRK12902 secA preprotein trans 96.4 0.023 4.9E-07 54.7 9.2 83 34-148 423-506 (939)
154 TIGR03117 cas_csf4 CRISPR-asso 96.3 0.035 7.5E-07 51.9 10.0 82 52-159 469-560 (636)
155 KOG0701 dsRNA-specific nucleas 96.1 0.0033 7.1E-08 63.3 2.6 92 54-172 293-395 (1606)
156 PRK05580 primosome assembly pr 96.1 0.1 2.2E-06 49.1 12.1 99 27-157 167-266 (679)
157 TIGR00595 priA primosomal prot 96.0 0.049 1.1E-06 49.6 9.4 91 35-157 10-101 (505)
158 PRK10917 ATP-dependent DNA hel 96.0 0.053 1.1E-06 51.0 9.7 98 26-154 286-388 (681)
159 PRK14873 primosome assembly pr 96.0 0.082 1.8E-06 49.7 10.8 93 34-157 172-265 (665)
160 smart00492 HELICc3 helicase su 95.4 0.088 1.9E-06 39.8 7.3 46 88-159 31-78 (141)
161 TIGR00643 recG ATP-dependent D 95.3 0.091 2E-06 49.0 8.4 98 26-154 260-362 (630)
162 TIGR02562 cas3_yersinia CRISPR 95.1 0.11 2.4E-06 50.9 8.6 110 57-176 760-880 (1110)
163 PF13871 Helicase_C_4: Helicas 95.1 0.091 2E-06 44.3 7.1 46 127-176 61-114 (278)
164 KOG1016 Predicted DNA helicase 94.8 0.088 1.9E-06 50.1 6.9 97 52-172 718-831 (1387)
165 TIGR00580 mfd transcription-re 94.6 0.22 4.7E-06 48.6 9.1 100 25-155 475-579 (926)
166 PF02399 Herpes_ori_bp: Origin 94.4 0.67 1.4E-05 44.4 11.7 99 36-172 269-373 (824)
167 COG1198 PriA Primosomal protei 94.4 0.24 5.1E-06 47.1 8.7 98 27-156 222-320 (730)
168 COG1110 Reverse gyrase [DNA re 93.8 0.32 6.8E-06 47.6 8.3 62 51-136 123-190 (1187)
169 KOG1001 Helicase-like transcri 93.4 0.03 6.5E-07 52.6 0.8 113 32-172 520-632 (674)
170 COG0513 SrmB Superfamily II DN 93.0 0.59 1.3E-05 42.6 8.6 92 36-154 81-179 (513)
171 COG0653 SecA Preprotein transl 93.0 0.52 1.1E-05 45.2 8.4 84 33-149 412-495 (822)
172 PRK10689 transcription-repair 92.9 0.39 8.4E-06 47.9 7.8 75 53-154 649-727 (1147)
173 cd00268 DEADc DEAD-box helicas 92.2 2.6 5.6E-05 32.7 10.3 104 24-154 38-148 (203)
174 smart00491 HELICc2 helicase su 91.8 0.71 1.5E-05 34.8 6.4 47 91-159 31-79 (142)
175 PRK11776 ATP-dependent RNA hel 91.1 1.2 2.5E-05 39.7 8.1 102 25-154 44-152 (460)
176 PRK14701 reverse gyrase; Provi 90.9 0.76 1.7E-05 47.5 7.4 62 52-136 121-187 (1638)
177 PRK11634 ATP-dependent RNA hel 90.8 1.5 3.2E-05 41.1 8.7 100 27-154 48-154 (629)
178 COG1200 RecG RecG-like helicas 90.2 1.9 4.1E-05 40.5 8.7 86 52-172 310-399 (677)
179 cd01524 RHOD_Pyr_redox Member 89.4 0.74 1.6E-05 31.3 4.2 38 51-89 49-86 (90)
180 TIGR00614 recQ_fam ATP-depende 89.3 2.7 6E-05 37.6 8.9 60 53-136 51-110 (470)
181 cd00158 RHOD Rhodanese Homolog 88.2 1.1 2.3E-05 29.6 4.4 39 51-89 48-86 (89)
182 PRK11192 ATP-dependent RNA hel 88.2 3.1 6.7E-05 36.7 8.4 103 25-154 41-152 (434)
183 TIGR01389 recQ ATP-dependent D 87.9 4 8.6E-05 37.7 9.2 51 53-104 53-103 (591)
184 TIGR01054 rgy reverse gyrase. 87.4 1.6 3.4E-05 43.9 6.6 83 28-136 99-187 (1171)
185 COG1197 Mfd Transcription-repa 87.1 4.2 9E-05 40.5 9.1 78 51-155 641-722 (1139)
186 KOG2340 Uncharacterized conser 86.6 7.1 0.00015 36.1 9.6 112 33-172 533-648 (698)
187 cd01529 4RHOD_Repeats Member o 86.5 1.6 3.5E-05 29.9 4.6 39 51-89 54-92 (96)
188 cd01444 GlpE_ST GlpE sulfurtra 86.3 2.7 5.9E-05 28.4 5.6 39 51-89 54-92 (96)
189 KOG0347 RNA helicase [RNA proc 86.0 1.8 3.9E-05 40.0 5.6 44 56-99 266-312 (731)
190 smart00450 RHOD Rhodanese Homo 85.7 1.6 3.5E-05 29.1 4.2 39 51-89 54-92 (100)
191 cd01527 RHOD_YgaP Member of th 85.4 1.8 3.9E-05 29.7 4.4 38 51-88 52-89 (99)
192 cd01528 RHOD_2 Member of the R 84.7 1.6 3.6E-05 30.2 3.9 38 52-89 57-94 (101)
193 cd01523 RHOD_Lact_B Member of 84.4 1.7 3.7E-05 30.0 3.9 38 51-89 59-96 (100)
194 cd01518 RHOD_YceA Member of th 84.2 1.5 3.3E-05 30.4 3.5 39 51-89 59-97 (101)
195 PRK04537 ATP-dependent RNA hel 84.1 2.9 6.3E-05 38.6 6.3 75 53-154 84-164 (572)
196 cd01449 TST_Repeat_2 Thiosulfa 84.1 3.2 6.8E-05 29.4 5.3 50 37-88 64-113 (118)
197 cd01533 4RHOD_Repeat_2 Member 84.0 3.5 7.5E-05 29.0 5.4 38 52-89 65-103 (109)
198 KOG1513 Nuclear helicase MOP-3 83.1 0.89 1.9E-05 43.7 2.5 45 128-176 858-910 (1300)
199 cd01532 4RHOD_Repeat_1 Member 83.0 2.2 4.8E-05 29.1 3.9 38 52-89 49-88 (92)
200 PRK10590 ATP-dependent RNA hel 82.3 12 0.00027 33.3 9.4 73 54-154 76-154 (456)
201 KOG0330 ATP-dependent RNA heli 82.3 7.5 0.00016 34.6 7.6 64 36-102 113-179 (476)
202 PRK04837 ATP-dependent RNA hel 82.2 6.1 0.00013 34.7 7.4 75 53-155 83-163 (423)
203 PF10593 Z1: Z1 domain; Inter 81.8 3.5 7.5E-05 33.9 5.3 41 127-172 135-175 (239)
204 PRK13766 Hef nuclease; Provisi 81.5 16 0.00035 34.8 10.4 101 25-155 32-137 (773)
205 TIGR03817 DECH_helic helicase/ 81.5 8.6 0.00019 36.8 8.5 56 37-94 67-124 (742)
206 PLN03137 ATP-dependent DNA hel 81.4 11 0.00024 37.9 9.3 62 53-136 500-561 (1195)
207 cd01519 RHOD_HSP67B2 Member of 81.3 2.5 5.3E-05 29.3 3.7 39 51-89 64-102 (106)
208 PF11496 HDA2-3: Class II hist 81.0 18 0.0004 30.7 9.5 59 33-92 95-155 (297)
209 cd01448 TST_Repeat_1 Thiosulfa 81.0 4.4 9.4E-05 28.9 5.1 39 51-89 77-116 (122)
210 PRK11057 ATP-dependent DNA hel 80.9 12 0.00025 34.9 9.0 51 53-104 65-115 (607)
211 cd01535 4RHOD_Repeat_4 Member 80.9 6.4 0.00014 29.6 6.1 37 52-88 48-84 (145)
212 PRK01297 ATP-dependent RNA hel 80.4 16 0.00035 32.6 9.6 75 53-154 162-242 (475)
213 cd01525 RHOD_Kc Member of the 79.3 3.2 7E-05 28.7 3.8 37 53-89 65-101 (105)
214 cd01526 RHOD_ThiF Member of th 79.1 2.9 6.4E-05 30.1 3.6 38 51-88 70-108 (122)
215 PTZ00110 helicase; Provisional 78.9 13 0.00027 34.2 8.5 75 53-154 203-282 (545)
216 cd01520 RHOD_YbbB Member of th 78.8 5.5 0.00012 29.0 5.1 38 51-89 84-122 (128)
217 KOG0389 SNF2 family DNA-depend 78.6 13 0.00028 35.9 8.4 63 51-136 446-508 (941)
218 cd01447 Polysulfide_ST Polysul 78.5 2.2 4.7E-05 29.3 2.7 39 51-89 59-97 (103)
219 KOG0383 Predicted helicase [Ge 77.8 2 4.3E-05 40.7 2.9 77 35-136 616-692 (696)
220 KOG0921 Dosage compensation co 77.4 2.4 5.2E-05 41.4 3.3 117 36-180 627-768 (1282)
221 cd01534 4RHOD_Repeat_3 Member 77.4 4.1 8.8E-05 27.8 3.8 36 53-89 56-91 (95)
222 PRK05728 DNA polymerase III su 76.7 7.4 0.00016 29.3 5.3 56 25-86 6-61 (142)
223 cd01522 RHOD_1 Member of the R 76.4 4.6 0.0001 28.9 4.0 38 52-89 63-100 (117)
224 cd01521 RHOD_PspE2 Member of t 76.0 5.4 0.00012 28.1 4.2 38 51-89 62-101 (110)
225 cd00046 DEXDc DEAD-like helica 75.6 23 0.00051 24.4 9.6 64 30-94 8-73 (144)
226 COG1205 Distinct helicase fami 75.0 17 0.00036 35.5 8.4 70 23-94 86-161 (851)
227 KOG0298 DEAD box-containing he 73.3 6.6 0.00014 39.6 5.2 111 35-178 1204-1314(1394)
228 COG2927 HolC DNA polymerase II 73.1 21 0.00047 27.1 6.9 57 25-87 6-62 (144)
229 cd01445 TST_Repeats Thiosulfat 73.0 10 0.00023 28.2 5.3 50 38-89 82-134 (138)
230 PLN02160 thiosulfate sulfurtra 72.9 6.2 0.00013 29.3 4.0 38 51-88 79-116 (136)
231 COG0514 RecQ Superfamily II DN 72.6 12 0.00025 35.0 6.4 50 54-104 58-107 (590)
232 PRK00162 glpE thiosulfate sulf 72.0 13 0.00028 25.9 5.4 39 51-89 56-94 (108)
233 PF04364 DNA_pol3_chi: DNA pol 71.7 14 0.0003 27.6 5.7 48 36-87 15-62 (137)
234 cd01530 Cdc25 Cdc25 phosphatas 71.5 7.3 0.00016 28.2 4.0 39 51-89 66-117 (121)
235 PRK09751 putative ATP-dependen 71.1 24 0.00052 36.6 8.7 75 53-155 37-130 (1490)
236 PF00581 Rhodanese: Rhodanese- 70.1 16 0.00035 24.9 5.5 39 51-89 65-108 (113)
237 PRK06646 DNA polymerase III su 69.9 19 0.0004 27.7 6.1 54 28-86 8-61 (154)
238 KOG0339 ATP-dependent RNA heli 68.7 16 0.00035 33.7 6.3 71 56-154 299-375 (731)
239 PRK09401 reverse gyrase; Revie 68.7 13 0.00029 37.5 6.3 61 52-135 122-187 (1176)
240 KOG0385 Chromatin remodeling c 68.4 31 0.00068 33.4 8.2 52 50-103 214-265 (971)
241 TIGR03865 PQQ_CXXCW PQQ-depend 68.0 8.7 0.00019 29.5 4.0 39 51-89 114-153 (162)
242 TIGR00096 probable S-adenosylm 67.4 23 0.0005 29.8 6.7 61 55-141 26-86 (276)
243 KOG0331 ATP-dependent RNA heli 67.2 18 0.0004 33.2 6.4 95 53-174 165-272 (519)
244 PRK10287 thiosulfate:cyanide s 67.1 22 0.00048 25.1 5.7 36 52-88 59-94 (104)
245 PRK11493 sseA 3-mercaptopyruva 65.4 16 0.00035 30.3 5.5 38 51-88 229-266 (281)
246 PRK01415 hypothetical protein; 64.5 10 0.00022 31.4 4.0 39 51-89 169-207 (247)
247 cd00032 CASc Caspase, interleu 64.5 76 0.0016 25.8 11.1 89 51-170 7-108 (243)
248 PF00270 DEAD: DEAD/DEAH box h 64.4 54 0.0012 24.0 10.9 119 24-172 16-146 (169)
249 KOG0338 ATP-dependent RNA heli 64.2 30 0.00064 32.1 7.0 62 37-98 234-300 (691)
250 PRK14873 primosome assembly pr 64.0 27 0.00059 33.1 7.1 48 128-180 472-533 (665)
251 TIGR02981 phageshock_pspE phag 63.0 31 0.00066 24.2 5.7 36 52-88 57-92 (101)
252 PRK05320 rhodanese superfamily 62.9 12 0.00026 31.1 4.1 39 52-90 174-212 (257)
253 smart00115 CASc Caspase, inter 60.7 90 0.002 25.4 11.6 89 51-169 6-106 (241)
254 cd03028 GRX_PICOT_like Glutare 60.6 38 0.00082 23.0 5.7 40 54-94 8-53 (90)
255 KOG0352 ATP-dependent DNA heli 59.5 17 0.00036 33.0 4.6 62 53-136 61-122 (641)
256 COG1111 MPH1 ERCC4-like helica 59.5 81 0.0017 29.1 8.9 71 53-155 58-137 (542)
257 KOG0348 ATP-dependent RNA heli 58.2 35 0.00075 31.8 6.4 93 35-154 188-292 (708)
258 PLN00206 DEAD-box ATP-dependen 56.6 47 0.001 30.2 7.2 75 52-154 195-275 (518)
259 PRK12898 secA preprotein trans 56.5 60 0.0013 30.8 7.9 43 52-95 143-189 (656)
260 PRK00142 putative rhodanese-re 56.1 18 0.0004 30.9 4.2 40 51-90 169-208 (314)
261 PLN02723 3-mercaptopyruvate su 55.2 29 0.00064 29.5 5.4 39 51-89 267-305 (320)
262 PF13245 AAA_19: Part of AAA d 54.0 38 0.00082 22.5 4.7 58 28-86 16-74 (76)
263 KOG1133 Helicase of the DEAD s 52.6 2.3E+02 0.0049 27.5 11.4 100 35-160 613-720 (821)
264 cd01446 DSP_MapKP N-terminal r 52.3 23 0.0005 25.6 3.7 37 52-88 74-121 (132)
265 PRK11493 sseA 3-mercaptopyruva 50.2 32 0.00069 28.6 4.7 51 37-89 73-124 (281)
266 PRK13767 ATP-dependent helicas 50.2 48 0.001 32.5 6.5 74 24-97 49-143 (876)
267 TIGR00365 monothiol glutaredox 50.1 83 0.0018 21.7 7.0 43 54-97 12-60 (97)
268 COG2519 GCD14 tRNA(1-methylade 50.1 41 0.00088 28.1 5.2 51 21-78 163-213 (256)
269 PLN02723 3-mercaptopyruvate su 49.8 35 0.00075 29.1 4.9 51 37-89 89-140 (320)
270 PRK13104 secA preprotein trans 49.4 76 0.0016 31.3 7.5 44 53-97 123-170 (896)
271 COG0607 PspE Rhodanese-related 49.2 21 0.00046 24.4 3.0 36 52-88 60-96 (110)
272 PTZ00424 helicase 45; Provisio 48.6 77 0.0017 27.3 7.0 99 28-154 71-175 (401)
273 KOG0951 RNA helicase BRR2, DEA 48.4 2E+02 0.0044 29.9 10.3 101 51-181 1357-1489(1674)
274 PRK08762 molybdopterin biosynt 47.1 49 0.0011 28.8 5.6 38 51-88 55-92 (376)
275 PRK12899 secA preprotein trans 46.4 90 0.0019 31.0 7.5 42 54-96 136-181 (970)
276 TIGR03167 tRNA_sel_U_synt tRNA 46.1 56 0.0012 27.9 5.6 36 53-89 74-110 (311)
277 TIGR00696 wecB_tagA_cpsF bacte 46.0 1.4E+02 0.0031 23.2 8.9 64 37-103 35-99 (177)
278 COG1099 Predicted metal-depend 45.9 1.3E+02 0.0027 25.0 7.2 88 27-147 132-219 (254)
279 COG0313 Predicted methyltransf 45.8 83 0.0018 26.6 6.4 61 56-142 32-92 (275)
280 smart00493 TOPRIM topoisomeras 45.4 79 0.0017 20.1 6.3 45 56-102 2-46 (76)
281 COG0194 Gmk Guanylate kinase [ 44.6 62 0.0013 25.8 5.2 79 66-171 56-135 (191)
282 PRK02362 ski2-like helicase; P 44.2 61 0.0013 30.9 6.1 61 25-90 42-106 (737)
283 PRK05597 molybdopterin biosynt 43.8 38 0.00082 29.4 4.3 38 52-89 313-350 (355)
284 KOG0351 ATP-dependent DNA heli 42.7 67 0.0015 31.9 6.2 61 54-136 305-365 (941)
285 PF13361 UvrD_C: UvrD-like hel 42.3 1.4E+02 0.0031 24.3 7.5 62 26-89 50-111 (351)
286 PRK06827 phosphoribosylpyropho 42.2 1.1E+02 0.0023 27.2 6.8 59 54-136 265-328 (382)
287 PF08704 GCD14: tRNA methyltra 41.9 50 0.0011 27.3 4.5 53 20-78 112-164 (247)
288 KOG0342 ATP-dependent RNA heli 41.8 1E+02 0.0022 28.4 6.7 60 50-136 151-214 (543)
289 COG3587 Restriction endonuclea 41.4 24 0.00052 34.5 2.8 43 127-173 483-525 (985)
290 TIGR00963 secA preprotein tran 41.3 1.2E+02 0.0026 29.3 7.4 44 53-97 97-144 (745)
291 cd06533 Glyco_transf_WecG_TagA 40.5 1.7E+02 0.0036 22.4 8.6 64 37-103 33-98 (171)
292 KOG0343 RNA Helicase [RNA proc 40.4 52 0.0011 30.9 4.7 54 36-89 121-180 (758)
293 PF01094 ANF_receptor: Recepto 40.0 1.9E+02 0.004 23.7 7.8 51 22-77 95-149 (348)
294 PF04273 DUF442: Putative phos 38.9 1.4E+02 0.003 21.4 6.0 51 19-72 55-105 (110)
295 PRK07878 molybdopterin biosynt 38.7 45 0.00097 29.3 4.0 38 51-88 341-378 (392)
296 COG0610 Type I site-specific r 38.5 77 0.0017 31.5 5.9 55 125-184 591-651 (962)
297 cd05796 Ribosomal_P0_like Ribo 38.5 1.6E+02 0.0035 22.4 6.7 57 80-172 79-139 (163)
298 PRK14994 SAM-dependent 16S rib 38.2 92 0.002 26.3 5.7 84 24-141 14-98 (287)
299 PRK00254 ski2-like helicase; P 38.2 1.1E+02 0.0023 29.1 6.8 64 24-91 41-108 (720)
300 PRK15327 type III secretion sy 37.6 3E+02 0.0065 24.5 9.3 71 30-103 166-241 (393)
301 KOG0345 ATP-dependent RNA heli 37.2 2E+02 0.0044 26.5 7.8 94 35-154 57-162 (567)
302 PRK11784 tRNA 2-selenouridine 36.7 99 0.0021 26.9 5.8 49 52-102 87-136 (345)
303 KOG0350 DEAD-box ATP-dependent 35.7 84 0.0018 29.1 5.2 96 36-154 198-300 (620)
304 KOG0334 RNA helicase [RNA proc 35.5 79 0.0017 31.4 5.3 65 35-103 416-488 (997)
305 PF01751 Toprim: Toprim domain 34.8 61 0.0013 22.3 3.5 31 57-88 2-32 (100)
306 cd01531 Acr2p Eukaryotic arsen 34.5 68 0.0015 22.3 3.8 38 52-89 61-107 (113)
307 PRK15483 type III restriction- 34.3 42 0.00092 33.3 3.4 44 127-174 501-544 (986)
308 COG1201 Lhr Lhr-like helicases 33.9 61 0.0013 31.6 4.3 103 25-155 40-155 (814)
309 cd01443 Cdc25_Acr2p Cdc25 enzy 33.8 88 0.0019 21.8 4.3 37 53-89 66-109 (113)
310 PF11019 DUF2608: Protein of u 33.8 2.7E+02 0.0058 22.9 8.2 61 22-87 151-211 (252)
311 cd03031 GRX_GRX_like Glutaredo 33.5 1.9E+02 0.0042 21.8 6.3 45 55-100 1-52 (147)
312 COG1204 Superfamily II helicas 33.4 1.4E+02 0.0031 28.9 6.7 38 53-91 76-116 (766)
313 smart00487 DEXDc DEAD-like hel 33.4 1.9E+02 0.0041 21.0 9.2 76 23-103 25-104 (201)
314 KOG0335 ATP-dependent RNA heli 33.2 2E+02 0.0043 26.4 7.2 75 53-154 152-231 (482)
315 PF03808 Glyco_tran_WecB: Glyc 32.9 2.2E+02 0.0048 21.7 8.5 64 37-103 35-100 (172)
316 COG0135 TrpF Phosphoribosylant 32.5 2.7E+02 0.0058 22.5 8.3 59 35-100 39-97 (208)
317 KOG0329 ATP-dependent RNA heli 31.8 88 0.0019 26.6 4.4 74 54-154 111-190 (387)
318 PTZ00135 60S acidic ribosomal 31.8 3.3E+02 0.0071 23.3 8.7 57 80-172 85-144 (310)
319 PHA03371 circ protein; Provisi 30.8 50 0.0011 27.1 2.7 32 141-172 30-75 (240)
320 PRK12904 preprotein translocas 30.7 1.5E+02 0.0033 29.1 6.4 44 53-97 122-169 (830)
321 PRK13720 modulator of post-seg 30.3 61 0.0013 21.1 2.6 46 88-161 1-46 (70)
322 PF09419 PGP_phosphatase: Mito 30.0 2.6E+02 0.0057 21.6 6.7 47 52-103 76-130 (168)
323 PRK05600 thiamine biosynthesis 29.8 1E+02 0.0022 27.0 4.7 37 53-89 332-369 (370)
324 PRK09629 bifunctional thiosulf 28.9 1.1E+02 0.0025 28.6 5.2 49 38-88 210-258 (610)
325 PRK01172 ski2-like helicase; P 28.8 2.1E+02 0.0046 26.8 7.0 61 25-90 40-104 (674)
326 COG0300 DltE Short-chain dehyd 28.6 3.5E+02 0.0076 22.6 8.5 50 53-102 30-79 (265)
327 TIGR01866 cas_Csn2 CRISPR-asso 28.1 2.3E+02 0.005 23.0 6.2 47 35-87 149-200 (216)
328 cd05212 NAD_bind_m-THF_DH_Cycl 27.7 2.6E+02 0.0057 20.8 9.8 51 36-88 12-62 (140)
329 cd03418 GRX_GRXb_1_3_like Glut 27.4 1.6E+02 0.0035 18.4 6.3 44 56-100 2-46 (75)
330 PTZ00062 glutaredoxin; Provisi 27.1 3.3E+02 0.0071 21.8 7.4 42 53-95 112-159 (204)
331 PF04110 APG12: Ubiquitin-like 26.9 1.8E+02 0.004 20.1 4.7 57 19-77 12-74 (87)
332 TIGR02621 cas3_GSU0051 CRISPR- 26.8 1.4E+02 0.003 29.3 5.4 41 52-92 60-127 (844)
333 PRK09200 preprotein translocas 26.6 2.3E+02 0.005 27.6 6.8 43 52-95 118-165 (790)
334 PRK09629 bifunctional thiosulf 26.5 1.3E+02 0.0028 28.3 5.1 51 37-89 67-118 (610)
335 PF09711 Cas_Csn2: CRISPR-asso 25.2 3E+02 0.0065 21.8 6.2 50 35-87 114-168 (188)
336 PF14417 MEDS: MEDS: MEthanoge 25.2 2.7E+02 0.0059 21.5 6.1 50 23-75 20-69 (191)
337 PF07652 Flavi_DEAD: Flaviviru 25.1 1.6E+02 0.0034 22.6 4.4 40 35-77 17-57 (148)
338 cd06375 PBP1_mGluR_groupII Lig 24.8 4.9E+02 0.011 23.1 11.8 75 22-102 148-229 (458)
339 PF02602 HEM4: Uroporphyrinoge 24.8 1.8E+02 0.0038 22.8 5.0 63 36-104 104-168 (231)
340 PLN03142 Probable chromatin-re 24.5 5.1E+02 0.011 26.2 8.9 47 52-100 218-264 (1033)
341 PRK10824 glutaredoxin-4; Provi 24.3 2.8E+02 0.0061 20.0 7.0 45 54-100 15-65 (115)
342 KOG1002 Nucleotide excision re 24.3 2.2E+02 0.0048 26.6 5.9 48 51-102 229-277 (791)
343 cd01080 NAD_bind_m-THF_DH_Cycl 23.9 3.4E+02 0.0073 20.8 8.7 94 36-163 28-122 (168)
344 PF09413 DUF2007: Domain of un 23.8 1.3E+02 0.0027 18.9 3.3 30 56-86 2-31 (67)
345 PRK02269 ribose-phosphate pyro 23.8 3.4E+02 0.0073 23.2 6.8 41 52-92 216-261 (320)
346 TIGR02165 cas_GSU0054 CRISPR-a 23.6 1E+02 0.0023 26.9 3.6 59 107-175 29-93 (465)
347 COG1054 Predicted sulfurtransf 23.1 1.1E+02 0.0023 26.4 3.5 38 51-88 170-207 (308)
348 PRK13958 N-(5'-phosphoribosyl) 23.0 3.9E+02 0.0084 21.2 7.3 38 53-93 53-90 (207)
349 PF12689 Acid_PPase: Acid Phos 22.9 3.6E+02 0.0079 20.8 7.9 67 27-102 102-168 (169)
350 PF13086 AAA_11: AAA domain; P 22.9 3.4E+02 0.0075 20.6 7.0 51 25-75 20-75 (236)
351 PF02142 MGS: MGS-like domain 22.7 85 0.0018 21.4 2.5 40 60-104 17-60 (95)
352 PRK07411 hypothetical protein; 22.5 1.3E+02 0.0027 26.5 4.0 37 52-89 341-377 (390)
353 COG1182 AcpD Acyl carrier prot 21.8 1.1E+02 0.0025 24.5 3.3 19 154-172 98-116 (202)
354 PTZ00240 60S ribosomal protein 21.7 3.5E+02 0.0077 23.4 6.5 57 80-172 92-151 (323)
355 PRK09189 uroporphyrinogen-III 21.4 3.9E+02 0.0085 21.2 6.5 63 36-103 104-169 (240)
356 PLN02363 phosphoribosylanthran 21.4 4.4E+02 0.0096 21.8 6.9 37 53-92 100-136 (256)
357 PRK13103 secA preprotein trans 21.2 3.9E+02 0.0084 26.6 7.2 46 52-98 122-171 (913)
358 PRK00553 ribose-phosphate pyro 21.0 4.1E+02 0.0089 22.9 6.8 61 53-136 218-283 (332)
359 cd01452 VWA_26S_proteasome_sub 20.9 4E+02 0.0087 20.9 6.2 49 53-103 107-160 (187)
360 COG4098 comFA Superfamily II D 20.5 6.2E+02 0.013 22.6 10.6 65 25-93 120-185 (441)
361 PRK12326 preprotein translocas 20.3 4.5E+02 0.0097 25.6 7.3 46 52-98 118-167 (764)
362 KOG0346 RNA helicase [RNA proc 20.2 2E+02 0.0044 26.4 4.7 75 36-137 71-155 (569)
363 PF12683 DUF3798: Protein of u 20.1 2.1E+02 0.0046 24.2 4.6 80 50-163 59-144 (275)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-33 Score=227.88 Aligned_cols=133 Identities=25% Similarity=0.516 Sum_probs=125.2
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
.++|.|||+.++.++.|+++|++|...+.. .+++|||||++.++||.+.++..++ .+..+||+|+++||..+++
T Consensus 237 lEgIKqf~v~ve~EewKfdtLcdLYd~LtI-----tQavIFcnTk~kVdwLtekm~~~nf-tVssmHGDm~qkERd~im~ 310 (400)
T KOG0328|consen 237 LEGIKQFFVAVEKEEWKFDTLCDLYDTLTI-----TQAVIFCNTKRKVDWLTEKMREANF-TVSSMHGDMEQKERDKIMN 310 (400)
T ss_pred hhhhhhheeeechhhhhHhHHHHHhhhheh-----heEEEEecccchhhHHHHHHHhhCc-eeeeccCCcchhHHHHHHH
Confidence 467999999999999999999999998554 8999999999999999999999985 9999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc--cCCC
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAG 176 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~--~r~~ 176 (187)
+||.| +.++|++||+ .+||+|+|.|++|||||+|.+.+.|+|||||. .|+.
T Consensus 311 dFRsg-----------------------~SrvLitTDV----waRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRk 363 (400)
T KOG0328|consen 311 DFRSG-----------------------KSRVLITTDV----WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK 363 (400)
T ss_pred HhhcC-----------------------CceEEEEech----hhccCCcceeEEEEecCCCccHHHHhhhhccccccCCc
Confidence 99999 4999999999 99999999999999999999999999999998 5567
Q ss_pred CeEEEEEE
Q 029806 177 TSFSDIIL 184 (187)
Q Consensus 177 g~~i~~v~ 184 (187)
|++++||.
T Consensus 364 GvainFVk 371 (400)
T KOG0328|consen 364 GVAINFVK 371 (400)
T ss_pred ceEEEEec
Confidence 99999985
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.9e-31 Score=233.08 Aligned_cols=140 Identities=21% Similarity=0.328 Sum_probs=127.2
Q ss_pred CCCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHH
Q 029806 15 SPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT 94 (187)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~ 94 (187)
...+..+|.|....|+... |...|.++|+.+. ..+++|+||||+|++++++|...|+..+ +++..|||+.++++|.
T Consensus 306 ~~~a~~~i~qive~~~~~~-K~~~l~~lL~~~~--~~~~~KvIIFc~tkr~~~~l~~~l~~~~-~~a~~iHGd~sQ~eR~ 381 (519)
T KOG0331|consen 306 ELKANHNIRQIVEVCDETA-KLRKLGKLLEDIS--SDSEGKVIIFCETKRTCDELARNLRRKG-WPAVAIHGDKSQSERD 381 (519)
T ss_pred hhhhhcchhhhhhhcCHHH-HHHHHHHHHHHHh--ccCCCcEEEEecchhhHHHHHHHHHhcC-cceeeecccccHHHHH
Confidence 4466788999998999666 9999999999955 3567899999999999999999999988 5999999999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccC
Q 029806 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 174 (187)
Q Consensus 95 ~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r 174 (187)
.+|+.|+.| +..||||||+ ++||||+|+|++|||||+|.+.++|+||+|||||
T Consensus 382 ~~L~~FreG-----------------------~~~vLVATdV----AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGR 434 (519)
T KOG0331|consen 382 WVLKGFREG-----------------------KSPVLVATDV----AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGR 434 (519)
T ss_pred HHHHhcccC-----------------------CcceEEEccc----ccccCCCccccEEEeCCCCCCHHHHHhhcCcccc
Confidence 999999999 5999999999 9999999999999999999999999999999988
Q ss_pred --CCCeEEEEEEe
Q 029806 175 --AGTSFSDIILL 185 (187)
Q Consensus 175 --~~g~~i~~v~~ 185 (187)
+.|.+++|++.
T Consensus 435 a~~~G~A~tfft~ 447 (519)
T KOG0331|consen 435 AGKKGTAITFFTS 447 (519)
T ss_pred CCCCceEEEEEeH
Confidence 46888887763
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.6e-29 Score=227.23 Aligned_cols=136 Identities=24% Similarity=0.387 Sum_probs=125.1
Q ss_pred CCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHH
Q 029806 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTL 95 (187)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~ 95 (187)
......|.|+|+.++..+.|+..|..+++. ....++||||+++..+++++..|...| +++..|||+|++++|.+
T Consensus 241 ~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~-----~~~~~~IVF~~tk~~~~~l~~~l~~~g-~~~~~lhG~l~q~~R~~ 314 (513)
T COG0513 241 ERTLKKIKQFYLEVESEEEKLELLLKLLKD-----EDEGRVIVFVRTKRLVEELAESLRKRG-FKVAALHGDLPQEERDR 314 (513)
T ss_pred cccccCceEEEEEeCCHHHHHHHHHHHHhc-----CCCCeEEEEeCcHHHHHHHHHHHHHCC-CeEEEecCCCCHHHHHH
Confidence 347899999999999865699999999998 334589999999999999999999999 69999999999999999
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC
Q 029806 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 175 (187)
Q Consensus 96 ~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~ 175 (187)
++++|++|. .++|||||+ ++||||+|+|++|||||+|.+++.|+||+||+||.
T Consensus 315 ~l~~F~~g~-----------------------~~vLVaTDv----aaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRa 367 (513)
T COG0513 315 ALEKFKDGE-----------------------LRVLVATDV----AARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRA 367 (513)
T ss_pred HHHHHHcCC-----------------------CCEEEEech----hhccCCccccceeEEccCCCCHHHheeccCccccC
Confidence 999999984 999999999 99999999999999999999999999999999665
Q ss_pred --CCeEEEEEE
Q 029806 176 --GTSFSDIIL 184 (187)
Q Consensus 176 --~g~~i~~v~ 184 (187)
.|.+++|++
T Consensus 368 G~~G~ai~fv~ 378 (513)
T COG0513 368 GRKGVAISFVT 378 (513)
T ss_pred CCCCeEEEEeC
Confidence 688888875
No 4
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9.9e-30 Score=216.24 Aligned_cols=134 Identities=23% Similarity=0.360 Sum_probs=125.2
Q ss_pred CCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHH
Q 029806 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 18 ~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
.-+++.|+|+.++..+ |-..|..++++ ..+..+||||++..+.++++-.|+..| +.+..|||+|++..|...+
T Consensus 271 tv~~lkQ~ylfv~~k~-K~~yLV~ll~e-----~~g~s~iVF~~t~~tt~~la~~L~~lg-~~a~~LhGqmsq~~Rlg~l 343 (476)
T KOG0330|consen 271 TVDHLKQTYLFVPGKD-KDTYLVYLLNE-----LAGNSVIVFCNTCNTTRFLALLLRNLG-FQAIPLHGQMSQSKRLGAL 343 (476)
T ss_pred chHHhhhheEeccccc-cchhHHHHHHh-----hcCCcEEEEEeccchHHHHHHHHHhcC-cceecccchhhHHHHHHHH
Confidence 4467999999999998 99999999998 445899999999999999999999999 6999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc--cCC
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAA 175 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~--~r~ 175 (187)
+.|+++ ...||+|||+ ++||+|+|.|++|||||+|.+..+|+||+||+ .|+
T Consensus 344 ~~Fk~~-----------------------~r~iLv~TDV----aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGr 396 (476)
T KOG0330|consen 344 NKFKAG-----------------------ARSILVCTDV----ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGR 396 (476)
T ss_pred HHHhcc-----------------------CCcEEEecch----hcccCCCCCceEEEecCCCCcHHHHHHHcccccccCC
Confidence 999999 4999999999 99999999999999999999999999999999 456
Q ss_pred CCeEEEEEEe
Q 029806 176 GTSFSDIILL 185 (187)
Q Consensus 176 ~g~~i~~v~~ 185 (187)
+|.+|++|+-
T Consensus 397 sG~~ItlVtq 406 (476)
T KOG0330|consen 397 SGKAITLVTQ 406 (476)
T ss_pred CcceEEEEeh
Confidence 7999999874
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.96 E-value=8.9e-29 Score=216.71 Aligned_cols=133 Identities=20% Similarity=0.315 Sum_probs=123.5
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
.+.+.|.+..+++++ |...|.++|+. +...++|||+|+++.+++|++.|.+.| +++..|||+-++++|..+|+
T Consensus 489 ~~rveQ~v~m~~ed~-k~kkL~eil~~-----~~~ppiIIFvN~kk~~d~lAk~LeK~g-~~~~tlHg~k~qeQRe~aL~ 561 (673)
T KOG0333|consen 489 TPRVEQKVEMVSEDE-KRKKLIEILES-----NFDPPIIIFVNTKKGADALAKILEKAG-YKVTTLHGGKSQEQRENALA 561 (673)
T ss_pred ccchheEEEEecchH-HHHHHHHHHHh-----CCCCCEEEEEechhhHHHHHHHHhhcc-ceEEEeeCCccHHHHHHHHH
Confidence 356889999999988 89999999998 456899999999999999999999999 69999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC--C
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--G 176 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~--~ 176 (187)
.||.+. .+||||||+ ++||||+|+|++|||||++.+.++|+|||||+||. .
T Consensus 562 ~fr~~t-----------------------~dIlVaTDv----AgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~ 614 (673)
T KOG0333|consen 562 DFREGT-----------------------GDILVATDV----AGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKS 614 (673)
T ss_pred HHHhcC-----------------------CCEEEEecc----cccCCCCCccceeeecchhhhHHHHHHHhccccccccC
Confidence 999984 999999999 99999999999999999999999999999999555 5
Q ss_pred CeEEEEEEe
Q 029806 177 TSFSDIILL 185 (187)
Q Consensus 177 g~~i~~v~~ 185 (187)
|.+++|++.
T Consensus 615 GtaiSflt~ 623 (673)
T KOG0333|consen 615 GTAISFLTP 623 (673)
T ss_pred ceeEEEecc
Confidence 999999873
No 6
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=8.6e-29 Score=209.71 Aligned_cols=134 Identities=22% Similarity=0.371 Sum_probs=123.4
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
-+..+|.|+|+.|...+.|.+.|.++...+.. ++.||||.|++++.|++..|+..|+ .+..|||+|..++|..+
T Consensus 299 l~L~~IkQlyv~C~~~~~K~~~l~~lyg~~ti-----gqsiIFc~tk~ta~~l~~~m~~~Gh-~V~~l~G~l~~~~R~~i 372 (477)
T KOG0332|consen 299 LALDNIKQLYVLCACRDDKYQALVNLYGLLTI-----GQSIIFCHTKATAMWLYEEMRAEGH-QVSLLHGDLTVEQRAAI 372 (477)
T ss_pred ccccchhhheeeccchhhHHHHHHHHHhhhhh-----hheEEEEeehhhHHHHHHHHHhcCc-eeEEeeccchhHHHHHH
Confidence 35678999999999999999999998887554 8999999999999999999999996 99999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCC------ChhHHHHhhh
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMT 170 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~------~~~~y~~R~G 170 (187)
+++||.| +.++||+|++ .+||||++.|++|||||+|. +.++|+||||
T Consensus 373 i~~Fr~g-----------------------~~kVLitTnV----~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiG 425 (477)
T KOG0332|consen 373 IDRFREG-----------------------KEKVLITTNV----CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIG 425 (477)
T ss_pred HHHHhcC-----------------------cceEEEEech----hhcccccceEEEEEecCCccccCCCCCHHHHHHHhc
Confidence 9999999 4999999999 99999999999999999996 6899999999
Q ss_pred hccC--CCCeEEEEE
Q 029806 171 TCLA--AGTSFSDII 183 (187)
Q Consensus 171 R~~r--~~g~~i~~v 183 (187)
|+|| +.|.++++|
T Consensus 426 RtGRFGkkG~a~n~v 440 (477)
T KOG0332|consen 426 RTGRFGKKGLAINLV 440 (477)
T ss_pred ccccccccceEEEee
Confidence 9954 558888876
No 7
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3.1e-28 Score=203.26 Aligned_cols=133 Identities=23% Similarity=0.430 Sum_probs=124.2
Q ss_pred CCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHH
Q 029806 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 18 ~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
++.++.|||..+.+.+ |.--|..|+..+.. .+.|||||+..+++.+++++.+.|+ .++++|+.|-++.|..+.
T Consensus 293 tl~GvtQyYafV~e~q-KvhCLntLfskLqI-----NQsIIFCNS~~rVELLAkKITelGy-scyyiHakM~Q~hRNrVF 365 (459)
T KOG0326|consen 293 TLKGVTQYYAFVEERQ-KVHCLNTLFSKLQI-----NQSIIFCNSTNRVELLAKKITELGY-SCYYIHAKMAQEHRNRVF 365 (459)
T ss_pred hhcchhhheeeechhh-hhhhHHHHHHHhcc-----cceEEEeccchHhHHHHHHHHhccc-hhhHHHHHHHHhhhhhhh
Confidence 4578999999999988 99999999988555 8999999999999999999999995 999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC-
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG- 176 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~- 176 (187)
..||+| ..+.|||||+ +-||+|++.|++|||||+|.++++|+|||||.||-+
T Consensus 366 HdFr~G-----------------------~crnLVctDL----~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGh 418 (459)
T KOG0326|consen 366 HDFRNG-----------------------KCRNLVCTDL----FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH 418 (459)
T ss_pred hhhhcc-----------------------ccceeeehhh----hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCC
Confidence 999999 4999999999 999999999999999999999999999999996665
Q ss_pred -CeEEEEEE
Q 029806 177 -TSFSDIIL 184 (187)
Q Consensus 177 -g~~i~~v~ 184 (187)
|.+|++++
T Consensus 419 lGlAInLit 427 (459)
T KOG0326|consen 419 LGLAINLIT 427 (459)
T ss_pred cceEEEEEe
Confidence 89999886
No 8
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.8e-27 Score=199.43 Aligned_cols=140 Identities=22% Similarity=0.322 Sum_probs=128.8
Q ss_pred CCCCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHH
Q 029806 14 QSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER 93 (187)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR 93 (187)
...+..+.+.+.|+.|+... |-..|..+|+. +.++ ..+.++||+|+..+++.|+..|...+ +.+..||+.|++++|
T Consensus 218 ~~vstvetL~q~yI~~~~~v-kdaYLv~~Lr~-~~~~-~~~simIFvnttr~cQ~l~~~l~~le-~r~~~lHs~m~Q~eR 293 (442)
T KOG0340|consen 218 DGVSTVETLYQGYILVSIDV-KDAYLVHLLRD-FENK-ENGSIMIFVNTTRECQLLSMTLKNLE-VRVVSLHSQMPQKER 293 (442)
T ss_pred CCCCchhhhhhheeecchhh-hHHHHHHHHhh-hhhc-cCceEEEEeehhHHHHHHHHHHhhhc-eeeeehhhcchHHHH
Confidence 34467788999999999988 99999999998 3322 67899999999999999999999998 799999999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc-
Q 029806 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC- 172 (187)
Q Consensus 94 ~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~- 172 (187)
...+-+||.+. .++|||||+ ++||+|+|.|++|||||+|.++.+|+||+||+
T Consensus 294 ~~aLsrFrs~~-----------------------~~iliaTDV----AsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtA 346 (442)
T KOG0340|consen 294 LAALSRFRSNA-----------------------ARILIATDV----ASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTA 346 (442)
T ss_pred HHHHHHHhhcC-----------------------ccEEEEech----hhcCCCCCceeEEEecCCCCCHHHHHHhhcchh
Confidence 99999999985 999999999 99999999999999999999999999999999
Q ss_pred -cCCCCeEEEEEE
Q 029806 173 -LAAGTSFSDIIL 184 (187)
Q Consensus 173 -~r~~g~~i~~v~ 184 (187)
+|+.|.+++|++
T Consensus 347 RAGR~G~aiSivt 359 (442)
T KOG0340|consen 347 RAGRKGMAISIVT 359 (442)
T ss_pred cccCCcceEEEec
Confidence 667799999986
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1.3e-26 Score=203.58 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=117.4
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
...+.+.+..+...+ |+..|.++++. ....++||||+++..++.++..|...| +.+..+||+|+.++|..+++
T Consensus 227 ~~~i~~~~~~~~~~~-k~~~l~~ll~~-----~~~~~~lVF~~t~~~~~~l~~~L~~~g-~~v~~lhg~~~~~~R~~~l~ 299 (423)
T PRK04837 227 GHRIKEELFYPSNEE-KMRLLQTLIEE-----EWPDRAIIFANTKHRCEEIWGHLAADG-HRVGLLTGDVAQKKRLRILE 299 (423)
T ss_pred CCceeEEEEeCCHHH-HHHHHHHHHHh-----cCCCeEEEEECCHHHHHHHHHHHHhCC-CcEEEecCCCChhHHHHHHH
Confidence 356777777666655 99999999877 345799999999999999999999988 69999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC--
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-- 176 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~-- 176 (187)
+|++|+ .++|||||+ ++||||+|+|++|||||+|.+.++|+||+||+||.+
T Consensus 300 ~F~~g~-----------------------~~vLVaTdv----~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~ 352 (423)
T PRK04837 300 EFTRGD-----------------------LDILVATDV----AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGAS 352 (423)
T ss_pred HHHcCC-----------------------CcEEEEech----hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCC
Confidence 999995 999999999 999999999999999999999999999999997764
Q ss_pred CeEEEEEE
Q 029806 177 TSFSDIIL 184 (187)
Q Consensus 177 g~~i~~v~ 184 (187)
|.+++|++
T Consensus 353 G~ai~~~~ 360 (423)
T PRK04837 353 GHSISLAC 360 (423)
T ss_pred eeEEEEeC
Confidence 67777654
No 10
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=3.4e-26 Score=202.89 Aligned_cols=131 Identities=23% Similarity=0.358 Sum_probs=119.1
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
...+.++|+.++..+ |+..|..++.. ....++||||+++..++.+++.|.+.+ +.+..+||+|++.+|..+++
T Consensus 214 ~~~i~~~~~~~~~~~-k~~~l~~ll~~-----~~~~~~lVF~~t~~~~~~l~~~L~~~~-~~v~~~hg~~~~~eR~~~l~ 286 (460)
T PRK11776 214 LPAIEQRFYEVSPDE-RLPALQRLLLH-----HQPESCVVFCNTKKECQEVADALNAQG-FSALALHGDLEQRDRDQVLV 286 (460)
T ss_pred CCCeeEEEEEeCcHH-HHHHHHHHHHh-----cCCCceEEEECCHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHH
Confidence 455889999998887 99999999977 345789999999999999999999998 69999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC--
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-- 176 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~-- 176 (187)
.|++|. .++||||++ ++||+|+|++++|||||+|.+.++|+||+||+||.+
T Consensus 287 ~F~~g~-----------------------~~vLVaTdv----~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~ 339 (460)
T PRK11776 287 RFANRS-----------------------CSVLVATDV----AARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSK 339 (460)
T ss_pred HHHcCC-----------------------CcEEEEecc----cccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCc
Confidence 999984 999999999 999999999999999999999999999999998875
Q ss_pred CeEEEEE
Q 029806 177 TSFSDII 183 (187)
Q Consensus 177 g~~i~~v 183 (187)
|.+++|+
T Consensus 340 G~ai~l~ 346 (460)
T PRK11776 340 GLALSLV 346 (460)
T ss_pred ceEEEEE
Confidence 5555554
No 11
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=5.8e-26 Score=199.90 Aligned_cols=135 Identities=19% Similarity=0.322 Sum_probs=120.7
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
....++.|++..++....|...|..+++. ....++||||+++..++.++..|...+ +.+..+||+|+.++|..+
T Consensus 214 ~~~~~i~~~~~~~~~~~~k~~~l~~l~~~-----~~~~~~lVF~~s~~~~~~l~~~L~~~~-~~~~~l~g~~~~~~R~~~ 287 (434)
T PRK11192 214 RERKKIHQWYYRADDLEHKTALLCHLLKQ-----PEVTRSIVFVRTRERVHELAGWLRKAG-INCCYLEGEMVQAKRNEA 287 (434)
T ss_pred ccccCceEEEEEeCCHHHHHHHHHHHHhc-----CCCCeEEEEeCChHHHHHHHHHHHhCC-CCEEEecCCCCHHHHHHH
Confidence 34567888888888766699999988876 456899999999999999999999988 799999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
+++|+.|. .+|||||++ ++||+|+|++++|||||+|.+.+.|+||+||+||.+
T Consensus 288 l~~f~~G~-----------------------~~vLVaTd~----~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g 340 (434)
T PRK11192 288 IKRLTDGR-----------------------VNVLVATDV----AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAG 340 (434)
T ss_pred HHHHhCCC-----------------------CcEEEEccc----cccCccCCCCCEEEEECCCCCHHHHhhcccccccCC
Confidence 99999995 999999999 999999999999999999999999999999997764
Q ss_pred --CeEEEEEE
Q 029806 177 --TSFSDIIL 184 (187)
Q Consensus 177 --g~~i~~v~ 184 (187)
|.+++++.
T Consensus 341 ~~g~ai~l~~ 350 (434)
T PRK11192 341 RKGTAISLVE 350 (434)
T ss_pred CCceEEEEec
Confidence 66676653
No 12
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=1.2e-25 Score=203.58 Aligned_cols=136 Identities=21% Similarity=0.324 Sum_probs=120.7
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
....++.+.+..+...+ |...|.++++.+. ....++||||++++.++.++..|...+ +.+..+||+|++++|..+
T Consensus 345 ~~~~~i~q~~~~~~~~~-k~~~L~~ll~~~~---~~~~k~LIF~~t~~~a~~l~~~L~~~g-~~~~~ihg~~~~~eR~~i 419 (545)
T PTZ00110 345 TACHNIKQEVFVVEEHE-KRGKLKMLLQRIM---RDGDKILIFVETKKGADFLTKELRLDG-WPALCIHGDKKQEERTWV 419 (545)
T ss_pred ccCCCeeEEEEEEechh-HHHHHHHHHHHhc---ccCCeEEEEecChHHHHHHHHHHHHcC-CcEEEEECCCcHHHHHHH
Confidence 34567888888887766 9999999998743 246899999999999999999999888 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC-
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA- 175 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~- 175 (187)
+++|++|. .+|||||++ ++||||+|+|++|||||+|.+.++|+||+||+||.
T Consensus 420 l~~F~~G~-----------------------~~ILVaTdv----~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 420 LNEFKTGK-----------------------SPIMIATDV----ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred HHHHhcCC-----------------------CcEEEEcch----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC
Confidence 99999984 999999999 99999999999999999999999999999999776
Q ss_pred -CCeEEEEEE
Q 029806 176 -GTSFSDIIL 184 (187)
Q Consensus 176 -~g~~i~~v~ 184 (187)
.|.+++|++
T Consensus 473 ~~G~ai~~~~ 482 (545)
T PTZ00110 473 AKGASYTFLT 482 (545)
T ss_pred CCceEEEEEC
Confidence 477777654
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.93 E-value=1.3e-25 Score=199.30 Aligned_cols=134 Identities=19% Similarity=0.278 Sum_probs=118.7
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
....++.+++..++... |...|..++.. ....++||||+++..++.+++.|.+.+ +.+..+||+|+.++|..+
T Consensus 215 ~~~~~i~~~~~~~~~~~-k~~~l~~l~~~-----~~~~~~lVF~~t~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~ 287 (456)
T PRK10590 215 TASEQVTQHVHFVDKKR-KRELLSQMIGK-----GNWQQVLVFTRTKHGANHLAEQLNKDG-IRSAAIHGNKSQGARTRA 287 (456)
T ss_pred ccccceeEEEEEcCHHH-HHHHHHHHHHc-----CCCCcEEEEcCcHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHH
Confidence 34567888888877766 88888887766 456799999999999999999999988 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
++.|++|. .+|||||++ ++||+|+|+|++|||||+|.+.++|+||+||+||.+
T Consensus 288 l~~F~~g~-----------------------~~iLVaTdv----~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g 340 (456)
T PRK10590 288 LADFKSGD-----------------------IRVLVATDI----AARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAA 340 (456)
T ss_pred HHHHHcCC-----------------------CcEEEEccH----HhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCC
Confidence 99999984 999999999 999999999999999999999999999999997764
Q ss_pred --CeEEEEEE
Q 029806 177 --TSFSDIIL 184 (187)
Q Consensus 177 --g~~i~~v~ 184 (187)
|.+++|++
T Consensus 341 ~~G~ai~l~~ 350 (456)
T PRK10590 341 ATGEALSLVC 350 (456)
T ss_pred CCeeEEEEec
Confidence 66666654
No 14
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.93 E-value=5.5e-26 Score=197.79 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=127.3
Q ss_pred CCCCCCCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCH
Q 029806 11 PPCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 90 (187)
Q Consensus 11 ~~~~~~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~ 90 (187)
-....+.+.+.+.|.|+.++.+. ++-.|..+|++. ....++||||+|...+..+++.|.... +++.-+||++++
T Consensus 293 ~d~~~~~The~l~Qgyvv~~~~~-~f~ll~~~LKk~----~~~~KiiVF~sT~~~vk~~~~lL~~~d-lpv~eiHgk~~Q 366 (543)
T KOG0342|consen 293 DDGGERETHERLEQGYVVAPSDS-RFSLLYTFLKKN----IKRYKIIVFFSTCMSVKFHAELLNYID-LPVLEIHGKQKQ 366 (543)
T ss_pred CCCCCcchhhcccceEEeccccc-hHHHHHHHHHHh----cCCceEEEEechhhHHHHHHHHHhhcC-CchhhhhcCCcc
Confidence 34566778899999999999988 899999999882 223899999999999999999999887 799999999999
Q ss_pred HHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhh
Q 029806 91 TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMT 170 (187)
Q Consensus 91 ~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~G 170 (187)
..|..+..+|++.+ .-||||||+ ++||+|+|+|++||.||+|.+++.|+||+|
T Consensus 367 ~kRT~~~~~F~kae-----------------------sgIL~cTDV----aARGlD~P~V~~VvQ~~~P~d~~~YIHRvG 419 (543)
T KOG0342|consen 367 NKRTSTFFEFCKAE-----------------------SGILVCTDV----AARGLDIPDVDWVVQYDPPSDPEQYIHRVG 419 (543)
T ss_pred cccchHHHHHhhcc-----------------------cceEEecch----hhccCCCCCceEEEEeCCCCCHHHHHHHhc
Confidence 99999999999985 889999999 999999999999999999999999999999
Q ss_pred hccCCCCeEEEEEEe
Q 029806 171 TCLAAGTSFSDIILL 185 (187)
Q Consensus 171 R~~r~~g~~i~~v~~ 185 (187)
|++|.++.|-.++.+
T Consensus 420 RTaR~gk~G~alL~l 434 (543)
T KOG0342|consen 420 RTAREGKEGKALLLL 434 (543)
T ss_pred cccccCCCceEEEEe
Confidence 998887666655544
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=2e-25 Score=203.10 Aligned_cols=133 Identities=18% Similarity=0.266 Sum_probs=119.2
Q ss_pred CCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHH
Q 029806 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 18 ~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
....+.|.+..+...+ |+..|..+++. ....++||||+++..++.+++.|.+.+ +.+..+||+|+..+|..++
T Consensus 228 ~~~~i~q~~~~~~~~~-k~~~L~~ll~~-----~~~~k~LVF~nt~~~ae~l~~~L~~~g-~~v~~lhg~l~~~eR~~il 300 (572)
T PRK04537 228 TAARVRQRIYFPADEE-KQTLLLGLLSR-----SEGARTMVFVNTKAFVERVARTLERHG-YRVGVLSGDVPQKKRESLL 300 (572)
T ss_pred cccceeEEEEecCHHH-HHHHHHHHHhc-----ccCCcEEEEeCCHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHH
Confidence 3456788887777666 99998888876 456899999999999999999999988 6999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC--
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-- 175 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~-- 175 (187)
+.|++|+ .+|||||++ ++||||+|+|++|||||+|.+.++|+||+||+||.
T Consensus 301 ~~Fr~G~-----------------------~~VLVaTdv----~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~ 353 (572)
T PRK04537 301 NRFQKGQ-----------------------LEILVATDV----AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGE 353 (572)
T ss_pred HHHHcCC-----------------------CeEEEEehh----hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCC
Confidence 9999984 999999999 99999999999999999999999999999999765
Q ss_pred CCeEEEEEE
Q 029806 176 GTSFSDIIL 184 (187)
Q Consensus 176 ~g~~i~~v~ 184 (187)
.|.+++|++
T Consensus 354 ~G~ai~~~~ 362 (572)
T PRK04537 354 EGDAISFAC 362 (572)
T ss_pred CceEEEEec
Confidence 578888764
No 16
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.93 E-value=1.1e-25 Score=198.34 Aligned_cols=139 Identities=19% Similarity=0.274 Sum_probs=125.5
Q ss_pred CCCCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHH
Q 029806 14 QSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETE 92 (187)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~e 92 (187)
...+.|.+++|+|+.++-.+ |++.|..+++. +...+.|||.+|.+++.+++..+.+. ++++...|||.|++..
T Consensus 280 a~~atP~~L~Q~y~~v~l~~-Ki~~L~sFI~s-----hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~ 353 (758)
T KOG0343|consen 280 AVAATPSNLQQSYVIVPLED-KIDMLWSFIKS-----HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKK 353 (758)
T ss_pred ccccChhhhhheEEEEehhh-HHHHHHHHHHh-----ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHH
Confidence 34688999999999999999 99999999999 77899999999999999999999876 3489999999999999
Q ss_pred HHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 93 RTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 93 R~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
|.+++++|-+. +-.||+|||+ ++||||||.|++||.||.|.++++|+||+||+
T Consensus 354 R~ev~~~F~~~-----------------------~~~vLF~TDv----~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRt 406 (758)
T KOG0343|consen 354 RIEVYKKFVRK-----------------------RAVVLFCTDV----AARGLDFPAVDWVIQVDCPEDVDTYIHRVGRT 406 (758)
T ss_pred HHHHHHHHHHh-----------------------cceEEEeehh----hhccCCCcccceEEEecCchhHHHHHHHhhhh
Confidence 99999999986 4789999999 99999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEe
Q 029806 173 LAAGTSFSDIILL 185 (187)
Q Consensus 173 ~r~~g~~i~~v~~ 185 (187)
+|....|-+++.+
T Consensus 407 AR~~~~G~sll~L 419 (758)
T KOG0343|consen 407 ARYKERGESLLML 419 (758)
T ss_pred hcccCCCceEEEE
Confidence 7776444444433
No 17
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=1.1e-24 Score=194.04 Aligned_cols=131 Identities=22% Similarity=0.297 Sum_probs=117.1
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
..++.+++..+...+ |...|.+++.. ....++||||+++.+++.+++.|...+ +.+..+||+|+.++|.++++
T Consensus 307 ~~~~~~~~~~~~~~~-k~~~l~~ll~~-----~~~~~~IVF~~s~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~~ 379 (475)
T PRK01297 307 SDTVEQHVYAVAGSD-KYKLLYNLVTQ-----NPWERVMVFANRKDEVRRIEERLVKDG-INAAQLSGDVPQHKRIKTLE 379 (475)
T ss_pred CCcccEEEEEecchh-HHHHHHHHHHh-----cCCCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHH
Confidence 355677777777766 88899888877 455799999999999999999999888 69999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC--
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-- 176 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~-- 176 (187)
.|++|+ .++||||++ ++||||+|++++|||||+|.+..+|+||+||+||.+
T Consensus 380 ~Fr~G~-----------------------~~vLvaT~~----l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~ 432 (475)
T PRK01297 380 GFREGK-----------------------IRVLVATDV----AGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGAS 432 (475)
T ss_pred HHhCCC-----------------------CcEEEEccc----cccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCC
Confidence 999995 999999999 999999999999999999999999999999998875
Q ss_pred CeEEEEE
Q 029806 177 TSFSDII 183 (187)
Q Consensus 177 g~~i~~v 183 (187)
|.+++|+
T Consensus 433 g~~i~~~ 439 (475)
T PRK01297 433 GVSISFA 439 (475)
T ss_pred ceEEEEe
Confidence 5666664
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=1.1e-24 Score=196.32 Aligned_cols=134 Identities=21% Similarity=0.305 Sum_probs=116.4
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l 97 (187)
...+.+.+..+...+ |...|.++++... ....++||||+++..++.+++.|... + +.+..+||+|+.++|..++
T Consensus 337 ~~~v~q~~~~~~~~~-k~~~l~~~l~~~~---~~~~~~iVFv~s~~~a~~l~~~L~~~~g-~~~~~~Hg~~~~~eR~~il 411 (518)
T PLN00206 337 NKAVKQLAIWVETKQ-KKQKLFDILKSKQ---HFKPPAVVFVSSRLGADLLANAITVVTG-LKALSIHGEKSMKERREVM 411 (518)
T ss_pred CcceeEEEEeccchh-HHHHHHHHHHhhc---ccCCCEEEEcCCchhHHHHHHHHhhccC-cceEEeeCCCCHHHHHHHH
Confidence 355778888887766 8888888887621 23468999999999999999999764 5 6999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC-
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG- 176 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~- 176 (187)
++|++|+ .+|||||++ ++||+|+|+|++|||||+|.+.++|+||+||+||.+
T Consensus 412 ~~Fr~G~-----------------------~~ILVaTdv----l~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~ 464 (518)
T PLN00206 412 KSFLVGE-----------------------VPVIVATGV----LGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGE 464 (518)
T ss_pred HHHHCCC-----------------------CCEEEEecH----hhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCC
Confidence 9999994 999999999 999999999999999999999999999999998764
Q ss_pred -CeEEEEEE
Q 029806 177 -TSFSDIIL 184 (187)
Q Consensus 177 -g~~i~~v~ 184 (187)
|.+++|+.
T Consensus 465 ~G~ai~f~~ 473 (518)
T PLN00206 465 KGTAIVFVN 473 (518)
T ss_pred CeEEEEEEc
Confidence 66776653
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.92 E-value=1e-24 Score=200.19 Aligned_cols=133 Identities=20% Similarity=0.281 Sum_probs=119.3
Q ss_pred CCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHH
Q 029806 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 18 ~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
....+.|.|+.+...+ |...|.+++.. ....++||||+++..++.++..|.+.| +.+..+||+|++.+|..++
T Consensus 216 ~~~~i~q~~~~v~~~~-k~~~L~~~L~~-----~~~~~~IVF~~tk~~a~~l~~~L~~~g-~~~~~lhgd~~q~~R~~il 288 (629)
T PRK11634 216 TRPDISQSYWTVWGMR-KNEALVRFLEA-----EDFDAAIIFVRTKNATLEVAEALERNG-YNSAALNGDMNQALREQTL 288 (629)
T ss_pred cCCceEEEEEEechhh-HHHHHHHHHHh-----cCCCCEEEEeccHHHHHHHHHHHHhCC-CCEEEeeCCCCHHHHHHHH
Confidence 3456888888888777 99999999876 345789999999999999999999998 5999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC-
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG- 176 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~- 176 (187)
++|+.|+ .+|||||++ ++||||+|+|++|||||+|.+.++|+||+||+||.+
T Consensus 289 ~~Fr~G~-----------------------~~ILVATdv----~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr 341 (629)
T PRK11634 289 ERLKDGR-----------------------LDILIATDV----AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341 (629)
T ss_pred HHHhCCC-----------------------CCEEEEcch----HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCC
Confidence 9999984 999999999 999999999999999999999999999999997775
Q ss_pred -CeEEEEEE
Q 029806 177 -TSFSDIIL 184 (187)
Q Consensus 177 -g~~i~~v~ 184 (187)
|.+++|+.
T Consensus 342 ~G~ai~~v~ 350 (629)
T PRK11634 342 AGRALLFVE 350 (629)
T ss_pred cceEEEEec
Confidence 66666653
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=4.3e-25 Score=191.59 Aligned_cols=134 Identities=19% Similarity=0.287 Sum_probs=121.6
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTL 95 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~ 95 (187)
.+|..+..+|+.|+.+. |+..|.++|.. ...+++|||..|...++.....|... +.+.++.+||.|.+..|..
T Consensus 225 ~tPS~L~~~Y~v~~a~e-K~~~lv~~L~~-----~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k 298 (567)
T KOG0345|consen 225 ATPSSLALEYLVCEADE-KLSQLVHLLNN-----NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAK 298 (567)
T ss_pred cCchhhcceeeEecHHH-HHHHHHHHHhc-----cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHH
Confidence 47888999999999998 99999999988 55699999999999999999999765 5579999999999999999
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC
Q 029806 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 175 (187)
Q Consensus 96 ~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~ 175 (187)
++++|++. +-.+|+|||+ ++||||+|+|++||+||+|.+++.|.||+||++|.
T Consensus 299 ~~~~F~~~-----------------------~~~vl~~TDV----aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~ 351 (567)
T KOG0345|consen 299 VLEAFRKL-----------------------SNGVLFCTDV----AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARA 351 (567)
T ss_pred HHHHHHhc-----------------------cCceEEeehh----hhccCCCCCceEEEecCCCCChhHHHhhcchhhhc
Confidence 99999996 4779999999 99999999999999999999999999999999665
Q ss_pred C--CeEEEEE
Q 029806 176 G--TSFSDII 183 (187)
Q Consensus 176 ~--g~~i~~v 183 (187)
+ |.++.|+
T Consensus 352 gr~G~Aivfl 361 (567)
T KOG0345|consen 352 GREGNAIVFL 361 (567)
T ss_pred cCccceEEEe
Confidence 5 6666554
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=4.9e-25 Score=193.12 Aligned_cols=138 Identities=20% Similarity=0.314 Sum_probs=122.8
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcC----CCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAG----RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETE 92 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~----~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~e 92 (187)
+...++.|....|.+.+ |...|.++|...... ...+.+++|||++++.++.+..+|...+ +++..+||+.++.+
T Consensus 298 ~~~~ni~q~i~~V~~~~-kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~-~~~~sIhg~~tq~e 375 (482)
T KOG0335|consen 298 STSENITQKILFVNEME-KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG-YPAKSIHGDRTQIE 375 (482)
T ss_pred cccccceeEeeeecchh-hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC-CCceeecchhhhhH
Confidence 56788999999999988 999999999863321 1122489999999999999999999999 59999999999999
Q ss_pred HHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 93 RTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 93 R~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
|.+.++.|+.| +.++||||++ ++||||+|+|.||||||+|.+..+|+|||||+
T Consensus 376 r~~al~~Fr~g-----------------------~~pvlVaT~V----aaRGlDi~~V~hVInyDmP~d~d~YvHRIGRT 428 (482)
T KOG0335|consen 376 REQALNDFRNG-----------------------KAPVLVATNV----AARGLDIPNVKHVINYDMPADIDDYVHRIGRT 428 (482)
T ss_pred HHHHHHHhhcC-----------------------CcceEEEehh----hhcCCCCCCCceeEEeecCcchhhHHHhcccc
Confidence 99999999999 5999999999 99999999999999999999999999999999
Q ss_pred cCC--CCeEEEEE
Q 029806 173 LAA--GTSFSDII 183 (187)
Q Consensus 173 ~r~--~g~~i~~v 183 (187)
||. +|.+++|+
T Consensus 429 GR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 429 GRVGNGGRATSFF 441 (482)
T ss_pred ccCCCCceeEEEe
Confidence 555 58888776
No 22
>PTZ00424 helicase 45; Provisional
Probab=99.92 E-value=2.9e-24 Score=186.68 Aligned_cols=133 Identities=28% Similarity=0.537 Sum_probs=118.6
Q ss_pred CCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHH
Q 029806 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 18 ~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
...++.++++.++..+.+...+.++++. ....++||||+++..++.+++.|...+ +.+..+||+|+.++|..++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~ivF~~t~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~R~~i~ 310 (401)
T PTZ00424 237 TLEGIRQFYVAVEKEEWKFDTLCDLYET-----LTITQAIIYCNTRRKVDYLTKKMHERD-FTVSCMHGDMDQKDRDLIM 310 (401)
T ss_pred ccCCceEEEEecChHHHHHHHHHHHHHh-----cCCCeEEEEecCcHHHHHHHHHHHHCC-CcEEEEeCCCCHHHHHHHH
Confidence 4567888988888766688888888776 345789999999999999999999888 6999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC-
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG- 176 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~- 176 (187)
+.|++|. .++||||++ +++|+|+|++++||+||+|.+..+|+||+||+||.+
T Consensus 311 ~~f~~g~-----------------------~~vLvaT~~----l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 311 REFRSGS-----------------------TRVLITTDL----LARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR 363 (401)
T ss_pred HHHHcCC-----------------------CCEEEEccc----ccCCcCcccCCEEEEECCCCCHHHEeecccccccCCC
Confidence 9999984 999999999 999999999999999999999999999999997764
Q ss_pred -CeEEEEE
Q 029806 177 -TSFSDII 183 (187)
Q Consensus 177 -g~~i~~v 183 (187)
|.++.++
T Consensus 364 ~G~~i~l~ 371 (401)
T PTZ00424 364 KGVAINFV 371 (401)
T ss_pred CceEEEEE
Confidence 6666655
No 23
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.1e-24 Score=187.99 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=126.3
Q ss_pred CCCCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHH
Q 029806 14 QSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER 93 (187)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR 93 (187)
.....++++.||++.|++.+ |+.++.-+++.-. =.++.|||+|+.+++.+|.-.|...| |+...|+|+||...|
T Consensus 234 ~el~~~dqL~Qy~v~cse~D-KflllyallKL~L----I~gKsliFVNtIdr~YrLkLfLeqFG-iksciLNseLP~NSR 307 (569)
T KOG0346|consen 234 GELPNPDQLTQYQVKCSEED-KFLLLYALLKLRL----IRGKSLIFVNTIDRCYRLKLFLEQFG-IKSCILNSELPANSR 307 (569)
T ss_pred ccCCCcccceEEEEEeccch-hHHHHHHHHHHHH----hcCceEEEEechhhhHHHHHHHHHhC-cHhhhhcccccccch
Confidence 34457899999999999777 9999999998622 24899999999999999999999999 999999999999999
Q ss_pred HHHHHHHhcccccccccccc------------cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCC
Q 029806 94 TLILEEFRHTAMKWNQKVTE------------QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK 161 (187)
Q Consensus 94 ~~~l~~Fr~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~ 161 (187)
..++++|.+|.|+....-+. .-.++.+++.++.+.+ =.-.+.| .+|||||..|++|+|||+|.+
T Consensus 308 ~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskk-K~D~E~G---VsRGIDF~~V~~VlNFD~P~t 383 (569)
T KOG0346|consen 308 CHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKK-KLDKESG---VSRGIDFHHVSNVLNFDFPET 383 (569)
T ss_pred hhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCcccccc-ccCchhc---hhccccchheeeeeecCCCCc
Confidence 99999999998776544221 0111111112221111 1122233 799999999999999999999
Q ss_pred hhHHHHhhhhc--cCCCCeEEEEEE
Q 029806 162 KETYIRRMTTC--LAAGTSFSDIIL 184 (187)
Q Consensus 162 ~~~y~~R~GR~--~r~~g~~i~~v~ 184 (187)
+.+|+||+||+ |.+.|.+++||+
T Consensus 384 ~~sYIHRvGRTaRg~n~GtalSfv~ 408 (569)
T KOG0346|consen 384 VTSYIHRVGRTARGNNKGTALSFVS 408 (569)
T ss_pred hHHHHHhccccccCCCCCceEEEec
Confidence 99999999999 666799999985
No 24
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.8e-24 Score=183.78 Aligned_cols=130 Identities=25% Similarity=0.548 Sum_probs=122.8
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
.++++|+|+.+..++ |+..|+++.+. ..+.+||||+++.++++..+|...+ .++..+||+|.+.+|..+++
T Consensus 237 l~gikq~~i~v~k~~-k~~~l~dl~~~-------~~q~~if~nt~r~v~~l~~~L~~~~-~~~s~~~~d~~q~~R~~~~~ 307 (397)
T KOG0327|consen 237 LEGIKQFYINVEKEE-KLDTLCDLYRR-------VTQAVIFCNTRRKVDNLTDKLRAHG-FTVSAIHGDMEQNERDTLMR 307 (397)
T ss_pred hhheeeeeeeccccc-cccHHHHHHHh-------hhcceEEecchhhHHHHHHHHhhCC-ceEEEeecccchhhhhHHHH
Confidence 678999999999999 99999999985 3689999999999999999998888 69999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc--cCCC
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAG 176 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~--~r~~ 176 (187)
+|+.|+ .++||+|++ ++||+|+.+++.|||||+|...+.|+||+||+ .++.
T Consensus 308 ef~~gs-----------------------srvlIttdl----~argidv~~~slvinydlP~~~~~yihR~gr~gr~grk 360 (397)
T KOG0327|consen 308 EFRSGS-----------------------SRVLITTDL----LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK 360 (397)
T ss_pred HhhcCC-----------------------ceEEeeccc----cccccchhhcceeeeeccccchhhhhhhcccccccCCC
Confidence 999995 999999999 99999999999999999999999999999999 6667
Q ss_pred CeEEEEEE
Q 029806 177 TSFSDIIL 184 (187)
Q Consensus 177 g~~i~~v~ 184 (187)
|.+++++.
T Consensus 361 g~~in~v~ 368 (397)
T KOG0327|consen 361 GVAINFVT 368 (397)
T ss_pred ceeeeeeh
Confidence 99999875
No 25
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.6e-24 Score=186.00 Aligned_cols=135 Identities=20% Similarity=0.271 Sum_probs=119.2
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
.+-..+.|.++...+.+ |++++..+++. ..+..|+||||..+..++.|..-|.-.| |....|||+-++.+|...
T Consensus 434 ~a~~sVkQ~i~v~~d~~-k~~~~~~f~~~----ms~ndKvIiFv~~K~~AD~LSSd~~l~g-i~~q~lHG~r~Q~DrE~a 507 (629)
T KOG0336|consen 434 VAVKSVKQNIIVTTDSE-KLEIVQFFVAN----MSSNDKVIIFVSRKVMADHLSSDFCLKG-ISSQSLHGNREQSDREMA 507 (629)
T ss_pred eeeeeeeeeEEecccHH-HHHHHHHHHHh----cCCCceEEEEEechhhhhhccchhhhcc-cchhhccCChhhhhHHHH
Confidence 34456778875555555 99888888887 6778999999999999999999988878 899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC-
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA- 175 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~- 175 (187)
++.|+.|+ ++|||+||+ ++||||++++.||+|||+|.+.+.|+||+||+||.
T Consensus 508 l~~~ksG~-----------------------vrILvaTDl----aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaG 560 (629)
T KOG0336|consen 508 LEDFKSGE-----------------------VRILVATDL----ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAG 560 (629)
T ss_pred HHhhhcCc-----------------------eEEEEEech----hhcCCCchhcceeeccCCCccHHHHHHHhcccccCC
Confidence 99999995 999999999 99999999999999999999999999999999665
Q ss_pred -CCeEEEEEE
Q 029806 176 -GTSFSDIIL 184 (187)
Q Consensus 176 -~g~~i~~v~ 184 (187)
.|.+++|++
T Consensus 561 r~G~sis~lt 570 (629)
T KOG0336|consen 561 RTGTSISFLT 570 (629)
T ss_pred CCcceEEEEe
Confidence 477888765
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1e-23 Score=185.41 Aligned_cols=142 Identities=24% Similarity=0.307 Sum_probs=121.9
Q ss_pred CCCCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc---------------C-
Q 029806 14 QSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---------------A- 77 (187)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~---------------~- 77 (187)
...+.|+++.|.|..|+..- ++-.|..+|..... .....++|||+++.+.+++-+..|... |
T Consensus 388 ~~~~iPeqL~qry~vVPpKL-RLV~Laa~L~~~~k-~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~ 465 (708)
T KOG0348|consen 388 DSFAIPEQLLQRYTVVPPKL-RLVALAALLLNKVK-FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGL 465 (708)
T ss_pred ccccCcHHhhhceEecCCch-hHHHHHHHHHHHhh-hhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCC
Confidence 44789999999999999987 88888888876444 345579999999999999999888642 0
Q ss_pred -----CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCE
Q 029806 78 -----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARV 152 (187)
Q Consensus 78 -----~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~ 152 (187)
..+++.|||+|++++|..+++.|+... .-||+|||+ ++||||+|+|.+
T Consensus 466 ~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~-----------------------~~VLLcTDV----AaRGLDlP~V~~ 518 (708)
T KOG0348|consen 466 PPLFMDLKFYRLHGSMEQEERTSVFQEFSHSR-----------------------RAVLLCTDV----AARGLDLPHVGL 518 (708)
T ss_pred hhhhhcceEEEecCchhHHHHHHHHHhhcccc-----------------------ceEEEehhh----hhccCCCCCcCe
Confidence 157899999999999999999999973 669999999 999999999999
Q ss_pred EEEecCCCChhHHHHhhhhccCC--CCeEEEEEE
Q 029806 153 LINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 184 (187)
Q Consensus 153 VI~yd~P~~~~~y~~R~GR~~r~--~g~~i~~v~ 184 (187)
||.||.|.++.+|+||+||++|. .|.++.|++
T Consensus 519 vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~ 552 (708)
T KOG0348|consen 519 VVQYDPPFSTADYLHRVGRTARAGEKGEALLFLL 552 (708)
T ss_pred EEEeCCCCCHHHHHHHhhhhhhccCCCceEEEec
Confidence 99999999999999999999555 577777654
No 27
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=2.4e-23 Score=185.53 Aligned_cols=116 Identities=23% Similarity=0.372 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
.+..+.+++.. ..+++++||||++++.++.++..|.+.| +.+..+||+|+.++|..++++|+.|.
T Consensus 212 ~~~~l~~~l~~----~~~~~~~IIF~~s~~~~e~la~~L~~~g-~~~~~~H~~l~~~eR~~i~~~F~~g~---------- 276 (470)
T TIGR00614 212 ILEDLLRFIRK----EFKGKSGIIYCPSRKKSEQVTASLQNLG-IAAGAYHAGLEISARDDVHHKFQRDE---------- 276 (470)
T ss_pred HHHHHHHHHHH----hcCCCceEEEECcHHHHHHHHHHHHhcC-CCeeEeeCCCCHHHHHHHHHHHHcCC----------
Confidence 55566666654 2455677999999999999999999988 79999999999999999999999984
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCeEEEE
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDI 182 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~~i~~ 182 (187)
.+|||||++ +++|+|+|+|++||||++|.+.+.|+||+||+||.+..+.++
T Consensus 277 -------------~~vLVaT~~----~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~ 327 (470)
T TIGR00614 277 -------------IQVVVATVA----FGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECH 327 (470)
T ss_pred -------------CcEEEEech----hhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEE
Confidence 999999999 999999999999999999999999999999998876444443
No 28
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.90 E-value=1.3e-24 Score=185.45 Aligned_cols=129 Identities=21% Similarity=0.329 Sum_probs=113.2
Q ss_pred CCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHH
Q 029806 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 20 ~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
-++.|..-++..+. |+-.|++.|+. ...+++|||..+..++.+.++|--+| +.++.+||+-++++|...++.
T Consensus 395 ldViQevEyVkqEa-KiVylLeCLQK------T~PpVLIFaEkK~DVD~IhEYLLlKG-VEavaIHGGKDQedR~~ai~a 466 (610)
T KOG0341|consen 395 LDVIQEVEYVKQEA-KIVYLLECLQK------TSPPVLIFAEKKADVDDIHEYLLLKG-VEAVAIHGGKDQEDRHYAIEA 466 (610)
T ss_pred hhHHHHHHHHHhhh-hhhhHHHHhcc------CCCceEEEeccccChHHHHHHHHHcc-ceeEEeecCcchhHHHHHHHH
Confidence 34444444555555 88888888876 34799999999999999999999888 899999999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC--C
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--T 177 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~--g 177 (187)
||.| +.++||+||+ ++.|+|||++.||||||+|...+.|+|||||+||.+ |
T Consensus 467 fr~g-----------------------kKDVLVATDV----ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~G 519 (610)
T KOG0341|consen 467 FRAG-----------------------KKDVLVATDV----ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTG 519 (610)
T ss_pred HhcC-----------------------CCceEEEecc----hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcc
Confidence 9999 4999999999 999999999999999999999999999999998876 6
Q ss_pred eEEEEE
Q 029806 178 SFSDII 183 (187)
Q Consensus 178 ~~i~~v 183 (187)
.+.+|+
T Consensus 520 iATTfI 525 (610)
T KOG0341|consen 520 IATTFI 525 (610)
T ss_pred eeeeee
Confidence 666665
No 29
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=4.4e-23 Score=195.73 Aligned_cols=126 Identities=17% Similarity=0.268 Sum_probs=105.8
Q ss_pred EEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccc
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~ 104 (187)
+|..++.....+..+.++++. .....+.||||++++.++.++..|...| +.+..+||+|+.++|..++++|++|+
T Consensus 656 ~y~Vv~k~kk~le~L~~~I~~----~~~~esgIIYC~SRke~E~LAe~L~~~G-ika~~YHAGLs~eeR~~vqe~F~~Ge 730 (1195)
T PLN03137 656 WYSVVPKTKKCLEDIDKFIKE----NHFDECGIIYCLSRMDCEKVAERLQEFG-HKAAFYHGSMDPAQRAFVQKQWSKDE 730 (1195)
T ss_pred EEEEeccchhHHHHHHHHHHh----cccCCCceeEeCchhHHHHHHHHHHHCC-CCeeeeeCCCCHHHHHHHHHHHhcCC
Confidence 344444333234556666654 2345689999999999999999999998 69999999999999999999999984
Q ss_pred ccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCeEEEE
Q 029806 105 MKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDI 182 (187)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~~i~~ 182 (187)
.+|||||++ ++||||+|+|++|||||+|.+.+.|+||+||+||.+..+.++
T Consensus 731 -----------------------i~VLVATdA----FGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cI 781 (1195)
T PLN03137 731 -----------------------INIICATVA----FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 781 (1195)
T ss_pred -----------------------CcEEEEech----hhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEE
Confidence 999999999 999999999999999999999999999999998876444433
No 30
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.90 E-value=5.6e-23 Score=188.24 Aligned_cols=116 Identities=19% Similarity=0.365 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
++..|..++.. ..+.++||||++++.+++++..|...| +.+..+||+|+.++|..+++.|+.|.
T Consensus 223 ~~~~l~~~l~~-----~~~~~~IIFc~tr~~~e~la~~L~~~g-~~v~~~Ha~l~~~~R~~i~~~F~~g~---------- 286 (607)
T PRK11057 223 PLDQLMRYVQE-----QRGKSGIIYCNSRAKVEDTAARLQSRG-ISAAAYHAGLDNDVRADVQEAFQRDD---------- 286 (607)
T ss_pred hHHHHHHHHHh-----cCCCCEEEEECcHHHHHHHHHHHHhCC-CCEEEecCCCCHHHHHHHHHHHHCCC----------
Confidence 56666666655 456899999999999999999999988 79999999999999999999999984
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC--CeEEEEE
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDII 183 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~--g~~i~~v 183 (187)
.+|||||++ +++|||+|+|++|||||+|.+.++|+||+||+||.+ |.++.|+
T Consensus 287 -------------~~VLVaT~a----~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~ 340 (607)
T PRK11057 287 -------------LQIVVATVA----FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (607)
T ss_pred -------------CCEEEEech----hhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEe
Confidence 999999999 999999999999999999999999999999998875 4555443
No 31
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2e-23 Score=182.84 Aligned_cols=136 Identities=17% Similarity=0.260 Sum_probs=120.2
Q ss_pred CCCCCCCceEEEEccC--cchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHH
Q 029806 16 PSHFSQPRHFYVAVDR--LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER 93 (187)
Q Consensus 16 ~~~~~~i~~~~~~~~~--~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR 93 (187)
...+..|+|.|+.+.. +..+-..|..|+..++. .++|||+.|++.+..|.-.|.-.| +++.-|||.+++++|
T Consensus 392 ~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~-----~~~ivFv~tKk~AHRl~IllGLlg-l~agElHGsLtQ~QR 465 (691)
T KOG0338|consen 392 KDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQ-----DRTIVFVRTKKQAHRLRILLGLLG-LKAGELHGSLTQEQR 465 (691)
T ss_pred cccchhhhHHHheeccccccccHHHHHHHHHHhcc-----cceEEEEehHHHHHHHHHHHHHhh-chhhhhcccccHHHH
Confidence 3456778898988773 23377888888888443 899999999999999999998888 899999999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc-
Q 029806 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC- 172 (187)
Q Consensus 94 ~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~- 172 (187)
.+.++.|++.+ +++|||||+ ++||||++.|..||||++|.+.+.|+||+||+
T Consensus 466 lesL~kFk~~e-----------------------idvLiaTDv----AsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTA 518 (691)
T KOG0338|consen 466 LESLEKFKKEE-----------------------IDVLIATDV----ASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTA 518 (691)
T ss_pred HHHHHHHHhcc-----------------------CCEEEEech----hhccCCccceeEEEeccCchhHHHHHHHhhhhh
Confidence 99999999996 999999999 99999999999999999999999999999999
Q ss_pred -cCCCCeEEEEEE
Q 029806 173 -LAAGTSFSDIIL 184 (187)
Q Consensus 173 -~r~~g~~i~~v~ 184 (187)
.|+.|.+++|+.
T Consensus 519 RAGRaGrsVtlvg 531 (691)
T KOG0338|consen 519 RAGRAGRSVTLVG 531 (691)
T ss_pred hcccCcceEEEec
Confidence 555688888764
No 32
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.89 E-value=1.6e-24 Score=190.99 Aligned_cols=132 Identities=22% Similarity=0.296 Sum_probs=112.5
Q ss_pred CCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHH
Q 029806 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTL 95 (187)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~ 95 (187)
.+....|....+.|+..+ |--.|.-+|.. .++++|||||+++.+.+|+-+|...+ |....||+.|.++.|..
T Consensus 433 ~~ta~~l~Es~I~C~~~e-KD~ylyYfl~r------yPGrTlVF~NsId~vKRLt~~L~~L~-i~p~~LHA~M~QKqRLk 504 (731)
T KOG0347|consen 433 SATASTLTESLIECPPLE-KDLYLYYFLTR------YPGRTLVFCNSIDCVKRLTVLLNNLD-IPPLPLHASMIQKQRLK 504 (731)
T ss_pred hhHHHHHHHHhhcCCccc-cceeEEEEEee------cCCceEEEechHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHH
Confidence 344455666666776666 66666665544 34899999999999999999999998 99999999999999999
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC
Q 029806 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 175 (187)
Q Consensus 96 ~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~ 175 (187)
.|++|+... .-+|||||+ ++||||+|+|.|||||.+|.+.+-|+||.||++|.
T Consensus 505 nLEkF~~~~-----------------------~~VLiaTDV----AARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA 557 (731)
T KOG0347|consen 505 NLEKFKQSP-----------------------SGVLIATDV----AARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARA 557 (731)
T ss_pred hHHHHhcCC-----------------------CeEEEeehh----hhccCCCCCcceEEEeecCCccceeEecccccccc
Confidence 999999974 889999999 99999999999999999999999999999999777
Q ss_pred CCeEEEE
Q 029806 176 GTSFSDI 182 (187)
Q Consensus 176 ~g~~i~~ 182 (187)
+..|+++
T Consensus 558 ~~~Gvsv 564 (731)
T KOG0347|consen 558 NSEGVSV 564 (731)
T ss_pred cCCCeEE
Confidence 6444443
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.88 E-value=3e-22 Score=186.91 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc--------CCceEEEEeccCCHHHHHHHHHHHhccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSDLAETERTLILEEFRHTAMK 106 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~--------~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~ 106 (187)
+...|.++++. ..++||||+|++.++.++.+|... + ..+..+||++++++|..++++|++|+
T Consensus 260 ~~~~l~~l~~~-------~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~-~~v~~~hgg~~~~eR~~ie~~f~~G~-- 329 (742)
T TIGR03817 260 AADLLADLVAE-------GARTLTFVRSRRGAELVAAIARRLLGEVDPDLA-ERVAAYRAGYLPEDRRELERALRDGE-- 329 (742)
T ss_pred HHHHHHHHHHC-------CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccc-cchhheecCCCHHHHHHHHHHHHcCC--
Confidence 55556666544 479999999999999999988753 3 47889999999999999999999994
Q ss_pred ccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCeEEEE
Q 029806 107 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDI 182 (187)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~~i~~ 182 (187)
.++||||++ ++||||++++++|||||+|.+.++|+||+||+||.+..+..+
T Consensus 330 ---------------------i~vLVaTd~----lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai 380 (742)
T TIGR03817 330 ---------------------LLGVATTNA----LELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVV 380 (742)
T ss_pred ---------------------ceEEEECch----HhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEE
Confidence 999999999 999999999999999999999999999999998876444433
No 34
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.88 E-value=7.9e-22 Score=180.10 Aligned_cols=123 Identities=23% Similarity=0.359 Sum_probs=107.3
Q ss_pred EEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
|......+ +...+.+++.. ..+.++||||++++.++.+++.|...| +.+..+||+|+.++|..+++.|+.|.
T Consensus 203 ~~v~~~~~-~~~~l~~~l~~-----~~~~~~IIf~~sr~~~e~la~~L~~~g-~~~~~~H~~l~~~~R~~i~~~F~~g~- 274 (591)
T TIGR01389 203 FSVVKKNN-KQKFLLDYLKK-----HRGQSGIIYASSRKKVEELAERLESQG-ISALAYHAGLSNKVRAENQEDFLYDD- 274 (591)
T ss_pred EEEEeCCC-HHHHHHHHHHh-----cCCCCEEEEECcHHHHHHHHHHHHhCC-CCEEEEECCCCHHHHHHHHHHHHcCC-
Confidence 33334444 77788888876 346799999999999999999999888 79999999999999999999999984
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCeEEEE
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDI 182 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~~i~~ 182 (187)
.++||||++ +++|+|+|+|++|||||+|.+.++|+||+||+||.+..+.++
T Consensus 275 ----------------------~~vlVaT~a----~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 275 ----------------------VKVMVATNA----FGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred ----------------------CcEEEEech----hhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 999999999 999999999999999999999999999999998876444433
No 35
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=2.8e-22 Score=177.66 Aligned_cols=136 Identities=18% Similarity=0.262 Sum_probs=122.9
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
++...|.|..+.|-.+..|+-.++++++. .-..+++||+.+.+++..|.+.|.....|.+.++||+.++.+|.+.
T Consensus 356 sa~~~V~QelvF~gse~~K~lA~rq~v~~-----g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~ 430 (593)
T KOG0344|consen 356 SANETVDQELVFCGSEKGKLLALRQLVAS-----GFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDET 430 (593)
T ss_pred hHhhhhhhhheeeecchhHHHHHHHHHhc-----cCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHH
Confidence 44677889999999888899999999998 3458999999999999999999954434899999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC-
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA- 175 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~- 175 (187)
+++||.|+ +.+|+||++ ++||+||.+|++|||||+|.+..+|+||+||+||.
T Consensus 431 ~~~FR~g~-----------------------IwvLicTdl----l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag 483 (593)
T KOG0344|consen 431 MERFRIGK-----------------------IWVLICTDL----LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAG 483 (593)
T ss_pred HHHHhccC-----------------------eeEEEehhh----hhccccccCcceEEecCCCchhHHHHHHhhccCCCC
Confidence 99999995 999999999 99999999999999999999999999999999555
Q ss_pred -CCeEEEEEE
Q 029806 176 -GTSFSDIIL 184 (187)
Q Consensus 176 -~g~~i~~v~ 184 (187)
+|.+++|.+
T Consensus 484 ~~g~Aitfyt 493 (593)
T KOG0344|consen 484 RSGKAITFYT 493 (593)
T ss_pred CCcceEEEec
Confidence 688888864
No 36
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.86 E-value=4.4e-21 Score=181.86 Aligned_cols=113 Identities=17% Similarity=0.246 Sum_probs=101.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHH-ccCCceEEEEeccCCHHHHHHHHHHHhcccccccccc
Q 029806 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS-NLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~-~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~ 111 (187)
+.|++.|.++++. ....|+||||+++.+++.+.+.|+ ..| +.+..+||+|+..+|.++++.|+.++
T Consensus 478 d~Ki~~L~~~L~~-----~~~~KvLVF~~~~~t~~~L~~~L~~~~G-i~~~~ihG~~s~~eR~~~~~~F~~~~------- 544 (956)
T PRK04914 478 DPRVEWLIDFLKS-----HRSEKVLVICAKAATALQLEQALREREG-IRAAVFHEGMSIIERDRAAAYFADEE------- 544 (956)
T ss_pred CHHHHHHHHHHHh-----cCCCeEEEEeCcHHHHHHHHHHHhhccC-eeEEEEECCCCHHHHHHHHHHHhcCC-------
Confidence 4589999999987 346899999999999999999995 456 79999999999999999999999852
Q ss_pred cccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 112 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
+..+|||||++ +++|+|++.+++|||||+|++++.|.||+||++|.+
T Consensus 545 --------------~~~~VLIsTdv----gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiG 591 (956)
T PRK04914 545 --------------DGAQVLLCSEI----GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIG 591 (956)
T ss_pred --------------CCccEEEechh----hccCCCcccccEEEEecCCCCHHHHHHHhcccccCC
Confidence 24899999999 999999999999999999999999999999995554
No 37
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=3e-21 Score=169.22 Aligned_cols=136 Identities=16% Similarity=0.227 Sum_probs=123.6
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
.+-..|.|.+..|+++..|+.+|.+-|-. ..+.+++|||+..+..++++...|..++ +++..+||+|.+.+|.++
T Consensus 436 ean~dITQ~V~V~~s~~~Kl~wl~~~L~~----f~S~gkvlifVTKk~~~e~i~a~Lklk~-~~v~llhgdkdqa~rn~~ 510 (731)
T KOG0339|consen 436 EANEDITQTVSVCPSEEKKLNWLLRHLVE----FSSEGKVLIFVTKKADAEEIAANLKLKG-FNVSLLHGDKDQAERNEV 510 (731)
T ss_pred ccccchhheeeeccCcHHHHHHHHHHhhh----hccCCcEEEEEeccCCHHHHHHHhcccc-ceeeeecCchhhHHHHHH
Confidence 34567899999999988899998887766 3457899999999999999999999888 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
+.+|+++. ..||++||+ ++||+|++++..|||||+..+.+.|.|||||+||.+
T Consensus 511 ls~fKkk~-----------------------~~VlvatDv----aargldI~~ikTVvnyD~ardIdththrigrtgRag 563 (731)
T KOG0339|consen 511 LSKFKKKR-----------------------KPVLVATDV----AARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAG 563 (731)
T ss_pred HHHHhhcC-----------------------CceEEEeeH----hhcCCCccccceeecccccchhHHHHHHhhhccccc
Confidence 99999984 999999999 999999999999999999999999999999997764
Q ss_pred --CeEEEEEE
Q 029806 177 --TSFSDIIL 184 (187)
Q Consensus 177 --g~~i~~v~ 184 (187)
|+++++|+
T Consensus 564 ~kGvayTlvT 573 (731)
T KOG0339|consen 564 EKGVAYTLVT 573 (731)
T ss_pred ccceeeEEec
Confidence 88888875
No 38
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.7e-21 Score=170.29 Aligned_cols=139 Identities=18% Similarity=0.217 Sum_probs=121.0
Q ss_pred CCCCCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHH-ccC--CceEEEEeccCC
Q 029806 13 CQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS-NLA--DISFSSLHSDLA 89 (187)
Q Consensus 13 ~~~~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~-~~~--~i~~~~lhg~~~ 89 (187)
..-.+.|..+.|+++.++..- |--.+..+++. ....++|+|+++.+++.++++.|. ..+ ..++..+.|.++
T Consensus 395 ~~ryslp~~l~~~~vv~~~~~-kpl~~~~lI~~-----~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 395 IGRYSLPSSLSHRLVVTEPKF-KPLAVYALITS-----NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred ceeeecChhhhhceeeccccc-chHhHHHHHHH-----hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 344567788999999998876 88888888887 567999999999999999999987 221 257778999999
Q ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhh
Q 029806 90 ETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRM 169 (187)
Q Consensus 90 ~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~ 169 (187)
.+.|...+++|.+|+ +++|||+|+ ++||+|+.+|+.|||||+|.+..+|+||+
T Consensus 469 ~k~r~k~l~~f~~g~-----------------------i~vLIcSD~----laRGiDv~~v~~VINYd~P~~~ktyVHR~ 521 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKGD-----------------------INVLICSDA----LARGIDVNDVDNVINYDPPASDKTYVHRA 521 (620)
T ss_pred HHHHHHHHHHHhcCC-----------------------ceEEEehhh----hhcCCcccccceEeecCCCchhhHHHHhh
Confidence 999999999999995 999999999 99999999999999999999999999999
Q ss_pred hhccCC--CCeEEEEEE
Q 029806 170 TTCLAA--GTSFSDIIL 184 (187)
Q Consensus 170 GR~~r~--~g~~i~~v~ 184 (187)
||++|. .|.+++++.
T Consensus 522 GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 522 GRTARAGQDGYAITLLD 538 (620)
T ss_pred cccccccCCceEEEeec
Confidence 999555 577777654
No 39
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.86 E-value=1.6e-21 Score=174.69 Aligned_cols=133 Identities=16% Similarity=0.335 Sum_probs=117.9
Q ss_pred CCCCceEEEEccCc-------chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHH
Q 029806 19 FSQPRHFYVAVDRL-------QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAET 91 (187)
Q Consensus 19 ~~~i~~~~~~~~~~-------~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~ 91 (187)
.-+|+|||+.+... +.|++.|..+++.|. ..++||||+....++-++.+|...| +.+.++.|.|++.
T Consensus 236 L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ip-----y~QAlVF~~~~sra~~~a~~L~ssG-~d~~~ISgaM~Q~ 309 (980)
T KOG4284|consen 236 LFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIP-----YVQALVFCDQISRAEPIATHLKSSG-LDVTFISGAMSQK 309 (980)
T ss_pred eechhheeeeccCCcchHHHHHHHHHHHHHHHhhCc-----hHHHHhhhhhhhhhhHHHHHhhccC-CCeEEeccccchh
Confidence 35688998876644 347888888888854 4899999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhh
Q 029806 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 171 (187)
Q Consensus 92 eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR 171 (187)
+|..+++.+|+- ..+|||+||+ .+||||-++|++|||.|.|-+-++|.|||||
T Consensus 310 ~Rl~a~~~lr~f-----------------------~~rILVsTDL----taRGIDa~~vNLVVNiD~p~d~eTY~HRIGR 362 (980)
T KOG4284|consen 310 DRLLAVDQLRAF-----------------------RVRILVSTDL----TARGIDADNVNLVVNIDAPADEETYFHRIGR 362 (980)
T ss_pred HHHHHHHHhhhc-----------------------eEEEEEecch----hhccCCccccceEEecCCCcchHHHHHHhhh
Confidence 999999999997 5999999999 9999999999999999999999999999999
Q ss_pred ccCCC--CeEEEEEE
Q 029806 172 CLAAG--TSFSDIIL 184 (187)
Q Consensus 172 ~~r~~--g~~i~~v~ 184 (187)
+||-+ |.+++|++
T Consensus 363 AgRFG~~G~aVT~~~ 377 (980)
T KOG4284|consen 363 AGRFGAHGAAVTLLE 377 (980)
T ss_pred cccccccceeEEEec
Confidence 96665 66676664
No 40
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.3e-20 Score=172.38 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=107.3
Q ss_pred CceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHh
Q 029806 22 PRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFR 101 (187)
Q Consensus 22 i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr 101 (187)
..+.++.+...+ |...|.++++... ..+.++||||+|+..++.+++.|.+.| +++..|||+++..+ ..+..|+
T Consensus 446 ~~~~~v~~t~~~-K~~aL~~~i~~~~---~~~~pvLIft~t~~~se~L~~~L~~~g-i~~~~Lhg~~~~rE--~~ii~~a 518 (656)
T PRK12898 446 HLPDEVFLTAAA-KWAAVAARVRELH---AQGRPVLVGTRSVAASERLSALLREAG-LPHQVLNAKQDAEE--AAIVARA 518 (656)
T ss_pred ecCCEEEeCHHH-HHHHHHHHHHHHH---hcCCCEEEEeCcHHHHHHHHHHHHHCC-CCEEEeeCCcHHHH--HHHHHHc
Confidence 556677777666 9999999998732 234689999999999999999999998 79999999976544 4455565
Q ss_pred cccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCC---CCC-----EEEEecCCCChhHHHHhhhhcc
Q 029806 102 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETYIRRMTTCL 173 (187)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~---~v~-----~VI~yd~P~~~~~y~~R~GR~~ 173 (187)
.+ +..|+||||+ ++||+|++ +|. ||||||+|.+.+.|.||+||+|
T Consensus 519 g~-----------------------~g~VlVATdm----AgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTG 571 (656)
T PRK12898 519 GQ-----------------------RGRITVATNM----AGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCG 571 (656)
T ss_pred CC-----------------------CCcEEEEccc----hhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhccccc
Confidence 54 3679999999 99999999 776 9999999999999999999997
Q ss_pred CCC--CeEEEEEEe
Q 029806 174 AAG--TSFSDIILL 185 (187)
Q Consensus 174 r~~--g~~i~~v~~ 185 (187)
|.+ |.++.|+++
T Consensus 572 RqG~~G~s~~~is~ 585 (656)
T PRK12898 572 RQGDPGSYEAILSL 585 (656)
T ss_pred CCCCCeEEEEEech
Confidence 765 777777653
No 41
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.2e-20 Score=170.04 Aligned_cols=106 Identities=23% Similarity=0.391 Sum_probs=99.3
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeE
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 130 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 130 (187)
...+..||||.|++.++.++++|...| +++..+|++|+.++|..+.++|..++ .+|
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g-~~a~~YHaGl~~~eR~~~q~~f~~~~-----------------------~~i 283 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNG-ISAGAYHAGLSNEERERVQQAFLNDE-----------------------IKV 283 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCC-CceEEecCCCCHHHHHHHHHHHhcCC-----------------------CcE
Confidence 455779999999999999999999998 79999999999999999999999985 999
Q ss_pred EEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCeEEEEEE
Q 029806 131 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDIIL 184 (187)
Q Consensus 131 Lv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~~i~~v~ 184 (187)
+|||.+ +++|||-|||+.|||||+|.+.++|.|.+||+||.+-.+.++++
T Consensus 284 iVAT~A----FGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 284 MVATNA----FGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred EEEecc----ccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe
Confidence 999999 99999999999999999999999999999999998877777665
No 42
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.84 E-value=3.9e-20 Score=162.22 Aligned_cols=129 Identities=17% Similarity=0.207 Sum_probs=111.3
Q ss_pred EEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEE-EEe--------ccCCHHHHHHHH
Q 029806 27 VAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLH--------SDLAETERTLIL 97 (187)
Q Consensus 27 ~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~-~lh--------g~~~~~eR~~~l 97 (187)
..+..++.|++.+.+++++.+. .+++.++|||++.+++++.+.+.|.+.+ +.+. .+- .||+++++.+++
T Consensus 341 ~~~~v~HPKl~~l~eilke~~~-k~~~~RvIVFT~yRdTae~i~~~L~~~~-~~~~~rFiGQa~r~~~~GMsQkeQ~eiI 418 (542)
T COG1111 341 DESGVEHPKLEKLREILKEQLE-KNGDSRVIVFTEYRDTAEEIVNFLKKIG-IKARVRFIGQASREGDKGMSQKEQKEII 418 (542)
T ss_pred ccccCCCccHHHHHHHHHHHHh-cCCCceEEEEehhHhHHHHHHHHHHhcC-CcceeEEeeccccccccccCHHHHHHHH
Confidence 3444455699999999999554 6777999999999999999999999987 4553 222 469999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC-C
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-G 176 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~-~ 176 (187)
++|++|+ .++||||++ +++|||+|++++||.||+-+|+..++||.||+||. +
T Consensus 419 ~~Fr~Ge-----------------------~nVLVaTSV----gEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~ 471 (542)
T COG1111 419 DQFRKGE-----------------------YNVLVATSV----GEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRK 471 (542)
T ss_pred HHHhcCC-----------------------ceEEEEccc----ccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCC
Confidence 9999996 999999999 99999999999999999999999999999999887 4
Q ss_pred CeEEEEEE
Q 029806 177 TSFSDIIL 184 (187)
Q Consensus 177 g~~i~~v~ 184 (187)
|.++.+++
T Consensus 472 Grv~vLvt 479 (542)
T COG1111 472 GRVVVLVT 479 (542)
T ss_pred CeEEEEEe
Confidence 77766554
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.83 E-value=5.9e-20 Score=174.24 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=90.1
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccC-----CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLA-----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~-----~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (187)
.+++||||||++.++.++..|.+.. ...+..+||+|+.++|..++++|++|.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~----------------------- 340 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE----------------------- 340 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCC-----------------------
Confidence 4789999999999999999997631 147999999999999999999999995
Q ss_pred eeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCC
Q 029806 128 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGT 177 (187)
Q Consensus 128 ~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g 177 (187)
.++||||+. +++|||+|++++||+|+.|.+..+|+||+||+||+.|
T Consensus 341 i~vLVaTs~----Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g 386 (876)
T PRK13767 341 LKVVVSSTS----LELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLG 386 (876)
T ss_pred CeEEEECCh----HHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCC
Confidence 999999999 9999999999999999999999999999999988743
No 44
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.83 E-value=2.9e-19 Score=130.99 Aligned_cols=126 Identities=28% Similarity=0.493 Sum_probs=109.5
Q ss_pred CceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHh
Q 029806 22 PRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFR 101 (187)
Q Consensus 22 i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr 101 (187)
|.++|...++ .|...+.+++.... .++.++||||++...++.+++.|.+.+ +.+..+||+++..+|..++++|+
T Consensus 2 i~~~~~~~~~--~k~~~i~~~i~~~~---~~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~f~ 75 (131)
T cd00079 2 IKQYVLPVED--EKLEALLELLKEHL---KKGGKVLIFCPSKKMLDELAELLRKPG-IKVAALHGDGSQEEREEVLKDFR 75 (131)
T ss_pred cEEEEEECCH--HHHHHHHHHHHhcc---cCCCcEEEEeCcHHHHHHHHHHHHhcC-CcEEEEECCCCHHHHHHHHHHHH
Confidence 4555555432 49999999998722 256899999999999999999998876 69999999999999999999999
Q ss_pred cccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCeEE
Q 029806 102 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFS 180 (187)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~~i 180 (187)
.+. ..+|++|.. +++|+|+|.+++||.++.|++...|.|++||++|.+..+.
T Consensus 76 ~~~-----------------------~~ili~t~~----~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~ 127 (131)
T cd00079 76 EGE-----------------------IVVLVATDV----IARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGT 127 (131)
T ss_pred cCC-----------------------CcEEEEcCh----hhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCce
Confidence 984 899999999 9999999999999999999999999999999977764443
No 45
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.82 E-value=5e-20 Score=171.79 Aligned_cols=134 Identities=18% Similarity=0.288 Sum_probs=121.5
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
-..+.+.+..|..++.|+..|.+||.+.. ...++||||.+...++.+...|.+.| +.+..|||+.++.+|..+++
T Consensus 583 ~k~V~q~v~V~~~e~eKf~kL~eLl~e~~----e~~~tiiFv~~qe~~d~l~~~L~~ag-~~~~slHGgv~q~dR~sti~ 657 (997)
T KOG0334|consen 583 CKEVTQVVRVCAIENEKFLKLLELLGERY----EDGKTIIFVDKQEKADALLRDLQKAG-YNCDSLHGGVDQHDRSSTIE 657 (997)
T ss_pred eccceEEEEEecCchHHHHHHHHHHHHHh----hcCCEEEEEcCchHHHHHHHHHHhcC-cchhhhcCCCchHHHHhHHH
Confidence 36788889999966669999999999833 37899999999999999999999888 58889999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc--cCCC
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAG 176 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~--~r~~ 176 (187)
.||++ ...+||+|++ ++||||+.+..+|||||+|...+.|+||+||+ .|+.
T Consensus 658 dfK~~-----------------------~~~LLvaTsv----varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrk 710 (997)
T KOG0334|consen 658 DFKNG-----------------------VVNLLVATSV----VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRK 710 (997)
T ss_pred HHhcc-----------------------CceEEEehhh----hhcccccccceEEEEcccchhHHHHHHHhcccccCCcc
Confidence 99999 4999999999 99999999999999999999999999999999 4556
Q ss_pred CeEEEEEE
Q 029806 177 TSFSDIIL 184 (187)
Q Consensus 177 g~~i~~v~ 184 (187)
|.+++|++
T Consensus 711 g~AvtFi~ 718 (997)
T KOG0334|consen 711 GAAVTFIT 718 (997)
T ss_pred ceeEEEeC
Confidence 78888875
No 46
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.4e-19 Score=168.45 Aligned_cols=124 Identities=17% Similarity=0.171 Sum_probs=106.4
Q ss_pred EccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccc
Q 029806 28 AVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKW 107 (187)
Q Consensus 28 ~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~ 107 (187)
.+...+ |...|.+.+.... ..+.++||||+|+..+++++..|.+.| +++..|||++.+++|..+.+.++.
T Consensus 407 ~~~~~~-K~~al~~~i~~~~---~~~~pvLIf~~t~~~se~l~~~L~~~g-i~~~~L~~~~~~~e~~~i~~ag~~----- 476 (790)
T PRK09200 407 FVTLDE-KYKAVIEEVKERH---ETGRPVLIGTGSIEQSETFSKLLDEAG-IPHNLLNAKNAAKEAQIIAEAGQK----- 476 (790)
T ss_pred EcCHHH-HHHHHHHHHHHHH---hcCCCEEEEeCcHHHHHHHHHHHHHCC-CCEEEecCCccHHHHHHHHHcCCC-----
Confidence 344445 9999999887621 346899999999999999999999998 799999999999888877777655
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCC---CCCC-----EEEEecCCCChhHHHHhhhhccCCC--C
Q 029806 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESA---ISAR-----VLINYELPTKKETYIRRMTTCLAAG--T 177 (187)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi---~~v~-----~VI~yd~P~~~~~y~~R~GR~~r~~--g 177 (187)
..|+||||+ ++||+|+ ++|. ||||||+|.+.+.|.||+||+||.+ |
T Consensus 477 --------------------g~VlIATdm----AgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G 532 (790)
T PRK09200 477 --------------------GAVTVATNM----AGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPG 532 (790)
T ss_pred --------------------CeEEEEccc----hhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCe
Confidence 469999999 9999999 7999 9999999999999999999997775 7
Q ss_pred eEEEEEEe
Q 029806 178 SFSDIILL 185 (187)
Q Consensus 178 ~~i~~v~~ 185 (187)
.++.|+++
T Consensus 533 ~s~~~is~ 540 (790)
T PRK09200 533 SSQFFISL 540 (790)
T ss_pred eEEEEEcc
Confidence 77777653
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.82 E-value=1.2e-19 Score=172.13 Aligned_cols=105 Identities=12% Similarity=0.162 Sum_probs=94.8
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 131 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 131 (187)
+++++|||++++.++++++.|.+. +++++..+||+|++++|..++++|++|+ .+||
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk-----------------------~~IL 716 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGE-----------------------FQVL 716 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCC-----------------------CCEE
Confidence 589999999999999999999875 2369999999999999999999999994 9999
Q ss_pred EEecCCCCcCcCCCCCCCCCEEEEecCCC-ChhHHHHhhhhccCCCCeEEEEEE
Q 029806 132 VVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAGTSFSDIIL 184 (187)
Q Consensus 132 v~Td~~~~~~~rGlDi~~v~~VI~yd~P~-~~~~y~~R~GR~~r~~g~~i~~v~ 184 (187)
|||++ +++|+|+|++++||+++.|. +...|.||+||+||.+..+++++.
T Consensus 717 VaT~i----ie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill 766 (926)
T TIGR00580 717 VCTTI----IETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLL 766 (926)
T ss_pred EECCh----hhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEE
Confidence 99999 99999999999999999976 577999999999888766666654
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.81 E-value=7.3e-20 Score=176.79 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=101.7
Q ss_pred CCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHHH
Q 029806 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 20 ~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
..+.+++........|...+.++.+ +++++||||++..++++++.|.+. +++.+..+||+|++++|.++++
T Consensus 784 ~~v~~~~~~~~~~~~k~~il~el~r--------~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~ 855 (1147)
T PRK10689 784 LAVKTFVREYDSLVVREAILREILR--------GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 855 (1147)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhc--------CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 4566665554332223333333322 479999999999999999999876 2268999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCC-CChhHHHHhhhhccCCCC
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLAAGT 177 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P-~~~~~y~~R~GR~~r~~g 177 (187)
+|++|+ .+|||||++ ++||+|+|+|++||..+.. -+...|+||+||+||.+.
T Consensus 856 ~Fr~Gk-----------------------~~VLVaTdI----ierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~ 908 (1147)
T PRK10689 856 DFHHQR-----------------------FNVLVCTTI----IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908 (1147)
T ss_pred HHHhcC-----------------------CCEEEECch----hhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCC
Confidence 999994 999999999 9999999999999943322 134569999999999988
Q ss_pred eEEEEEE
Q 029806 178 SFSDIIL 184 (187)
Q Consensus 178 ~~i~~v~ 184 (187)
.+++|+.
T Consensus 909 ~g~a~ll 915 (1147)
T PRK10689 909 QAYAWLL 915 (1147)
T ss_pred ceEEEEE
Confidence 8877765
No 49
>PRK13766 Hef nuclease; Provisional
Probab=99.81 E-value=4.4e-19 Score=166.32 Aligned_cols=124 Identities=20% Similarity=0.247 Sum_probs=109.5
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEecc--------CCHHHHHHHHHHHhc
Q 029806 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD--------LAETERTLILEEFRH 102 (187)
Q Consensus 31 ~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~--------~~~~eR~~~l~~Fr~ 102 (187)
....|++.|.++++++.. ..+..++||||+++++++.|.+.|...| +.+..+||. |++.+|.+++++|+.
T Consensus 344 ~~~pK~~~L~~il~~~~~-~~~~~kvlIF~~~~~t~~~L~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~ 421 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLG-KNPDSRIIVFTQYRDTAEKIVDLLEKEG-IKAVRFVGQASKDGDKGMSQKEQIEILDKFRA 421 (773)
T ss_pred cCChHHHHHHHHHHHHHh-cCCCCeEEEEeCcHHHHHHHHHHHHhCC-CceEEEEccccccccCCCCHHHHHHHHHHHHc
Confidence 334599999999988554 4567899999999999999999998877 689999986 999999999999999
Q ss_pred ccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC-CeEEE
Q 029806 103 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-TSFSD 181 (187)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~-g~~i~ 181 (187)
++ .++||+|++ +++|+|+|++++||+||+|++...|+||+||+||.+ |.++.
T Consensus 422 g~-----------------------~~vLvaT~~----~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~ 474 (773)
T PRK13766 422 GE-----------------------FNVLVSTSV----AEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVV 474 (773)
T ss_pred CC-----------------------CCEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEE
Confidence 84 999999999 999999999999999999999999999999998853 55555
Q ss_pred EE
Q 029806 182 II 183 (187)
Q Consensus 182 ~v 183 (187)
++
T Consensus 475 l~ 476 (773)
T PRK13766 475 LI 476 (773)
T ss_pred EE
Confidence 44
No 50
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.81 E-value=4.7e-19 Score=163.29 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=108.5
Q ss_pred ccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccc
Q 029806 29 VDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWN 108 (187)
Q Consensus 29 ~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~ 108 (187)
+.....+++.|.+.++... ..+.++||||++++.++.+++.|...| +.+..+||+++..+|..++++|+.|+
T Consensus 421 v~~~~~qi~~Ll~eI~~~~---~~g~~vLIf~~tk~~ae~L~~~L~~~g-i~~~~lh~~~~~~eR~~~l~~fr~G~---- 492 (655)
T TIGR00631 421 VRPTDGQVDDLLSEIRQRV---ARNERVLVTTLTKKMAEDLTDYLKELG-IKVRYLHSEIDTLERVEIIRDLRLGE---- 492 (655)
T ss_pred EeeccchHHHHHHHHHHHH---cCCCEEEEEECCHHHHHHHHHHHhhhc-cceeeeeCCCCHHHHHHHHHHHhcCC----
Confidence 3333446777776666522 456899999999999999999999988 79999999999999999999999984
Q ss_pred ccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEec-----CCCChhHHHHhhhhccCC-CCeEEEE
Q 029806 109 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-----LPTKKETYIRRMTTCLAA-GTSFSDI 182 (187)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd-----~P~~~~~y~~R~GR~~r~-~g~~i~~ 182 (187)
..+||||++ +++|+|+|++++||++| .|.+..+|+||+||+||. .|.++.|
T Consensus 493 -------------------i~VLV~t~~----L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~ 549 (655)
T TIGR00631 493 -------------------FDVLVGINL----LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMY 549 (655)
T ss_pred -------------------ceEEEEcCh----hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEE
Confidence 999999999 99999999999999999 899999999999999887 4777776
Q ss_pred EE
Q 029806 183 IL 184 (187)
Q Consensus 183 v~ 184 (187)
+.
T Consensus 550 ~~ 551 (655)
T TIGR00631 550 AD 551 (655)
T ss_pred Ec
Confidence 54
No 51
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.80 E-value=4.5e-19 Score=166.64 Aligned_cols=135 Identities=11% Similarity=0.123 Sum_probs=107.2
Q ss_pred CCCceEEEEccCcchHH-HHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc--CCceEEEEeccCCHHHHHHH
Q 029806 20 SQPRHFYVAVDRLQFKM-ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 20 ~~i~~~~~~~~~~~~Kl-~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~--~~i~~~~lhg~~~~~eR~~~ 96 (187)
..+.++|..+...+ ++ ..+...+..+.. ...+++|||+++..+++.+++.|.+. ..+.+..|||+|+.++|..+
T Consensus 178 ~pVe~~y~~~~~~~-~~~~~v~~~l~~~l~--~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~ 254 (819)
T TIGR01970 178 FPVEIRYLPLRGDQ-RLEDAVSRAVEHALA--SETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRA 254 (819)
T ss_pred eeeeeEEeecchhh-hHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHH
Confidence 34788888776554 43 222233333222 23578999999999999999999863 23799999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCC---------------
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK--------------- 161 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~--------------- 161 (187)
++.|+.|. .+||||||+ +++|||+|+|++|||+++|..
T Consensus 255 ~~~~~~G~-----------------------rkVlVATnI----AErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 307 (819)
T TIGR01970 255 IKPDPQGR-----------------------RKVVLATNI----AETSLTIEGIRVVIDSGLARVARFDPKTGITRLETV 307 (819)
T ss_pred HhhcccCC-----------------------eEEEEecch----HhhcccccCceEEEEcCcccccccccccCCceeeEE
Confidence 99999984 999999999 999999999999999999863
Q ss_pred ---hhHHHHhhhhccCC-CCeEEEEEE
Q 029806 162 ---KETYIRRMTTCLAA-GTSFSDIIL 184 (187)
Q Consensus 162 ---~~~y~~R~GR~~r~-~g~~i~~v~ 184 (187)
..+|.||+||+||. .|.|+.+.+
T Consensus 308 ~iSkasa~QR~GRAGR~~~G~cyrL~t 334 (819)
T TIGR01970 308 RISQASATQRAGRAGRLEPGVCYRLWS 334 (819)
T ss_pred EECHHHHHhhhhhcCCCCCCEEEEeCC
Confidence 35699999999885 577777653
No 52
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.80 E-value=1.1e-18 Score=161.19 Aligned_cols=126 Identities=15% Similarity=0.180 Sum_probs=108.6
Q ss_pred EccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccc
Q 029806 28 AVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKW 107 (187)
Q Consensus 28 ~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~ 107 (187)
.+.....++..|.+.++... ..+.++||||+++..++++++.|...| +++..+||+++..+|..+++.|+.|.
T Consensus 424 ~~~~~~~q~~~L~~~L~~~~---~~g~~viIf~~t~~~ae~L~~~L~~~g-i~~~~~h~~~~~~~R~~~l~~f~~g~--- 496 (652)
T PRK05298 424 EVRPTKGQVDDLLSEIRKRV---AKGERVLVTTLTKRMAEDLTDYLKELG-IKVRYLHSDIDTLERVEIIRDLRLGE--- 496 (652)
T ss_pred EEeeccccHHHHHHHHHHHH---hCCCEEEEEeCCHHHHHHHHHHHhhcc-eeEEEEECCCCHHHHHHHHHHHHcCC---
Confidence 33333446777777666522 346899999999999999999999988 79999999999999999999999984
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecC-----CCChhHHHHhhhhccCC-CCeEEE
Q 029806 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLAA-GTSFSD 181 (187)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~-----P~~~~~y~~R~GR~~r~-~g~~i~ 181 (187)
..+||||++ +++|+|+|++++||++|. |.+.++|+||+||+||. .|.+++
T Consensus 497 --------------------i~vlV~t~~----L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~ 552 (652)
T PRK05298 497 --------------------FDVLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIL 552 (652)
T ss_pred --------------------ceEEEEeCH----HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEE
Confidence 999999999 999999999999999984 88999999999999776 478887
Q ss_pred EEE
Q 029806 182 IIL 184 (187)
Q Consensus 182 ~v~ 184 (187)
|+.
T Consensus 553 ~~~ 555 (652)
T PRK05298 553 YAD 555 (652)
T ss_pred Eec
Confidence 775
No 53
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.78 E-value=4.2e-19 Score=120.69 Aligned_cols=78 Identities=27% Similarity=0.434 Sum_probs=72.9
Q ss_pred HHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCC
Q 029806 71 SAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA 150 (187)
Q Consensus 71 ~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v 150 (187)
+.|...+ +.+..+||+++.++|..+++.|+.+. ..+||||++ +++|+|+|++
T Consensus 1 ~~L~~~~-~~~~~i~~~~~~~~r~~~~~~f~~~~-----------------------~~vli~t~~----~~~Gid~~~~ 52 (78)
T PF00271_consen 1 KFLEKKG-IKVAIIHGDMSQKERQEILKKFNSGE-----------------------IRVLIATDI----LGEGIDLPDA 52 (78)
T ss_dssp HHHHHTT-SSEEEESTTSHHHHHHHHHHHHHTTS-----------------------SSEEEESCG----GTTSSTSTTE
T ss_pred CChHHCC-CcEEEEECCCCHHHHHHHHHHhhccC-----------------------ceEEEeecc----cccccccccc
Confidence 3567777 79999999999999999999999985 799999999 9999999999
Q ss_pred CEEEEecCCCChhHHHHhhhhccCCC
Q 029806 151 RVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 151 ~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
++||+|++|++...|.|++||++|.+
T Consensus 53 ~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 53 SHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ccccccccCCCHHHHHHHhhcCCCCC
Confidence 99999999999999999999998864
No 54
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.78 E-value=9.8e-19 Score=164.43 Aligned_cols=133 Identities=8% Similarity=0.104 Sum_probs=107.3
Q ss_pred CCCceEEEEccCcchHHH-HHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHc---cCCceEEEEeccCCHHHHHH
Q 029806 20 SQPRHFYVAVDRLQFKME-TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETERTL 95 (187)
Q Consensus 20 ~~i~~~~~~~~~~~~Kl~-~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~---~~~i~~~~lhg~~~~~eR~~ 95 (187)
..+.++|..++..+ ++. .+...+..+.. ...+.+|||+++..+++.+++.|.. .+ +.+..+||+|+.++|..
T Consensus 181 ~pV~~~y~~~~~~~-~~~~~v~~~l~~~l~--~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~-~~v~~Lhg~l~~~eq~~ 256 (812)
T PRK11664 181 FPVERRYQPLPAHQ-RFDEAVARATAELLR--QESGSLLLFLPGVGEIQRVQEQLASRVASD-VLLCPLYGALSLAEQQK 256 (812)
T ss_pred ccceEEeccCchhh-hHHHHHHHHHHHHHH--hCCCCEEEEcCCHHHHHHHHHHHHHhccCC-ceEEEeeCCCCHHHHHH
Confidence 35888888777655 443 33333433222 2358999999999999999999986 34 68999999999999999
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCC--------------
Q 029806 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK-------------- 161 (187)
Q Consensus 96 ~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~-------------- 161 (187)
+++.|+.| +.+||||||+ +++|||+++|++|||+++|..
T Consensus 257 ~~~~~~~G-----------------------~rkVlvATnI----AErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 309 (812)
T PRK11664 257 AILPAPAG-----------------------RRKVVLATNI----AETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVT 309 (812)
T ss_pred HhccccCC-----------------------CeEEEEecch----HHhcccccCceEEEECCCcccccccccCCcceeEE
Confidence 99999998 4999999999 999999999999999887753
Q ss_pred ----hhHHHHhhhhccCC-CCeEEEEE
Q 029806 162 ----KETYIRRMTTCLAA-GTSFSDII 183 (187)
Q Consensus 162 ----~~~y~~R~GR~~r~-~g~~i~~v 183 (187)
..+|.||+||+||. .|.|+.+.
T Consensus 310 ~~iSkasa~QR~GRaGR~~~G~cyrL~ 336 (812)
T PRK11664 310 QRISQASMTQRAGRAGRLEPGICLHLY 336 (812)
T ss_pred EeechhhhhhhccccCCCCCcEEEEec
Confidence 36899999999886 56666654
No 55
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.78 E-value=4.1e-18 Score=146.25 Aligned_cols=109 Identities=22% Similarity=0.322 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCC-ceEEEEeccCCHHHHHHH----HHHHhccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLI----LEEFRHTAMKWN 108 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~-i~~~~lhg~~~~~eR~~~----l~~Fr~~~~~~~ 108 (187)
.|...+.++++.+ ..++++||||++++.++.+++.|.+.+. ..+..+||+|++.+|.+. ++.|+++
T Consensus 207 ~~~~~l~~l~~~~----~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~----- 277 (358)
T TIGR01587 207 GEISSLERLLEFI----KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN----- 277 (358)
T ss_pred cCHHHHHHHHHHh----hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-----
Confidence 3677777777652 3458999999999999999999987652 259999999999999764 8899998
Q ss_pred ccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 109 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
+..+||||++ +++|+|++ +++||+++.| .++|+||+||+||.+
T Consensus 278 ------------------~~~ilvaT~~----~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g 320 (358)
T TIGR01587 278 ------------------EKFVIVATQV----IEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYG 320 (358)
T ss_pred ------------------CCeEEEECcc----hhceeccC-CCEEEEcCCC--HHHHHHHhccccCCC
Confidence 4899999999 99999995 8999999877 689999999997753
No 56
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.78 E-value=7.3e-19 Score=152.26 Aligned_cols=109 Identities=22% Similarity=0.326 Sum_probs=100.7
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCC--ceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~--i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (187)
+...++||||.|+..++.|..++.++|+ ..++.+||+..+.||++.+++|++.+ .
T Consensus 503 h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d-----------------------v 559 (725)
T KOG0349|consen 503 HAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD-----------------------V 559 (725)
T ss_pred hccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC-----------------------e
Confidence 5668999999999999999999988763 58999999999999999999999996 9
Q ss_pred eEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC--CeEEEEEEee
Q 029806 129 HMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIILLV 186 (187)
Q Consensus 129 ~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~--g~~i~~v~~~ 186 (187)
+.|||||+ ++||+|+..+.++||.-+|.+...|+|||||+||.. |.+|++|..+
T Consensus 560 kflictdv----aargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~ 615 (725)
T KOG0349|consen 560 KFLICTDV----AARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATV 615 (725)
T ss_pred EEEEEehh----hhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeecc
Confidence 99999999 999999999999999999999999999999997775 8888887654
No 57
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.78 E-value=1.1e-18 Score=170.57 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=91.4
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCC--------------------------------ceEEEEeccCCHHHHHHHHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLAD--------------------------------ISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~--------------------------------i~~~~lhg~~~~~eR~~~l~~F 100 (187)
..++||||||++.++.++..|.+... ..+..+||+|+.++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 47899999999999999999975310 1256899999999999999999
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC-CCeE
Q 029806 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTSF 179 (187)
Q Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~-~g~~ 179 (187)
++|. .++||||+. +++|||+++|++||||+.|.+..+|+||+||+||+ +|.+
T Consensus 324 K~G~-----------------------LrvLVATss----LELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s 376 (1490)
T PRK09751 324 KSGE-----------------------LRCVVATSS----LELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVS 376 (1490)
T ss_pred HhCC-----------------------ceEEEeCcH----HHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCcc
Confidence 9995 999999999 99999999999999999999999999999999887 3455
Q ss_pred EEEE
Q 029806 180 SDII 183 (187)
Q Consensus 180 i~~v 183 (187)
..++
T Consensus 377 ~gli 380 (1490)
T PRK09751 377 KGLF 380 (1490)
T ss_pred EEEE
Confidence 5443
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.78 E-value=3.1e-18 Score=157.99 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=88.5
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccC-CceEEEEeccCCHHHHHHHHHHH-hcccccccccccccCCCCCcCCCCCCceeE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLILEEF-RHTAMKWNQKVTEQSGDESETGKDEHKSHM 130 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~-~i~~~~lhg~~~~~eR~~~l~~F-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 130 (187)
++++||||+++.+++.+++.|.+.. ++.+..|||+|++. .+.+++| +.| +.+|
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~g-----------------------k~kI 449 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSK-----------------------NPSI 449 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccC-----------------------ceeE
Confidence 4689999999999999999998762 26999999999974 5677887 566 5999
Q ss_pred EEEecCCCCcCcCCCCCCCCCEEEEec---CCC---------ChhHHHHhhhhccCC-CCeEEEEE
Q 029806 131 IVVTDACLPLLSSGESAISARVLINYE---LPT---------KKETYIRRMTTCLAA-GTSFSDII 183 (187)
Q Consensus 131 Lv~Td~~~~~~~rGlDi~~v~~VI~yd---~P~---------~~~~y~~R~GR~~r~-~g~~i~~v 183 (187)
|||||+ ++||||+|+|++||++| .|. +.++|.||+||+||. +|.++.+.
T Consensus 450 LVATdI----AERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~~G~c~rLy 511 (675)
T PHA02653 450 IISTPY----LESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVSPGTYVYFY 511 (675)
T ss_pred EeccCh----hhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCCCCeEEEEE
Confidence 999999 99999999999999999 675 889999999999887 47777665
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.77 E-value=5.7e-18 Score=157.09 Aligned_cols=106 Identities=12% Similarity=0.199 Sum_probs=90.1
Q ss_pred CCCcEEEEeCCh--------hhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCC
Q 029806 52 PGLPMIVCCSSR--------DELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 122 (187)
Q Consensus 52 ~~~k~IVF~~~~--------~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~ 122 (187)
.+.+++|||+.+ ..++++++.|.+. +.+.+..+||+|+.++|..++++|++|+
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~------------------ 531 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGE------------------ 531 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCC------------------
Confidence 357999999954 4556777777654 2268999999999999999999999984
Q ss_pred CCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCC-ChhHHHHhhhhccCCCCeEEEEEE
Q 029806 123 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAGTSFSDIIL 184 (187)
Q Consensus 123 ~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~-~~~~y~~R~GR~~r~~g~~i~~v~ 184 (187)
.+|||||++ +++|+|+|++++||+|+.|. ....|.||+||+||.+..+++++.
T Consensus 532 -----~~ILVaT~v----ie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill 585 (681)
T PRK10917 532 -----IDILVATTV----IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLL 585 (681)
T ss_pred -----CCEEEECcc----eeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEE
Confidence 999999999 99999999999999999998 467788899999988766666654
No 60
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.76 E-value=7e-18 Score=156.29 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=104.9
Q ss_pred EEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccc
Q 029806 27 VAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMK 106 (187)
Q Consensus 27 ~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~ 106 (187)
+.+...+ |...+.+.+++.. ..+.++||||+++..++.++..|.+.| +++..|||++.+++|..+.++|+.
T Consensus 402 i~~~~~~-K~~ai~~~i~~~~---~~~~pvLIft~s~~~se~ls~~L~~~g-i~~~~L~a~~~~~E~~ii~~ag~~---- 472 (762)
T TIGR03714 402 IYATLPE-KLMATLEDVKEYH---ETGQPVLLITGSVEMSEIYSELLLREG-IPHNLLNAQNAAKEAQIIAEAGQK---- 472 (762)
T ss_pred EEECHHH-HHHHHHHHHHHHh---hCCCCEEEEECcHHHHHHHHHHHHHCC-CCEEEecCCChHHHHHHHHHcCCC----
Confidence 4445555 9999999887732 346899999999999999999999988 899999999999988777666655
Q ss_pred ccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCC---------CCCEEEEecCCCChhHHHHhhhhccCCC-
Q 029806 107 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---------SARVLINYELPTKKETYIRRMTTCLAAG- 176 (187)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~---------~v~~VI~yd~P~~~~~y~~R~GR~~r~~- 176 (187)
..|+||||+ ++||+|++ ++.+|++|++|..... .||+||+||.+
T Consensus 473 ---------------------g~VlIATdm----AgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~ 526 (762)
T TIGR03714 473 ---------------------GAVTVATSM----AGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGD 526 (762)
T ss_pred ---------------------CeEEEEccc----cccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCC
Confidence 569999999 99999999 9999999999998777 99999997775
Q ss_pred -CeEEEEEEe
Q 029806 177 -TSFSDIILL 185 (187)
Q Consensus 177 -g~~i~~v~~ 185 (187)
|.++.|+++
T Consensus 527 ~G~s~~~is~ 536 (762)
T TIGR03714 527 PGSSQFFVSL 536 (762)
T ss_pred ceeEEEEEcc
Confidence 777777653
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.76 E-value=1.3e-17 Score=155.95 Aligned_cols=138 Identities=18% Similarity=0.248 Sum_probs=99.2
Q ss_pred CCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHH-----
Q 029806 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT----- 94 (187)
Q Consensus 20 ~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~----- 94 (187)
.++.|+ +.++... |+..+...+..+.. ..++++||||||++.++.+++.|.+.+ + ..|||+|++.+|.
T Consensus 243 ~ki~q~-v~v~~e~-Kl~~lv~~L~~ll~--e~g~~vLVF~NTv~~Aq~L~~~L~~~g-~--~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 243 KKIVKL-VPPSDEK-FLSTMVKELNLLMK--DSGGAILVFCRTVKHVRKVFAKLPKEK-F--ELLTGTLRGAERDDLVKK 315 (844)
T ss_pred cceEEE-EecChHH-HHHHHHHHHHHHHh--hCCCcEEEEECCHHHHHHHHHHHHhcC-C--eEeeCCCCHHHHhhHHHH
Confidence 345554 3444444 66655555443222 345799999999999999999999877 4 8999999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccC
Q 029806 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 174 (187)
Q Consensus 95 ~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r 174 (187)
.++++|+....+ +.+ .. .....++||||++ ++||||++. ++||++..| .++|+||+||++|
T Consensus 316 ~il~~Fk~~~~~---------g~~--~~-~~~g~~ILVATdV----aerGLDId~-d~VI~d~aP--~esyIQRiGRtgR 376 (844)
T TIGR02621 316 EIFNRFLPQMLS---------GSR--AR-PQQGTVYLVCTSA----GEVGVNISA-DHLVCDLAP--FESMQQRFGRVNR 376 (844)
T ss_pred HHHHHHhccccc---------ccc--cc-ccccceEEeccch----hhhcccCCc-ceEEECCCC--HHHHHHHhcccCC
Confidence 889999872100 000 00 0113689999999 999999986 899998876 6999999999966
Q ss_pred CC---CeEEEEE
Q 029806 175 AG---TSFSDII 183 (187)
Q Consensus 175 ~~---g~~i~~v 183 (187)
.+ +..+.++
T Consensus 377 ~G~~~~~~i~vv 388 (844)
T TIGR02621 377 FGELQACQIAVV 388 (844)
T ss_pred CCCCCCceEEEE
Confidence 54 3445554
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.75 E-value=1.9e-17 Score=152.43 Aligned_cols=106 Identities=14% Similarity=0.185 Sum_probs=90.0
Q ss_pred CCCcEEEEeCCh--------hhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCC
Q 029806 52 PGLPMIVCCSSR--------DELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 122 (187)
Q Consensus 52 ~~~k~IVF~~~~--------~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~ 122 (187)
.+.+++|||+.. ..++.+++.|.+. +.+.+..+||+|+.++|..++++|++|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~------------------ 508 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGE------------------ 508 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCC------------------
Confidence 357999999875 4566777777653 3368999999999999999999999984
Q ss_pred CCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCC-ChhHHHHhhhhccCCCCeEEEEEE
Q 029806 123 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAGTSFSDIIL 184 (187)
Q Consensus 123 ~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~-~~~~y~~R~GR~~r~~g~~i~~v~ 184 (187)
.+|||||++ +++|+|+|++++||+|+.|. ....|.||+||+||.+..+.+++.
T Consensus 509 -----~~ILVaT~v----ie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~ 562 (630)
T TIGR00643 509 -----VDILVATTV----IEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLV 562 (630)
T ss_pred -----CCEEEECce----eecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEE
Confidence 999999999 99999999999999999997 577888899999888766666554
No 63
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.73 E-value=4.2e-17 Score=150.55 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
.|...+.+.+.... ..+.++||||+++..++++++.|.+.| +++..||++ ..+|...+..|+.+
T Consensus 389 ~k~~ai~~~i~~~~---~~grpvLV~t~si~~se~ls~~L~~~g-i~~~~Lna~--q~~rEa~ii~~ag~---------- 452 (745)
T TIGR00963 389 EKWKAVVDEIKERH---AKGQPVLVGTTSVEKSELLSNLLKERG-IPHNVLNAK--NHEREAEIIAQAGR---------- 452 (745)
T ss_pred HHHHHHHHHHHHHH---hcCCCEEEEeCcHHHHHHHHHHHHHcC-CCeEEeeCC--hHHHHHHHHHhcCC----------
Confidence 38888887775522 357899999999999999999999998 799999998 78999999999988
Q ss_pred cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCC-------CCEEEEecCCCChhHHHHhhhhccCCC--CeEEEEEE
Q 029806 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-------ARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 184 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~-------v~~VI~yd~P~~~~~y~~R~GR~~r~~--g~~i~~v~ 184 (187)
+..|+|||++ ++||+|++. .-|||+|++|.+.+.|.||+||+||.+ |.+..|++
T Consensus 453 -------------~g~VtIATnm----AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls 515 (745)
T TIGR00963 453 -------------KGAVTIATNM----AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLS 515 (745)
T ss_pred -------------CceEEEEecc----ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEe
Confidence 4999999999 999999999 559999999999999999999997775 77777765
Q ss_pred e
Q 029806 185 L 185 (187)
Q Consensus 185 ~ 185 (187)
+
T Consensus 516 ~ 516 (745)
T TIGR00963 516 L 516 (745)
T ss_pred c
Confidence 4
No 64
>PRK02362 ski2-like helicase; Provisional
Probab=99.72 E-value=3.5e-17 Score=153.07 Aligned_cols=104 Identities=21% Similarity=0.271 Sum_probs=90.4
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCC-----------------------------------ceEEEEeccCCHHHHHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLAD-----------------------------------ISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~-----------------------------------i~~~~lhg~~~~~eR~~~l 97 (187)
++++||||++++.++.++..|..... ..+.++|++|+..+|..+.
T Consensus 243 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve 322 (737)
T PRK02362 243 GGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVE 322 (737)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHH
Confidence 58999999999999998888764310 1478899999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEE----ec-----CCCChhHHHHh
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE-----LPTKKETYIRR 168 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~----yd-----~P~~~~~y~~R 168 (187)
+.|++|. +++||||+. +++|+|+|.+++||+ || .|.+..+|.||
T Consensus 323 ~~Fr~G~-----------------------i~VLvaT~t----la~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm 375 (737)
T PRK02362 323 DAFRDRL-----------------------IKVISSTPT----LAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQM 375 (737)
T ss_pred HHHHcCC-----------------------CeEEEechh----hhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHH
Confidence 9999994 999999999 999999999999998 87 68999999999
Q ss_pred hhhccCCC----CeEEEEE
Q 029806 169 MTTCLAAG----TSFSDII 183 (187)
Q Consensus 169 ~GR~~r~~----g~~i~~v 183 (187)
+||+||.+ |.++.++
T Consensus 376 ~GRAGR~g~d~~G~~ii~~ 394 (737)
T PRK02362 376 AGRAGRPGLDPYGEAVLLA 394 (737)
T ss_pred hhcCCCCCCCCCceEEEEe
Confidence 99998864 6666554
No 65
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.72 E-value=7.7e-17 Score=147.81 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=105.2
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc--CCceEEEEec--------cCCHHHHHHHHHHH
Q 029806 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHS--------DLAETERTLILEEF 100 (187)
Q Consensus 31 ~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~--~~i~~~~lhg--------~~~~~eR~~~l~~F 100 (187)
..+.|++.|++++.+... ..+..++||||.++..++.|..+|... .++++..+-| +|++++++++++.|
T Consensus 392 ~~npkle~l~~~l~e~f~-~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~F 470 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFE-QNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKF 470 (746)
T ss_pred ccChhHHHHHHHHHHHhh-cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHH
Confidence 345599999999988555 788899999999999999999999832 1144444444 69999999999999
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC-CCeE
Q 029806 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTSF 179 (187)
Q Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~-~g~~ 179 (187)
++|+ .++||||.+ +++|||+++|++||-||.-+++..++||.|| ||+ +|.+
T Consensus 471 r~G~-----------------------~NvLVATSV----~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~~ 522 (746)
T KOG0354|consen 471 RDGE-----------------------INVLVATSV----AEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARNSKC 522 (746)
T ss_pred hCCC-----------------------ccEEEEecc----hhccCCcccccEEEEecCCccHHHHHHHhcc-ccccCCeE
Confidence 9995 999999999 9999999999999999999999999999999 666 4555
Q ss_pred EEEE
Q 029806 180 SDII 183 (187)
Q Consensus 180 i~~v 183 (187)
+.+.
T Consensus 523 vll~ 526 (746)
T KOG0354|consen 523 VLLT 526 (746)
T ss_pred EEEE
Confidence 5443
No 66
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1.1e-16 Score=148.74 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
.|...|.+.+.... ..+.++||||+|+..++.++..|.+.| +++..||+++...|+.-+.++++.|
T Consensus 424 ~K~~al~~~i~~~~---~~g~pvLI~t~si~~se~ls~~L~~~g-i~~~~Lna~~~~~Ea~ii~~ag~~g---------- 489 (796)
T PRK12906 424 SKFNAVVKEIKERH---AKGQPVLVGTVAIESSERLSHLLDEAG-IPHAVLNAKNHAKEAEIIMNAGQRG---------- 489 (796)
T ss_pred HHHHHHHHHHHHHH---hCCCCEEEEeCcHHHHHHHHHHHHHCC-CCeeEecCCcHHHHHHHHHhcCCCc----------
Confidence 38999998886622 357899999999999999999999998 8999999999988888888877775
Q ss_pred cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCC---CCCC-----EEEEecCCCChhHHHHhhhhccCCC--CeEEEEE
Q 029806 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESA---ISAR-----VLINYELPTKKETYIRRMTTCLAAG--TSFSDII 183 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi---~~v~-----~VI~yd~P~~~~~y~~R~GR~~r~~--g~~i~~v 183 (187)
.|+|||++ ++||+|+ ++|. |||+++.|.+.+.|.||+||+||.| |.+..|+
T Consensus 490 ---------------~VtIATnm----AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~ 550 (796)
T PRK12906 490 ---------------AVTIATNM----AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL 550 (796)
T ss_pred ---------------eEEEEecc----ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEE
Confidence 49999999 9999999 4899 9999999999999999999997775 7777776
Q ss_pred Ee
Q 029806 184 LL 185 (187)
Q Consensus 184 ~~ 185 (187)
++
T Consensus 551 sl 552 (796)
T PRK12906 551 SL 552 (796)
T ss_pred ec
Confidence 54
No 67
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=1.2e-17 Score=143.92 Aligned_cols=136 Identities=18% Similarity=0.238 Sum_probs=123.0
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
-..+.+++.|..+...+ |...|..++... ...++.+|||.+...++.+...|...| +.+..++|.|++.-|...
T Consensus 230 kise~lk~~f~~~~~a~-K~aaLl~il~~~----~~~~~t~vf~~tk~hve~~~~ll~~~g-~~~s~iysslD~~aRk~~ 303 (529)
T KOG0337|consen 230 KISELLKVRFFRVRKAE-KEAALLSILGGR----IKDKQTIVFVATKHHVEYVRGLLRDFG-GEGSDIYSSLDQEARKIN 303 (529)
T ss_pred hcchhhhhheeeeccHH-HHHHHHHHHhcc----ccccceeEEecccchHHHHHHHHHhcC-CCccccccccChHhhhhc
Confidence 34567888899999988 999999999883 235799999999999999999999998 599999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhcc--C
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--A 174 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~--r 174 (187)
+..|+.+ +..+||.||+ ++||+|+|-.+-|||||+|.+..-|+||+||+. +
T Consensus 304 ~~~F~~~-----------------------k~~~lvvTdv----aaRG~diplldnvinyd~p~~~klFvhRVgr~arag 356 (529)
T KOG0337|consen 304 GRDFRGR-----------------------KTSILVVTDV----AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAG 356 (529)
T ss_pred cccccCC-----------------------ccceEEEehh----hhccCCCccccccccccCCCCCceEEEEecchhhcc
Confidence 9999998 5899999999 999999999999999999999999999999994 6
Q ss_pred CCCeEEEEEEe
Q 029806 175 AGTSFSDIILL 185 (187)
Q Consensus 175 ~~g~~i~~v~~ 185 (187)
+.|.+|++|..
T Consensus 357 rtg~aYs~V~~ 367 (529)
T KOG0337|consen 357 RTGRAYSLVAS 367 (529)
T ss_pred ccceEEEEEec
Confidence 67999998863
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.71 E-value=1.6e-16 Score=142.84 Aligned_cols=111 Identities=11% Similarity=0.088 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
|...+.+++..+. ..+.+++|||++++.++.+++.|.+.| +++..+||+|+.++|..+++.|+.+.
T Consensus 329 Rn~~I~~~~~~~~---~~~~~~lV~~~~~~h~~~L~~~L~~~g-~~v~~i~G~~~~~eR~~i~~~~~~~~---------- 394 (501)
T PHA02558 329 RNKWIANLALKLA---KKGENTFVMFKYVEHGKPLYEMLKKVY-DKVYYVSGEVDTEDRNEMKKIAEGGK---------- 394 (501)
T ss_pred HHHHHHHHHHHHH---hcCCCEEEEEEEHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHHHHHhCCC----------
Confidence 5666777766533 234688888899999999999999988 69999999999999999999999873
Q ss_pred CCCCCcCCCCCCceeEEEEe-cCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 115 SGDESETGKDEHKSHMIVVT-DACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~T-d~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
..+||+| ++ +++|+|+|++++||++++|.+...|+||+||++|..
T Consensus 395 -------------~~vLvaT~~~----l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~ 440 (501)
T PHA02558 395 -------------GIIIVASYGV----FSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKH 440 (501)
T ss_pred -------------CeEEEEEcce----eccccccccccEEEEecCCcchhhhhhhhhccccCC
Confidence 7899998 89 999999999999999999999999999999997763
No 69
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=1.6e-16 Score=147.12 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
|+..+..+++.. ...+.++||||++...++.++..| + +..+||+++..+|.+++++|+.+.
T Consensus 481 K~~~~~~Li~~h---e~~g~kiLVF~~~~~~l~~~a~~L---~---~~~I~G~ts~~ER~~il~~Fr~~~---------- 541 (732)
T TIGR00603 481 KFRACQFLIRFH---EQRGDKIIVFSDNVFALKEYAIKL---G---KPFIYGPTSQQERMQILQNFQHNP---------- 541 (732)
T ss_pred HHHHHHHHHHHH---hhcCCeEEEEeCCHHHHHHHHHHc---C---CceEECCCCHHHHHHHHHHHHhCC----------
Confidence 788887887651 135789999999999999998887 3 345999999999999999999763
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCC-ChhHHHHhhhhccCCC
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAG 176 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~-~~~~y~~R~GR~~r~~ 176 (187)
..++||+|++ +.+|+|+|++++||+++.|. +...|+||+||++|.+
T Consensus 542 ------------~i~vLv~SkV----gdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~ 588 (732)
T TIGR00603 542 ------------KVNTIFLSKV----GDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAK 588 (732)
T ss_pred ------------CccEEEEecc----cccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCC
Confidence 4899999999 99999999999999999984 9999999999997764
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.70 E-value=1.8e-16 Score=136.94 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=89.1
Q ss_pred CCCceEEEEccCcchHHHHHHHHHHHHhc--CCCCCCcEEEEeCChhhHHHHHHHHHccC-CceEEEEeccCCHHHHHHH
Q 029806 20 SQPRHFYVAVDRLQFKMETLVELLHLVVA--GRRPGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLI 96 (187)
Q Consensus 20 ~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~--~~~~~~k~IVF~~~~~~~~~l~~~L~~~~-~i~~~~lhg~~~~~eR~~~ 96 (187)
..+.+.+.. ... .|...+.++++.+.. ...+++++||||++++.+++++..|++.+ .+.+..+||.+++.+|.+.
T Consensus 239 ~~i~~~~~~-~~~-~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~ 316 (357)
T TIGR03158 239 PPVELELIP-APD-FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA 316 (357)
T ss_pred cceEEEEEe-CCc-hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh
Confidence 366666655 333 366666655554321 11356799999999999999999998764 2478899999999988643
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhcc
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 173 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~ 173 (187)
+ +..+||||++ ++||+|++.+ +|| ++ |.+.++|+||+||+|
T Consensus 317 ------~-----------------------~~~iLVaTdv----~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 ------M-----------------------QFDILLGTST----VDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ------c-----------------------cCCEEEEecH----HhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 2 2889999999 9999999987 666 56 999999999999985
No 71
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.68 E-value=3.3e-16 Score=151.51 Aligned_cols=133 Identities=11% Similarity=0.158 Sum_probs=101.8
Q ss_pred CCCceEEEEccCcc-----hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCC--ceEEEEeccCCHHH
Q 029806 20 SQPRHFYVAVDRLQ-----FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETE 92 (187)
Q Consensus 20 ~~i~~~~~~~~~~~-----~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~--i~~~~lhg~~~~~e 92 (187)
..+.++|..+...+ .++..+.+.+..+.. .+.+.+||||++...++.+++.|.+.+. +.+..|||+|+.++
T Consensus 250 ~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~--~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~e 327 (1294)
T PRK11131 250 YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGR--EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSE 327 (1294)
T ss_pred ccceEEEeecccccchhhHHHHHHHHHHHHHHhc--CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHH
Confidence 34677777664322 134444444444332 3458899999999999999999987652 34788999999999
Q ss_pred HHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEec---------------
Q 029806 93 RTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE--------------- 157 (187)
Q Consensus 93 R~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd--------------- 157 (187)
|..+++.+ + ..+|+||||+ +++|||+|+|++|||++
T Consensus 328 Q~~Vf~~~--g-----------------------~rkIIVATNI----AEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~ 378 (1294)
T PRK11131 328 QNRVFQSH--S-----------------------GRRIVLATNV----AETSLTVPGIKYVIDPGTARISRYSYRTKVQR 378 (1294)
T ss_pred HHHHhccc--C-----------------------CeeEEEeccH----HhhccccCcceEEEECCCccccccccccCccc
Confidence 99988752 3 4899999999 99999999999999986
Q ss_pred CC---CChhHHHHhhhhccCC-CCeEEEEE
Q 029806 158 LP---TKKETYIRRMTTCLAA-GTSFSDII 183 (187)
Q Consensus 158 ~P---~~~~~y~~R~GR~~r~-~g~~i~~v 183 (187)
+| .|..+|.||+||+||. .|.|+.++
T Consensus 379 Lp~~~iSkasa~QRaGRAGR~~~G~c~rLy 408 (1294)
T PRK11131 379 LPIEPISQASANQRKGRCGRVSEGICIRLY 408 (1294)
T ss_pred CCeeecCHhhHhhhccccCCCCCcEEEEeC
Confidence 44 4568999999999887 46666554
No 72
>PRK09401 reverse gyrase; Reviewed
Probab=99.68 E-value=2.3e-16 Score=152.99 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=99.5
Q ss_pred CCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhh---HHHHHHHHHccCCceEEEEeccCCHHHHH
Q 029806 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDE---LDAVCSAVSNLADISFSSLHSDLAETERT 94 (187)
Q Consensus 18 ~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~---~~~l~~~L~~~~~i~~~~lhg~~~~~eR~ 94 (187)
...+|.|.|+.++ + |...|.++++.+ +.++||||+++.. ++++++.|...| +++..+||+| .
T Consensus 302 ~~rnI~~~yi~~~--~-k~~~L~~ll~~l------~~~~LIFv~t~~~~~~ae~l~~~L~~~g-i~v~~~hg~l-----~ 366 (1176)
T PRK09401 302 YLRNIVDSYIVDE--D-SVEKLVELVKRL------GDGGLIFVPSDKGKEYAEELAEYLEDLG-INAELAISGF-----E 366 (1176)
T ss_pred ccCCceEEEEEcc--c-HHHHHHHHHHhc------CCCEEEEEecccChHHHHHHHHHHHHCC-CcEEEEeCcH-----H
Confidence 4578999998776 4 788888888762 2589999999888 999999999998 7999999999 2
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEE----ecCCCCcCcCCCCCCC-CCEEEEecCCC------Chh
Q 029806 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAIS-ARVLINYELPT------KKE 163 (187)
Q Consensus 95 ~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~----Td~~~~~~~rGlDi~~-v~~VI~yd~P~------~~~ 163 (187)
+.+++|++|+ .++||+ ||+ ++||||+|+ |++|||||+|. ..+
T Consensus 367 ~~l~~F~~G~-----------------------~~VLVatas~tdv----~aRGIDiP~~IryVI~y~vP~~~~~~~~~~ 419 (1176)
T PRK09401 367 RKFEKFEEGE-----------------------VDVLVGVASYYGV----LVRGIDLPERIRYAIFYGVPKFKFSLEEEL 419 (1176)
T ss_pred HHHHHHHCCC-----------------------CCEEEEecCCCCc----eeecCCCCcceeEEEEeCCCCEEEeccccc
Confidence 3459999995 999999 689 999999999 89999999999 789
Q ss_pred HHHHhhhhcc
Q 029806 164 TYIRRMTTCL 173 (187)
Q Consensus 164 ~y~~R~GR~~ 173 (187)
.|.||+||+.
T Consensus 420 ~~~~~~~r~~ 429 (1176)
T PRK09401 420 APPFLLLRLL 429 (1176)
T ss_pred cCHHHHHHHH
Confidence 9999999983
No 73
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.67 E-value=3.1e-16 Score=105.86 Aligned_cols=81 Identities=30% Similarity=0.485 Sum_probs=74.7
Q ss_pred HHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCC
Q 029806 68 AVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESA 147 (187)
Q Consensus 68 ~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi 147 (187)
.++++|...+ +.+..+||+|+.++|..+++.|+++. ..+|++|++ +++|+|+
T Consensus 2 ~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~-----------------------~~vli~t~~----~~~Gi~~ 53 (82)
T smart00490 2 ELAELLKELG-IKVARLHGGLSQEEREEILEKFNNGK-----------------------IKVLVATDV----AERGLDL 53 (82)
T ss_pred HHHHHHHHCC-CeEEEEECCCCHHHHHHHHHHHHcCC-----------------------CeEEEECCh----hhCCcCh
Confidence 4677787777 69999999999999999999999984 799999999 9999999
Q ss_pred CCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 148 ISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 148 ~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
|++++||.+++|.+...|.|++||++|.+
T Consensus 54 ~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 54 PGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred hcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 99999999999999999999999998753
No 74
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.67 E-value=5.8e-16 Score=146.53 Aligned_cols=106 Identities=26% Similarity=0.378 Sum_probs=98.9
Q ss_pred CCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 50 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 50 ~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
..+....||||.++.+++.++..|+..| +.+..+|++|++++|..+.+.|-.++ .+
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~-~~a~~YHAGl~~~~R~~Vq~~w~~~~-----------------------~~ 537 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLG-KSAAFYHAGLPPKERETVQKAWMSDK-----------------------IR 537 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhc-hhhHhhhcCCCHHHHHHHHHHHhcCC-----------------------Ce
Confidence 4678999999999999999999999999 79999999999999999999999984 99
Q ss_pred EEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCeEEEEE
Q 029806 130 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDII 183 (187)
Q Consensus 130 iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~~i~~v 183 (187)
|+++|=+ +++|||.|||+.||||.+|.+.+.|.|.+||+||-+-...|.+
T Consensus 538 VivATVA----FGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l 587 (941)
T KOG0351|consen 538 VIVATVA----FGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVL 587 (941)
T ss_pred EEEEEee----ccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEE
Confidence 9999999 9999999999999999999999999999999988875555543
No 75
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=1.3e-15 Score=143.29 Aligned_cols=137 Identities=14% Similarity=0.146 Sum_probs=111.1
Q ss_pred CCCCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHH
Q 029806 14 QSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER 93 (187)
Q Consensus 14 ~~~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR 93 (187)
-.|..+.+..-. ++....+ |...|.+.+.... ..+.++||||+|+..++.|+..|...| |++..||+ .+.+|
T Consensus 564 nrP~~R~D~~d~-vy~t~~e-K~~Ali~~I~~~~---~~grpVLIft~Sve~sE~Ls~~L~~~g-I~h~vLna--kq~~R 635 (1025)
T PRK12900 564 NKPIVRKDMDDL-VYKTRRE-KYNAIVLKVEELQ---KKGQPVLVGTASVEVSETLSRMLRAKR-IAHNVLNA--KQHDR 635 (1025)
T ss_pred CCCcceecCCCe-EecCHHH-HHHHHHHHHHHHh---hCCCCEEEEeCcHHHHHHHHHHHHHcC-CCceeecC--CHHHh
Confidence 333444443322 3344444 9999999997632 346899999999999999999999998 89999997 57899
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCC---CCC-----EEEEecCCCChhHH
Q 029806 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETY 165 (187)
Q Consensus 94 ~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~---~v~-----~VI~yd~P~~~~~y 165 (187)
...+..|+.+ +..|+|||++ ++||+|++ +|. +||+++.|.+.+.|
T Consensus 636 Ea~Iia~AG~-----------------------~g~VtIATNM----AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid 688 (1025)
T PRK12900 636 EAEIVAEAGQ-----------------------KGAVTIATNM----AGRGTDIKLGEGVRELGGLFILGSERHESRRID 688 (1025)
T ss_pred HHHHHHhcCC-----------------------CCeEEEeccC----cCCCCCcCCccchhhhCCceeeCCCCCchHHHH
Confidence 9999999998 4999999999 99999999 554 45999999999999
Q ss_pred HHhhhhccCCC--CeEEEEEEe
Q 029806 166 IRRMTTCLAAG--TSFSDIILL 185 (187)
Q Consensus 166 ~~R~GR~~r~~--g~~i~~v~~ 185 (187)
.||+||+||.+ |.++.|+++
T Consensus 689 ~Ql~GRtGRqGdpGsS~ffvSl 710 (1025)
T PRK12900 689 RQLRGRAGRQGDPGESVFYVSL 710 (1025)
T ss_pred HHHhhhhhcCCCCcceEEEech
Confidence 99999997775 777777764
No 76
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.63 E-value=2.4e-15 Score=145.87 Aligned_cols=132 Identities=8% Similarity=0.123 Sum_probs=101.4
Q ss_pred CCceEEEEccCc-----chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC--CceEEEEeccCCHHHH
Q 029806 21 QPRHFYVAVDRL-----QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETER 93 (187)
Q Consensus 21 ~i~~~~~~~~~~-----~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~--~i~~~~lhg~~~~~eR 93 (187)
.+..+|...... ..+.+.+.+.+..+.. ...+.+|||+++...++.+++.|.+.+ .+.+..|||+|+.++|
T Consensus 244 PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~--~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ 321 (1283)
T TIGR01967 244 PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA--EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQ 321 (1283)
T ss_pred cceeEEecccccccchhhhHHHHHHHHHHHHHh--hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHH
Confidence 355566544321 1256667777766443 245899999999999999999998764 2568999999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCC-------------
Q 029806 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------------- 160 (187)
Q Consensus 94 ~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~------------- 160 (187)
..+++.+ . ..+|+|||++ +++|||+|+|++||+++++.
T Consensus 322 ~~vf~~~---~----------------------~rkIVLATNI----AEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L 372 (1283)
T TIGR01967 322 QRVFQPH---S----------------------GRRIVLATNV----AETSLTVPGIHYVIDTGTARISRYSYRTKVQRL 372 (1283)
T ss_pred HHHhCCC---C----------------------CceEEEeccH----HHhccccCCeeEEEeCCCccccccccccCcccc
Confidence 9885443 1 3789999999 99999999999999999543
Q ss_pred -----ChhHHHHhhhhccCCC-CeEEEEE
Q 029806 161 -----KKETYIRRMTTCLAAG-TSFSDII 183 (187)
Q Consensus 161 -----~~~~y~~R~GR~~r~~-g~~i~~v 183 (187)
|..+|.||+||+||.+ |.|+.+.
T Consensus 373 ~~~~ISkasa~QRaGRAGR~~~G~cyRLy 401 (1283)
T TIGR01967 373 PIEPISQASANQRKGRCGRVAPGICIRLY 401 (1283)
T ss_pred CCccCCHHHHHHHhhhhCCCCCceEEEec
Confidence 5689999999998874 6666543
No 77
>PRK00254 ski2-like helicase; Provisional
Probab=99.63 E-value=2e-15 Score=140.95 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=86.8
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc---------------------------------CCceEEEEeccCCHHHHHHHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL---------------------------------ADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~---------------------------------~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
++++||||++++.++.++..|.+. . ..+.++|++|+.++|..+.+.
T Consensus 238 ~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~gv~~hHagl~~~eR~~ve~~ 316 (720)
T PRK00254 238 GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALR-GGVAFHHAGLGRTERVLIEDA 316 (720)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHh-hCEEEeCCCCCHHHHHHHHHH
Confidence 579999999999998877666321 1 148899999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEE-------ecCCC-ChhHHHHhhhh
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN-------YELPT-KKETYIRRMTT 171 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~-------yd~P~-~~~~y~~R~GR 171 (187)
|++|. +++||||+. +++|+|+|.+++||. |+.|. +..+|+||+||
T Consensus 317 F~~G~-----------------------i~VLvaT~t----La~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GR 369 (720)
T PRK00254 317 FREGL-----------------------IKVITATPT----LSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGR 369 (720)
T ss_pred HHCCC-----------------------CeEEEeCcH----HhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhc
Confidence 99994 999999999 999999999999993 66655 57799999999
Q ss_pred ccCCC----CeEEEEE
Q 029806 172 CLAAG----TSFSDII 183 (187)
Q Consensus 172 ~~r~~----g~~i~~v 183 (187)
+||.+ |.++.++
T Consensus 370 AGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 370 AGRPKYDEVGEAIIVA 385 (720)
T ss_pred cCCCCcCCCceEEEEe
Confidence 98863 7777665
No 78
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.61 E-value=3.4e-15 Score=139.27 Aligned_cols=96 Identities=14% Similarity=0.196 Sum_probs=90.8
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
...++||+||+.+++.++..|++.+...+...||+++.+.|..+.++|++|+ .+.+|
T Consensus 253 ~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~-----------------------lravV 309 (814)
T COG1201 253 HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE-----------------------LKAVV 309 (814)
T ss_pred cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC-----------------------ceEEE
Confidence 3589999999999999999999887568999999999999999999999995 99999
Q ss_pred EecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC
Q 029806 133 VTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 175 (187)
Q Consensus 133 ~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~ 175 (187)
||.- ++-|||+.++++||+|.-|.++..++||+||+|.+
T Consensus 310 ~TSS----LELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr 348 (814)
T COG1201 310 ATSS----LELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHR 348 (814)
T ss_pred Eccc----hhhccccCCceEEEEeCCcHHHHHHhHhccccccc
Confidence 9999 99999999999999999999999999999999655
No 79
>PRK14701 reverse gyrase; Provisional
Probab=99.59 E-value=6e-15 Score=146.42 Aligned_cols=115 Identities=11% Similarity=0.161 Sum_probs=95.3
Q ss_pred CCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhH---HHHHHHHHccCCceEEEEeccCCHHHHH
Q 029806 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDEL---DAVCSAVSNLADISFSSLHSDLAETERT 94 (187)
Q Consensus 18 ~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~---~~l~~~L~~~~~i~~~~lhg~~~~~eR~ 94 (187)
...++.|.|+.++... | ..|.++++.. +.+.||||++++.+ +++++.|.+.| +++..+||+ |.
T Consensus 303 ~lr~i~~~yi~~~~~~-k-~~L~~ll~~~------g~~gIVF~~t~~~~e~ae~la~~L~~~G-i~a~~~h~~-----R~ 368 (1638)
T PRK14701 303 ALRNIVDVYLNPEKII-K-EHVRELLKKL------GKGGLIFVPIDEGAEKAEEIEKYLLEDG-FKIELVSAK-----NK 368 (1638)
T ss_pred CCCCcEEEEEECCHHH-H-HHHHHHHHhC------CCCeEEEEeccccchHHHHHHHHHHHCC-CeEEEecch-----HH
Confidence 4568999998876554 5 5677888761 36899999998864 89999999998 799999995 89
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCC-CCEEEEecCCC---ChhHHHHhh
Q 029806 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-ARVLINYELPT---KKETYIRRM 169 (187)
Q Consensus 95 ~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~-v~~VI~yd~P~---~~~~y~~R~ 169 (187)
..+++|++|+ .+|||+|+..+-.++||||+|+ |++|||||+|. +.+.|.|..
T Consensus 369 ~~l~~F~~G~-----------------------~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~ 424 (1638)
T PRK14701 369 KGFDLFEEGE-----------------------IDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTI 424 (1638)
T ss_pred HHHHHHHcCC-----------------------CCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccch
Confidence 9999999995 9999999521111999999999 99999999999 888887766
No 80
>PRK01172 ski2-like helicase; Provisional
Probab=99.57 E-value=1.8e-14 Score=133.69 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=81.8
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccC----C--------------------ceEEEEeccCCHHHHHHHHHHHhcccccc
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLA----D--------------------ISFSSLHSDLAETERTLILEEFRHTAMKW 107 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~----~--------------------i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~ 107 (187)
.++++||||++++.++.++..|.+.. . ..+..+||+|+.++|..+.+.|++|.
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~--- 311 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRY--- 311 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCC---
Confidence 35899999999999999998886531 0 13678999999999999999999984
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecC---------CCChhHHHHhhhhccCCC
Q 029806 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL---------PTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~---------P~~~~~y~~R~GR~~r~~ 176 (187)
++|||||++ +++|+|+|+. .||.+|. |-+..+|.||+||+||.+
T Consensus 312 --------------------i~VLvaT~~----la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 312 --------------------IKVIVATPT----LAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred --------------------CeEEEecch----hhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 999999999 9999999985 5555554 457889999999998875
No 81
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.54 E-value=2.1e-14 Score=128.13 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=115.4
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhc---CCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVA---GRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER 93 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~---~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR 93 (187)
..|-.|..+.+.+.++..|.+++.++.+.=+. .....+|+|||++|++.+.+++.+|..+| +++..+|++|+..+|
T Consensus 401 ~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG-~~a~pYHaGL~y~eR 479 (830)
T COG1202 401 ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKG-LKAAPYHAGLPYKER 479 (830)
T ss_pred CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCC-cccccccCCCcHHHH
Confidence 45667888888999877799999999975222 12345999999999999999999999998 799999999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEE---EecCC-CChhHHHHhh
Q 029806 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI---NYELP-TKKETYIRRM 169 (187)
Q Consensus 94 ~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI---~yd~P-~~~~~y~~R~ 169 (187)
+.+-..|.+++ +.++|+|-+ ++-|+|||.-.+|+ -.+.- -++..|.|+.
T Consensus 480 k~vE~~F~~q~-----------------------l~~VVTTAA----L~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~ 532 (830)
T COG1202 480 KSVERAFAAQE-----------------------LAAVVTTAA----LAAGVDFPASQVIFESLAMGIEWLSVREFQQML 532 (830)
T ss_pred HHHHHHHhcCC-----------------------cceEeehhh----hhcCCCCchHHHHHHHHHcccccCCHHHHHHHh
Confidence 99999999995 999999999 99999999755443 22233 3899999999
Q ss_pred hhccCCC----CeEEEEE
Q 029806 170 TTCLAAG----TSFSDII 183 (187)
Q Consensus 170 GR~~r~~----g~~i~~v 183 (187)
||+||.+ |.++.++
T Consensus 533 GRAGRp~yHdrGkVyllv 550 (830)
T COG1202 533 GRAGRPDYHDRGKVYLLV 550 (830)
T ss_pred cccCCCCcccCceEEEEe
Confidence 9998874 7776654
No 82
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.51 E-value=1.2e-13 Score=134.29 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=87.3
Q ss_pred CCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCCh---hhHHHHHHHHHccCCceEEEEeccCCHHHHH
Q 029806 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSR---DELDAVCSAVSNLADISFSSLHSDLAETERT 94 (187)
Q Consensus 18 ~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~---~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~ 94 (187)
...++.|.|+.+.. +...|.++++.+ +.++||||+++ +.+++++..|.+.| +++..+||+|+.
T Consensus 300 ~~r~I~~~~~~~~~---~~~~L~~ll~~l------~~~~IVFv~t~~~~~~a~~l~~~L~~~g-~~a~~lhg~~~~---- 365 (1171)
T TIGR01054 300 TLRNVVDVYVEDED---LKETLLEIVKKL------GTGGIVYVSIDYGKEKAEEIAEFLENHG-VKAVAYHATKPK---- 365 (1171)
T ss_pred cccceEEEEEeccc---HHHHHHHHHHHc------CCCEEEEEeccccHHHHHHHHHHHHhCC-ceEEEEeCCCCH----
Confidence 45678888876543 345677777762 25899999999 99999999999988 699999999973
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEe----cCCCCcCcCCCCCCC-CCEEEEecCCCC
Q 029806 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVT----DACLPLLSSGESAIS-ARVLINYELPTK 161 (187)
Q Consensus 95 ~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~T----d~~~~~~~rGlDi~~-v~~VI~yd~P~~ 161 (187)
.++++|++|+ .++||+| |+ ++||||+|+ |++|||||+|..
T Consensus 366 ~~l~~Fr~G~-----------------------~~vLVata~~tdv----~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 366 EDYEKFAEGE-----------------------IDVLIGVASYYGT----LVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHHHHHHcCC-----------------------CCEEEEeccccCc----ccccCCCCccccEEEEECCCCE
Confidence 6899999995 9999995 89 999999999 899999999974
No 83
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.51 E-value=2.9e-13 Score=129.56 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
.|+..|.+++..+. ..+.++||||.....++.|.++|...| +....++|+++..+|..++++|.+..
T Consensus 471 gKl~lLdkLL~~Lk---~~g~KVLIFSQft~~LdiLed~L~~~g-~~y~rIdGsts~~eRq~~Id~Fn~~~--------- 537 (1033)
T PLN03142 471 GKMVLLDKLLPKLK---ERDSRVLIFSQMTRLLDILEDYLMYRG-YQYCRIDGNTGGEDRDASIDAFNKPG--------- 537 (1033)
T ss_pred hHHHHHHHHHHHHH---hcCCeEEeehhHHHHHHHHHHHHHHcC-CcEEEECCCCCHHHHHHHHHHhcccc---------
Confidence 39999999998854 356899999999999999999999888 69999999999999999999998742
Q ss_pred cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC
Q 029806 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 175 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~ 175 (187)
.....+|++|.+ ++.||+++.+++||+||+|+++..+.|++||+-|-
T Consensus 538 -----------s~~~VfLLSTrA----GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRI 584 (1033)
T PLN03142 538 -----------SEKFVFLLSTRA----GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRI 584 (1033)
T ss_pred -----------CCceEEEEeccc----cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhc
Confidence 123578999999 99999999999999999999999999999999333
No 84
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.47 E-value=9.2e-13 Score=116.94 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
|+..+..++... ....+++|||.++..++.++..|...+ + +..++|+.+..+|.+++++|+.|+
T Consensus 269 ~~~~~~~~~~~~----~~~~~~lif~~~~~~a~~i~~~~~~~~-~-~~~it~~t~~~eR~~il~~fr~g~---------- 332 (442)
T COG1061 269 KIAAVRGLLLKH----ARGDKTLIFASDVEHAYEIAKLFLAPG-I-VEAITGETPKEEREAILERFRTGG---------- 332 (442)
T ss_pred HHHHHHHHHHHh----cCCCcEEEEeccHHHHHHHHHHhcCCC-c-eEEEECCCCHHHHHHHHHHHHcCC----------
Confidence 556666666551 135799999999999999999998877 5 889999999999999999999984
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccC
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 174 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r 174 (187)
.++|+++.+ +.+|+|+|+++++|......+...|+||+||..|
T Consensus 333 -------------~~~lv~~~v----l~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 333 -------------IKVLVTVKV----LDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred -------------CCEEEEeee----ccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999 9999999999999999999999999999999966
No 85
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.47 E-value=1e-13 Score=120.30 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=95.0
Q ss_pred CcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEE
Q 029806 54 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV 133 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~ 133 (187)
+--||||.|+..++.++-.|...| |.+..+|.++...||.++.+.|-+++ ..|+++
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~G-i~A~AYHAGLK~~ERTeVQe~WM~~~-----------------------~PvI~A 311 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAG-IPAMAYHAGLKKKERTEVQEKWMNNE-----------------------IPVIAA 311 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcC-cchHHHhcccccchhHHHHHHHhcCC-----------------------CCEEEE
Confidence 678999999999999999999999 99999999999999999999999985 999999
Q ss_pred ecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCeEEE
Q 029806 134 TDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSD 181 (187)
Q Consensus 134 Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~~i~ 181 (187)
|.- +.+|+|-|+|+.||||++|.+...|.|..||+||.+-..+|
T Consensus 312 T~S----FGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyC 355 (641)
T KOG0352|consen 312 TVS----FGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYC 355 (641)
T ss_pred Eec----cccccCCcceeEEEecCchhhhHHHHHhccccccCCCccce
Confidence 999 99999999999999999999999999999999888776665
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.47 E-value=6.7e-13 Score=125.70 Aligned_cols=98 Identities=14% Similarity=0.308 Sum_probs=81.2
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccC--CceEEEEeccCCHHHH----HHHHHHH-hcccccccccccccCCCCCcCCCC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETER----TLILEEF-RHTAMKWNQKVTEQSGDESETGKD 124 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~--~i~~~~lhg~~~~~eR----~~~l~~F-r~~~~~~~~~~~~~~~~~~~~~~~ 124 (187)
.+++++|||||++.++++++.|++.+ ...+..+||.++..+| .++++.| +++.
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~-------------------- 618 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGK-------------------- 618 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCC--------------------
Confidence 36789999999999999999998753 2479999999999999 4577888 4431
Q ss_pred CCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 125 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 125 ~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
..+..|||+|++ +++|+|+ +++++|....| .+.|+||+||++|.+
T Consensus 619 r~~~~ILVaTQV----iE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~ 663 (878)
T PRK09694 619 RNQGRILVATQV----VEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHH 663 (878)
T ss_pred cCCCeEEEECcc----hhheeec-CCCeEEECCCC--HHHHHHHHhccCCCC
Confidence 012579999999 9999999 68999998888 689999999996653
No 87
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.44 E-value=1.5e-12 Score=124.06 Aligned_cols=150 Identities=14% Similarity=0.171 Sum_probs=127.8
Q ss_pred CCCCCCccCCCCCCCCCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCc
Q 029806 1 MAIDGVESPCPPCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADI 79 (187)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i 79 (187)
||..|+..-+....+|..+-.|+.|+...++.--|-.+++++.+. +|+...+|.+++++.++..|+.. ++.
T Consensus 759 Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~Rg--------GQvfYv~NrV~~Ie~~~~~L~~LVPEa 830 (1139)
T COG1197 759 MSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRG--------GQVFYVHNRVESIEKKAERLRELVPEA 830 (1139)
T ss_pred HHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcC--------CEEEEEecchhhHHHHHHHHHHhCCce
Confidence 777888887788888888888888877776665455555555544 99999999999999999999876 556
Q ss_pred eEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCC
Q 029806 80 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP 159 (187)
Q Consensus 80 ~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P 159 (187)
++...||.|++.+-.+++..|-+|+ .+|||||.+ .+.|||+|++|.+|.-+--
T Consensus 831 rI~vaHGQM~e~eLE~vM~~F~~g~-----------------------~dVLv~TTI----IEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 831 RIAVAHGQMRERELEEVMLDFYNGE-----------------------YDVLVCTTI----IETGIDIPNANTIIIERAD 883 (1139)
T ss_pred EEEEeecCCCHHHHHHHHHHHHcCC-----------------------CCEEEEeee----eecCcCCCCCceEEEeccc
Confidence 8999999999999999999999995 999999999 9999999999998866543
Q ss_pred C-ChhHHHHhhhhccCCCCeEEEEEEe
Q 029806 160 T-KKETYIRRMTTCLAAGTSFSDIILL 185 (187)
Q Consensus 160 ~-~~~~y~~R~GR~~r~~g~~i~~v~~ 185 (187)
. ......|--||+||+.-.++++++.
T Consensus 884 ~fGLsQLyQLRGRVGRS~~~AYAYfl~ 910 (1139)
T COG1197 884 KFGLAQLYQLRGRVGRSNKQAYAYFLY 910 (1139)
T ss_pred cccHHHHHHhccccCCccceEEEEEee
Confidence 3 4678888889999999999998864
No 88
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.43 E-value=4.5e-14 Score=115.78 Aligned_cols=98 Identities=19% Similarity=0.357 Sum_probs=83.1
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
..+++|+|+...+.+ |...|.+||..+.+ .+++||+.+..++.
T Consensus 255 LHGLqQ~YvkLke~e-KNrkl~dLLd~LeF-----NQVvIFvKsv~Rl~------------------------------- 297 (387)
T KOG0329|consen 255 LHGLQQYYVKLKENE-KNRKLNDLLDVLEF-----NQVVIFVKSVQRLS------------------------------- 297 (387)
T ss_pred hhhHHHHHHhhhhhh-hhhhhhhhhhhhhh-----cceeEeeehhhhhh-------------------------------
Confidence 457899999999888 99999999998666 89999998876510
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC--C
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--G 176 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~--~ 176 (187)
|. .+ +|+|++ +.||+|+..|+.|+|||+|.+.++|+||+||+||- .
T Consensus 298 -f~--------------------------kr-~vat~l----fgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtk 345 (387)
T KOG0329|consen 298 -FQ--------------------------KR-LVATDL----FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 345 (387)
T ss_pred -hh--------------------------hh-hHHhhh----hccccCcccceeeeccCCCCCchHHHHHhhhhhccccc
Confidence 31 22 899999 99999999999999999999999999999999665 5
Q ss_pred CeEEEEEEe
Q 029806 177 TSFSDIILL 185 (187)
Q Consensus 177 g~~i~~v~~ 185 (187)
|.+|+|++.
T Consensus 346 glaitfvs~ 354 (387)
T KOG0329|consen 346 GLAITFVSD 354 (387)
T ss_pred cceeehhcc
Confidence 888888753
No 89
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.41 E-value=1.7e-12 Score=115.24 Aligned_cols=128 Identities=13% Similarity=0.157 Sum_probs=107.3
Q ss_pred EEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
-+.+.+.....+-|..-++.. ...+.+++|-+=|+++++.|.++|...| |++..+|+++..-||.++++..|.|+
T Consensus 422 ~ievRp~~~QvdDL~~EI~~r---~~~~eRvLVTtLTKkmAEdLT~Yl~e~g-ikv~YlHSdidTlER~eIirdLR~G~- 496 (663)
T COG0556 422 EIEVRPTKGQVDDLLSEIRKR---VAKNERVLVTTLTKKMAEDLTEYLKELG-IKVRYLHSDIDTLERVEIIRDLRLGE- 496 (663)
T ss_pred ceeeecCCCcHHHHHHHHHHH---HhcCCeEEEEeehHHHHHHHHHHHHhcC-ceEEeeeccchHHHHHHHHHHHhcCC-
Confidence 344444333444444433331 2345899999999999999999999999 89999999999999999999999995
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEec-----CCCChhHHHHhhhhccCC-CCeE
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-----LPTKKETYIRRMTTCLAA-GTSF 179 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd-----~P~~~~~y~~R~GR~~r~-~g~~ 179 (187)
.++||.-++ +.+|||+|.|++|..+| +.+|..+.+|-|||++|+ .|.+
T Consensus 497 ----------------------~DvLVGINL----LREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gkv 550 (663)
T COG0556 497 ----------------------FDVLVGINL----LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKV 550 (663)
T ss_pred ----------------------ccEEEeehh----hhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeE
Confidence 999999999 99999999999999887 678999999999999888 5999
Q ss_pred EEEEE
Q 029806 180 SDIIL 184 (187)
Q Consensus 180 i~~v~ 184 (187)
|.+.-
T Consensus 551 IlYAD 555 (663)
T COG0556 551 ILYAD 555 (663)
T ss_pred EEEch
Confidence 88753
No 90
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.32 E-value=2.7e-11 Score=110.40 Aligned_cols=136 Identities=13% Similarity=0.198 Sum_probs=100.6
Q ss_pred CCCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhh--------HHHHHHHHHcc-CCceEEEEe
Q 029806 15 SPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDE--------LDAVCSAVSNL-ADISFSSLH 85 (187)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~--------~~~l~~~L~~~-~~i~~~~lh 85 (187)
.|.-+..|..+++.... +-.++..+-+++ ..+.|+.+.|+-+++ ++.++..|+.. ++.++..+|
T Consensus 442 lP~GRkpI~T~~i~~~~---~~~v~e~i~~ei----~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~H 514 (677)
T COG1200 442 LPPGRKPITTVVIPHER---RPEVYERIREEI----AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVH 514 (677)
T ss_pred CCCCCCceEEEEecccc---HHHHHHHHHHHH----HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEe
Confidence 34445556666554432 333444444443 247899999986654 44566666532 346799999
Q ss_pred ccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCC-hhH
Q 029806 86 SDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK-KET 164 (187)
Q Consensus 86 g~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~-~~~ 164 (187)
|.|+..|..+++++|+.|+ .+|||||.+ .+-|+|+|+++++|.++.-+= ...
T Consensus 515 Grm~~~eKd~vM~~Fk~~e-----------------------~~ILVaTTV----IEVGVdVPnATvMVIe~AERFGLaQ 567 (677)
T COG1200 515 GRMKPAEKDAVMEAFKEGE-----------------------IDILVATTV----IEVGVDVPNATVMVIENAERFGLAQ 567 (677)
T ss_pred cCCChHHHHHHHHHHHcCC-----------------------CcEEEEeeE----EEecccCCCCeEEEEechhhhhHHH
Confidence 9999999999999999996 999999999 999999999999999996653 444
Q ss_pred HHHhhhhccCCCCeEEEEEE
Q 029806 165 YIRRMTTCLAAGTSFSDIIL 184 (187)
Q Consensus 165 y~~R~GR~~r~~g~~i~~v~ 184 (187)
.-|=-||+||.+-.++|+++
T Consensus 568 LHQLRGRVGRG~~qSyC~Ll 587 (677)
T COG1200 568 LHQLRGRVGRGDLQSYCVLL 587 (677)
T ss_pred HHHhccccCCCCcceEEEEE
Confidence 45555999999888888875
No 91
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.28 E-value=1.7e-11 Score=105.51 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccC
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~ 115 (187)
-+.+.++.+.+.. .-.+...||||-+...++.++..|...| |++..+|..|.+++|..+-+.|..|+
T Consensus 301 dd~~edi~k~i~~-~f~gqsgiiyc~sq~d~ekva~alkn~g-i~a~~yha~lep~dks~~hq~w~a~e----------- 367 (695)
T KOG0353|consen 301 DDCIEDIAKLIKG-DFAGQSGIIYCFSQKDCEKVAKALKNHG-IHAGAYHANLEPEDKSGAHQGWIAGE----------- 367 (695)
T ss_pred HHHHHHHHHHhcc-ccCCCcceEEEeccccHHHHHHHHHhcC-ccccccccccCccccccccccccccc-----------
Confidence 4445555544332 5567889999999999999999999999 99999999999999999999999985
Q ss_pred CCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHH
Q 029806 116 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIR 167 (187)
Q Consensus 116 ~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~ 167 (187)
+.++|+|-+ +..|||-|+|+.|||-.+|.+.+.|.|
T Consensus 368 ------------iqvivatva----fgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 368 ------------IQVIVATVA----FGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred ------------eEEEEEEee----ecccCCCCCeeEEEecccchhHHHHHH
Confidence 999999999 999999999999999999999999999
No 92
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.26 E-value=4.6e-11 Score=115.94 Aligned_cols=95 Identities=11% Similarity=0.167 Sum_probs=80.9
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc-----CC---ceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCC
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL-----AD---ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 124 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~-----~~---i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~ 124 (187)
.+|+||||.++..++.+.+.|.+. ++ -.+..+||+++ ++.+++++|+++.
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~-------------------- 755 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER-------------------- 755 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC--------------------
Confidence 479999999999999998887642 11 14567999985 5678999999873
Q ss_pred CCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC
Q 029806 125 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 175 (187)
Q Consensus 125 ~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~ 175 (187)
..+|+|++++ +.+|+|+|.|.+||.++.+.|...|+|++||+.|.
T Consensus 756 --~p~IlVsvdm----L~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 756 --LPNIVVTVDL----LTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred --CCeEEEEecc----cccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 2379999999 99999999999999999999999999999999664
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=1.3e-10 Score=109.17 Aligned_cols=122 Identities=15% Similarity=0.131 Sum_probs=103.8
Q ss_pred cCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccc
Q 029806 30 DRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 109 (187)
Q Consensus 30 ~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~ 109 (187)
...+ |...+.+.+.... ..+.++||||+|+..++++++.|.+.| +++..||+. ..+|...+..|+.+
T Consensus 411 t~~~-K~~aI~~~I~~~~---~~grpVLIft~Si~~se~Ls~~L~~~g-i~~~vLnak--q~eREa~Iia~Ag~------ 477 (830)
T PRK12904 411 TEKE-KFDAVVEDIKERH---KKGQPVLVGTVSIEKSELLSKLLKKAG-IPHNVLNAK--NHEREAEIIAQAGR------ 477 (830)
T ss_pred CHHH-HHHHHHHHHHHHH---hcCCCEEEEeCcHHHHHHHHHHHHHCC-CceEeccCc--hHHHHHHHHHhcCC------
Confidence 3344 8999999886622 346799999999999999999999998 899999996 78999999999998
Q ss_pred cccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCC--------------------------------------C
Q 029806 110 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--------------------------------------R 151 (187)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v--------------------------------------~ 151 (187)
+..|+|||++ ++||+|++== =
T Consensus 478 -----------------~g~VtIATNm----AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL 536 (830)
T PRK12904 478 -----------------PGAVTIATNM----AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGL 536 (830)
T ss_pred -----------------CceEEEeccc----ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCC
Confidence 4999999999 9999999753 1
Q ss_pred EEEEecCCCChhHHHHhhhhccCCC--CeEEEEEEe
Q 029806 152 VLINYELPTKKETYIRRMTTCLAAG--TSFSDIILL 185 (187)
Q Consensus 152 ~VI~yd~P~~~~~y~~R~GR~~r~~--g~~i~~v~~ 185 (187)
|||--+.|.|..---|=.||+||.| |.+--|+++
T Consensus 537 hVigTerhesrRid~QlrGRagRQGdpGss~f~lSl 572 (830)
T PRK12904 537 HVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSL 572 (830)
T ss_pred EEEecccCchHHHHHHhhcccccCCCCCceeEEEEc
Confidence 7999999999999999999998775 666666654
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=3.9e-11 Score=108.24 Aligned_cols=90 Identities=12% Similarity=0.193 Sum_probs=71.7
Q ss_pred HHHHHHHHHcc-CCceEEEEeccCCHHHH--HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCc
Q 029806 66 LDAVCSAVSNL-ADISFSSLHSDLAETER--TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLS 142 (187)
Q Consensus 66 ~~~l~~~L~~~-~~i~~~~lhg~~~~~eR--~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~ 142 (187)
.+++.+.|.+. +..++..+|++++..++ ..++++|++|+ .+|||+|++ ++
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~-----------------------~~ILVgT~~----i~ 323 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGK-----------------------ADILIGTQM----IA 323 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCC-----------------------CCEEEeCcc----cc
Confidence 47777777765 33689999999987766 89999999985 999999999 99
Q ss_pred CCCCCCCCCEE--EEecC----CC------ChhHHHHhhhhccCCCCeEEEE
Q 029806 143 SGESAISARVL--INYEL----PT------KKETYIRRMTTCLAAGTSFSDI 182 (187)
Q Consensus 143 rGlDi~~v~~V--I~yd~----P~------~~~~y~~R~GR~~r~~g~~i~~ 182 (187)
+|+|+|+|++| +++|. |. ....|.|++||+||.+..+..+
T Consensus 324 kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 324 KGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred cCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEE
Confidence 99999999987 47774 42 2577899999998765433333
No 95
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.23 E-value=8.4e-11 Score=99.97 Aligned_cols=106 Identities=19% Similarity=0.321 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHH-HccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCC
Q 029806 38 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAV-SNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 116 (187)
Q Consensus 38 ~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L-~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~ 116 (187)
.|..+++. . ...+.+++||++++...+.++..| .+.+...+..+|+. .+.|.+.+++||+|+
T Consensus 293 kl~~~lek-q--~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~------------ 355 (441)
T COG4098 293 KLKRWLEK-Q--RKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGK------------ 355 (441)
T ss_pred HHHHHHHH-H--HhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCc------------
Confidence 45566654 1 356789999999999999999999 45566678899987 578999999999995
Q ss_pred CCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCE-EEEecCC-CChhHHHHhhhhccCC
Q 029806 117 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARV-LINYELP-TKKETYIRRMTTCLAA 175 (187)
Q Consensus 117 ~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~-VI~yd~P-~~~~~y~~R~GR~~r~ 175 (187)
.++||+|.+ ++||+.+|+|++ |+.-+-+ -+.++.+|-+||+||+
T Consensus 356 -----------~~lLiTTTI----LERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs 401 (441)
T COG4098 356 -----------ITLLITTTI----LERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRS 401 (441)
T ss_pred -----------eEEEEEeeh----hhcccccccceEEEecCCcccccHHHHHHHhhhccCC
Confidence 999999999 999999999998 5555544 3789999999999887
No 96
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.18 E-value=1.8e-10 Score=107.26 Aligned_cols=92 Identities=11% Similarity=0.122 Sum_probs=72.8
Q ss_pred hHHHHHHHHHcc-CCceEEEEeccCC--HHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcC
Q 029806 65 ELDAVCSAVSNL-ADISFSSLHSDLA--ETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLL 141 (187)
Q Consensus 65 ~~~~l~~~L~~~-~~i~~~~lhg~~~--~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~ 141 (187)
-++++.+.|.+. ++.++..+|+++. .++|..++++|++|+ .+|||+|++ +
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~-----------------------~~ILVgT~~----i 490 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGE-----------------------ADILIGTQM----L 490 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCC-----------------------CCEEEEChh----h
Confidence 346777777765 3368999999986 567999999999985 999999999 9
Q ss_pred cCCCCCCCCCEEE--EecCCCC----------hhHHHHhhhhccCCCCeEEEEE
Q 029806 142 SSGESAISARVLI--NYELPTK----------KETYIRRMTTCLAAGTSFSDII 183 (187)
Q Consensus 142 ~rGlDi~~v~~VI--~yd~P~~----------~~~y~~R~GR~~r~~g~~i~~v 183 (187)
++|+|+|+|++|+ ++|.+-+ ...|.|++||+||.+..+..++
T Consensus 491 akG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 491 AKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred ccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 9999999999985 5555533 3679999999988654444443
No 97
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=4.3e-10 Score=105.99 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=103.5
Q ss_pred EccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccc
Q 029806 28 AVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKW 107 (187)
Q Consensus 28 ~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~ 107 (187)
+....+ |...+.+-+.... ..+.++||||+|+..++++++.|.+.| |++..||+.+.++||..+.+.|+.|
T Consensus 423 ~~t~~~-k~~av~~~i~~~~---~~g~PVLVgt~Sie~sE~ls~~L~~~g-i~h~vLnak~~q~Ea~iia~Ag~~G---- 493 (896)
T PRK13104 423 YLTQAD-KFQAIIEDVRECG---VRKQPVLVGTVSIEASEFLSQLLKKEN-IKHQVLNAKFHEKEAQIIAEAGRPG---- 493 (896)
T ss_pred EcCHHH-HHHHHHHHHHHHH---hCCCCEEEEeCcHHHHHHHHHHHHHcC-CCeEeecCCCChHHHHHHHhCCCCC----
Confidence 333444 8888888776632 467899999999999999999999998 8999999999999999999999996
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCC-------------------------------------
Q 029806 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA------------------------------------- 150 (187)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v------------------------------------- 150 (187)
.|+|||++ ++||+|+.=-
T Consensus 494 ---------------------~VtIATNm----AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 548 (896)
T PRK13104 494 ---------------------AVTIATNM----AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAG 548 (896)
T ss_pred ---------------------cEEEeccC----ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcC
Confidence 39999999 9999998621
Q ss_pred -CEEEEecCCCChhHHHHhhhhccCCC--CeEEEEEEe
Q 029806 151 -RVLINYELPTKKETYIRRMTTCLAAG--TSFSDIILL 185 (187)
Q Consensus 151 -~~VI~yd~P~~~~~y~~R~GR~~r~~--g~~i~~v~~ 185 (187)
=|||--+-+.|..-=-|=.||+||.| |.+--|+++
T Consensus 549 GL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSl 586 (896)
T PRK13104 549 GLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 586 (896)
T ss_pred CCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEc
Confidence 17888888998888888889998775 666666654
No 98
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.12 E-value=4.2e-10 Score=106.86 Aligned_cols=140 Identities=20% Similarity=0.223 Sum_probs=109.5
Q ss_pred CCCCCCCCceEEEEcc------C--cchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHH----HHHHccC---Cc
Q 029806 15 SPSHFSQPRHFYVAVD------R--LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVC----SAVSNLA---DI 79 (187)
Q Consensus 15 ~~~~~~~i~~~~~~~~------~--~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~----~~L~~~~---~i 79 (187)
....+...+++...-+ . ...+...+..+..... ..+-++|+|+.+++.++.+. ..+...+ ..
T Consensus 263 ~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~---~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~ 339 (851)
T COG1205 263 EDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLV---RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLD 339 (851)
T ss_pred CCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHH---HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhh
Confidence 3445556666655554 0 1226666666666533 34689999999999999886 3333323 13
Q ss_pred eEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCC
Q 029806 80 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP 159 (187)
Q Consensus 80 ~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P 159 (187)
.+...+++|..++|..+.+.|+.|+ ..++++|++ +.-|+|+.+++.||++..|
T Consensus 340 ~v~~~~~~~~~~er~~ie~~~~~g~-----------------------~~~~~st~A----lelgidiG~ldavi~~g~P 392 (851)
T COG1205 340 AVSTYRAGLHREERRRIEAEFKEGE-----------------------LLGVIATNA----LELGIDIGSLDAVIAYGYP 392 (851)
T ss_pred heeeccccCCHHHHHHHHHHHhcCC-----------------------ccEEecchh----hhhceeehhhhhHhhcCCC
Confidence 6888999999999999999999995 999999999 9999999999999999999
Q ss_pred C-ChhHHHHhhhhccCCCCeEEEEEE
Q 029806 160 T-KKETYIRRMTTCLAAGTSFSDIIL 184 (187)
Q Consensus 160 ~-~~~~y~~R~GR~~r~~g~~i~~v~ 184 (187)
. +..++.||.||+||++..++.++.
T Consensus 393 ~~s~~~~~Q~~GRaGR~~~~~l~~~v 418 (851)
T COG1205 393 GVSVLSFRQRAGRAGRRGQESLVLVV 418 (851)
T ss_pred CchHHHHHHhhhhccCCCCCceEEEE
Confidence 9 999999999999999866665554
No 99
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=1.3e-09 Score=102.72 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
.|...+.+-+..+. ..+.++||||+|+..+++++..|...| +++..||+.++++||..+.+.|+.|
T Consensus 433 ~K~~Aii~ei~~~~---~~GrpVLV~t~sv~~se~ls~~L~~~g-i~~~vLnak~~~~Ea~ii~~Ag~~G---------- 498 (908)
T PRK13107 433 EKYQAIIKDIKDCR---ERGQPVLVGTVSIEQSELLARLMVKEK-IPHEVLNAKFHEREAEIVAQAGRTG---------- 498 (908)
T ss_pred HHHHHHHHHHHHHH---HcCCCEEEEeCcHHHHHHHHHHHHHCC-CCeEeccCcccHHHHHHHHhCCCCC----------
Confidence 38888887777633 357899999999999999999999998 7999999999999999999999997
Q ss_pred cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCC-------------------------------------CEEEEe
Q 029806 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA-------------------------------------RVLINY 156 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v-------------------------------------~~VI~y 156 (187)
. |+|||++ ++||+|+.=- =|||--
T Consensus 499 --------------~-VtIATnm----AGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgT 559 (908)
T PRK13107 499 --------------A-VTIATNM----AGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGT 559 (908)
T ss_pred --------------c-EEEecCC----cCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEec
Confidence 2 9999999 9999998621 178988
Q ss_pred cCCCChhHHHHhhhhccCCC--CeEEEEEEe
Q 029806 157 ELPTKKETYIRRMTTCLAAG--TSFSDIILL 185 (187)
Q Consensus 157 d~P~~~~~y~~R~GR~~r~~--g~~i~~v~~ 185 (187)
+.+.|..-=-|=.||+||.| |.+--|+++
T Consensus 560 erheSrRID~QLrGRaGRQGDPGss~f~lSl 590 (908)
T PRK13107 560 ERHESRRIDNQLRGRAGRQGDAGSSRFYLSM 590 (908)
T ss_pred ccCchHHHHhhhhcccccCCCCCceeEEEEe
Confidence 99999888889889998775 766666664
No 100
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.92 E-value=1.2e-08 Score=96.05 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=83.3
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHcc------------------CC------------------ceEEEEeccCCHHHHH
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNL------------------AD------------------ISFSSLHSDLAETERT 94 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~------------------~~------------------i~~~~lhg~~~~~eR~ 94 (187)
..+++++|||++++.+...+..|+.. .. .-+.+.|.+|+.+.|.
T Consensus 251 ~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~ 330 (766)
T COG1204 251 AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQ 330 (766)
T ss_pred hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHH
Confidence 34789999999999999998888731 00 1256789999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEE----Eec-----CCCChhHH
Q 029806 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYE-----LPTKKETY 165 (187)
Q Consensus 95 ~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI----~yd-----~P~~~~~y 165 (187)
-+-+.|++| +++||+||.. ++.|++.|.-.+|| -|| .+-++-+|
T Consensus 331 ~vE~~Fr~g-----------------------~ikVlv~TpT----LA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv 383 (766)
T COG1204 331 LVEDAFRKG-----------------------KIKVLVSTPT----LAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDV 383 (766)
T ss_pred HHHHHHhcC-----------------------CceEEEechH----HhhhcCCcceEEEEeeeEEEcCCCCeEECchhhH
Confidence 999999999 5999999999 99999999766655 566 56689999
Q ss_pred HHhhhhccCCC
Q 029806 166 IRRMTTCLAAG 176 (187)
Q Consensus 166 ~~R~GR~~r~~ 176 (187)
+|++||+||.+
T Consensus 384 ~QM~GRAGRPg 394 (766)
T COG1204 384 LQMAGRAGRPG 394 (766)
T ss_pred hhccCcCCCCC
Confidence 99999998884
No 101
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.80 E-value=3.3e-08 Score=93.47 Aligned_cols=138 Identities=13% Similarity=0.171 Sum_probs=105.4
Q ss_pred CCCCCCCCceEEEEccCcch-HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHc--c-CCceEEEEeccCCH
Q 029806 15 SPSHFSQPRHFYVAVDRLQF-KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN--L-ADISFSSLHSDLAE 90 (187)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~~-Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~--~-~~i~~~~lhg~~~~ 90 (187)
.+...-.+.-+|......+. -...+...++.... ...+.++||.+-.+.++..+++|.+ . ..+.+..|||.++.
T Consensus 222 i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~--~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~ 299 (845)
T COG1643 222 IEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLR--EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSA 299 (845)
T ss_pred ecCCccceEEEecCCCCcchhHHHHHHHHHHHhcc--CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCH
Confidence 33444556666744444443 45566666665333 4578999999999999999999987 3 23789999999999
Q ss_pred HHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecC------------
Q 029806 91 TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------ 158 (187)
Q Consensus 91 ~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~------------ 158 (187)
+++.++++---.+ +.+|+++|++ ++.+|.+++|.+||.-++
T Consensus 300 ~eQ~rvF~p~~~~-----------------------~RKVVlATNI----AETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 300 EEQVRVFEPAPGG-----------------------KRKVVLATNI----AETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHhhcCCCCCC-----------------------cceEEEEccc----cccceeeCCeEEEecCCcccccccccccCc
Confidence 9999877665555 4679999999 999999999999996542
Q ss_pred ------CCChhHHHHhhhhccCC-CCeEEE
Q 029806 159 ------PTKKETYIRRMTTCLAA-GTSFSD 181 (187)
Q Consensus 159 ------P~~~~~y~~R~GR~~r~-~g~~i~ 181 (187)
|-|..+--||.||+||- .|.|+=
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~pGicyR 382 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTGPGICYR 382 (845)
T ss_pred eeeeEEEechhhhhhhccccccCCCceEEE
Confidence 45788999999999887 477664
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.76 E-value=3.4e-08 Score=92.82 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=81.3
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeE
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 130 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 130 (187)
..+++++|.|||+..+.+++..|+..+. ++..+||.+....|.+.+++.++-- ......|
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-~v~LlHSRf~~~dR~~ke~~l~~~~-------------------~~~~~~I 497 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGP-KVLLLHSRFTLKDREEKERELKKLF-------------------KQNEGFI 497 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCC-CEEEEecccchhhHHHHHHHHHHHH-------------------hccCCeE
Confidence 4579999999999999999999999884 7999999999999999999876420 0014889
Q ss_pred EEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 131 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 131 Lv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
+|+|.+ .+-|+|+. .+++| -=+...++.+||+||+.|.+
T Consensus 498 vVaTQV----IEagvDid-fd~mI--Te~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 498 VVATQV----IEAGVDID-FDVLI--TELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred EEEeeE----EEEEeccc-cCeee--ecCCCHHHHHHHHHHHhhcc
Confidence 999999 99999965 34333 34667899999999996665
No 103
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.70 E-value=1.3e-07 Score=90.59 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=96.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccc
Q 029806 32 LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (187)
Q Consensus 32 ~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~ 111 (187)
+--|++.|.-||+++. ..+.+++||+.-.++.+-|...|...|+ .-+.|.|....++|+..+++|..+.
T Consensus 1258 DcGKLQtLAiLLqQLk---~eghRvLIfTQMtkmLDVLeqFLnyHgy-lY~RLDg~t~vEqRQaLmerFNaD~------- 1326 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLK---SEGHRVLIFTQMTKMLDVLEQFLNYHGY-LYVRLDGNTSVEQRQALMERFNADR------- 1326 (1958)
T ss_pred ccchHHHHHHHHHHHH---hcCceEEehhHHHHHHHHHHHHHhhcce-EEEEecCCccHHHHHHHHHHhcCCC-------
Confidence 3448888888888743 3568999999999999999999999995 9999999999999999999999873
Q ss_pred cccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCC------hhHHHHhhhhc
Q 029806 112 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK------KETYIRRMTTC 172 (187)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~------~~~y~~R~GR~ 172 (187)
.-...+++|.- ..-||++.+++.||.||--|+ ..+..||||+|
T Consensus 1327 --------------RIfcfILSTrS----ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt 1375 (1958)
T KOG0391|consen 1327 --------------RIFCFILSTRS----GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 1375 (1958)
T ss_pred --------------ceEEEEEeccC----CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc
Confidence 22456788888 999999999999999997665 67899999997
No 104
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.66 E-value=3.5e-07 Score=85.48 Aligned_cols=130 Identities=14% Similarity=0.096 Sum_probs=97.2
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
+...++........- |+..|..++..+.. ....++.+..|.+.+.+.+.+..+-+|+ .++.|||.|+..+|+.+++
T Consensus 564 ~~~~~~~~~~~~ks~-kl~~L~~ll~~~~e--k~~~~~v~Isny~~tldl~e~~~~~~g~-~~~rLdG~~~~~qRq~~vd 639 (776)
T KOG0390|consen 564 PGKLKLDAGDGSKSG-KLLVLVFLLEVIRE--KLLVKSVLISNYTQTLDLFEQLCRWRGY-EVLRLDGKTSIKQRQKLVD 639 (776)
T ss_pred ccccccccccchhhh-HHHHHHHHHHHHhh--hcceEEEEeccHHHHHHHHHHHHhhcCc-eEEEEcCCCchHHHHHHHH
Confidence 333444444433334 77777777744222 3334555556666666666666666674 9999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
.|.+.. +...-.|.+|.+ .+.||++.+++.||.||+.|++..=.|-++|+-|.|
T Consensus 640 ~FN~p~--------------------~~~~vfLlSsKA----gg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdG 693 (776)
T KOG0390|consen 640 TFNDPE--------------------SPSFVFLLSSKA----GGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDG 693 (776)
T ss_pred hccCCC--------------------CCceEEEEeccc----ccCceeecccceEEEeCCCCCchhHHHHHHHhccCC
Confidence 999874 123567888889 899999999999999999999999999999995554
No 105
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.65 E-value=3e-07 Score=85.23 Aligned_cols=117 Identities=16% Similarity=0.140 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHH-ccCCceEEEEeccCCHHHHHHHHHHHhccccccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS-NLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~-~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~ 112 (187)
-|+..|.++++. .. ..+.++++|..++.+.+-|...|. ..| +....+.|..+...|..++++|.+++
T Consensus 530 GKm~vl~~ll~~-W~--kqg~rvllFsqs~~mLdilE~fL~~~~~-ysylRmDGtT~~~~R~~lVd~Fne~~-------- 597 (923)
T KOG0387|consen 530 GKMKVLAKLLKD-WK--KQGDRVLLFSQSRQMLDILESFLRRAKG-YSYLRMDGTTPAALRQKLVDRFNEDE-------- 597 (923)
T ss_pred chHHHHHHHHHH-Hh--hCCCEEEEehhHHHHHHHHHHHHHhcCC-ceEEEecCCCccchhhHHHHhhcCCC--------
Confidence 389999998887 33 345799999999999999999998 566 69999999999999999999999875
Q ss_pred ccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc---cCCCCeE
Q 029806 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC---LAAGTSF 179 (187)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~---~r~~g~~ 179 (187)
.....|++|.+ .+-|+++..++-||.||+-|++++=.|---|+ |....++
T Consensus 598 -------------s~~VFLLTTrv----GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~ 650 (923)
T KOG0387|consen 598 -------------SIFVFLLTTRV----GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVV 650 (923)
T ss_pred -------------ceEEEEEEecc----cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceE
Confidence 23568999999 99999999999999999999998888855554 5444443
No 106
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.63 E-value=1.2e-07 Score=85.55 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----C-C--ceEEEEeccCCHHHHHHHHHHHhcccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----A-D--ISFSSLHSDLAETERTLILEEFRHTAMKW 107 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~-~--i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~ 107 (187)
|..-...++.++.. .+.++|-||.+++-++.+-...++. + . -.+..+.|+-..++|..+..+.-.|
T Consensus 510 ~i~E~s~~~~~~i~---~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G---- 582 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQ---HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG---- 582 (1034)
T ss_pred HHHHHHHHHHHHHH---cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC----
Confidence 44444444444222 3689999999999888766544332 1 0 1244567888889999888887777
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCeEEEEEE
Q 029806 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDIIL 184 (187)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~~i~~v~ 184 (187)
+..-+|+|++ ++-|||+...+.|++.++|.+...+.|+.||+||+......++.
T Consensus 583 -------------------~L~giIaTNA----LELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyv 636 (1034)
T KOG4150|consen 583 -------------------KLCGIIATNA----LELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYV 636 (1034)
T ss_pred -------------------eeeEEEecch----hhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEE
Confidence 4999999999 99999999999999999999999999999999999766655543
No 107
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.61 E-value=1.9e-07 Score=89.69 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
|+-+|-+||-.+ ...+.+|+||..-+...+-|+++|..+++ +.-.|.|.+..+-|++.+++|.+..
T Consensus 684 KlVLLDKLL~rL---k~~GHrVLIFSQMVRmLDIL~eYL~~r~y-pfQRLDGsvrgelRq~AIDhFnap~---------- 749 (1373)
T KOG0384|consen 684 KLVLLDKLLPRL---KEGGHRVLIFSQMVRMLDILAEYLSLRGY-PFQRLDGSVRGELRQQAIDHFNAPD---------- 749 (1373)
T ss_pred cEEeHHHHHHHH---hcCCceEEEhHHHHHHHHHHHHHHHHcCC-cceeccCCcchHHHHHHHHhccCCC----------
Confidence 444555666553 24568999999999999999999999995 9999999999999999999999863
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
+.....|+||.+ .+-||++..++.||.||--|++..=+|-.-||
T Consensus 750 ----------SddFvFLLSTRA----GGLGINLatADTVIIFDSDWNPQNDLQAqARa 793 (1373)
T KOG0384|consen 750 ----------SDDFVFLLSTRA----GGLGINLATADTVIIFDSDWNPQNDLQAQARA 793 (1373)
T ss_pred ----------CCceEEEEeccc----CcccccccccceEEEeCCCCCcchHHHHHHHH
Confidence 335899999999 99999999999999999999887777665565
No 108
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.60 E-value=4.4e-07 Score=84.03 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=98.7
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccc
Q 029806 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (187)
Q Consensus 31 ~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~ 110 (187)
+.- |+.+|-+||..+. ..+.+|+||..-....+-|.++..-++| ....|.|.++.++|...++.|....
T Consensus 469 nSG-Km~vLDkLL~~Lk---~~GhRVLIFSQmt~mLDILeDyc~~R~y-~ycRiDGSt~~eeR~~aI~~fn~~~------ 537 (971)
T KOG0385|consen 469 NSG-KMLVLDKLLPKLK---EQGHRVLIFSQMTRMLDILEDYCMLRGY-EYCRLDGSTSHEEREDAIEAFNAPP------ 537 (971)
T ss_pred cCc-ceehHHHHHHHHH---hCCCeEEEeHHHHHHHHHHHHHHHhcCc-eeEeecCCCCcHHHHHHHHhcCCCC------
Confidence 344 8999999998754 3578999999999999999999999995 9999999999999999999998863
Q ss_pred ccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 111 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
+.+.-.|++|.+ .+-||++..++.||.||--+++..=+|-.-||
T Consensus 538 --------------s~~FiFlLSTRA----GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 538 --------------SEKFIFLLSTRA----GGLGINLTAADTVILYDSDWNPQVDLQAMDRA 581 (971)
T ss_pred --------------cceEEEEEeccc----cccccccccccEEEEecCCCCchhhhHHHHHH
Confidence 225779999999 99999999999999999999988777766666
No 109
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.58 E-value=5.7e-07 Score=83.45 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
.|.+.|..+|..+.. .+.+++||.......+-|...|..++ +....|.|......|+.++++|...+
T Consensus 761 gK~r~L~~LLp~~k~---~G~RVLiFSQFTqmLDILE~~L~~l~-~~ylRLDGsTqV~~RQ~lId~Fn~d~--------- 827 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKK---KGDRVLIFSQFTQMLDILEVVLDTLG-YKYLRLDGSTQVNDRQDLIDEFNTDK--------- 827 (941)
T ss_pred hhHhHHHHHHHHHhh---cCCEEEEeeHHHHHHHHHHHHHHhcC-ceEEeecCCccchHHHHHHHhhccCC---------
Confidence 388999999987543 45899999999999999999999999 59999999999999999999998874
Q ss_pred cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCC------ChhHHHHhhhhc
Q 029806 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTC 172 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~------~~~~y~~R~GR~ 172 (187)
.-...|++|.+ .+.||++..+++||.||+-- .+++-.||+|.+
T Consensus 828 ------------difVFLLSTKA----GG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQt 876 (941)
T KOG0389|consen 828 ------------DIFVFLLSTKA----GGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQT 876 (941)
T ss_pred ------------ceEEEEEeecc----CcceecccccceEEEeecCCCCcccchhHHHHHhhCCc
Confidence 23668999999 99999999999999999743 478888888864
No 110
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.52 E-value=1.7e-06 Score=81.65 Aligned_cols=122 Identities=12% Similarity=0.182 Sum_probs=94.6
Q ss_pred cCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccc
Q 029806 30 DRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 109 (187)
Q Consensus 30 ~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~ 109 (187)
.... |...+.+-+.... ..+.++||.|.++...+.++..|.+.| |+...|+..-...| ..++. ..|.
T Consensus 407 t~~~-K~~Aii~ei~~~~---~~gqPVLVgT~SIe~SE~ls~~L~~~g-i~h~vLNAk~~e~E-A~IIa--~AG~----- 473 (925)
T PRK12903 407 TKHA-KWKAVVKEVKRVH---KKGQPILIGTAQVEDSETLHELLLEAN-IPHTVLNAKQNARE-AEIIA--KAGQ----- 473 (925)
T ss_pred cHHH-HHHHHHHHHHHHH---hcCCCEEEEeCcHHHHHHHHHHHHHCC-CCceeecccchhhH-HHHHH--hCCC-----
Confidence 3334 8888777776532 357899999999999999999999998 89999998643333 33343 3443
Q ss_pred cccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCC--------EEEEecCCCChhHHHHhhhhccCCC--CeE
Q 029806 110 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--------VLINYELPTKKETYIRRMTTCLAAG--TSF 179 (187)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~--------~VI~yd~P~~~~~y~~R~GR~~r~~--g~~ 179 (187)
+..|.|+|+. ++||.|+.--. |||..+.|.|..---|-.||+||.| |.+
T Consensus 474 -----------------~GaVTIATNM----AGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss 532 (925)
T PRK12903 474 -----------------KGAITIATNM----AGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGES 532 (925)
T ss_pred -----------------CCeEEEeccc----ccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcc
Confidence 5889999999 99999997543 9999999999988889999998875 665
Q ss_pred EEEEEe
Q 029806 180 SDIILL 185 (187)
Q Consensus 180 i~~v~~ 185 (187)
--|+++
T Consensus 533 ~f~lSL 538 (925)
T PRK12903 533 RFFISL 538 (925)
T ss_pred eEEEec
Confidence 566553
No 111
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.50 E-value=5e-07 Score=85.16 Aligned_cols=96 Identities=23% Similarity=0.366 Sum_probs=79.6
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc--------------------------------------CCceEEEEeccCCHHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL--------------------------------------ADISFSSLHSDLAETERT 94 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~--------------------------------------~~i~~~~lhg~~~~~eR~ 94 (187)
+.++||||++++.++.++..+.+. . .-+.+.|.+++.++|.
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~-~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIP-YGVAYHHAGLTSEERE 538 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecc-ccceecccccccchHH
Confidence 366999999999998776443221 2 2477899999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecC----CCChhHHHHhhh
Q 029806 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL----PTKKETYIRRMT 170 (187)
Q Consensus 95 ~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~----P~~~~~y~~R~G 170 (187)
.+-..||.|. ..+++||+. ++-|++.|..+++|-+-. +-+.-.|.|++|
T Consensus 539 ~iE~afr~g~-----------------------i~vl~aTST----laaGVNLPArRVIiraP~~g~~~l~~~~YkQM~G 591 (1008)
T KOG0950|consen 539 IIEAAFREGN-----------------------IFVLVATST----LAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVG 591 (1008)
T ss_pred HHHHHHHhcC-----------------------eEEEEecch----hhccCcCCcceeEEeCCccccchhhhhhHHhhhh
Confidence 9999999994 999999999 999999999999886542 457899999999
Q ss_pred hccCCC
Q 029806 171 TCLAAG 176 (187)
Q Consensus 171 R~~r~~ 176 (187)
|+||.+
T Consensus 592 RAGR~g 597 (1008)
T KOG0950|consen 592 RAGRTG 597 (1008)
T ss_pred hhhhcc
Confidence 997774
No 112
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.44 E-value=1.2e-06 Score=82.82 Aligned_cols=115 Identities=16% Similarity=0.226 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC-----------------------C---------------c
Q 029806 38 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA-----------------------D---------------I 79 (187)
Q Consensus 38 ~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~-----------------------~---------------i 79 (187)
...+++..+.. ..--++||||=+++.|++-+++|...+ . -
T Consensus 554 ~~l~lin~L~k--~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~R 631 (1248)
T KOG0947|consen 554 TWLDLINHLRK--KNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLR 631 (1248)
T ss_pred hHHHHHHHHhh--cccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhh
Confidence 34444444222 456899999999999999999887631 0 0
Q ss_pred eEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCC
Q 029806 80 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP 159 (187)
Q Consensus 80 ~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P 159 (187)
-+.+.||++=+--..-+-.-|.+|- ++||++|+. ++.|++.|.-.+|+ -.+-
T Consensus 632 GiaVHH~GlLPivKE~VE~LFqrGl-----------------------VKVLFATET----FAMGVNMPARtvVF-~Sl~ 683 (1248)
T KOG0947|consen 632 GIAVHHGGLLPIVKEVVELLFQRGL-----------------------VKVLFATET----FAMGVNMPARTVVF-SSLR 683 (1248)
T ss_pred cchhhcccchHHHHHHHHHHHhcCc-----------------------eEEEeehhh----hhhhcCCCceeEEe-eehh
Confidence 1556777776655555555688884 999999999 99999999755555 3332
Q ss_pred C---------ChhHHHHhhhhccCCC----CeEEEE
Q 029806 160 T---------KKETYIRRMTTCLAAG----TSFSDI 182 (187)
Q Consensus 160 ~---------~~~~y~~R~GR~~r~~----g~~i~~ 182 (187)
. .+-.|.|++||+||++ |.+|-+
T Consensus 684 KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~ 719 (1248)
T KOG0947|consen 684 KHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIM 719 (1248)
T ss_pred hccCcceeecCChhHHhhhccccccccCcCceEEEE
Confidence 2 4789999999999996 555544
No 113
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.41 E-value=2.4e-06 Score=76.87 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=79.7
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
.+-|||.. +++.+-.+...+.+.|.-++.+++|++|++.|.+--..|.+.. +..+|||
T Consensus 357 ~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~---------------------~e~dvlV 414 (700)
T KOG0953|consen 357 PGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPS---------------------NECDVLV 414 (700)
T ss_pred CCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCC---------------------CccceEE
Confidence 36677744 5668889999998888545999999999999999999998842 2499999
Q ss_pred EecCCCCcCcCCCCCCCCCEEEEecC---------CCChhHHHHhhhhccCCC
Q 029806 133 VTDACLPLLSSGESAISARVLINYEL---------PTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 133 ~Td~~~~~~~rGlDi~~v~~VI~yd~---------P~~~~~y~~R~GR~~r~~ 176 (187)
+||+ .++|+++. ++-||-|++ |-+..+-.|-+||+||.+
T Consensus 415 AsDA----IGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953|consen 415 ASDA----IGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred eecc----cccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccc
Confidence 9999 99999975 788888875 346788899999997764
No 114
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.40 E-value=6.1e-06 Score=77.90 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=95.3
Q ss_pred hHHHHHHHHH-HHHhcCCCCCC--cEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccc
Q 029806 34 FKMETLVELL-HLVVAGRRPGL--PMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (187)
Q Consensus 34 ~Kl~~L~~ll-~~~~~~~~~~~--k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~ 110 (187)
.|+..+.+++ ..+.. .+. +++||++.....+-+...|...+ +....++|.++.+.|...+++|.++.
T Consensus 692 ~k~~~l~~ll~~~~~~---~~~~~kvlifsq~t~~l~il~~~l~~~~-~~~~~ldG~~~~~~r~~~i~~f~~~~------ 761 (866)
T COG0553 692 GKLQALDELLLDKLLE---EGHYHKVLIFSQFTPVLDLLEDYLKALG-IKYVRLDGSTPAKRRQELIDRFNADE------ 761 (866)
T ss_pred hHHHHHHHHHHHHHHh---hcccccEEEEeCcHHHHHHHHHHHHhcC-CcEEEEeCCCChhhHHHHHHHhhcCC------
Confidence 3888888888 44332 234 89999999999999999999988 68999999999999999999999962
Q ss_pred ccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 111 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
....+++++.+ ++.|+++..+++||+||..+++....|.+.|+
T Consensus 762 ---------------~~~v~lls~ka----gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa 804 (866)
T COG0553 762 ---------------EEKVFLLSLKA----GGLGLNLTGADTVILFDPWWNPAVELQAIDRA 804 (866)
T ss_pred ---------------CCceEEEEecc----cccceeecccceEEEeccccChHHHHHHHHHH
Confidence 13667888889 99999999999999999999999998888887
No 115
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.38 E-value=3.1e-06 Score=77.42 Aligned_cols=135 Identities=14% Similarity=0.228 Sum_probs=101.1
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC----C---ceEEEEeccCCHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA----D---ISFSSLHSDLAET 91 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~----~---i~~~~lhg~~~~~ 91 (187)
.-.++-+|..-+..+.--+.+.-+++- .. ..+.+-++||....++++++++.|.+.. . ..+..+||.++.+
T Consensus 226 ~fPVei~y~~~p~~dYv~a~~~tv~~I-h~-~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e 303 (674)
T KOG0922|consen 226 TFPVEILYLKEPTADYVDAALITVIQI-HL-TEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSE 303 (674)
T ss_pred CCceeEEeccCCchhhHHHHHHHHHHH-Hc-cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHH
Confidence 344666666655555444444444443 22 2566799999999999999999997751 1 1357899999999
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEec--------------
Q 029806 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-------------- 157 (187)
Q Consensus 92 eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd-------------- 157 (187)
++.++.+.--.| ..+++++|++ ++..+.++++.+||+-+
T Consensus 304 ~Q~rvF~p~p~g-----------------------~RKvIlsTNI----AETSlTI~GI~YVVDsG~vK~~~y~p~~g~~ 356 (674)
T KOG0922|consen 304 EQSRVFDPAPPG-----------------------KRKVILSTNI----AETSLTIDGIRYVVDSGFVKQKKYNPRTGLD 356 (674)
T ss_pred HhhccccCCCCC-----------------------cceEEEEcce----eeeeEEecceEEEEcCCceEEEeeccccCcc
Confidence 988877766655 5999999999 99999999999999543
Q ss_pred ----CCCChhHHHHhhhhccCCC-CeEEEE
Q 029806 158 ----LPTKKETYIRRMTTCLAAG-TSFSDI 182 (187)
Q Consensus 158 ----~P~~~~~y~~R~GR~~r~~-g~~i~~ 182 (187)
.|-|..+=.||.||+||-+ |.|+-+
T Consensus 357 ~L~v~~ISkasA~QRaGRAGRt~pGkcyRL 386 (674)
T KOG0922|consen 357 SLIVVPISKASANQRAGRAGRTGPGKCYRL 386 (674)
T ss_pred ceeEEechHHHHhhhcccCCCCCCceEEEe
Confidence 3668899999999987773 666543
No 116
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.33 E-value=1.8e-06 Score=82.10 Aligned_cols=124 Identities=11% Similarity=0.135 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----C--CceEEEEeccCCHHHHHHHHHHHhcccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----A--DISFSSLHSDLAETERTLILEEFRHTAMKW 107 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~--~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~ 107 (187)
...+.+.+++..+.. ....+.+|||.+....+..+...|... + ...+..+|+.|+..+++.+.+.--.|
T Consensus 395 id~~Li~~li~~I~~-~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g---- 469 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDE-REFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKG---- 469 (924)
T ss_pred ccHHHHHHHHHhccc-CCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCC----
Confidence 367788888887666 455799999999999999999998642 1 25788899999999998887777666
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEE--------ecCCC----------ChhHHHHhh
Q 029806 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN--------YELPT----------KKETYIRRM 169 (187)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~--------yd~P~----------~~~~y~~R~ 169 (187)
..+|+++|++ ++..|.++||-+||+ ||.-. +...=.||.
T Consensus 470 -------------------~RKIIlaTNI----AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~ 526 (924)
T KOG0920|consen 470 -------------------TRKIILATNI----AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRR 526 (924)
T ss_pred -------------------cchhhhhhhh----HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhc
Confidence 4999999999 999999999999995 45333 345558999
Q ss_pred hhccCC-CCeEEEEEEe
Q 029806 170 TTCLAA-GTSFSDIILL 185 (187)
Q Consensus 170 GR~~r~-~g~~i~~v~~ 185 (187)
||+||- .|.|+.+.+.
T Consensus 527 GRAGRv~~G~cy~L~~~ 543 (924)
T KOG0920|consen 527 GRAGRVRPGICYHLYTR 543 (924)
T ss_pred ccccCccCCeeEEeech
Confidence 999886 6988887653
No 117
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.33 E-value=9.1e-07 Score=81.90 Aligned_cols=106 Identities=22% Similarity=0.223 Sum_probs=76.9
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCC--------------------------------------ceEEEEeccCCHHH
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLAD--------------------------------------ISFSSLHSDLAETE 92 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~--------------------------------------i~~~~lhg~~~~~e 92 (187)
+...++|||+=+++.|+.++..+.++.+ --+...|+|+=+--
T Consensus 381 ~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIl 460 (1041)
T KOG0948|consen 381 RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPIL 460 (1041)
T ss_pred hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHH
Confidence 3457999999999999999877766410 01445666665544
Q ss_pred HHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEE----EecCC----CChhH
Q 029806 93 RTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYELP----TKKET 164 (187)
Q Consensus 93 R~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI----~yd~P----~~~~~ 164 (187)
..-+-=-|..| -+++|++|+. ++.|++.|.-.+|+ -||-- -+.-.
T Consensus 461 KE~IEILFqEG-----------------------LvKvLFATET----FsiGLNMPAkTVvFT~~rKfDG~~fRwissGE 513 (1041)
T KOG0948|consen 461 KEVIEILFQEG-----------------------LVKVLFATET----FSIGLNMPAKTVVFTAVRKFDGKKFRWISSGE 513 (1041)
T ss_pred HHHHHHHHhcc-----------------------HHHHHHhhhh----hhhccCCcceeEEEeeccccCCcceeeecccc
Confidence 44444457777 4999999999 99999999876665 23321 25688
Q ss_pred HHHhhhhccCCC----CeEEEEE
Q 029806 165 YIRRMTTCLAAG----TSFSDII 183 (187)
Q Consensus 165 y~~R~GR~~r~~----g~~i~~v 183 (187)
|+|+.||+||++ |.+|.++
T Consensus 514 YIQMSGRAGRRG~DdrGivIlmi 536 (1041)
T KOG0948|consen 514 YIQMSGRAGRRGIDDRGIVILMI 536 (1041)
T ss_pred eEEecccccccCCCCCceEEEEe
Confidence 999999999985 7777765
No 118
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.32 E-value=4.6e-06 Score=74.34 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=92.8
Q ss_pred HHHHHHHHHHH-HhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccc
Q 029806 35 KMETLVELLHL-VVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 35 Kl~~L~~ll~~-~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
|+..+++.+.. .+....+..|++|||......+.+...+.+++ +....+.|..+..+|....+.|...+
T Consensus 473 K~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~-vg~IRIDGst~s~~R~ll~qsFQ~se--------- 542 (689)
T KOG1000|consen 473 KAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRK-VGSIRIDGSTPSHRRTLLCQSFQTSE--------- 542 (689)
T ss_pred ccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcC-CCeEEecCCCCchhHHHHHHHhcccc---------
Confidence 55666665543 11235677899999999999999999999988 89999999999999999999999874
Q ss_pred cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChh------HHHHhhhhccCCCCeEEEEEE
Q 029806 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKE------TYIRRMTTCLAAGTSFSDIIL 184 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~------~y~~R~GR~~r~~g~~i~~v~ 184 (187)
...-.+++-.+ ++.||++..++.|+-.++|+++. +-.||+| ..+.+.+-|++
T Consensus 543 ------------ev~VAvlsItA----~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiG---QkssV~v~ylv 600 (689)
T KOG1000|consen 543 ------------EVRVAVLSITA----AGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIG---QKSSVFVQYLV 600 (689)
T ss_pred ------------ceEEEEEEEee----cccceeeeccceEEEEEecCCCceEEechhhhhhcc---ccceeeEEEEE
Confidence 12334555566 89999999999999999999864 4455554 44555555443
No 119
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.30 E-value=3.3e-06 Score=75.33 Aligned_cols=111 Identities=18% Similarity=0.166 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
.|++.|++-+..+.. .....+.|||.......+.+...|.+.| +.++-|-|+|++..|...++.|++..
T Consensus 620 TKIEAL~EEl~~l~~-rd~t~KsIVFSQFTSmLDLi~~rL~kaG-fscVkL~GsMs~~ardatik~F~nd~--------- 688 (791)
T KOG1002|consen 620 TKIEALVEELYFLRE-RDRTAKSIVFSQFTSMLDLIEWRLGKAG-FSCVKLVGSMSPAARDATIKYFKNDI--------- 688 (791)
T ss_pred hHHHHHHHHHHHHHH-cccchhhhhHHHHHHHHHHHHHHhhccC-ceEEEeccCCChHHHHHHHHHhccCC---------
Confidence 388888887766554 3445789999999999999999999999 59999999999999999999999974
Q ss_pred cCCCCCcCCCCCCcee-EEEEecCCCCcCcCCCCCCCCCEEEEecCCCCh------hHHHHhhhhc
Q 029806 114 QSGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKK------ETYIRRMTTC 172 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~-iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~------~~y~~R~GR~ 172 (187)
..+ .|++-.+ .+-.+++..+++|+..|+-|++ .+-+||||..
T Consensus 689 -------------~c~vfLvSLkA----GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~ 737 (791)
T KOG1002|consen 689 -------------DCRVFLVSLKA----GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQY 737 (791)
T ss_pred -------------CeEEEEEEecc----CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCc
Confidence 344 4555555 7888999999999999987764 5667788763
No 120
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.29 E-value=1.7e-05 Score=73.92 Aligned_cols=118 Identities=16% Similarity=0.117 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
|...+.+-+.... ..+.++||.|.++...+.++..|.+.| |+...|+..-..+| ..++.+--.
T Consensus 412 k~~Aii~ei~~~~---~~GrPVLVgt~sI~~SE~ls~~L~~~g-I~h~vLNAk~~~~E-A~IIa~AG~------------ 474 (764)
T PRK12326 412 KNDAIVEHIAEVH---ETGQPVLVGTHDVAESEELAERLRAAG-VPAVVLNAKNDAEE-ARIIAEAGK------------ 474 (764)
T ss_pred HHHHHHHHHHHHH---HcCCCEEEEeCCHHHHHHHHHHHHhCC-CcceeeccCchHhH-HHHHHhcCC------------
Confidence 8888777776532 467899999999999999999999998 89999998744333 444443222
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCC---------------CEEEEecCCCChhHHHHhhhhccCCC--C
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA---------------RVLINYELPTKKETYIRRMTTCLAAG--T 177 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v---------------~~VI~yd~P~~~~~y~~R~GR~~r~~--g 177 (187)
+..|.|+|+. ++||.|+.=- =|||--..|.|..---|=.||+||.+ |
T Consensus 475 ------------~gaVTIATNM----AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpG 538 (764)
T PRK12326 475 ------------YGAVTVSTQM----AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPG 538 (764)
T ss_pred ------------CCcEEEEecC----CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCC
Confidence 4789999999 9999998732 18999999999999999999998775 6
Q ss_pred eEEEEEEe
Q 029806 178 SFSDIILL 185 (187)
Q Consensus 178 ~~i~~v~~ 185 (187)
.+--|+++
T Consensus 539 ss~f~lSl 546 (764)
T PRK12326 539 SSVFFVSL 546 (764)
T ss_pred ceeEEEEc
Confidence 66666654
No 121
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.27 E-value=1.2e-05 Score=77.98 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=95.2
Q ss_pred CCCCCceEEEEccC--cchHHHHHHHHH-HHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc------------------
Q 029806 18 HFSQPRHFYVAVDR--LQFKMETLVELL-HLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------------ 76 (187)
Q Consensus 18 ~~~~i~~~~~~~~~--~~~Kl~~L~~ll-~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~------------------ 76 (187)
.|-.|.|-|+-+.. +..+++...+.. +.+.. ...+.++|||+-+++...+.+.+++..
T Consensus 509 RpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~-~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~ 587 (1674)
T KOG0951|consen 509 RPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLE-HAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASR 587 (1674)
T ss_pred CcCCccceEeccccCCchHHHHHHHHHHHHHHHH-hCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchh
Confidence 34557777766554 333444444332 22222 134589999999999888888776620
Q ss_pred -------------------CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCC
Q 029806 77 -------------------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDAC 137 (187)
Q Consensus 77 -------------------~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~ 137 (187)
++ -+...|.||+..+|..+-+-|+.|. +++|++|-.
T Consensus 588 eilrtea~~~kn~dLkdLLpy-gfaIHhAGl~R~dR~~~EdLf~~g~-----------------------iqvlvstat- 642 (1674)
T KOG0951|consen 588 EILRTEAGQAKNPDLKDLLPY-GFAIHHAGLNRKDRELVEDLFADGH-----------------------IQVLVSTAT- 642 (1674)
T ss_pred hhhhhhhhcccChhHHHHhhc-cceeeccCCCcchHHHHHHHHhcCc-----------------------eeEEEeehh-
Confidence 22 5778899999999999999999995 999999999
Q ss_pred CCcCcCCCCCCCCCEEE----EecC------CCChhHHHHhhhhccCC
Q 029806 138 LPLLSSGESAISARVLI----NYEL------PTKKETYIRRMTTCLAA 175 (187)
Q Consensus 138 ~~~~~rGlDi~~v~~VI----~yd~------P~~~~~y~~R~GR~~r~ 175 (187)
++.|+++|.=.++| -||+ +-++.+.+||.||+||.
T Consensus 643 ---lawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 643 ---LAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ---hhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 99999999766555 4664 44799999999999776
No 122
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.26 E-value=1.4e-05 Score=77.41 Aligned_cols=112 Identities=17% Similarity=0.258 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhcCCC-----------CCCcEEEEeCChhhHHHHHHHHHcc--CCceEEEEeccCCHHHHHHHHHHHh
Q 029806 35 KMETLVELLHLVVAGRR-----------PGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFR 101 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~-----------~~~k~IVF~~~~~~~~~l~~~L~~~--~~i~~~~lhg~~~~~eR~~~l~~Fr 101 (187)
|+..|.++|.+--.+.+ ...+++|||+-+++++-+.+-|.+. +.+.-..|.|..++..|.+++++|.
T Consensus 1311 Kl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN 1390 (1549)
T KOG0392|consen 1311 KLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFN 1390 (1549)
T ss_pred hHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhc
Confidence 89999999977222111 3479999999999999999988765 3345558999999999999999999
Q ss_pred cccccccccccccCCCCCcCCCCCCceeE-EEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 102 HTAMKWNQKVTEQSGDESETGKDEHKSHM-IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-Lv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
+++ .+++ |++|-+ .+-|+++.+++.||.++=-|++..=+|-+-|+
T Consensus 1391 ~Dp----------------------tIDvLlLTThV----GGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1391 EDP----------------------TIDVLLLTTHV----GGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred CCC----------------------ceeEEEEeeec----cccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 985 5774 567888 99999999999999999888877767766666
No 123
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.25 E-value=9e-06 Score=72.75 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=86.5
Q ss_pred EEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
.+++-++. |++.---|++- -. ..+.++|||.++.-...+.+-.| | --+++|..++.||.++|+.|+.++
T Consensus 520 lLyvMNP~-KFraCqfLI~~-HE--~RgDKiIVFsDnvfALk~YAikl---~---KpfIYG~Tsq~ERm~ILqnFq~n~- 588 (776)
T KOG1123|consen 520 LLYVMNPN-KFRACQFLIKF-HE--RRGDKIIVFSDNVFALKEYAIKL---G---KPFIYGPTSQNERMKILQNFQTNP- 588 (776)
T ss_pred eeeecCcc-hhHHHHHHHHH-HH--hcCCeEEEEeccHHHHHHHHHHc---C---CceEECCCchhHHHHHHHhcccCC-
Confidence 34455666 77765555543 22 35689999999887776666655 3 224899999999999999999985
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCC-CChhHHHHhhhhccC
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLA 174 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P-~~~~~y~~R~GR~~r 174 (187)
+++-++.+.+ +...+|+|+++++|...-- .+...=.||.||..|
T Consensus 589 ---------------------~vNTIFlSKV----gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILR 633 (776)
T KOG1123|consen 589 ---------------------KVNTIFLSKV----GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILR 633 (776)
T ss_pred ---------------------ccceEEEeec----cCccccCCcccEEEEEcccccchHHHHHHHHHHHH
Confidence 7888999999 9999999999999987643 467777899998733
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.22 E-value=5.3e-06 Score=79.37 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc---CCceEEEEeccCCHHHHHHHHHHHhcccccccccccc
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~---~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
+.+.+.+..+.. ...++++||+++.+.++.++..|... ..+. .+..+.. ..|.+++++|+.++
T Consensus 660 ~~ia~~i~~l~~--~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~--------- 725 (850)
T TIGR01407 660 QEIASYIIEITA--ITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGE--------- 725 (850)
T ss_pred HHHHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCC---------
Confidence 345555555443 34579999999999999999999752 1123 2333333 58899999999974
Q ss_pred cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCE--EEEecCC
Q 029806 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARV--LINYELP 159 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~--VI~yd~P 159 (187)
..+|++|+. +.+|+|+|+..+ ||...+|
T Consensus 726 --------------~~iLlgt~s----f~EGVD~~g~~l~~viI~~LP 755 (850)
T TIGR01407 726 --------------KAILLGTSS----FWEGVDFPGNGLVCLVIPRLP 755 (850)
T ss_pred --------------CeEEEEcce----eecccccCCCceEEEEEeCCC
Confidence 789999999 999999999774 6666655
No 125
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.15 E-value=7.5e-06 Score=75.14 Aligned_cols=139 Identities=13% Similarity=0.194 Sum_probs=102.9
Q ss_pred CCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc--------CCceEEEEecc
Q 029806 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSD 87 (187)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~--------~~i~~~~lhg~ 87 (187)
|..+-.+.-+|-..++.+.--..+..+++- .- ..|.+-+|||.--.+.++...+.|..+ ..+.+..+|+.
T Consensus 438 PGRRyPVdi~Yt~~PEAdYldAai~tVlqI-H~-tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaN 515 (902)
T KOG0923|consen 438 PGRRYPVDIFYTKAPEADYLDAAIVTVLQI-HL-TQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYAN 515 (902)
T ss_pred cCcccceeeecccCCchhHHHHHHhhheee-Ee-ccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeecccc
Confidence 344556777888888777444445555443 22 246689999998888877666655432 24788999999
Q ss_pred CCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEec----------
Q 029806 88 LAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE---------- 157 (187)
Q Consensus 88 ~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd---------- 157 (187)
+|.+.+..+.+---.| -.+|+++|++ ++..|.+++|.+||.=+
T Consensus 516 LPselQakIFePtP~g-----------------------aRKVVLATNI----AETSlTIdgI~yViDpGf~K~nsynpr 568 (902)
T KOG0923|consen 516 LPSELQAKIFEPTPPG-----------------------ARKVVLATNI----AETSLTIDGIKYVIDPGFVKQNSYNPR 568 (902)
T ss_pred CChHHHHhhcCCCCCC-----------------------ceeEEEeecc----hhhceeecCeEEEecCccccccCcCCC
Confidence 9999988887766555 3899999999 99999999999999543
Q ss_pred --------CCCChhHHHHhhhhccCCC-CeEEEEE
Q 029806 158 --------LPTKKETYIRRMTTCLAAG-TSFSDII 183 (187)
Q Consensus 158 --------~P~~~~~y~~R~GR~~r~~-g~~i~~v 183 (187)
.|-|..+-.||+||+||-+ |.|+=+.
T Consensus 569 tGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLY 603 (902)
T KOG0923|consen 569 TGMESLLVTPISKASANQRAGRAGRTGPGKCFRLY 603 (902)
T ss_pred cCceeEEEeeechhhhhhhccccCCCCCCceEEee
Confidence 2557788899999988774 7766543
No 126
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.11 E-value=3.8e-05 Score=71.78 Aligned_cols=104 Identities=14% Similarity=0.064 Sum_probs=76.6
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccC----CceEEEEeccCCHH---------------------HHHHHHHHHhcccccc
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAET---------------------ERTLILEEFRHTAMKW 107 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~----~i~~~~lhg~~~~~---------------------eR~~~l~~Fr~~~~~~ 107 (187)
..+++|||.++..+..+.+.|.+.. ......+++..+.. ....++++|++.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~---- 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE---- 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC----
Confidence 5899999999999999998886541 12456677654433 123566677653
Q ss_pred cccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC------CCeEEE
Q 029806 108 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA------GTSFSD 181 (187)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~------~g~~i~ 181 (187)
+..++||++|. +..|.|.|.+++++..-+-.+ ..++|.+||+.|- .|.++.
T Consensus 590 ------------------~~~~ilIVvdm----llTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvD 646 (667)
T TIGR00348 590 ------------------ENPKLLIVVDM----LLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVD 646 (667)
T ss_pred ------------------CCceEEEEEcc----cccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEE
Confidence 25899999999 999999999998887775554 5689999999762 356666
Q ss_pred EE
Q 029806 182 II 183 (187)
Q Consensus 182 ~v 183 (187)
|+
T Consensus 647 y~ 648 (667)
T TIGR00348 647 YR 648 (667)
T ss_pred Cc
Confidence 54
No 127
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.10 E-value=2.2e-05 Score=72.76 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
.|+..|-+||..+. ..+.++++|+.-.++++.+.++|..+++ ....|.|......|..++..|...+
T Consensus 1028 gKL~~LDeLL~kLk---aegHRvL~yfQMTkM~dl~EdYl~yr~Y-~ylRLDGSsk~~dRrd~vrDwQ~sd--------- 1094 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLK---AEGHRVLMYFQMTKMIDLIEDYLVYRGY-TYLRLDGSSKASDRRDVVRDWQASD--------- 1094 (1185)
T ss_pred cceeeHHHHHHHhh---cCCceEEehhHHHHHHHHHHHHHHhhcc-ceEEecCcchhhHHHHHHhhccCCc---------
Confidence 37888888887743 3568999999999999999999999995 9999999999999999999999965
Q ss_pred cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
....|++|.+ .+-||++..++.||-||--+++..=.|-+.|+
T Consensus 1095 -------------iFvFLLSTRA----GGLGINLTAADTViFYdSDWNPT~D~QAMDRA 1136 (1185)
T KOG0388|consen 1095 -------------IFVFLLSTRA----GGLGINLTAADTVIFYDSDWNPTADQQAMDRA 1136 (1185)
T ss_pred -------------eEEEEEeccc----CcccccccccceEEEecCCCCcchhhHHHHHH
Confidence 6889999999 99999999999999999988876666655555
No 128
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.04 E-value=3.8e-05 Score=73.52 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=78.6
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc----CC------------------ceEEEEeccCCHHHHHHHHHHHhccccccccc
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL----AD------------------ISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~----~~------------------i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~ 110 (187)
+.+++|||.++....+.++.|.+. |. --....|.+|.-+.|.-+-+.|..|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G------- 421 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG------- 421 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC-------
Confidence 689999999999998888888654 10 1245678899999999999999999
Q ss_pred ccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCC-----C------ChhHHHHhhhhccCC----
Q 029806 111 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP-----T------KKETYIRRMTTCLAA---- 175 (187)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P-----~------~~~~y~~R~GR~~r~---- 175 (187)
.+++|+||.. ++-|+++|. .+||..+-+ . +.-+-+|-.||+||.
T Consensus 422 ----------------~i~vL~cTaT----LAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~ 480 (1230)
T KOG0952|consen 422 ----------------HIKVLCCTAT----LAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDS 480 (1230)
T ss_pred ----------------CceEEEecce----eeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCC
Confidence 4999999999 999999996 455544332 2 356778999998776
Q ss_pred CCeEEE
Q 029806 176 GTSFSD 181 (187)
Q Consensus 176 ~g~~i~ 181 (187)
.|.++-
T Consensus 481 ~G~giI 486 (1230)
T KOG0952|consen 481 SGEGII 486 (1230)
T ss_pred CceEEE
Confidence 355554
No 129
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.03 E-value=9.1e-05 Score=70.84 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
.|...+.+-+.... ..+.+++|-|.++...+.++..|.+.| |+...|+..-..+| ..++.+ .|.
T Consensus 552 ~k~~ai~~ei~~~~---~~grPvLigt~si~~se~ls~~L~~~g-i~h~vLNak~~~~E-a~iia~--AG~--------- 615 (970)
T PRK12899 552 EKYHAIVAEIASIH---RKGNPILIGTESVEVSEKLSRILRQNR-IEHTVLNAKNHAQE-AEIIAG--AGK--------- 615 (970)
T ss_pred HHHHHHHHHHHHHH---hCCCCEEEEeCcHHHHHHHHHHHHHcC-CcceecccchhhhH-HHHHHh--cCC---------
Confidence 38888887776632 356899999999999999999999988 89999998643333 233332 232
Q ss_pred cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCC--------EEEEecCCCChhHHHHhhhhccCCC--CeEEEEE
Q 029806 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--------VLINYELPTKKETYIRRMTTCLAAG--TSFSDII 183 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~--------~VI~yd~P~~~~~y~~R~GR~~r~~--g~~i~~v 183 (187)
+..|.|+|+. ++||.|+.=-. |||.-..|.+..---|=.||+||.| |.+--|+
T Consensus 616 -------------~g~VTIATNm----AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l 678 (970)
T PRK12899 616 -------------LGAVTVATNM----AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL 678 (970)
T ss_pred -------------CCcEEEeecc----ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE
Confidence 4789999999 99999985322 7999999999999999999998875 6666666
Q ss_pred Ee
Q 029806 184 LL 185 (187)
Q Consensus 184 ~~ 185 (187)
++
T Consensus 679 Sl 680 (970)
T PRK12899 679 SF 680 (970)
T ss_pred Ec
Confidence 54
No 130
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.01 E-value=3.3e-05 Score=73.87 Aligned_cols=105 Identities=17% Similarity=0.297 Sum_probs=86.9
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCC---hhhHHHHHHHHHccCCceEEEEeccCCHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSS---RDELDAVCSAVSNLADISFSSLHSDLAETER 93 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~---~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR 93 (187)
....||...|+.. + -...+.++++. .+ .-.|||++. +..++++++.|+..| +++..+|+. .
T Consensus 309 ~~LRNIvD~y~~~---~-~~e~~~elvk~-lG-----~GgLIfV~~d~G~e~aeel~e~Lr~~G-i~a~~~~a~-----~ 372 (1187)
T COG1110 309 EGLRNIVDIYVES---E-SLEKVVELVKK-LG-----DGGLIFVPIDYGREKAEELAEYLRSHG-INAELIHAE-----K 372 (1187)
T ss_pred hhhhheeeeeccC---c-cHHHHHHHHHH-hC-----CCeEEEEEcHHhHHHHHHHHHHHHhcC-ceEEEeecc-----c
Confidence 3456777777666 2 46677777777 22 578999999 999999999999999 799999983 2
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCC-CCEEEEecCCC
Q 029806 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-ARVLINYELPT 160 (187)
Q Consensus 94 ~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~-v~~VI~yd~P~ 160 (187)
...++.|..|+ +++||..--.|--+.||||+|. +.++|-|+.|.
T Consensus 373 ~~~le~F~~Ge-----------------------idvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 373 EEALEDFEEGE-----------------------VDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred hhhhhhhccCc-----------------------eeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 77899999996 9999998777777999999999 88999999995
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.98 E-value=6.4e-05 Score=71.61 Aligned_cols=139 Identities=14% Similarity=0.154 Sum_probs=99.6
Q ss_pred CCCCCCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHH
Q 029806 12 PCQSPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAET 91 (187)
Q Consensus 12 ~~~~~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~ 91 (187)
|+-.|..+....-. ++....+ |...+.+-+..+. ..+.++||-+.|+...+.++..|.+.| |+.-.|+..-..+
T Consensus 413 PTnkP~~R~D~~d~-vy~t~~e-K~~Ai~~ei~~~~---~~GrPVLVGT~SVe~SE~ls~~L~~~g-i~h~VLNAk~~~~ 486 (913)
T PRK13103 413 PPNKPLARKDFNDL-VYLTAEE-KYAAIITDIKECM---ALGRPVLVGTATIETSEHMSNLLKKEG-IEHKVLNAKYHEK 486 (913)
T ss_pred CCCCCcccccCCCe-EEcCHHH-HHHHHHHHHHHHH---hCCCCEEEEeCCHHHHHHHHHHHHHcC-CcHHHhccccchh
Confidence 33334444443333 2333334 8888887777632 467899999999999999999999988 8888888764433
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCC-----------------------
Q 029806 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI----------------------- 148 (187)
Q Consensus 92 eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~----------------------- 148 (187)
| .+++. +.|. +..|.|+|+. ++||.|+.
T Consensus 487 E-A~IIa--~AG~----------------------~GaVTIATNM----AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~ 537 (913)
T PRK13103 487 E-AEIIA--QAGR----------------------PGALTIATNM----AGRGTDILLGGNWEVEVAALENPTPEQIAQI 537 (913)
T ss_pred H-HHHHH--cCCC----------------------CCcEEEeccC----CCCCCCEecCCchHHHHHhhhhhhHHHHHHH
Confidence 3 33444 3332 5789999999 99999994
Q ss_pred ---------CCC-----EEEEecCCCChhHHHHhhhhccCCC--CeEEEEEEe
Q 029806 149 ---------SAR-----VLINYELPTKKETYIRRMTTCLAAG--TSFSDIILL 185 (187)
Q Consensus 149 ---------~v~-----~VI~yd~P~~~~~y~~R~GR~~r~~--g~~i~~v~~ 185 (187)
.|. |||--..|.|..-=-|=.||+||.| |.+--|+++
T Consensus 538 ~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSl 590 (913)
T PRK13103 538 KADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 590 (913)
T ss_pred HHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEc
Confidence 121 7899999999988899999998775 666666654
No 132
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.96 E-value=1.7e-05 Score=73.13 Aligned_cols=133 Identities=11% Similarity=0.212 Sum_probs=94.3
Q ss_pred CCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHH----Hcc---C--CceEEEEeccCCHH
Q 029806 21 QPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAV----SNL---A--DISFSSLHSDLAET 91 (187)
Q Consensus 21 ~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L----~~~---~--~i~~~~lhg~~~~~ 91 (187)
.++-.|...+-++.--..+.+.+.--. ..+.+-++||..-...++..+..+ .+. + .+.++.+++.||..
T Consensus 533 PV~~~~~k~p~eDYVeaavkq~v~Ihl--~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~d 610 (1042)
T KOG0924|consen 533 PVEIMYTKTPVEDYVEAAVKQAVQIHL--SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPAD 610 (1042)
T ss_pred ceEEEeccCchHHHHHHHHhhheEeec--cCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchh
Confidence 345555555555534444444443211 245688999998776666555444 332 2 37899999999998
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEec--------------
Q 029806 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-------------- 157 (187)
Q Consensus 92 eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd-------------- 157 (187)
-+..+.+.--.| ..+++|+|++ ++..|.+|++.+||..+
T Consensus 611 lQ~kiFq~a~~~-----------------------vRK~IvATNI----AETSLTi~gI~yVID~Gy~K~kvyn~~~G~D 663 (1042)
T KOG0924|consen 611 LQAKIFQKAEGG-----------------------VRKCIVATNI----AETSLTIPGIRYVIDTGYCKLKVYNPRIGMD 663 (1042)
T ss_pred hhhhhcccCCCC-----------------------ceeEEEeccc----hhhceeecceEEEEecCceeeeecccccccc
Confidence 888777666565 4999999999 99999999999999654
Q ss_pred ----CCCChhHHHHhhhhccCC-CCeEEEE
Q 029806 158 ----LPTKKETYIRRMTTCLAA-GTSFSDI 182 (187)
Q Consensus 158 ----~P~~~~~y~~R~GR~~r~-~g~~i~~ 182 (187)
.|-+...--||.||+||- +|.|+-+
T Consensus 664 ~L~~~pIS~AnA~QRaGRAGRt~pG~cYRl 693 (1042)
T KOG0924|consen 664 ALQIVPISQANADQRAGRAGRTGPGTCYRL 693 (1042)
T ss_pred eeEEEechhccchhhccccCCCCCcceeee
Confidence 366777789999998776 4777644
No 133
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.93 E-value=8e-05 Score=69.94 Aligned_cols=110 Identities=14% Similarity=0.127 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhcC--CCC-CCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHHHhccccccc
Q 029806 36 METLVELLHLVVAG--RRP-GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWN 108 (187)
Q Consensus 36 l~~L~~ll~~~~~~--~~~-~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~ 108 (187)
.+.+...+.++... .++ .+|+||||.+.+.++.+...|.+. ++--+..+.|+- ++-+..++.|...+
T Consensus 406 ~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke---- 479 (875)
T COG4096 406 TETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKE---- 479 (875)
T ss_pred HHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcC----
Confidence 34455555443331 122 479999999999999999999765 112577788874 34455677777642
Q ss_pred ccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 109 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
.--+|.++.|+ +..|+|+|.|-.+|-+..=.|...|.|++||+
T Consensus 480 -----------------~~P~Iaitvdl----L~TGiDvpev~nlVF~r~VrSktkF~QMvGRG 522 (875)
T COG4096 480 -----------------KYPRIAITVDL----LTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRG 522 (875)
T ss_pred -----------------CCCceEEehhh----hhcCCCchheeeeeehhhhhhHHHHHHHhcCc
Confidence 13678889999 99999999999999999999999999999997
No 134
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.86 E-value=0.00011 Score=70.13 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=95.0
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----------------------CCceEEEEeccC
Q 029806 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----------------------ADISFSSLHSDL 88 (187)
Q Consensus 31 ~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----------------------~~i~~~~lhg~~ 88 (187)
....|+-+|+++|+. .. .-+.++|||..+..+++.+..+|..- | ..-..|.|..
T Consensus 1123 ~~SgKmiLLleIL~m-ce--eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~G-kDyyriDGst 1198 (1567)
T KOG1015|consen 1123 EHSGKMILLLEILRM-CE--EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRG-KDYYRLDGST 1198 (1567)
T ss_pred hcCcceehHHHHHHH-HH--HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecC-CceEEecCcc
Confidence 334489999999976 22 23589999999999999998888542 2 4567788999
Q ss_pred CHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHh
Q 029806 89 AETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRR 168 (187)
Q Consensus 89 ~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R 168 (187)
..++|....++|.... +....-.||+|.+ .+-||++-.++-||.||..|++..=+|-
T Consensus 1199 ~s~~R~k~~~~FNdp~-------------------NlRaRl~LISTRA----GsLGiNLvAANRVIIfDasWNPSyDtQS 1255 (1567)
T KOG1015|consen 1199 TSQSRKKWAEEFNDPT-------------------NLRARLFLISTRA----GSLGINLVAANRVIIFDASWNPSYDTQS 1255 (1567)
T ss_pred cHHHHHHHHHHhcCcc-------------------cceeEEEEEeecc----CccccceeecceEEEEecccCCccchHH
Confidence 9999999999998864 1223558999999 9999999999999999999999999998
Q ss_pred hhhc
Q 029806 169 MTTC 172 (187)
Q Consensus 169 ~GR~ 172 (187)
|=|+
T Consensus 1256 IFRv 1259 (1567)
T KOG1015|consen 1256 IFRV 1259 (1567)
T ss_pred HHHH
Confidence 8887
No 135
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.82 E-value=0.00022 Score=68.77 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
|...+.+-+..+. ..+.|+||-|.|+...+.|+..|...| |+.-+|+.....+| .+++.+ .|.
T Consensus 613 K~~Aii~ei~~~~---~~GrPVLVGT~SVe~SE~lS~~L~~~g-I~H~VLNAK~h~~E-AeIVA~--AG~---------- 675 (1112)
T PRK12901 613 KYNAVIEEITELS---EAGRPVLVGTTSVEISELLSRMLKMRK-IPHNVLNAKLHQKE-AEIVAE--AGQ---------- 675 (1112)
T ss_pred HHHHHHHHHHHHH---HCCCCEEEEeCcHHHHHHHHHHHHHcC-CcHHHhhccchhhH-HHHHHh--cCC----------
Confidence 8888888777633 467899999999999999999999988 88888887654444 333333 222
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCC---C-----CEEEEecCCCChhHHHHhhhhccCCC--CeEEEEEE
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS---A-----RVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 184 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~---v-----~~VI~yd~P~~~~~y~~R~GR~~r~~--g~~i~~v~ 184 (187)
+..|.|+|+. ++||.|+.= | =|||--+.|.|..---|=.||+||.| |.+--|++
T Consensus 676 ------------~GaVTIATNM----AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 676 ------------PGTVTIATNM----AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred ------------CCcEEEeccC----cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEE
Confidence 4789999999 999999871 2 38999999999999999999998875 66666665
Q ss_pred e
Q 029806 185 L 185 (187)
Q Consensus 185 ~ 185 (187)
+
T Consensus 740 L 740 (1112)
T PRK12901 740 L 740 (1112)
T ss_pred c
Confidence 4
No 136
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00021 Score=69.09 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=80.6
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccC---------------------------Cce-------------EEEEeccCCHH
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLA---------------------------DIS-------------FSSLHSDLAET 91 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~---------------------------~i~-------------~~~lhg~~~~~ 91 (187)
...++|+|+=+++.|+..++.+.... +++ +...|++|=+.
T Consensus 378 ~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~ 457 (1041)
T COG4581 378 NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPA 457 (1041)
T ss_pred cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchH
Confidence 45799999999999998887776320 011 33678888888
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEE----Eec----CCCChh
Q 029806 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYE----LPTKKE 163 (187)
Q Consensus 92 eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI----~yd----~P~~~~ 163 (187)
.|..+-+-|..|- ++++++|.. ++.|++.|.=++|+ .|| -+-++.
T Consensus 458 ~K~~vE~Lfq~GL-----------------------vkvvFaTeT----~s~GiNmPartvv~~~l~K~dG~~~r~L~~g 510 (1041)
T COG4581 458 IKELVEELFQEGL-----------------------VKVVFATET----FAIGINMPARTVVFTSLSKFDGNGHRWLSPG 510 (1041)
T ss_pred HHHHHHHHHhccc-----------------------eeEEeehhh----hhhhcCCcccceeeeeeEEecCCceeecChh
Confidence 9888889999985 999999999 99999999755544 333 134789
Q ss_pred HHHHhhhhccCCC----CeEEEE
Q 029806 164 TYIRRMTTCLAAG----TSFSDI 182 (187)
Q Consensus 164 ~y~~R~GR~~r~~----g~~i~~ 182 (187)
.|.|..||+||++ |.+|.+
T Consensus 511 Ey~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 511 EYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred HHHHhhhhhccccccccceEEEe
Confidence 9999999999996 666554
No 137
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.64 E-value=0.00018 Score=55.85 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=57.1
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
++.++||++|.+.++.+.+.+...+ .+.+ ... +..++..++++|++++ ..
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v-~~q---~~~~~~~~l~~~~~~~-----------------------~~ 61 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPV-FVQ---GSKSRDELLEEFKRGE-----------------------GA 61 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCE-EES---TCCHHHHHHHHHCCSS-----------------------SE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhccccccee-eec---CcchHHHHHHHHHhcc-----------------------Ce
Confidence 4899999999999999999997653 1222 222 3678899999999984 77
Q ss_pred EEEEec--CCCCcCcCCCCCCC--CCEEEEecCC
Q 029806 130 MIVVTD--ACLPLLSSGESAIS--ARVLINYELP 159 (187)
Q Consensus 130 iLv~Td--~~~~~~~rGlDi~~--v~~VI~yd~P 159 (187)
+|+++. - +.+|+|+++ +++||...+|
T Consensus 62 il~~v~~g~----~~EGiD~~~~~~r~vii~glP 91 (167)
T PF13307_consen 62 ILLAVAGGS----FSEGIDFPGDLLRAVIIVGLP 91 (167)
T ss_dssp EEEEETTSC----CGSSS--ECESEEEEEEES--
T ss_pred EEEEEeccc----EEEeecCCCchhheeeecCCC
Confidence 999998 7 899999997 7789998887
No 138
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.57 E-value=0.00023 Score=67.78 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHHHHhcCC------CCCCcEEEEeCChhhHHHHHHHHHc
Q 029806 32 LQFKMETLVELLHLVVAGR------RPGLPMIVCCSSRDELDAVCSAVSN 75 (187)
Q Consensus 32 ~~~Kl~~L~~ll~~~~~~~------~~~~k~IVF~~~~~~~~~l~~~L~~ 75 (187)
+..|...|.++|+++.... .+.+++||||+..+++..|.++|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3449999999998876631 3567899999999999999999965
No 139
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.54 E-value=0.0047 Score=55.09 Aligned_cols=132 Identities=12% Similarity=0.124 Sum_probs=103.4
Q ss_pred CCCCCCceEEEEcc------CcchHHHHHHH-HHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 17 SHFSQPRHFYVAVD------RLQFKMETLVE-LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 17 ~~~~~i~~~~~~~~------~~~~Kl~~L~~-ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
....+|+|.|..++ ..+.+++.+.+ +|..+.. ....+.++||+++--.--.+..+|++.+ +....+|--.+
T Consensus 258 ~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~-~sF~~i~EYts 335 (442)
T PF06862_consen 258 QVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKEN-ISFVQISEYTS 335 (442)
T ss_pred ccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcC-CeEEEecccCC
Confidence 45678889988744 33456776665 5555442 3566899999999999999999999877 79999999999
Q ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhh
Q 029806 90 ETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRM 169 (187)
Q Consensus 90 ~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~ 169 (187)
..+-.+.-..|..|. .++|+.|+=. -.=|=..+.+|.+||-|.+|..+.-|..-+
T Consensus 336 ~~~isRAR~~F~~G~-----------------------~~iLL~TER~--HFfrRy~irGi~~viFY~~P~~p~fY~El~ 390 (442)
T PF06862_consen 336 NSDISRARSQFFHGR-----------------------KPILLYTERF--HFFRRYRIRGIRHVIFYGPPENPQFYSELL 390 (442)
T ss_pred HHHHHHHHHHHHcCC-----------------------ceEEEEEhHH--hhhhhceecCCcEEEEECCCCChhHHHHHH
Confidence 999999999999994 9999999741 123445677899999999999999998888
Q ss_pred hhccCC
Q 029806 170 TTCLAA 175 (187)
Q Consensus 170 GR~~r~ 175 (187)
......
T Consensus 391 n~~~~~ 396 (442)
T PF06862_consen 391 NMLDES 396 (442)
T ss_pred hhhccc
Confidence 655333
No 140
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.49 E-value=0.00057 Score=65.40 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
|+++|-+++-.+. ..+.+++.||.-..-.+-+..+|.-.+ ++-..|.|.....+|-..++.|...+.
T Consensus 711 KfELLDRiLPKLk---atgHRVLlF~qMTrlmdimEdyL~~~~-~kYlRLDG~TK~~eRg~ll~~FN~Pds--------- 777 (1157)
T KOG0386|consen 711 KFELLDRILPKLK---ATGHRVLLFSQMTRLMDILEDYLQIRE-YKYLRLDGQTKVEERGDLLEIFNAPDS--------- 777 (1157)
T ss_pred HHHHHHhhhHHHH---hcCcchhhHHHHHHHHHHHHHHHhhhh-hheeeecCCcchhhHHHHHHHhcCCCC---------
Confidence 8888888887743 467999999999999999999998887 599999999999999999999998742
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
.-...|++|.+ ...|++++-++.||.||--+++....|+--|+
T Consensus 778 -----------~yf~Fllstra----gglglNlQtadtviifdsdwnp~~d~qaqdra 820 (1157)
T KOG0386|consen 778 -----------PYFIFLLSTRA----GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRA 820 (1157)
T ss_pred -----------ceeeeeeeecc----cccccchhhcceEEEecCCCCchhHHHHHHHH
Confidence 23678999999 99999999999999999888776665544444
No 141
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.49 E-value=0.0018 Score=60.21 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=60.9
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEE
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 131 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 131 (187)
.+++++||+.+.+.++.+.+.+...........+|+ .++...+++|++.. ..-++
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~----------------------~~~~l 532 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASG----------------------EGLIL 532 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhc----------------------CCeEE
Confidence 345999999999999999999987541123444444 45558999999973 11799
Q ss_pred EEecCCCCcCcCCCCCCCC--CEEEEecCCC
Q 029806 132 VVTDACLPLLSSGESAISA--RVLINYELPT 160 (187)
Q Consensus 132 v~Td~~~~~~~rGlDi~~v--~~VI~yd~P~ 160 (187)
|+|.- +++|+|+++= ++||...+|-
T Consensus 533 v~~gs----f~EGVD~~g~~l~~vvI~~lPf 559 (654)
T COG1199 533 VGGGS----FWEGVDFPGDALRLVVIVGLPF 559 (654)
T ss_pred Eeecc----ccCcccCCCCCeeEEEEEecCC
Confidence 99999 9999999984 6788777663
No 142
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.48 E-value=0.0031 Score=60.16 Aligned_cols=82 Identities=11% Similarity=0.240 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEecc-CCHHHHHHHHHHHhcccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD-LAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~-~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
|...+.+-+... ...+.+++|-|.|+...+.++..|.+.| |+..+|+.. ...+.=.+++.+ .|.
T Consensus 409 K~~AI~~ei~~~---~~~grPVLIgT~SIe~SE~ls~~L~~~g-i~h~vLNAk~~~~~~EA~IIA~--AG~--------- 473 (870)
T CHL00122 409 KWRAIADECLQM---HQTGRPILIGTTTIEKSELLSQLLKEYR-LPHQLLNAKPENVRRESEIVAQ--AGR--------- 473 (870)
T ss_pred HHHHHHHHHHHH---HhcCCCEEEeeCCHHHHHHHHHHHHHcC-CccceeeCCCccchhHHHHHHh--cCC---------
Confidence 777776665542 2467999999999999999999999998 899999986 222222445554 332
Q ss_pred cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCC
Q 029806 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI 148 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~ 148 (187)
+..|.|+|+. ++||.|+.
T Consensus 474 -------------~G~VTIATNM----AGRGTDI~ 491 (870)
T CHL00122 474 -------------KGSITIATNM----AGRGTDII 491 (870)
T ss_pred -------------CCcEEEeccc----cCCCcCee
Confidence 5889999999 99998873
No 143
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0011 Score=62.46 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=42.6
Q ss_pred CCceeEEEEecCCCCcCcCCCCCCCCCEEEE--------ecCCCC----------hhHHHHhhhhccCCC-CeEEEEE
Q 029806 125 EHKSHMIVVTDACLPLLSSGESAISARVLIN--------YELPTK----------KETYIRRMTTCLAAG-TSFSDII 183 (187)
Q Consensus 125 ~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~--------yd~P~~----------~~~y~~R~GR~~r~~-g~~i~~v 183 (187)
.+..-++|+|++ ++..|.+|++.+||. ||--+. ..+--||+||+||-+ |.|+=+-
T Consensus 628 ~g~RLcVVaTNV----AETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLY 701 (1172)
T KOG0926|consen 628 KGERLCVVATNV----AETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLY 701 (1172)
T ss_pred CCceEEEEeccc----hhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehh
Confidence 566778999999 999999999999995 443333 344479999998875 7776543
No 144
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.34 E-value=0.00034 Score=66.90 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=60.3
Q ss_pred EEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEec-CC
Q 029806 81 FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-LP 159 (187)
Q Consensus 81 ~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd-~P 159 (187)
+...|++|+..+|..+.=-||.|. ..||++|.. ++-||+.|--.+|+--| +-
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~-----------------------L~VlfaT~T----LsLGiNMPCrTVvF~gDsLQ 1017 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGH-----------------------LQVLFATET----LSLGINMPCRTVVFAGDSLQ 1017 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCc-----------------------eEEEEEeee----hhcccCCCceeEEEeccccc
Confidence 567899999999999999999995 999999999 99999999766666655 44
Q ss_pred CChhHHHHhhhhccCCC
Q 029806 160 TKKETYIRRMTTCLAAG 176 (187)
Q Consensus 160 ~~~~~y~~R~GR~~r~~ 176 (187)
-++--|-|++||+||++
T Consensus 1018 L~plny~QmaGRAGRRG 1034 (1330)
T KOG0949|consen 1018 LDPLNYKQMAGRAGRRG 1034 (1330)
T ss_pred cCchhHHhhhccccccc
Confidence 57899999999999996
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=97.25 E-value=0.00015 Score=68.74 Aligned_cols=100 Identities=12% Similarity=0.197 Sum_probs=72.3
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHc-----------c-CCceEEE--EeccCCHHHHHHHHHHHhcccccccccccccCCC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSN-----------L-ADISFSS--LHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 117 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~-----------~-~~i~~~~--lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~ 117 (187)
|..+.|-||.++++...+++.+.. . ..+++.. +.|.|+-.+|...++ ..+.
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~-l~~~-------------- 523 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLE-LKNT-------------- 523 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHh-ccCC--------------
Confidence 346788899988888777665432 1 1244444 558899999933332 2211
Q ss_pred CCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC
Q 029806 118 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 175 (187)
Q Consensus 118 ~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~ 175 (187)
......+||---.. +++|+|+|..+.||-||+-.+.-+.+|-+||+||+
T Consensus 524 -----~~~neckIlSNaRc----LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 524 -----FEPNECKILSNARC----LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred -----CCcchheeeccchh----hhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 01113778877777 99999999999999999999999999999999776
No 146
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.18 E-value=0.0036 Score=56.26 Aligned_cols=134 Identities=13% Similarity=0.171 Sum_probs=90.3
Q ss_pred CceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc--------CCceEEEEeccCCHHHH
Q 029806 22 PRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSDLAETER 93 (187)
Q Consensus 22 i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~--------~~i~~~~lhg~~~~~eR 93 (187)
+.-+|..-...+ .++..++.+-+|-. ....+-++||......++..++.+... |.+++..|| +.+.
T Consensus 224 vEi~Yt~e~erD-ylEaairtV~qih~-~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~q 297 (699)
T KOG0925|consen 224 VEIFYTPEPERD-YLEAAIRTVLQIHM-CEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQ 297 (699)
T ss_pred eEEEecCCCChh-HHHHHHHHHHHHHh-ccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhh
Confidence 344554444445 55555444433333 234689999999999999988888632 447888998 2232
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecC---------------
Q 029806 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL--------------- 158 (187)
Q Consensus 94 ~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~--------------- 158 (187)
..+ |+-.+ +........+++|+|++ ++..+.++.|.+||.-++
T Consensus 298 q~i---Fep~p---------------~~~~~~~~RkvVvstni----aetsltidgiv~VIDpGf~kqkVYNPRIRvesl 355 (699)
T KOG0925|consen 298 QRI---FEPAP---------------EKRNGAYGRKVVVSTNI----AETSLTIDGIVFVIDPGFSKQKVYNPRIRVESL 355 (699)
T ss_pred ccc---cCCCC---------------cccCCCccceEEEEecc----hheeeeeccEEEEecCchhhhcccCcceeeeee
Confidence 222 22210 12223345899999999 999999999999996553
Q ss_pred ---CCChhHHHHhhhhccCC-CCeEEEEE
Q 029806 159 ---PTKKETYIRRMTTCLAA-GTSFSDII 183 (187)
Q Consensus 159 ---P~~~~~y~~R~GR~~r~-~g~~i~~v 183 (187)
|-|..+-.||.||+||. +|.|.++-
T Consensus 356 lv~PISkasA~qR~gragrt~pGkcfrLY 384 (699)
T KOG0925|consen 356 LVSPISKASAQQRAGRAGRTRPGKCFRLY 384 (699)
T ss_pred eeccchHhHHHHHhhhccCCCCCceEEee
Confidence 66788889999999665 68887754
No 147
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.10 E-value=0.0036 Score=60.76 Aligned_cols=94 Identities=15% Similarity=0.239 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCc-eEEEEeccCCHHHHHHHHHHHhcccccccccccccC
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI-SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i-~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~ 115 (187)
+.+.+.+..+.. ..+++++||++|.+..+.+++.|.....- ....+--+++...|..++++|+.++
T Consensus 738 ~~la~~i~~l~~--~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~----------- 804 (928)
T PRK08074 738 EEVAAYIAKIAK--ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFD----------- 804 (928)
T ss_pred HHHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcC-----------
Confidence 455555554433 34579999999999999999999754210 1222332454567899999999874
Q ss_pred CCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCC--CEEEEecCC
Q 029806 116 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--RVLINYELP 159 (187)
Q Consensus 116 ~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v--~~VI~yd~P 159 (187)
..||++|.- +.+|+|+|+- ++||...+|
T Consensus 805 ------------~~iLlG~~s----FwEGVD~pg~~l~~viI~kLP 834 (928)
T PRK08074 805 ------------KAILLGTSS----FWEGIDIPGDELSCLVIVRLP 834 (928)
T ss_pred ------------CeEEEecCc----ccCccccCCCceEEEEEecCC
Confidence 679999998 9999999984 678877765
No 148
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.09 E-value=0.013 Score=54.72 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=89.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccc
Q 029806 32 LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (187)
Q Consensus 32 ~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~ 111 (187)
...|+..+.+.++.+. .....+++|...=.....-+...|.+.| .....+||....++|+.+++.|....
T Consensus 727 ~S~Ki~~~l~~le~i~--~~skeK~viVSQwtsvLniv~~hi~~~g-~~y~si~Gqv~vK~Rq~iv~~FN~~k------- 796 (901)
T KOG4439|consen 727 PSCKIAMVLEILETIL--TSSKEKVVIVSQWTSVLNIVRKHIQKGG-HIYTSITGQVLVKDRQEIVDEFNQEK------- 796 (901)
T ss_pred chhHHHHHHHHHHHHh--hcccceeeehhHHHHHHHHHHHHHhhCC-eeeeeecCccchhHHHHHHHHHHhcc-------
Confidence 3348999999988863 3556778886666666677778888888 58999999999999999999998753
Q ss_pred cccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 112 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
++....|+.-.+ .+-||++...+|+|..|+=|++.-=.|-+-|.
T Consensus 797 -------------~~~rVmLlSLtA----GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRI 840 (901)
T KOG4439|consen 797 -------------GGARVMLLSLTA----GGVGLNLIGANHLILVDLHWNPALEQQACDRI 840 (901)
T ss_pred -------------CCceEEEEEEcc----CcceeeecccceEEEEecccCHHHHHHHHHHH
Confidence 224556677777 89999999999999999999987666655554
No 149
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.0044 Score=58.45 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=62.2
Q ss_pred HHHHHHHHcc-CCceEEEEeccCCHH--HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcC
Q 029806 67 DAVCSAVSNL-ADISFSSLHSDLAET--ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSS 143 (187)
Q Consensus 67 ~~l~~~L~~~-~~i~~~~lhg~~~~~--eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~r 143 (187)
+++.+.|... +..++..+.++.... .-...++.|..|+ .+|||.|.. ++.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge-----------------------~dILiGTQm----iaK 546 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGE-----------------------ADILIGTQM----IAK 546 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCC-----------------------CCeeecchh----hhc
Confidence 4555555433 336889999886543 3467899999995 999999999 999
Q ss_pred CCCCCCCCEEEE--ecC----CC------ChhHHHHhhhhccCCCCeE
Q 029806 144 GESAISARVLIN--YEL----PT------KKETYIRRMTTCLAAGTSF 179 (187)
Q Consensus 144 GlDi~~v~~VI~--yd~----P~------~~~~y~~R~GR~~r~~g~~ 179 (187)
|.|||++.+|.- -|. |. ...-|.|-.||+||.+..+
T Consensus 547 G~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G 594 (730)
T COG1198 547 GHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPG 594 (730)
T ss_pred CCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCC
Confidence 999999998654 442 21 3556678889998854333
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.67 E-value=0.016 Score=54.59 Aligned_cols=94 Identities=16% Similarity=0.234 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccC
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~ 115 (187)
.+.+.+.+..+.. ..+.++||+.+.+.++.++..|..... .....+|. ..|..++++|++.-
T Consensus 520 ~~~~~~~i~~l~~---~~gg~LVlFtSy~~l~~v~~~l~~~~~-~~ll~Q~~---~~~~~ll~~f~~~~----------- 581 (697)
T PRK11747 520 TAEMAEFLPELLE---KHKGSLVLFASRRQMQKVADLLPRDLR-LMLLVQGD---QPRQRLLEKHKKRV----------- 581 (697)
T ss_pred HHHHHHHHHHHHh---cCCCEEEEeCcHHHHHHHHHHHHHhcC-CcEEEeCC---chHHHHHHHHHHHh-----------
Confidence 4456666655443 345689999999999999999874322 34555664 35788998888630
Q ss_pred CCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCC--CCEEEEecCC
Q 029806 116 GDESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELP 159 (187)
Q Consensus 116 ~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~--v~~VI~yd~P 159 (187)
..+...||++|.- +.+|+|+|+ +++||...+|
T Consensus 582 --------~~~~~~VL~g~~s----f~EGVD~pGd~l~~vII~kLP 615 (697)
T PRK11747 582 --------DEGEGSVLFGLQS----FAEGLDLPGDYLTQVIITKIP 615 (697)
T ss_pred --------ccCCCeEEEEecc----ccccccCCCCceEEEEEEcCC
Confidence 0012569999988 999999987 6889888766
No 151
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.60 E-value=0.018 Score=55.35 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccC
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~ 115 (187)
.+.+.+.+..+. ..+++++|++.|.+.++.+++.|.... +.. ...|... .|..++++|++++
T Consensus 633 ~~~~~~~i~~~~---~~~g~~LVLFtS~~~l~~v~~~l~~~~-~~~-l~Qg~~~--~~~~l~~~F~~~~----------- 694 (820)
T PRK07246 633 AEEIAKRLEELK---QLQQPILVLFNSKKHLLAVSDLLDQWQ-VSH-LAQEKNG--TAYNIKKRFDRGE----------- 694 (820)
T ss_pred HHHHHHHHHHHH---hcCCCEEEEECcHHHHHHHHHHHhhcC-CcE-EEeCCCc--cHHHHHHHHHcCC-----------
Confidence 345555555433 245899999999999999999997654 344 5555322 3566899999874
Q ss_pred CCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCC--CCEEEEecCC
Q 029806 116 GDESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELP 159 (187)
Q Consensus 116 ~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~--v~~VI~yd~P 159 (187)
..||++|.- +.+|+|+|. ...||...+|
T Consensus 695 ------------~~vLlG~~s----FwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 695 ------------QQILLGLGS----FWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred ------------CeEEEecch----hhCCCCCCCCCeEEEEEecCC
Confidence 679999999 999999973 5556666655
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.46 E-value=0.032 Score=52.65 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCC---c---eEEEEeccCCHHHHHHHHHHHhcccccccc
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD---I---SFSSLHSDLAETERTLILEEFRHTAMKWNQ 109 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~---i---~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~ 109 (187)
.+.+.+.+..+.. ..++.++||++|-...+.+.+.+...+. + +..+.-+. ...++..++++|++.-
T Consensus 507 ~~~l~~~i~~~~~--~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~----- 578 (705)
T TIGR00604 507 VRNLGELLVEFSK--IIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAV----- 578 (705)
T ss_pred HHHHHHHHHHHhh--cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHH-----
Confidence 4455666655443 3458899999999999999988775431 0 22222221 1267899999998641
Q ss_pred cccccCCCCCcCCCCCCceeEEEEe--cCCCCcCcCCCCCCC--CCEEEEecCCC
Q 029806 110 KVTEQSGDESETGKDEHKSHMIVVT--DACLPLLSSGESAIS--ARVLINYELPT 160 (187)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~iLv~T--d~~~~~~~rGlDi~~--v~~VI~yd~P~ 160 (187)
..++..+|+++ .- +++|||+++ +++||...+|-
T Consensus 579 --------------~~~~gavL~av~gGk----~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 579 --------------SEGRGAVLLSVAGGK----VSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred --------------hcCCceEEEEecCCc----ccCccccCCCCCcEEEEEccCC
Confidence 00125689998 67 899999998 78899999885
No 153
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.35 E-value=0.023 Score=54.66 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEecc-CCHHHHHHHHHHHhccccccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD-LAETERTLILEEFRHTAMKWNQKVT 112 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~-~~~~eR~~~l~~Fr~~~~~~~~~~~ 112 (187)
.|...+.+-+.... ..+.+++|-|.|+...+.++..|.+.| |+..+|+.. ...+.=.+++.+ .|.
T Consensus 423 ~K~~Ai~~ei~~~~---~~GrPVLIgT~SVe~SE~ls~~L~~~g-i~h~vLNAk~~~~~~EA~IIa~--AG~-------- 488 (939)
T PRK12902 423 AKWRAVANETAEMH---KQGRPVLVGTTSVEKSELLSALLQEQG-IPHNLLNAKPENVEREAEIVAQ--AGR-------- 488 (939)
T ss_pred HHHHHHHHHHHHHH---hCCCCEEEeeCCHHHHHHHHHHHHHcC-CchheeeCCCcchHhHHHHHHh--cCC--------
Confidence 38888887776632 467999999999999999999999998 899999986 333333445554 343
Q ss_pred ccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCC
Q 029806 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI 148 (187)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~ 148 (187)
+..|.|+|+. ++||.|+.
T Consensus 489 --------------~GaVTIATNM----AGRGTDIk 506 (939)
T PRK12902 489 --------------KGAVTIATNM----AGRGTDII 506 (939)
T ss_pred --------------CCcEEEeccC----CCCCcCEe
Confidence 5889999999 99998874
No 154
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.30 E-value=0.035 Score=51.86 Aligned_cols=82 Identities=11% Similarity=-0.004 Sum_probs=61.9
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEE
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 131 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 131 (187)
..++++|.+.+.+.++.+++.|...-. ....+.|+.+ .|..++++|+..- ..+.-.||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~-~~~l~qg~~~--~~~~l~~~f~~~~-------------------~~~~~~vL 526 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIP-AEIVIQSEKN--RLASAEQQFLALY-------------------ANGIQPVL 526 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcC-CCEEEeCCCc--cHHHHHHHHHHhh-------------------cCCCCcEE
Confidence 457888888899999999999975421 4566667543 5677899999841 00126799
Q ss_pred EEecCCCCcCcCCCCC----------CCCCEEEEecCC
Q 029806 132 VVTDACLPLLSSGESA----------ISARVLINYELP 159 (187)
Q Consensus 132 v~Td~~~~~~~rGlDi----------~~v~~VI~yd~P 159 (187)
++|+- +-+|+|+ ..+++||...+|
T Consensus 527 ~gt~s----fweGvDv~~~~~~p~~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 527 IAAGG----AWTGIDLTHKPVSPDKDNLLTDLIITCAP 560 (636)
T ss_pred EeCCc----cccccccCCccCCCCCCCcccEEEEEeCC
Confidence 99999 9999999 238899988887
No 155
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.14 E-value=0.0033 Score=63.34 Aligned_cols=92 Identities=13% Similarity=0.236 Sum_probs=76.3
Q ss_pred CcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC-----------HHHHHHHHHHHhcccccccccccccCCCCCcCC
Q 029806 54 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA-----------ETERTLILEEFRHTAMKWNQKVTEQSGDESETG 122 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~-----------~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~ 122 (187)
-..|+||+.+..+..+.+.+++..-..+..+.|.+. ...+.+++..|+..+
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~------------------ 354 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHE------------------ 354 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhh------------------
Confidence 456899999999998888887653223444666542 334678899999985
Q ss_pred CCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 123 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 123 ~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
.++|+.|.+ +..|+|++.++.|+.++.|....+|+|+.||+
T Consensus 355 -----ln~L~~~~~----~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~ 395 (1606)
T KOG0701|consen 355 -----LNLLIATSV----LEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRA 395 (1606)
T ss_pred -----hhHHHHHHH----HHhhcchhhhhhheeccCcchHHHHHHhhccc
Confidence 999999999 99999999999999999999999999999997
No 156
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.07 E-value=0.1 Score=49.15 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=75.5
Q ss_pred EEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 27 VAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 27 ~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
+..+...-|......++..... .++++||.++++.-+..+.+.|.+. | +.+..+||+++..+|.+.+.+.+.|+
T Consensus 167 l~~~TGSGKT~v~l~~i~~~l~---~g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v~~~~s~~s~~~r~~~~~~~~~g~- 241 (679)
T PRK05580 167 LDGVTGSGKTEVYLQAIAEVLA---QGKQALVLVPEIALTPQMLARFRARFG-APVAVLHSGLSDGERLDEWRKAKRGE- 241 (679)
T ss_pred EECCCCChHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhC-CCEEEEECCCCHHHHHHHHHHHHcCC-
Confidence 3333344488777776665332 3578999999999999999988764 5 68999999999999999999998884
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEec
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 157 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd 157 (187)
.+|+|+|.- +. -+.+.++.+||--+
T Consensus 242 ----------------------~~IVVgTrs----al-~~p~~~l~liVvDE 266 (679)
T PRK05580 242 ----------------------AKVVIGARS----AL-FLPFKNLGLIIVDE 266 (679)
T ss_pred ----------------------CCEEEeccH----Hh-cccccCCCEEEEEC
Confidence 899999985 22 25567888877554
No 157
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.02 E-value=0.049 Score=49.56 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHHHHHhcccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
|......++..... .++++||.++++.-+..+.+.|++. + ..+..+||+++..+|.+.+.+.+.|+
T Consensus 10 KT~v~l~~i~~~l~---~g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~~~g~--------- 76 (505)
T TIGR00595 10 KTEVYLQAIEKVLA---LGKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKVKNGE--------- 76 (505)
T ss_pred HHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHHHcCC---------
Confidence 77777666665332 3578999999999999999988764 5 58999999999999999999888874
Q ss_pred cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEec
Q 029806 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 157 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd 157 (187)
.+|+|+|.. +. -..+.+..+||--+
T Consensus 77 --------------~~IVVGTrs----al-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 77 --------------ILVVIGTRS----AL-FLPFKNLGLIIVDE 101 (505)
T ss_pred --------------CCEEECChH----HH-cCcccCCCEEEEEC
Confidence 889999976 22 24567788877443
No 158
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.98 E-value=0.053 Score=51.04 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=72.4
Q ss_pred EEEccCcchHHHHHH-HHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHc----cCCceEEEEeccCCHHHHHHHHHHH
Q 029806 26 YVAVDRLQFKMETLV-ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~-~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~----~~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
.+..+...-|..... -++..+ ..+.+++|.++|+.-+...++.+.+ .| +++..+||+++..+|.+.++..
T Consensus 286 Ll~~~TGSGKT~va~~~il~~~----~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l 360 (681)
T PRK10917 286 LLQGDVGSGKTVVAALAALAAI----EAGYQAALMAPTEILAEQHYENLKKLLEPLG-IRVALLTGSLKGKERREILEAI 360 (681)
T ss_pred EEECCCCCcHHHHHHHHHHHHH----HcCCeEEEEeccHHHHHHHHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHH
Confidence 344444444554333 333332 2357899999999988877776654 35 7999999999999999999999
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEE
Q 029806 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI 154 (187)
Q Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI 154 (187)
..|+ .+|+|+|.. ++...+.+.++.+||
T Consensus 361 ~~g~-----------------------~~IvVgT~~---ll~~~v~~~~l~lvV 388 (681)
T PRK10917 361 ASGE-----------------------ADIVIGTHA---LIQDDVEFHNLGLVI 388 (681)
T ss_pred hCCC-----------------------CCEEEchHH---HhcccchhcccceEE
Confidence 9984 999999986 255667888998877
No 159
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.95 E-value=0.082 Score=49.69 Aligned_cols=93 Identities=12% Similarity=0.101 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHHHHHhccccccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~ 112 (187)
.|.+.+.++++.... .++++||.++.+..+..+.+.|+.. |.-.+..+|++++..+|.+.+.+.+.|+
T Consensus 172 GKTevyl~~i~~~l~---~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~-------- 240 (665)
T PRK14873 172 DWARRLAAAAAATLR---AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ-------- 240 (665)
T ss_pred cHHHHHHHHHHHHHH---cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC--------
Confidence 388888888887543 4678999999999999999999764 3137999999999999999999999985
Q ss_pred ccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEec
Q 029806 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 157 (187)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd 157 (187)
.+|+|.|.- +--.=+++..+||-.|
T Consensus 241 ---------------~~IViGtRS-----AvFaP~~~LgLIIvdE 265 (665)
T PRK14873 241 ---------------ARVVVGTRS-----AVFAPVEDLGLVAIWD 265 (665)
T ss_pred ---------------CcEEEEcce-----eEEeccCCCCEEEEEc
Confidence 899999986 3445667777777665
No 160
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.39 E-value=0.088 Score=39.78 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCC--CCEEEEecCC
Q 029806 88 LAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELP 159 (187)
Q Consensus 88 ~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~--v~~VI~yd~P 159 (187)
.+..+...++++|+... ...||+++.- +++|+|+++ +++||...+|
T Consensus 31 ~~~~~~~~~l~~f~~~~----------------------~~~iL~~~~~----~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 31 EDGKETGKLLEKYVEAC----------------------ENAILLATAR----FSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred CChhHHHHHHHHHHHcC----------------------CCEEEEEccc----eecceecCCCCeeEEEEEecC
Confidence 44556789999999852 1268999988 999999998 5678888876
No 161
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.28 E-value=0.091 Score=49.00 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=72.2
Q ss_pred EEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHHH
Q 029806 26 YVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 26 ~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
.+..+...-|... +..++..+ ..+.+++|.++|+.-+..+++.+.+. | +++..+||+++..+|...++..
T Consensus 260 Ll~g~TGSGKT~va~l~il~~~----~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i 334 (630)
T TIGR00643 260 LLQGDVGSGKTLVAALAMLAAI----EAGYQVALMAPTEILAEQHYNSLRNLLAPLG-IEVALLTGSLKGKRRKELLETI 334 (630)
T ss_pred EEECCCCCcHHHHHHHHHHHHH----HcCCcEEEECCHHHHHHHHHHHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHH
Confidence 3444444445543 33344432 23579999999999888877766543 5 7999999999999999999999
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEE
Q 029806 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI 154 (187)
Q Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI 154 (187)
..|+ .+|+|+|.. ++...+.+.++.+||
T Consensus 335 ~~g~-----------------------~~IiVgT~~---ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 335 ASGQ-----------------------IHLVVGTHA---LIQEKVEFKRLALVI 362 (630)
T ss_pred hCCC-----------------------CCEEEecHH---HHhccccccccceEE
Confidence 9884 899999987 355667888888877
No 162
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=95.12 E-value=0.11 Score=50.86 Aligned_cols=110 Identities=10% Similarity=0.051 Sum_probs=67.1
Q ss_pred EEEeCChhhHHHHHHHHHccC-----CceEEEEeccCCHHHHHHHHHHH---hcc---cccccccccccCCCCCcCCCCC
Q 029806 57 IVCCSSRDELDAVCSAVSNLA-----DISFSSLHSDLAETERTLILEEF---RHT---AMKWNQKVTEQSGDESETGKDE 125 (187)
Q Consensus 57 IVF~~~~~~~~~l~~~L~~~~-----~i~~~~lhg~~~~~eR~~~l~~F---r~~---~~~~~~~~~~~~~~~~~~~~~~ 125 (187)
+|=.++++.+-.+++.|.... .+...++|+..+...|..+.++. .+. +..|....--.-. +..+..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l---~~~~~~ 836 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLM---QNSPAL 836 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHH---hccccc
Confidence 445677777777777775441 25688899999877777665543 211 1011000000000 011123
Q ss_pred CceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 126 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 126 ~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
+...|+|+|.+ .+-|+|+. .++ -|--|.+.++.+||+||+.|.+
T Consensus 837 ~~~~i~v~Tqv----~E~g~D~d-fd~--~~~~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 837 NHLFIVLATPV----EEVGRDHD-YDW--AIADPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred CCCeEEEEeee----EEEEeccc-CCe--eeeccCcHHHHHHHhhcccccc
Confidence 35789999999 99999954 233 3345788999999999995554
No 163
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.11 E-value=0.091 Score=44.26 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=38.9
Q ss_pred ceeEEEEecCCCCcCcCCCCCCC--------CCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 127 KSHMIVVTDACLPLLSSGESAIS--------ARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 127 ~~~iLv~Td~~~~~~~rGlDi~~--------v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
..+|+|.+++ ++.|+-+.. -++-|-.++||+++..+|..||+-|.+
T Consensus 61 ~k~v~iis~A----gstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsn 114 (278)
T PF13871_consen 61 EKDVAIISDA----GSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSN 114 (278)
T ss_pred CceEEEEecc----cccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccc
Confidence 3899999999 999998874 235678899999999999999995553
No 164
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=94.85 E-value=0.088 Score=50.11 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=79.2
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHcc------C-----------CceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNL------A-----------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~------~-----------~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
-+.++|||..+....+.+.+.|.++ | .+.-+.+.|..+..+|..++++|....
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~---------- 787 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEP---------- 787 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCC----------
Confidence 3478999999999999999888775 1 134557888899999999999997752
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
+...-+|++|.+ .+-|+++..++-+|.||.-+++..=.|-+-|+
T Consensus 788 ----------~lsWlfllstra----g~lGinLIsanr~~ifda~wnpchdaqavcRv 831 (1387)
T KOG1016|consen 788 ----------GLSWLFLLSTRA----GSLGINLISANRCIIFDACWNPCHDAQAVCRV 831 (1387)
T ss_pred ----------Cceeeeeehhcc----ccccceeeccceEEEEEeecCccccchhhhhh
Confidence 223678999999 99999999999999999999887777766666
No 165
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.56 E-value=0.22 Score=48.60 Aligned_cols=100 Identities=17% Similarity=0.099 Sum_probs=74.7
Q ss_pred EEEEccCcchHHHHHHH-HHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHH
Q 029806 25 FYVAVDRLQFKMETLVE-LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~-ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
..+..+...-|...... ++..+. .+.+++|.++|+.-+...++.+.+. + +++..++|..+..++.++++.
T Consensus 475 ~Ll~adTGsGKT~val~a~l~al~----~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~ 549 (926)
T TIGR00580 475 RLVCGDVGFGKTEVAMRAAFKAVL----DGKQVAVLVPTTLLAQQHFETFKERFANFP-VTIELLSRFRSAKEQNEILKE 549 (926)
T ss_pred EEEECCCCccHHHHHHHHHHHHHH----hCCeEEEEeCcHHHHHHHHHHHHHHhccCC-cEEEEEeccccHHHHHHHHHH
Confidence 34444444446654332 333322 2479999999999999888877653 4 688999999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEE
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN 155 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~ 155 (187)
++.|. .+|+|+|.. ++.+.+.+.++.++|-
T Consensus 550 l~~g~-----------------------~dIVIGTp~---ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 550 LASGK-----------------------IDILIGTHK---LLQKDVKFKDLGLLII 579 (926)
T ss_pred HHcCC-----------------------ceEEEchHH---HhhCCCCcccCCEEEe
Confidence 99984 899999985 3667788899998773
No 166
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=94.43 E-value=0.67 Score=44.40 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccC
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~ 115 (187)
..++-.|+..+. .++++-|||+|...++.++.......+ ++..+++.-+..+ ++.|.
T Consensus 269 ~tF~~~L~~~L~----~gknIcvfsSt~~~~~~v~~~~~~~~~-~Vl~l~s~~~~~d----v~~W~-------------- 325 (824)
T PF02399_consen 269 TTFFSELLARLN----AGKNICVFSSTVSFAEIVARFCARFTK-KVLVLNSTDKLED----VESWK-------------- 325 (824)
T ss_pred hhHHHHHHHHHh----CCCcEEEEeChHHHHHHHHHHHHhcCC-eEEEEcCCCCccc----ccccc--------------
Confidence 445555555533 367888999999999999888888774 8888888765542 23343
Q ss_pred CCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCC--EEEEecCC----CChhHHHHhhhhc
Q 029806 116 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--VLINYELP----TKKETYIRRMTTC 172 (187)
Q Consensus 116 ~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~--~VI~yd~P----~~~~~y~~R~GR~ 172 (187)
+.+|++=|.+ ..-|+++.+.. -|+-|=-| .+..+..|.+||+
T Consensus 326 -----------~~~VviYT~~----itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRv 373 (824)
T PF02399_consen 326 -----------KYDVVIYTPV----ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRV 373 (824)
T ss_pred -----------ceeEEEEece----EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHH
Confidence 4999999999 99999997653 34445223 3456789999998
No 167
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.40 E-value=0.24 Score=47.06 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=77.5
Q ss_pred EEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 27 VAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 27 ~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
+.-.....|.+.+.+++..... .++++||-++.+.-...+.+.|..+ | .++..+|+++++.+|.+.+.+.+.|+
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~---~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~- 296 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLA---QGKQVLVLVPEIALTPQLLARFKARFG-AKVAVLHSGLSPGERYRVWRRARRGE- 296 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHH---cCCEEEEEeccccchHHHHHHHHHHhC-CChhhhcccCChHHHHHHHHHHhcCC-
Confidence 3333344499999999988554 4689999999998888888887654 6 59999999999999999999999995
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEe
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 156 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~y 156 (187)
.+|+|.|.- +--.=+++.-+||-.
T Consensus 297 ----------------------~~vVIGtRS-----AlF~Pf~~LGLIIvD 320 (730)
T COG1198 297 ----------------------ARVVIGTRS-----ALFLPFKNLGLIIVD 320 (730)
T ss_pred ----------------------ceEEEEech-----hhcCchhhccEEEEe
Confidence 999999986 334556667776644
No 168
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.82 E-value=0.32 Score=47.58 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=51.5
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccC------CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLA------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 124 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~------~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~ 124 (187)
..++++++.++|..-+...++.|.+.. ++.+. +|+.|+.+++++.+++|.+|+
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gd-------------------- 181 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGD-------------------- 181 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCC--------------------
Confidence 345899999999988888888886642 23333 999999999999999999995
Q ss_pred CCceeEEEEecC
Q 029806 125 EHKSHMIVVTDA 136 (187)
Q Consensus 125 ~~~~~iLv~Td~ 136 (187)
.+|||+|..
T Consensus 182 ---fdIlitTs~ 190 (1187)
T COG1110 182 ---FDILITTSQ 190 (1187)
T ss_pred ---ccEEEEeHH
Confidence 999999987
No 169
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.35 E-value=0.03 Score=52.58 Aligned_cols=113 Identities=11% Similarity=0.071 Sum_probs=90.3
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccc
Q 029806 32 LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (187)
Q Consensus 32 ~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~ 111 (187)
...|+..+.+++..... ... .+++||++-..-++-+...|...+ +....+.|.|+.+.|...+..|..+.
T Consensus 520 ~s~ki~~~~~~l~~~~~-s~~-~kiiifsq~~~~l~l~~~~l~~~~-~~~~~~~g~~~~~~r~~s~~~~~~~~------- 589 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEM-SEQ-PKIVIFSQLIWGLALVCLRLFFKG-FVFLRYDGEMLMKIRTKSFTDFPCDP------- 589 (674)
T ss_pred hhhhhHHHHHHHhhccC-CCC-CceeeehhHHHHHHHhhhhhhhcc-cccchhhhhhHHHHHHhhhcccccCc-------
Confidence 34488888888875222 122 499999999999999999998777 68999999999999999999999653
Q ss_pred cccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 112 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
.....+++..+ ..-|+++..++||+..|+-+++..--|-+-|+
T Consensus 590 --------------~~~vll~Slka----g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~ 632 (674)
T KOG1001|consen 590 --------------LVTALLMSLKA----GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRA 632 (674)
T ss_pred --------------cHHHHHHHHHH----hhhhhchhhhhHHHhhchhcChHHHHHHHHHH
Confidence 22445666677 99999999999999999999887776666555
No 170
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.04 E-value=0.59 Score=42.61 Aligned_cols=92 Identities=14% Similarity=0.251 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcC-CCCCCcEEEEeCChhhHHHHHHHHHccC----CceEEEEeccCCHHHHHHHHHHHhccccccccc
Q 029806 36 METLVELLHLVVAG-RRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (187)
Q Consensus 36 l~~L~~ll~~~~~~-~~~~~k~IVF~~~~~~~~~l~~~L~~~~----~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~ 110 (187)
+..++.+++.+... .....++||+++|+.-+..+++.+...+ .+.+..++|+++...+...+++ +
T Consensus 81 ~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~------- 150 (513)
T COG0513 81 AAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G------- 150 (513)
T ss_pred HHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-------
Confidence 44566777764421 1221229999999999888888775542 2678999999988877755444 5
Q ss_pred ccccCCCCCcCCCCCCceeEEEEecC-CCCcCcCC-CCCCCCCEEE
Q 029806 111 VTEQSGDESETGKDEHKSHMIVVTDA-CLPLLSSG-ESAISARVLI 154 (187)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~iLv~Td~-~~~~~~rG-lDi~~v~~VI 154 (187)
.+|+|+|+- .+.++.++ +++..+.++|
T Consensus 151 -----------------~~ivVaTPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 151 -----------------VDIVVATPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred -----------------CCEEEECccHHHHHHHcCCcchhhcCEEE
Confidence 889999973 00015555 7888888766
No 171
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=93.01 E-value=0.52 Score=45.19 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccc
Q 029806 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~ 112 (187)
..|...+.+-+.... ..+.|+||-+.+....+.+.+.|.+.| |+...|...-..+|-.-+-+.-+
T Consensus 412 ~~K~~Aiv~~I~~~~---~~gqPvLvgT~sie~SE~ls~~L~~~~-i~h~VLNAk~h~~EA~Iia~AG~----------- 476 (822)
T COG0653 412 EEKFKAIVEDIKERH---EKGQPVLVGTVSIEKSELLSKLLRKAG-IPHNVLNAKNHAREAEIIAQAGQ----------- 476 (822)
T ss_pred HHHHHHHHHHHHHHH---hcCCCEEEcCcceecchhHHHHHHhcC-CCceeeccccHHHHHHHHhhcCC-----------
Confidence 347877777776522 457999999999999999999999988 89888888755444222222222
Q ss_pred ccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCC
Q 029806 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS 149 (187)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~ 149 (187)
+..+-|+|+. ++||-|+.=
T Consensus 477 --------------~gaVTiATNM----AGRGTDIkL 495 (822)
T COG0653 477 --------------PGAVTIATNM----AGRGTDIKL 495 (822)
T ss_pred --------------CCcccccccc----ccCCccccc
Confidence 3668899999 999999853
No 172
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.93 E-value=0.39 Score=47.94 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=62.2
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (187)
+.+++|.++|+.-+..+++.+.+. + +.+..++|..+.+++.++++..+++. .
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~-v~i~~l~g~~s~~e~~~il~~l~~g~-----------------------~ 704 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMLSRFRSAKEQTQILAEAAEGK-----------------------I 704 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCC-ceEEEEECCCCHHHHHHHHHHHHhCC-----------------------C
Confidence 579999999999999888877643 3 67889999999999999999998874 8
Q ss_pred eEEEEecCCCCcCcCCCCCCCCCEEE
Q 029806 129 HMIVVTDACLPLLSSGESAISARVLI 154 (187)
Q Consensus 129 ~iLv~Td~~~~~~~rGlDi~~v~~VI 154 (187)
+|+|+|.. ++...+.+.++.++|
T Consensus 705 dIVVgTp~---lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 705 DILIGTHK---LLQSDVKWKDLGLLI 727 (1147)
T ss_pred CEEEECHH---HHhCCCCHhhCCEEE
Confidence 99999975 255567778888866
No 173
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.18 E-value=2.6 Score=32.70 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=63.1
Q ss_pred eEEEEccCcchHHHH-HHHHHHHHhcCC-CCCCcEEEEeCChhhHHHHHHHHHcc---CCceEEEEeccCCHHHHHHHHH
Q 029806 24 HFYVAVDRLQFKMET-LVELLHLVVAGR-RPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 24 ~~~~~~~~~~~Kl~~-L~~ll~~~~~~~-~~~~k~IVF~~~~~~~~~l~~~L~~~---~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
+..+..+...-|... +..++..+.... ....++||.|+++.-+....+.+... ..+.+..++|+.+..++...++
T Consensus 38 ~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (203)
T cd00268 38 DVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK 117 (203)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc
Confidence 445555555446543 455555433310 34568999999999888877666443 2378899999988766543332
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCC-C-cCcCCCCCCCCCEEE
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-P-LLSSGESAISARVLI 154 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~-~~~rGlDi~~v~~VI 154 (187)
. ..+++|+|...+ . +...-.++.+++++|
T Consensus 118 ---~------------------------~~~iiv~T~~~l~~~l~~~~~~~~~l~~lI 148 (203)
T cd00268 118 ---R------------------------GPHIVVATPGRLLDLLERGKLDLSKVKYLV 148 (203)
T ss_pred ---C------------------------CCCEEEEChHHHHHHHHcCCCChhhCCEEE
Confidence 2 278999995210 0 012235667777766
No 174
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.78 E-value=0.71 Score=34.81 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCC--CCEEEEecCC
Q 029806 91 TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELP 159 (187)
Q Consensus 91 ~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~--v~~VI~yd~P 159 (187)
.+...++++|+... +. + ..+|+++.-| .+++|+|+++ +++||...+|
T Consensus 31 ~~~~~~l~~f~~~~------------------~~-~-g~iL~~v~~G--~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 31 GETEELLEKYSAAC------------------EA-R-GALLLAVARG--KVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred chHHHHHHHHHHhc------------------CC-C-CEEEEEEeCC--eeecceecCCCccEEEEEEecC
Confidence 35578999999853 00 0 2467666421 1589999998 6789888877
No 175
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=91.14 E-value=1.2 Score=39.73 Aligned_cols=102 Identities=20% Similarity=0.213 Sum_probs=64.8
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHH
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
..+..+...-|... +.-++..+.. .....+++|.|+|+.-+..+++.+... ..+.+..++|+.+...+...+
T Consensus 44 vi~~a~TGsGKT~a~~lpil~~l~~-~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l-- 120 (460)
T PRK11776 44 VIAQAKTGSGKTAAFGLGLLQKLDV-KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL-- 120 (460)
T ss_pred EEEECCCCCcHHHHHHHHHHHHhhh-ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh--
Confidence 44444444446643 4455555332 223457999999999998888777643 136899999999887655433
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCC-cCc-CCCCCCCCCEEE
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LLS-SGESAISARVLI 154 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~-~~~-rGlDi~~v~~VI 154 (187)
+.+ .+|+|+|+--+. ++. ..+++.++++||
T Consensus 121 -~~~------------------------~~IvV~Tp~rl~~~l~~~~~~l~~l~~lV 152 (460)
T PRK11776 121 -EHG------------------------AHIIVGTPGRILDHLRKGTLDLDALNTLV 152 (460)
T ss_pred -cCC------------------------CCEEEEChHHHHHHHHcCCccHHHCCEEE
Confidence 343 789999943100 023 357788888877
No 176
>PRK14701 reverse gyrase; Provisional
Probab=90.90 E-value=0.76 Score=47.48 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=52.4
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccC-----CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLA-----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 126 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~-----~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (187)
.+.+++|.++|+.-+..+.+.|...+ .+.+..+||+++.+++.+.++.++.|+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~---------------------- 178 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD---------------------- 178 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC----------------------
Confidence 35689999999999988888887631 267889999999999999999999874
Q ss_pred ceeEEEEecC
Q 029806 127 KSHMIVVTDA 136 (187)
Q Consensus 127 ~~~iLv~Td~ 136 (187)
.+|||+|+-
T Consensus 179 -~dILV~TPg 187 (1638)
T PRK14701 179 -FDILVTTAQ 187 (1638)
T ss_pred -CCEEEECCc
Confidence 889999986
No 177
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.80 E-value=1.5 Score=41.08 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=61.4
Q ss_pred EEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHHHh
Q 029806 27 VAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFR 101 (187)
Q Consensus 27 ~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~Fr 101 (187)
+..+...-|... +..++..+.. .....++||.|+++.-+..+++.+... .++.+..+||+.+.+.+...+ +
T Consensus 48 ~~ApTGsGKT~af~lpll~~l~~-~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~ 123 (629)
T PRK11634 48 GMAQTGSGKTAAFSLPLLHNLDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R 123 (629)
T ss_pred EEcCCCCcHHHHHHHHHHHHhhh-ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c
Confidence 333333336544 3445555332 234468999999998888887765432 237899999998776654433 3
Q ss_pred cccccccccccccCCCCCcCCCCCCceeEEEEecCCC-CcCcC-CCCCCCCCEEE
Q 029806 102 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-PLLSS-GESAISARVLI 154 (187)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~~~~r-GlDi~~v~~VI 154 (187)
.+ .+|+|+|+--+ ..+.+ .+++.++.+||
T Consensus 124 ~~------------------------~~IVVgTPgrl~d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 124 QG------------------------PQIVVGTPGRLLDHLKRGTLDLSKLSGLV 154 (629)
T ss_pred CC------------------------CCEEEECHHHHHHHHHcCCcchhhceEEE
Confidence 33 78999995200 00333 36788888766
No 178
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.18 E-value=1.9 Score=40.51 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=69.4
Q ss_pred CCCcEEEEeCChhhHH----HHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 029806 52 PGLPMIVCCSSRDELD----AVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~----~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (187)
.+.|+..-++|.--++ .+.++|...| |.+..|.|.+..+.|.+++++..+|+
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~----------------------- 365 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGE----------------------- 365 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCC-----------------------
Confidence 3578888898865554 4555666667 89999999999999999999999996
Q ss_pred eeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 128 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 128 ~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
.+++|.|-+ |+...+++.+.-+||-= =.||.|-.
T Consensus 366 ~~ivVGTHA---LiQd~V~F~~LgLVIiD--------EQHRFGV~ 399 (677)
T COG1200 366 IDIVVGTHA---LIQDKVEFHNLGLVIID--------EQHRFGVH 399 (677)
T ss_pred CCEEEEcch---hhhcceeecceeEEEEe--------ccccccHH
Confidence 999999998 57888999998887742 35677643
No 179
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=89.36 E-value=0.74 Score=31.29 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..++++||++-..+...+..|+..|+ .+..|.|+++
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHH
Confidence 4467899999987788888999999996 9999999974
No 180
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.28 E-value=2.7 Score=37.65 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=52.3
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
.+.+||.+++++-+......|...| +.+..++++.+..++..+++..+.+ +.++++
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~g-i~~~~l~~~~~~~~~~~i~~~~~~~-----------------------~~~il~ 106 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASG-IPATFLNSSQSKEQQKNVLTDLKDG-----------------------KIKLLY 106 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcC-----------------------CCCEEE
Confidence 4689999999998888888888888 8999999999999999999999877 388888
Q ss_pred EecC
Q 029806 133 VTDA 136 (187)
Q Consensus 133 ~Td~ 136 (187)
+|+.
T Consensus 107 ~TPe 110 (470)
T TIGR00614 107 VTPE 110 (470)
T ss_pred ECHH
Confidence 8875
No 181
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=88.23 E-value=1.1 Score=29.60 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=33.6
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..++|++|++...+...+..|...|+.++..+.|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 466899999999889999999999998767888888874
No 182
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=88.20 E-value=3.1 Score=36.66 Aligned_cols=103 Identities=12% Similarity=0.165 Sum_probs=61.9
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhc---CCCCCCcEEEEeCChhhHHHHHHHHHcc---CCceEEEEeccCCHHHHHHHH
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVA---GRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~---~~~~~~k~IVF~~~~~~~~~l~~~L~~~---~~i~~~~lhg~~~~~eR~~~l 97 (187)
.++..+...-|... +.-++..+.. ......++||.++++.-+..+.+.+... ..+.+..++|+.+..++...+
T Consensus 41 ~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l 120 (434)
T PRK11192 41 VLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF 120 (434)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh
Confidence 44455544446543 3444443221 1223468999999998888776655432 227899999999887765443
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCC-C-cCcCCCCCCCCCEEE
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-P-LLSSGESAISARVLI 154 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~-~~~rGlDi~~v~~VI 154 (187)
..+ .+|+|+|+--+ . +....+++.++++||
T Consensus 121 ---~~~------------------------~~IlV~Tp~rl~~~~~~~~~~~~~v~~lV 152 (434)
T PRK11192 121 ---SEN------------------------QDIVVATPGRLLQYIKEENFDCRAVETLI 152 (434)
T ss_pred ---cCC------------------------CCEEEEChHHHHHHHHcCCcCcccCCEEE
Confidence 232 78999996200 0 023456777788766
No 183
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=87.89 E-value=4 Score=37.71 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=45.1
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccc
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~ 104 (187)
.+.++|.+++++-++.....|...| +.+..+|++++..++..+++....+.
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~g-i~~~~~~s~~~~~~~~~~~~~l~~~~ 103 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAG-VAAAYLNSTLSAKEQQDIEKALVNGE 103 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhCCC
Confidence 3678999999998888888888888 89999999999999999999998874
No 184
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=87.39 E-value=1.6 Score=43.87 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=57.6
Q ss_pred EccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---Cce---EEEEeccCCHHHHHHHHHHHh
Q 029806 28 AVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DIS---FSSLHSDLAETERTLILEEFR 101 (187)
Q Consensus 28 ~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~---~~~lhg~~~~~eR~~~l~~Fr 101 (187)
..+...-|..+..-+...+. ..+.+++|.++|+.-+..+++.+.... ++. +..+||+++..+|...++.++
T Consensus 99 ~ApTGsGKT~f~l~~~~~l~---~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~ 175 (1171)
T TIGR01054 99 IAPTGVGKTTFGLAMSLFLA---KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIE 175 (1171)
T ss_pred ECCCCCCHHHHHHHHHHHHH---hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHh
Confidence 33444446654333332221 235789999999999988888776542 133 335899999999999999999
Q ss_pred cccccccccccccCCCCCcCCCCCCceeEEEEecC
Q 029806 102 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDA 136 (187)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~ 136 (187)
++. .+|+|+|+-
T Consensus 176 ~~~-----------------------~dIlV~Tp~ 187 (1171)
T TIGR01054 176 NGD-----------------------FDILITTTM 187 (1171)
T ss_pred cCC-----------------------CCEEEECHH
Confidence 874 889999986
No 185
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=87.11 E-value=4.2 Score=40.53 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=67.6
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 126 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (187)
..++|+.|.++|.--++..++.|+.+ + |++..|.+=.+.+|..++++..++|
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G----------------------- 696 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEG----------------------- 696 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcC-----------------------
Confidence 35699999999998888877777654 5 8999999999999999999999999
Q ss_pred ceeEEEEecCCCCcCcCCCCCCCCCEEEE
Q 029806 127 KSHMIVVTDACLPLLSSGESAISARVLIN 155 (187)
Q Consensus 127 ~~~iLv~Td~~~~~~~rGlDi~~v~~VI~ 155 (187)
+++|+|.|-- +++.++-+.|.-++|.
T Consensus 697 ~vDIvIGTHr---LL~kdv~FkdLGLlII 722 (1139)
T COG1197 697 KVDIVIGTHR---LLSKDVKFKDLGLLII 722 (1139)
T ss_pred CccEEEechH---hhCCCcEEecCCeEEE
Confidence 4999999986 5888899999988773
No 186
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.61 E-value=7.1 Score=36.11 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=79.5
Q ss_pred chHHHHHHH-HHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccc
Q 029806 33 QFKMETLVE-LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (187)
Q Consensus 33 ~~Kl~~L~~-ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~ 111 (187)
+.++..+.+ ++-.+. ......++|+.++--..-++-.++.+.. +....+|--.+...-.+.-+-|-.|
T Consensus 533 D~RFkyFv~~ImPq~~--k~t~s~~LiyIPSYfDFVRvRNy~K~e~-i~F~~i~EYssk~~vsRAR~lF~qg-------- 601 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLI--KRTESGILIYIPSYFDFVRVRNYMKKEE-ISFVMINEYSSKSKVSRARELFFQG-------- 601 (698)
T ss_pred hHHHHHHHHhhchhhc--ccccCceEEEecchhhHHHHHHHhhhhh-cchHHHhhhhhHhhhhHHHHHHHhc--------
Confidence 446666554 333322 2345678999999988889999998876 6777776555555545556668777
Q ss_pred cccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHH---HHhhhhc
Q 029806 112 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETY---IRRMTTC 172 (187)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y---~~R~GR~ 172 (187)
+..+|+-|+=. -.-|--++.+|.-||.|.+|..+.=| +..++|+
T Consensus 602 ---------------r~~vlLyTER~--hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~ 648 (698)
T KOG2340|consen 602 ---------------RKSVLLYTERA--HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKT 648 (698)
T ss_pred ---------------CceEEEEehhh--hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhh
Confidence 47788888751 13466789999999999999998666 5567777
No 187
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=86.51 E-value=1.6 Score=29.88 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=32.2
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..++|++|++-......+.+|...|+-++..|.|+|.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 456789999999888888899998888546888999873
No 188
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=86.31 E-value=2.7 Score=28.44 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=32.8
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..+++|+|++-..+...+..|...|+-++..+.|++.
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 456899999999999999999999998656888888863
No 189
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=86.01 E-value=1.8 Score=40.02 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=38.7
Q ss_pred EEEEeCChhhHHHHHHHHHcc---CCceEEEEeccCCHHHHHHHHHH
Q 029806 56 MIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 56 ~IVF~~~~~~~~~l~~~L~~~---~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
.+||++|+.-+..+.+.|... ..|.+..|.|+|..+.+++++++
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~ 312 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ 312 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc
Confidence 899999999999999988654 23899999999999999988887
No 190
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=85.67 E-value=1.6 Score=29.12 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=33.1
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..++||||.+...+..++..|...|+-.+..|.|++.
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 566899999999889999999999998644888999873
No 191
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=85.39 E-value=1.8 Score=29.73 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=31.7
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..+++++|++-..+...+..|.+.|+-.+..+.|++
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~ 89 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGL 89 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCH
Confidence 44689999999988888999999888854688899986
No 192
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=84.68 E-value=1.6 Score=30.15 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=31.9
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+..+++++|++-.++...+.+|.+.|+-++..|.|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 46799999999888888899999888546888999864
No 193
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=84.38 E-value=1.7 Score=29.96 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=32.3
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+.++++++|.+-.+....+..|...|+ .+..|.|++.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~-~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGY-DVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCc-eeEEeCCcHH
Confidence 3567899999998888999999999995 7888999874
No 194
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=84.19 E-value=1.5 Score=30.36 Aligned_cols=39 Identities=8% Similarity=0.139 Sum_probs=31.3
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..+++|+|.+-.+....+.+|...|+-++..|.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 356789999998778888888998888535888988864
No 195
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.09 E-value=2.9 Score=38.64 Aligned_cols=75 Identities=9% Similarity=0.163 Sum_probs=50.2
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
..++||.++++.-+..+.+.+...+ .+.+..+||+.+...+...++ .+ .+
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~---~~------------------------~d 136 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ---QG------------------------VD 136 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh---CC------------------------CC
Confidence 3689999999999988877665432 278999999998776654442 22 78
Q ss_pred EEEEecCCC-CcCcC--CCCCCCCCEEE
Q 029806 130 MIVVTDACL-PLLSS--GESAISARVLI 154 (187)
Q Consensus 130 iLv~Td~~~-~~~~r--GlDi~~v~~VI 154 (187)
|+|+|.--+ .++.+ .+++..+.++|
T Consensus 137 IiV~TP~rL~~~l~~~~~~~l~~v~~lV 164 (572)
T PRK04537 137 VIIATPGRLIDYVKQHKVVSLHACEICV 164 (572)
T ss_pred EEEECHHHHHHHHHhccccchhheeeeE
Confidence 999995210 00222 35666677655
No 196
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=84.08 E-value=3.2 Score=29.38 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
+.+..++..+. ..+..++|+||++-..+...+..|...|+-++..+.|++
T Consensus 64 ~~~~~~~~~~~--~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 64 EELRALFAALG--ITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHHHcC--CCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 34445555421 235689999999988888889999988853577888876
No 197
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=83.96 E-value=3.5 Score=28.96 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=30.6
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCce-EEEEeccCC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLA 89 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~-~~~lhg~~~ 89 (187)
+..+++|||.+-.+....+..|...|+-+ +..|.|+|+
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 45789999998877777888998888534 788999974
No 198
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=83.15 E-value=0.89 Score=43.72 Aligned_cols=45 Identities=27% Similarity=0.345 Sum_probs=37.6
Q ss_pred eeEEEEecCCCCcCcCCCCCCCCCEE--------EEecCCCChhHHHHhhhhccCCC
Q 029806 128 SHMIVVTDACLPLLSSGESAISARVL--------INYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 128 ~~iLv~Td~~~~~~~rGlDi~~v~~V--------I~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
..|-|.+++ ++-||-++.=+-| |-+++||+.+.-+|+.||+-|..
T Consensus 858 K~vAIISEA----aSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSN 910 (1300)
T KOG1513|consen 858 KLVAIISEA----ASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSN 910 (1300)
T ss_pred ceeeeeehh----hccCceeecchhhhhhhheEEEEEECCcchhHHHHHhccccccc
Confidence 778888899 9999998875544 45789999999999999996653
No 199
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=82.99 E-value=2.2 Score=29.12 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCCcEEEEeCC--hhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 52 PGLPMIVCCSS--RDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 52 ~~~k~IVF~~~--~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+..+++++|.+ +..+...+..|...|+-++..+.|++.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 36789999998 344677788888888657888999874
No 200
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=82.31 E-value=12 Score=33.29 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=49.9
Q ss_pred CcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 54 LPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
.++||.++++.-+..+.+.+... + +.+..++|+.+..+... .++. ..+
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~---~l~~------------------------~~~ 127 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMM---KLRG------------------------GVD 127 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCC-CEEEEEECCcCHHHHHH---HHcC------------------------CCc
Confidence 47999999999888777766543 4 68889999988766432 2333 378
Q ss_pred EEEEecCCCC--cCcCCCCCCCCCEEE
Q 029806 130 MIVVTDACLP--LLSSGESAISARVLI 154 (187)
Q Consensus 130 iLv~Td~~~~--~~~rGlDi~~v~~VI 154 (187)
|+|+|+--+- +....+++.++++||
T Consensus 128 IiV~TP~rL~~~~~~~~~~l~~v~~lV 154 (456)
T PRK10590 128 VLVATPGRLLDLEHQNAVKLDQVEILV 154 (456)
T ss_pred EEEEChHHHHHHHHcCCcccccceEEE
Confidence 9999962100 024456778888766
No 201
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.25 E-value=7.5 Score=34.58 Aligned_cols=64 Identities=8% Similarity=0.064 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHHhc
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRH 102 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~Fr~ 102 (187)
...++.++..+.. ......++|.++++.-+..+++.+...| ++.+..|-|+|+-. .+.++-+++
T Consensus 113 ~afaLPIl~~LL~-~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~--~q~~~L~kk 179 (476)
T KOG0330|consen 113 GAFALPILQRLLQ-EPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMM--LQANQLSKK 179 (476)
T ss_pred hhhHHHHHHHHHc-CCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHH--HHHHHhhcC
Confidence 4456666666555 3555789999999999998888877663 37999999998654 344555555
No 202
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.19 E-value=6.1 Score=34.73 Aligned_cols=75 Identities=5% Similarity=0.031 Sum_probs=50.3
Q ss_pred CCcEEEEeCChhhHHHHHHHHHc----cCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~----~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (187)
..++||.++++.-+..+.+.+.. .+ +.+..++|+.+....... +..+ .
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~---l~~~------------------------~ 134 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATG-LKLGLAYGGDGYDKQLKV---LESG------------------------V 134 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHH---hcCC------------------------C
Confidence 36799999999998887665543 24 789999999876554432 3333 7
Q ss_pred eEEEEecCCCC-cC-cCCCCCCCCCEEEE
Q 029806 129 HMIVVTDACLP-LL-SSGESAISARVLIN 155 (187)
Q Consensus 129 ~iLv~Td~~~~-~~-~rGlDi~~v~~VI~ 155 (187)
+|+|+|+--+- ++ ...+++.++.++|-
T Consensus 135 ~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 135 DILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred CEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 89999973100 01 23567778887763
No 203
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=81.84 E-value=3.5 Score=33.92 Aligned_cols=41 Identities=15% Similarity=0.029 Sum_probs=35.9
Q ss_pred ceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 127 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 127 ~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
...|+|.=+. ++||+.+++..+.....-|.+.+++.||. |-
T Consensus 135 ~~~I~VGGn~----LsRGlTleGL~vsYf~R~s~~~DTL~Qmg-Rw 175 (239)
T PF10593_consen 135 LNVIAVGGNK----LSRGLTLEGLTVSYFLRNSKQYDTLMQMG-RW 175 (239)
T ss_pred ceEEEECCcc----ccCceeECCcEEEEecCCCchHHHHHHHh-hc
Confidence 4889999898 99999999999999999999888888875 65
No 204
>PRK13766 Hef nuclease; Provisional
Probab=81.51 E-value=16 Score=34.78 Aligned_cols=101 Identities=12% Similarity=0.160 Sum_probs=60.9
Q ss_pred EEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCc---eEEEEeccCCHHHHHHHHHHHh
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI---SFSSLHSDLAETERTLILEEFR 101 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i---~~~~lhg~~~~~eR~~~l~~Fr 101 (187)
..+..+...-|.....-++..... .+.+++||.|+++.-+++..+.+.....+ .+..++|+.+..+|...+ .
T Consensus 32 ~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~---~ 106 (773)
T PRK13766 32 TLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELW---E 106 (773)
T ss_pred eEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHH---h
Confidence 344444444466543333333221 45689999999998887777766653213 788899999988876443 2
Q ss_pred cccccccccccccCCCCCcCCCCCCceeEEEEecCCC--CcCcCCCCCCCCCEEEE
Q 029806 102 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL--PLLSSGESAISARVLIN 155 (187)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~--~~~~rGlDi~~v~~VI~ 155 (187)
. .+|+++|.--+ .+...-+++.++++||-
T Consensus 107 ~-------------------------~~iiv~T~~~l~~~l~~~~~~~~~~~liVv 137 (773)
T PRK13766 107 K-------------------------AKVIVATPQVIENDLIAGRISLEDVSLLIF 137 (773)
T ss_pred C-------------------------CCEEEECHHHHHHHHHcCCCChhhCcEEEE
Confidence 2 56888885200 00234456677777663
No 205
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=81.50 E-value=8.6 Score=36.80 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC--CceEEEEeccCCHHHHH
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERT 94 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~--~i~~~~lhg~~~~~eR~ 94 (187)
..++-++..+.. .+..++|+.+++++-+......|...+ ++.+..++|+.+.++|.
T Consensus 67 a~~LPiL~~l~~--~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~ 124 (742)
T TIGR03817 67 AYQLPVLSALAD--DPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERR 124 (742)
T ss_pred HHHHHHHHHHhh--CCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHH
Confidence 345555665433 356789999999999888888776642 37889999999877763
No 206
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=81.37 E-value=11 Score=37.91 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=49.8
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
.+.+||.+++++-+..-...|...| |.+..+.++++..++..++++++... +..++|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~G-I~Aa~L~s~~s~~eq~~ilr~l~s~~---------------------g~~~ILy 557 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQAN-IPAASLSAGMEWAEQLEILQELSSEY---------------------SKYKLLY 557 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCC-CeEEEEECCCCHHHHHHHHHHHHhcC---------------------CCCCEEE
Confidence 3689999999988875555666667 89999999999999999999887621 1489999
Q ss_pred EecC
Q 029806 133 VTDA 136 (187)
Q Consensus 133 ~Td~ 136 (187)
+|+.
T Consensus 558 vTPE 561 (1195)
T PLN03137 558 VTPE 561 (1195)
T ss_pred EChH
Confidence 9985
No 207
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=81.34 E-value=2.5 Score=29.28 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=31.6
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..++++||.+-..+...+..|...|+-++..+.|++.
T Consensus 64 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 64 SKDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 346799999999888888999999988545777888863
No 208
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=81.01 E-value=18 Score=30.72 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHHhcC--CCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHH
Q 029806 33 QFKMETLVELLHLVVAG--RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETE 92 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~--~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~e 92 (187)
..|+..|.+++..+... ...+.+++|.++..++.+.+...|...+ +..-.+.|.+-..+
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~-~~~kr~sg~~l~~~ 155 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKK-LNYKRYSGESLYDE 155 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSS-SEEEESSS--S--S
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCC-eeEEecCCCCCcCc
Confidence 44999999999986321 2455899999999999999999998877 68888888765444
No 209
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=80.96 E-value=4.4 Score=28.92 Aligned_cols=39 Identities=8% Similarity=-0.047 Sum_probs=31.4
Q ss_pred CCCCcEEEEeCC-hhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSS-RDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~-~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..++++||++ -..+...+..|...|+-++..+.|++.
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 456889999998 478888888898888545888889873
No 210
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=80.90 E-value=12 Score=34.91 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=44.8
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccc
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~ 104 (187)
.+.+||.+++++-+......|...| +.+..+++..+.+++..+++..+.+.
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~g-i~~~~~~s~~~~~~~~~~~~~~~~g~ 115 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANG-VAAACLNSTQTREQQLEVMAGCRTGQ 115 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcC-CcEEEEcCCCCHHHHHHHHHHHhCCC
Confidence 3679999999999888888888888 79999999999999999988888874
No 211
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=80.88 E-value=6.4 Score=29.62 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=32.0
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
+..+++|+|.+-..+...+..|...|+.++..|.|++
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~ 84 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGT 84 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcH
Confidence 4578999999988888888899988866899999996
No 212
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=80.44 E-value=16 Score=32.64 Aligned_cols=75 Identities=8% Similarity=0.146 Sum_probs=49.8
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (187)
..++||.+++++-+..+.+.+... + +.+..++|+.+..... +.+..+ ..
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~---~~~~~~-----------------------~~ 214 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTG-LNVMTFVGGMDFDKQL---KQLEAR-----------------------FC 214 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCC-CEEEEEEccCChHHHH---HHHhCC-----------------------CC
Confidence 468999999999998877766543 4 6888999998765443 344443 37
Q ss_pred eEEEEecCCC-CcC-cCCCCCCCCCEEE
Q 029806 129 HMIVVTDACL-PLL-SSGESAISARVLI 154 (187)
Q Consensus 129 ~iLv~Td~~~-~~~-~rGlDi~~v~~VI 154 (187)
+|+|+|.--+ .+. ...+.+.++++||
T Consensus 215 ~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 215 DILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred CEEEECHHHHHHHHHcCCcccccCceEE
Confidence 8999997410 001 2245666777765
No 213
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=79.26 E-value=3.2 Score=28.65 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=30.5
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
..+++++|.+-..+...+..|...|+-++..|.|+++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 4689999998778888888999888645788999873
No 214
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=79.15 E-value=2.9 Score=30.10 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=32.2
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCC-ceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~-i~~~~lhg~~ 88 (187)
.+..+++++|++-.++...+..|...|+ -++..+.|++
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~ 108 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGL 108 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchH
Confidence 4568999999998888889999999994 3689999987
No 215
>PTZ00110 helicase; Provisional
Probab=78.92 E-value=13 Score=34.23 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=49.7
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
...+||.++|++-+..+.+.+.+.+ .+.+..++|+.+..... ...+.+ .+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~---~~l~~~------------------------~~ 255 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQI---YALRRG------------------------VE 255 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHH---HHHHcC------------------------CC
Confidence 4568999999999888877776542 26788899998765543 334444 78
Q ss_pred EEEEecCCC-CcCcCC-CCCCCCCEEE
Q 029806 130 MIVVTDACL-PLLSSG-ESAISARVLI 154 (187)
Q Consensus 130 iLv~Td~~~-~~~~rG-lDi~~v~~VI 154 (187)
|+|+|+--+ .++.++ +++..+++||
T Consensus 256 IlVaTPgrL~d~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 256 ILIACPGRLIDFLESNVTNLRRVTYLV 282 (545)
T ss_pred EEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 999996100 003333 5667777765
No 216
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=78.80 E-value=5.5 Score=28.97 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=30.5
Q ss_pred CCCCcEEEEeC-ChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~-~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..++||||+ +-.+....+..|...|+ ++..|.|+++
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~ 122 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYK 122 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHH
Confidence 56789999997 45667777788888895 8999999974
No 217
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=78.56 E-value=13 Score=35.92 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=44.9
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeE
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 130 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 130 (187)
+..++.+|.|++-.-=.|+.+.-+-.+.+++..+||. +.||.++-.++.++. .+.+|
T Consensus 446 g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~---------------------~~ydV 502 (941)
T KOG0389|consen 446 GNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNK---------------------DDYDV 502 (941)
T ss_pred CCCCCcEEEecchhHHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccC---------------------CCccE
Confidence 4467888889885333344433333355789999996 599999999998873 36999
Q ss_pred EEEecC
Q 029806 131 IVVTDA 136 (187)
Q Consensus 131 Lv~Td~ 136 (187)
||+|=-
T Consensus 503 llTTY~ 508 (941)
T KOG0389|consen 503 LLTTYN 508 (941)
T ss_pred EEEEee
Confidence 998854
No 218
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=78.50 E-value=2.2 Score=29.28 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=30.9
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..+++|||.+-..+...+..|...|+-++..+.|++.
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 356899999998777888889998888534778888863
No 219
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=77.83 E-value=2 Score=40.72 Aligned_cols=77 Identities=14% Similarity=0.285 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
|+.+|...++.+. ..+.+++||..-....+-+..++...+ ....+.|.....+|+..+.+|....
T Consensus 616 k~~~l~~~~~~l~---~~ghrvl~~~q~~~~ldlled~~~~~~--~~~r~dG~~~~~~rq~ai~~~n~~~---------- 680 (696)
T KOG0383|consen 616 KLTLLLKMLKKLK---SSGHRVLIFSQMIHMLDLLEDYLTYEG--KYERIDGPITGPERQAAIDRFNAPG---------- 680 (696)
T ss_pred HHHHHHHHHHHHH---hcchhhHHHHHHHHHHHHhHHHHhccC--cceeccCCccchhhhhhccccCCCC----------
Confidence 7777877777743 467899999999999999999998877 7889999999999999999999653
Q ss_pred CCCCCcCCCCCCceeEEEEecC
Q 029806 115 SGDESETGKDEHKSHMIVVTDA 136 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~ 136 (187)
+...-.|++|.+
T Consensus 681 ----------~~~~cfllstra 692 (696)
T KOG0383|consen 681 ----------SNQFCFLLSTRA 692 (696)
T ss_pred ----------ccceEEEeeccc
Confidence 235788999988
No 220
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=77.43 E-value=2.4 Score=41.36 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc------CCceEEEEeccCCHHHHHHHHHHHhcccccccc
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 109 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~------~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~ 109 (187)
..++..++..+.. .+-.+-++||-.-=..+-.|+.+|-.. ....++.+|+....++..++.+....+
T Consensus 627 f~l~Eal~~~i~s-~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~g------ 699 (1282)
T KOG0921|consen 627 FGLIEALLNDIAS-RNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEG------ 699 (1282)
T ss_pred hHHHHHHHhhhcc-cCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccc------
Confidence 3444444444333 444578899998888888888877543 224788999999888888887777766
Q ss_pred cccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecC------------------CCChhHHHHhhhh
Q 029806 110 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIRRMTT 171 (187)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~------------------P~~~~~y~~R~GR 171 (187)
..+++++|.+ +.--+.+.++..||.-+. -.+.....||-||
T Consensus 700 -----------------v~kii~stni----aetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr 758 (1282)
T KOG0921|consen 700 -----------------VTKIILSTNI----AETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGR 758 (1282)
T ss_pred -----------------ccccccccce----eeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhccc
Confidence 4788888888 888888888776665442 2256778899999
Q ss_pred ccCC-CCeEE
Q 029806 172 CLAA-GTSFS 180 (187)
Q Consensus 172 ~~r~-~g~~i 180 (187)
++|. .|.+.
T Consensus 759 ~grvR~G~~f 768 (1282)
T KOG0921|consen 759 AGRVRPGFCF 768 (1282)
T ss_pred Cceecccccc
Confidence 8554 34443
No 221
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=77.38 E-value=4.1 Score=27.82 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=29.9
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
..++++||.+-.+....+.+|...|+ .+..|.|+++
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~-~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGW-EVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCC-EEEEecCcHH
Confidence 46899999998788888889988895 6777888873
No 222
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=76.70 E-value=7.4 Score=29.27 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=41.6
Q ss_pred EEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEec
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS 86 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg 86 (187)
||.. .... ++..+++|+++... .+.+++|.|.+...++.|-+.|-.... ..+.=|+
T Consensus 6 FY~l-~~~~-~~~~~c~L~~ka~~---~g~rv~I~~~d~~~a~~lD~~LW~~~~-~sFlPH~ 61 (142)
T PRK05728 6 FYHL-TLSA-LEALLCELAEKALR---AGWRVLVQCEDEEQAEALDEALWTFRD-ESFLPHG 61 (142)
T ss_pred EEec-Cchh-HHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHHHHhcCCCC-CcCCCCC
Confidence 4444 3444 89999999988443 579999999999999999999977642 3444454
No 223
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=76.42 E-value=4.6 Score=28.93 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=31.6
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+..++|++|++-.++...+..|...|+-++..+.|++.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 46789999999888888999999999656777888874
No 224
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=75.98 E-value=5.4 Score=28.09 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=30.5
Q ss_pred CCCCcEEEEeCChh--hHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRD--ELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~--~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..+++++|++.. .+...+..|...|+ .+..|.|++.
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~-~v~~l~GG~~ 101 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGF-PVKEMIGGLD 101 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCC-eEEEecCCHH
Confidence 45689999999753 67888889988895 7888999873
No 225
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=75.63 E-value=23 Score=24.35 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=43.6
Q ss_pred cCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC--CceEEEEeccCCHHHHH
Q 029806 30 DRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERT 94 (187)
Q Consensus 30 ~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~--~i~~~~lhg~~~~~eR~ 94 (187)
+...-|...+..++..... ....++++|+|++...++++.+.+.... .+.+..+++........
T Consensus 8 ~~G~GKT~~~~~~~~~~~~-~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 8 PTGSGKTLAALLPILELLD-SLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCCCchhHHHHHHHHHHHh-cccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 3334476666666665333 2356899999999999998888776554 26788888876554444
No 226
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=74.98 E-value=17 Score=35.52 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=49.3
Q ss_pred ceEEEEccCcchHHH-HHHHHHHHHhcCCCCCCcEEEEeCChh----hHHHHHHHHHccC-CceEEEEeccCCHHHHH
Q 029806 23 RHFYVAVDRLQFKME-TLVELLHLVVAGRRPGLPMIVCCSSRD----ELDAVCSAVSNLA-DISFSSLHSDLAETERT 94 (187)
Q Consensus 23 ~~~~~~~~~~~~Kl~-~L~~ll~~~~~~~~~~~k~IVF~~~~~----~~~~l~~~L~~~~-~i~~~~lhg~~~~~eR~ 94 (187)
++..+......-|.. .+.-++..+.. .+..+.|++.++++ +++++.+++...+ .+.+..++|+.+.++|+
T Consensus 86 ~~vvVtTgTgSGKTe~FllPIld~~l~--~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~ 161 (851)
T COG1205 86 RNVVVTTGTGSGKTESFLLPILDHLLR--DPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR 161 (851)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhh--CcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH
Confidence 455555554444554 45566666554 45568899999874 5567777777766 47899999999999987
No 227
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=73.27 E-value=6.6 Score=39.58 Aligned_cols=111 Identities=13% Similarity=0.018 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
|+......+..+.+ .+...++|+|+.-....+.+...+...+ |+...--+ .+.-...+..|+.=
T Consensus 1204 kI~~v~~~il~iK~-k~~qekvIvfsqws~~ldV~e~~~~~N~-I~~~~~~~---t~d~~dc~~~fk~I----------- 1267 (1394)
T KOG0298|consen 1204 KIDSVVIAILYIKF-KNEQEKVIVFSQWSVVLDVKELRYLMNL-IKKQLDGE---TEDFDDCIICFKSI----------- 1267 (1394)
T ss_pred CchhHHHHHHHHhc-cCcCceEEEEEehHHHHHHHHHHHHhhh-hHhhhccC---Ccchhhhhhhcccc-----------
Confidence 67776666555444 5566899999998888888888877665 44433322 23334566677663
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCe
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTS 178 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~ 178 (187)
--.|+-+.- .+-|+++-++.||+..++--++..=.|-+||+-|.|..
T Consensus 1268 -------------~clll~~~~----~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1268 -------------DCLLLFVSK----GSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred -------------eEEEEEecc----CcccccHHhhhhhheeccccCchHHHhhhhhhhhcccc
Confidence 335555666 89999999999999999989999999999998555433
No 228
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=73.06 E-value=21 Score=27.13 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=40.5
Q ss_pred EEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEecc
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD 87 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~ 87 (187)
||...++. -+..++.|+++-. ..+.|++|-|.+..+.+.|-+.|-.... ..+.=|+.
T Consensus 6 FY~l~~~~--~~~~~c~L~~k~~---~~G~rvlI~~~d~~q~e~LD~~LWt~~~-~sFiPH~~ 62 (144)
T COG2927 6 FYLLSEST--LLAAACRLAEKAW---RSGWRVLIQCEDEAQAEALDEHLWTFSA-ESFIPHNL 62 (144)
T ss_pred EEEecchh--HHHHHHHHHHHHH---HcCCeEEEEeCCHHHHHHHHHhhhccch-hcccCCcc
Confidence 45444433 2448899998733 4679999999999999999999977652 45555543
No 229
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=73.04 E-value=10 Score=28.16 Aligned_cols=50 Identities=6% Similarity=-0.075 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeCC---hhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 38 TLVELLHLVVAGRRPGLPMIVCCSS---RDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 38 ~L~~ll~~~~~~~~~~~k~IVF~~~---~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+.+++..+- -.+..++||||++ -..+-.+.-.|...|+-++..|.|+++
T Consensus 82 ~~~~~~~~~G--I~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAKG--IDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHcC--CCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 5666666522 3567899999975 344555566667677546888998864
No 230
>PLN02160 thiosulfate sulfurtransferase
Probab=72.95 E-value=6.2 Score=29.31 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=32.3
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..++|++|.+-.+....+..|.+.|+-.+..+.|++
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~ 116 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGY 116 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcH
Confidence 34578999999999999999999998864678888886
No 231
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=72.60 E-value=12 Score=35.04 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=43.9
Q ss_pred CcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccc
Q 029806 54 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~ 104 (187)
+-+||..+=.+-.+.=.+.|...| |.+..+++.++.+||..+++++..|.
T Consensus 58 G~TLVVSPLiSLM~DQV~~l~~~G-i~A~~lnS~l~~~e~~~v~~~l~~g~ 107 (590)
T COG0514 58 GLTLVVSPLISLMKDQVDQLEAAG-IRAAYLNSTLSREERQQVLNQLKSGQ 107 (590)
T ss_pred CCEEEECchHHHHHHHHHHHHHcC-ceeehhhcccCHHHHHHHHHHHhcCc
Confidence 678888888777777777788888 89999999999999999999999985
No 232
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=72.01 E-value=13 Score=25.91 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=31.4
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
....+++|+|.+-..+...+..|...|+-.+..+.|++.
T Consensus 56 ~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 56 DFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 346789999998888888888999988645788999873
No 233
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=71.73 E-value=14 Score=27.61 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEecc
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD 87 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~ 87 (187)
...+++|+++... .+.+++|+|.+...++.|-+.|-.... ..+.=|+-
T Consensus 15 ~~~~c~L~~k~~~---~g~rv~V~~~d~~~a~~lD~~LW~~~~-~sFlPH~~ 62 (137)
T PF04364_consen 15 ERFACRLAEKAYR---QGQRVLVLCPDEEQAEALDELLWTFSP-DSFLPHGL 62 (137)
T ss_dssp HHHHHHHHHHHHH---TT--EEEE-SSHHHHHHHHHHTTTSST-T----EEE
T ss_pred HHHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHCCCC-CCCCCCcc
Confidence 6889999988554 468999999999999999999987652 45555543
No 234
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=71.54 E-value=7.3 Score=28.22 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=29.7
Q ss_pred CCCCcEEEEeC-ChhhHHHHHHHHHcc------------CCceEEEEeccCC
Q 029806 51 RPGLPMIVCCS-SRDELDAVCSAVSNL------------ADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~-~~~~~~~l~~~L~~~------------~~i~~~~lhg~~~ 89 (187)
.+..++|++|. +-.+....+.+|... |+.++..|.|++.
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 34678999996 777777777788763 6567999999874
No 235
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=71.10 E-value=24 Score=36.60 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=53.3
Q ss_pred CCcEEEEeCChhhHHHHHHHHHc----------------cCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCC
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSN----------------LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 116 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~----------------~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~ 116 (187)
+.++|+.++++.-+..+.+.|+. .+ +.+...||+.+..+|...++ +
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~-i~V~vrtGDt~~~eR~rll~---~-------------- 98 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVN-LRVGIRTGDTPAQERSKLTR---N-------------- 98 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCc-eEEEEEECCCCHHHHHHHhc---C--------------
Confidence 47899999999888777766542 23 78999999999999875433 2
Q ss_pred CCCcCCCCCCceeEEEEecCCCCcC--cCC-CCCCCCCEEEE
Q 029806 117 DESETGKDEHKSHMIVVTDACLPLL--SSG-ESAISARVLIN 155 (187)
Q Consensus 117 ~~~~~~~~~~~~~iLv~Td~~~~~~--~rG-lDi~~v~~VI~ 155 (187)
..+|||+|+-.+.++ .++ ..+.++++||-
T Consensus 99 ----------ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 99 ----------PPDILITTPESLYLMLTSRARETLRGVETVII 130 (1490)
T ss_pred ----------CCCEEEecHHHHHHHHhhhhhhhhccCCEEEE
Confidence 278999998643322 222 35788888773
No 236
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=70.08 E-value=16 Score=24.91 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=27.3
Q ss_pred CCCCcEEEEeCChhhHHHHHHH-----HHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSA-----VSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~-----L~~~~~i~~~~lhg~~~ 89 (187)
.....+|+||++.......+.. |...|+-++..|.|++.
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 4556789999665555555554 77777548999999863
No 237
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=69.92 E-value=19 Score=27.66 Aligned_cols=54 Identities=7% Similarity=0.087 Sum_probs=41.1
Q ss_pred EccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEec
Q 029806 28 AVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS 86 (187)
Q Consensus 28 ~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg 86 (187)
.+.... ++..+++|+++... .+.+++|.|.+..+++.|-+.|-.... ..+.=|+
T Consensus 8 hL~~~~-~~~~acrL~~Ka~~---~G~rv~I~~~d~~~~~~LD~~LWtf~~-~SFlPH~ 61 (154)
T PRK06646 8 QTSDEL-LLKSILLLIEKCYY---SDLKSVILTADADQQEMLNKNLWTYSR-KQFIPHG 61 (154)
T ss_pred EeCCCh-HHHHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHHHhcCCCC-CCCCCCC
Confidence 334555 99999999988543 478999999999999999999976642 4444454
No 238
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=68.72 E-value=16 Score=33.73 Aligned_cols=71 Identities=10% Similarity=0.137 Sum_probs=47.4
Q ss_pred EEEEeCChhhHHHHH---HHHHc-cCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEE
Q 029806 56 MIVCCSSRDELDAVC---SAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 131 (187)
Q Consensus 56 ~IVF~~~~~~~~~l~---~~L~~-~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 131 (187)
.+|.|+|+.-+..+. +.|.+ .| ++++.+||+++.-++..-|+ .| ..++
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~yg-l~~v~~ygGgsk~eQ~k~Lk---~g------------------------~Eiv 350 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKAYG-LRVVAVYGGGSKWEQSKELK---EG------------------------AEIV 350 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhcc-ceEEEeecCCcHHHHHHhhh---cC------------------------CeEE
Confidence 456688887766554 44422 25 89999999999988776665 44 7789
Q ss_pred EEecCCCC--cCcCCCCCCCCCEEE
Q 029806 132 VVTDACLP--LLSSGESAISARVLI 154 (187)
Q Consensus 132 v~Td~~~~--~~~rGlDi~~v~~VI 154 (187)
|||+--|- .--.++|+..|++.|
T Consensus 351 VaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 351 VATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred EechHHHHHHHHhhcccceeeeEEE
Confidence 99973000 022467788888755
No 239
>PRK09401 reverse gyrase; Reviewed
Probab=68.66 E-value=13 Score=37.52 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=46.3
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccC---CceEEEE--eccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSL--HSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 126 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~l--hg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (187)
.+.+++|.++|+.-+..+.+.+...+ .+.+..+ |++++..++.+..+.++.+.
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~---------------------- 179 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD---------------------- 179 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCC----------------------
Confidence 35789999999999998888887653 1344444 45566788888888888774
Q ss_pred ceeEEEEec
Q 029806 127 KSHMIVVTD 135 (187)
Q Consensus 127 ~~~iLv~Td 135 (187)
.+|+|+|.
T Consensus 180 -~~IlV~Tp 187 (1176)
T PRK09401 180 -FDILVTTS 187 (1176)
T ss_pred -CCEEEECH
Confidence 88999995
No 240
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=68.37 E-value=31 Score=33.43 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=39.8
Q ss_pred CCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 50 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 50 ~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
.+-.++.+|.|+--.--.|+.+.-+-.+.+++..+||+ .++|...++.+...
T Consensus 214 ~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~ 265 (971)
T KOG0385|consen 214 KGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLP 265 (971)
T ss_pred cCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhcc
Confidence 34468999999876555566655555566899999997 69999999988775
No 241
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=67.98 E-value=8.7 Score=29.46 Aligned_cols=39 Identities=5% Similarity=-0.041 Sum_probs=30.1
Q ss_pred CCCCcEEEEeCChh-hHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~-~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..++|+||.+-. .....+..|...|+-++..|.|++.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 35689999999753 5666777888889767888999863
No 242
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=67.44 E-value=23 Score=29.85 Aligned_cols=61 Identities=10% Similarity=0.045 Sum_probs=39.4
Q ss_pred cEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEe
Q 029806 55 PMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVT 134 (187)
Q Consensus 55 k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~T 134 (187)
--+|+|...+....|-..+.-.. +...+|.--..+....+++....| ..|.+.+
T Consensus 26 ~d~i~~EDTR~t~kLL~~~~I~~--~~~~~~~hn~~~~~~~l~~~l~~g------------------------~~valvS 79 (276)
T TIGR00096 26 VDLFAEEDTRTSKLLLHLGIIAT--PKAFHIDNEFQEKQNLLAAKLEIG------------------------NNIAVSS 79 (276)
T ss_pred CCEEEecCchhHHHHHHhcCCCC--ceEEEecccHhHHHHHHHHHHHcC------------------------CcEEEEe
Confidence 44788999888888877774432 455555443334444455556665 4599999
Q ss_pred cCCCCcC
Q 029806 135 DACLPLL 141 (187)
Q Consensus 135 d~~~~~~ 141 (187)
|+|+|..
T Consensus 80 DAG~P~I 86 (276)
T TIGR00096 80 DAGPPLI 86 (276)
T ss_pred cCCCCCc
Confidence 9966653
No 243
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=67.16 E-value=18 Score=33.19 Aligned_cols=95 Identities=9% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
...+||-++|++-+..+++.+...+ .+++.+++|+.+...+. ++.++| ++
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~---~~l~~g------------------------vd 217 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQL---RDLERG------------------------VD 217 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHH---HHHhcC------------------------Cc
Confidence 5679999999999988888776542 25799999999877655 344555 88
Q ss_pred EEEEecCC-CCcCcCC-CCCCCCCEEE--------EecCCCChhHHHHhhhhccC
Q 029806 130 MIVVTDAC-LPLLSSG-ESAISARVLI--------NYELPTKKETYIRRMTTCLA 174 (187)
Q Consensus 130 iLv~Td~~-~~~~~rG-lDi~~v~~VI--------~yd~P~~~~~y~~R~GR~~r 174 (187)
|+|+|+-= +-++.+| +|+..+.++| ..++-..++..+.++.|.-+
T Consensus 218 iviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 218 VVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred EEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 99999630 0014444 6777788776 33455667777777777644
No 244
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=67.12 E-value=22 Score=25.14 Aligned_cols=36 Identities=8% Similarity=0.131 Sum_probs=28.1
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
...++++||++-..+...+..|...|+ ....+.|++
T Consensus 59 ~~~~IVlyC~~G~rS~~aa~~L~~~G~-~~v~~~GG~ 94 (104)
T PRK10287 59 KNDTVKLYCNAGRQSGQAKEILSEMGY-THAENAGGL 94 (104)
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCC-CeEEecCCH
Confidence 346799999998888888999988885 544556775
No 245
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=65.43 E-value=16 Score=30.34 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=31.7
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..++|+||++-.++..+...|...|+-.+..+.|++
T Consensus 229 ~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~ 266 (281)
T PRK11493 229 SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAW 266 (281)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCH
Confidence 45678999999998999999999888854588888886
No 246
>PRK01415 hypothetical protein; Validated
Probab=64.53 E-value=10 Score=31.39 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=33.8
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
...+++++||.+-.+++..+.+|.+.|+-++..|.|++.
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~ 207 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGIL 207 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHH
Confidence 456899999999999999999999999646888999973
No 247
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=64.50 E-value=76 Score=25.75 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=62.6
Q ss_pred CCCCcEEEEeCC------------hhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCC
Q 029806 51 RPGLPMIVCCSS------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 118 (187)
Q Consensus 51 ~~~~k~IVF~~~------------~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~ 118 (187)
.+.+.+||+.|. ...++.|++.|+++|+ .+ .++.+++..+-.+.+++|.+..
T Consensus 7 ~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF-~V-~~~~nlt~~~~~~~l~~f~~~~-------------- 70 (243)
T cd00032 7 KRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGY-EV-EVKNNLTAEEILEELKEFASPD-------------- 70 (243)
T ss_pred CCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCC-EE-EEeCCCCHHHHHHHHHHHHhcc--------------
Confidence 355778888774 3558999999999996 55 5688999999999999998621
Q ss_pred CcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEec-CCCChhHHHHhhh
Q 029806 119 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-LPTKKETYIRRMT 170 (187)
Q Consensus 119 ~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd-~P~~~~~y~~R~G 170 (187)
. .....+++. + ++-|.. +.++-.| -+-+.++.++...
T Consensus 71 ---~---~~~d~~v~~-~----~sHG~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 71 ---H---SDSDSFVCV-I----LSHGEE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred ---C---CCCCeeEEE-E----CCCCCC----CEEEEecCcEEEHHHHHHhhc
Confidence 0 123344433 4 677754 7777777 6666777777664
No 248
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=64.42 E-value=54 Score=24.03 Aligned_cols=119 Identities=8% Similarity=0.107 Sum_probs=70.2
Q ss_pred eEEEEccCcchHHHHHH-HHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHH-HHHHHHH
Q 029806 24 HFYVAVDRLQFKMETLV-ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAET-ERTLILE 98 (187)
Q Consensus 24 ~~~~~~~~~~~Kl~~L~-~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~-eR~~~l~ 98 (187)
+..+..+...-|-.... -++..+.. ....++||.++++.-++.+...+.+.. .+.+..+|++.+.. +....+
T Consensus 16 ~~li~aptGsGKT~~~~~~~l~~~~~--~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 92 (169)
T PF00270_consen 16 NVLISAPTGSGKTLAYILPALNRLQE--GKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL- 92 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH-
T ss_pred CEEEECCCCCccHHHHHHHHHhhhcc--CCCceEEEEeecccccccccccccccccccccccccccccccccccccccc-
Confidence 34455555555666555 44444333 244699999999999998888776653 25789999998754 222222
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCc--CCCCCCCCCEEEEec-----CCCChhHHHHhhhh
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLS--SGESAISARVLINYE-----LPTKKETYIRRMTT 171 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~--rGlDi~~v~~VI~yd-----~P~~~~~y~~R~GR 171 (187)
.+ ..+++|+|...+...- ..+++..+++||- | ...+....+..+.+
T Consensus 93 ---~~-----------------------~~~ilv~T~~~l~~~~~~~~~~~~~~~~iVi-DE~h~l~~~~~~~~~~~i~~ 145 (169)
T PF00270_consen 93 ---SN-----------------------QADILVTTPEQLLDLISNGKINISRLSLIVI-DEAHHLSDETFRAMLKSILR 145 (169)
T ss_dssp ---HT-----------------------TSSEEEEEHHHHHHHHHTTSSTGTTESEEEE-ETHHHHHHTTHHHHHHHHHH
T ss_pred ---cc-----------------------cccccccCcchhhccccccccccccceeecc-CcccccccccHHHHHHHHHH
Confidence 32 2889999975321111 2346666776653 4 12244445555544
Q ss_pred c
Q 029806 172 C 172 (187)
Q Consensus 172 ~ 172 (187)
.
T Consensus 146 ~ 146 (169)
T PF00270_consen 146 R 146 (169)
T ss_dssp H
T ss_pred H
Confidence 4
No 249
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=64.17 E-value=30 Score=32.09 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcC--CCCCCcEEEEeCChhhHHHHHHHHHc---cCCceEEEEeccCCHHHHHHHHH
Q 029806 37 ETLVELLHLVVAG--RRPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 37 ~~L~~ll~~~~~~--~~~~~k~IVF~~~~~~~~~l~~~L~~---~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
.+.+.+|..+.+. ..+..++||.|+|+.-+-.++....+ .-.|.+...-|+++.+.+...|+
T Consensus 234 AF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR 300 (691)
T KOG0338|consen 234 AFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR 300 (691)
T ss_pred hhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh
Confidence 4455566554541 22458999999999876666554443 33488999999999988776654
No 250
>PRK14873 primosome assembly protein PriA; Provisional
Probab=63.96 E-value=27 Score=33.08 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=29.4
Q ss_pred eeEEEEecCCCCcCcCCCCCCCCCEEEEec------CCC------ChhHHHHhhhhccCC--CCeEE
Q 029806 128 SHMIVVTDACLPLLSSGESAISARVLINYE------LPT------KKETYIRRMTTCLAA--GTSFS 180 (187)
Q Consensus 128 ~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd------~P~------~~~~y~~R~GR~~r~--~g~~i 180 (187)
.+|||.|..+.+.++ +++.+|+..| .|. ...-+.|-+||+||. +|.++
T Consensus 472 ~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~ 533 (665)
T PRK14873 472 PALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVV 533 (665)
T ss_pred CCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEE
Confidence 999999983222255 3677776555 232 244556778888665 35544
No 251
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=63.01 E-value=31 Score=24.23 Aligned_cols=36 Identities=3% Similarity=0.075 Sum_probs=27.3
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
...+++++|++-.++...+..|...|+-.+.. -|++
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~-~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAEN-AGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEe-cCCH
Confidence 34678899999888888899999998533444 4764
No 252
>PRK05320 rhodanese superfamily protein; Provisional
Probab=62.87 E-value=12 Score=31.09 Aligned_cols=39 Identities=8% Similarity=0.173 Sum_probs=33.3
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCH
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 90 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~ 90 (187)
..+++++||.+-.+++..+.+|.+.|+-++..|.|++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 467899999999999999999999995358889999843
No 253
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=60.71 E-value=90 Score=25.36 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCCCcEEEEeCCh-----------hhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 029806 51 RPGLPMIVCCSSR-----------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 119 (187)
Q Consensus 51 ~~~~k~IVF~~~~-----------~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~ 119 (187)
.+.+-+||+.|.. ..++.|.+.|+++|+ .+ .++-+++.++-.+.+++|.+..
T Consensus 6 ~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF-~V-~~~~dlt~~em~~~l~~~~~~~--------------- 68 (241)
T smart00115 6 KPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGY-EV-HVKNNLTAEEMLEELKEFAERP--------------- 68 (241)
T ss_pred CCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCC-EE-EEecCCCHHHHHHHHHHHHhcc---------------
Confidence 4567888888863 479999999999996 44 5688899999999999998741
Q ss_pred cCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecC-CCChhHHHHhh
Q 029806 120 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-PTKKETYIRRM 169 (187)
Q Consensus 120 ~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~-P~~~~~y~~R~ 169 (187)
+-...+.+++. + ++-|. .+.|+--|- +-+.++.....
T Consensus 69 ----~~~~~d~~v~~-~----~sHG~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 69 ----EHSDSDSFVCV-L----LSHGE----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred ----ccCCCCEEEEE-E----cCCCC----CCeEEEecCCEEEHHHHHHhc
Confidence 00124445544 5 67773 366766664 44555555555
No 254
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=60.57 E-value=38 Score=22.98 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=27.5
Q ss_pred CcEEEEeC------ChhhHHHHHHHHHccCCceEEEEeccCCHHHHH
Q 029806 54 LPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERT 94 (187)
Q Consensus 54 ~k~IVF~~------~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~ 94 (187)
.+++||+. ...-+..+.++|...+ +....+.=..+.+.|.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-i~y~~idv~~~~~~~~ 53 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLG-VDFGTFDILEDEEVRQ 53 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-CCeEEEEcCCCHHHHH
Confidence 79999976 4567788888998887 6666655333443333
No 255
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=59.54 E-value=17 Score=32.98 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=51.6
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
++=+|||.+-..-+..-.+.|..+. +++..|++.|+.+||.+++-...+-. +..++|-
T Consensus 61 ~gITIV~SPLiALIkDQiDHL~~LK-Vp~~SLNSKlSt~ER~ri~~DL~~ek---------------------p~~K~LY 118 (641)
T KOG0352|consen 61 GGITIVISPLIALIKDQIDHLKRLK-VPCESLNSKLSTVERSRIMGDLAKEK---------------------PTIKMLY 118 (641)
T ss_pred CCeEEEehHHHHHHHHHHHHHHhcC-CchhHhcchhhHHHHHHHHHHHHhcC---------------------CceeEEE
Confidence 3678999998888877777888877 89999999999999999999988752 3578888
Q ss_pred EecC
Q 029806 133 VTDA 136 (187)
Q Consensus 133 ~Td~ 136 (187)
.|+.
T Consensus 119 ITPE 122 (641)
T KOG0352|consen 119 ITPE 122 (641)
T ss_pred Echh
Confidence 8876
No 256
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=59.47 E-value=81 Score=29.09 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=52.1
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc-C--CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL-A--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~-~--~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
++++|+..+|+--+..-+..+.+. | .-.+..|+|..++++|...+ .+ .+
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w---~~-------------------------~k 109 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELW---AK-------------------------KK 109 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHH---hh-------------------------CC
Confidence 458999999998777777666543 2 12678999999999998554 33 67
Q ss_pred EEEEec------CCCCcCcCCCCCCCCCEEEE
Q 029806 130 MIVVTD------ACLPLLSSGESAISARVLIN 155 (187)
Q Consensus 130 iLv~Td------~~~~~~~rGlDi~~v~~VI~ 155 (187)
|.|+|+ + .+-=+|+.++.|+|-
T Consensus 110 VfvaTPQvveNDl----~~Grid~~dv~~lif 137 (542)
T COG1111 110 VFVATPQVVENDL----KAGRIDLDDVSLLIF 137 (542)
T ss_pred EEEeccHHHHhHH----hcCccChHHceEEEe
Confidence 888885 3 344489999998773
No 257
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=58.18 E-value=35 Score=31.84 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcC-----CCCCCcEEEEeCChhhHHHHHHHHHccC----CceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 35 KMETLVELLHLVVAG-----RRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~-----~~~~~k~IVF~~~~~~~~~l~~~L~~~~----~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
-+..++-++..+..- ...+.=.+|.++|+.-+..+++.+.++- +|....+-|+ +.|..--.+.|+|
T Consensus 188 TLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGG---EkkKSEKARLRKG-- 262 (708)
T KOG0348|consen 188 TLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGG---EKKKSEKARLRKG-- 262 (708)
T ss_pred cHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecc---cccccHHHHHhcC--
Confidence 466777777765541 2234668999999999888887776652 3445555554 4455555678898
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCCC---CcCcCCCCCCCCCEEE
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACL---PLLSSGESAISARVLI 154 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~---~~~~rGlDi~~v~~VI 154 (187)
++|||.|+--+ -.--..+++..+++||
T Consensus 263 ----------------------iNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 263 ----------------------INILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred ----------------------ceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 99999997400 0012235555566655
No 258
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=56.62 E-value=47 Score=30.24 Aligned_cols=75 Identities=17% Similarity=0.097 Sum_probs=46.9
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (187)
.+.++||.++++.-+..+.+.+... + +....+.|+.+..+.. .+.+.+
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~-~~~~~~~gG~~~~~q~---~~l~~~------------------------ 246 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLP-FKTALVVGGDAMPQQL---YRIQQG------------------------ 246 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHH---HHhcCC------------------------
Confidence 4568999999998887766655433 3 5677777776554432 334444
Q ss_pred eeEEEEecCCC-CcC-cCCCCCCCCCEEE
Q 029806 128 SHMIVVTDACL-PLL-SSGESAISARVLI 154 (187)
Q Consensus 128 ~~iLv~Td~~~-~~~-~rGlDi~~v~~VI 154 (187)
.+|+|+|+--+ .++ ..++++.++.+||
T Consensus 247 ~~IiV~TPgrL~~~l~~~~~~l~~v~~lV 275 (518)
T PLN00206 247 VELIVGTPGRLIDLLSKHDIELDNVSVLV 275 (518)
T ss_pred CCEEEECHHHHHHHHHcCCccchheeEEE
Confidence 78999995210 003 3356777777665
No 259
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=56.49 E-value=60 Score=30.83 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=33.3
Q ss_pred CCCcEEEEeCChhhHHHHHHHHH----ccCCceEEEEeccCCHHHHHH
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVS----NLADISFSSLHSDLAETERTL 95 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~----~~~~i~~~~lhg~~~~~eR~~ 95 (187)
.+.+++|.+.|..-+...++++. ..| +.+..+.|+++.++|..
T Consensus 143 ~G~~v~VvTptreLA~qdae~~~~l~~~lG-lsv~~i~gg~~~~~r~~ 189 (656)
T PRK12898 143 AGLPVHVITVNDYLAERDAELMRPLYEALG-LTVGCVVEDQSPDERRA 189 (656)
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHHhhcC-CEEEEEeCCCCHHHHHH
Confidence 35799999999887766666554 346 89999999998876654
No 260
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=56.13 E-value=18 Score=30.88 Aligned_cols=40 Identities=5% Similarity=0.063 Sum_probs=33.8
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCH
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 90 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~ 90 (187)
.+.++++|||.+-.+++..+.+|.+.|+-.+..|.|++..
T Consensus 169 ~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 169 LKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred CCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 3568999999998899999999999995468899999743
No 261
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=55.24 E-value=29 Score=29.53 Aligned_cols=39 Identities=8% Similarity=0.184 Sum_probs=31.2
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..++|+||++-.++..+.-.|...|+-++..+.|++.
T Consensus 267 ~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 267 SLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 456899999999888888888888888545778888863
No 262
>PF13245 AAA_19: Part of AAA domain
Probab=54.01 E-value=38 Score=22.47 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=39.0
Q ss_pred EccCcchHHHHHHHHHHHHhcC-CCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEec
Q 029806 28 AVDRLQFKMETLVELLHLVVAG-RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS 86 (187)
Q Consensus 28 ~~~~~~~Kl~~L~~ll~~~~~~-~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg 86 (187)
.-+...-|..++...+..+... ..++++++|.+.++..++.+.+.+ ..+...+..+|+
T Consensus 16 ~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl-~~~~~~~~T~h~ 74 (76)
T PF13245_consen 16 QGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL-GLGVPFAMTIHS 74 (76)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH-cCCCcchhhHHH
Confidence 4444444998888888775531 122689999999999999999998 323112544543
No 263
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=52.60 E-value=2.3e+02 Score=27.47 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC------CceEEEEeccCCHHHHHHHHHHHhccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA------DISFSSLHSDLAETERTLILEEFRHTAMKWN 108 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~------~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~ 108 (187)
-++-|..++..+.. .-++-+++|+++-+-...+.+.+...| +.+.++.-..-+ -.++++.|....
T Consensus 613 ~l~~l~~~~~nL~~--~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~---- 683 (821)
T KOG1133|consen 613 MIKDLGSSISNLSN--AVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAA---- 683 (821)
T ss_pred HHHHHHHHHHHHHh--hCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHh----
Confidence 55566666665443 233789999999999988888887654 112222221111 356677776642
Q ss_pred ccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCC--CCEEEEecCCC
Q 029806 109 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELPT 160 (187)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~--v~~VI~yd~P~ 160 (187)
..+...+|++-=-| .+++||+|.| +++||..++|-
T Consensus 684 ---------------~~g~GaiLlaVVGG--KlSEGINF~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 684 ---------------ERGRGAILLAVVGG--KLSEGINFSDDLGRAVVVVGLPY 720 (821)
T ss_pred ---------------hcCCCeEEEEEecc--ccccccccccccccEEEEeecCC
Confidence 11123455544321 2699999998 88899888875
No 264
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=52.31 E-value=23 Score=25.63 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=29.1
Q ss_pred CCCcEEEEeCChhh---------HHHHHHHHHc--cCCceEEEEeccC
Q 029806 52 PGLPMIVCCSSRDE---------LDAVCSAVSN--LADISFSSLHSDL 88 (187)
Q Consensus 52 ~~~k~IVF~~~~~~---------~~~l~~~L~~--~~~i~~~~lhg~~ 88 (187)
...++||||.+-.. +.++.++|.+ .++.++..|.||+
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~ 121 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGF 121 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchH
Confidence 46899999987765 7788888887 2335899999996
No 265
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=50.24 E-value=32 Score=28.57 Aligned_cols=51 Identities=14% Similarity=0.030 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChh-hHHHHHHHHHccCCceEEEEeccCC
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~-~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+.+.++++++- ..+..++||||.+.. .+..+...|...|+-++..+.|+++
T Consensus 73 ~~~~~~~~~~G--i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~ 124 (281)
T PRK11493 73 ETFAVAMRELG--VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLA 124 (281)
T ss_pred HHHHHHHHHcC--CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHH
Confidence 45666666632 255689999998753 3445666777778545788888863
No 266
>PRK13767 ATP-dependent helicase; Provisional
Probab=50.19 E-value=48 Score=32.45 Aligned_cols=74 Identities=9% Similarity=0.094 Sum_probs=43.8
Q ss_pred eEEEEccCcchHHHH-HHHHHHHHhcCC-----CCCCcEEEEeCChhhHHHHHHHHH---------------ccCCceEE
Q 029806 24 HFYVAVDRLQFKMET-LVELLHLVVAGR-----RPGLPMIVCCSSRDELDAVCSAVS---------------NLADISFS 82 (187)
Q Consensus 24 ~~~~~~~~~~~Kl~~-L~~ll~~~~~~~-----~~~~k~IVF~~~~~~~~~l~~~L~---------------~~~~i~~~ 82 (187)
+..+..+...-|... +.-++..+.... ....++|+.+++++-+..+...|. ..+.+.+.
T Consensus 49 nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~ 128 (876)
T PRK13767 49 NVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVA 128 (876)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEE
Confidence 344555544445543 344444432201 234579999999988776654332 11136889
Q ss_pred EEeccCCHHHHHHHH
Q 029806 83 SLHSDLAETERTLIL 97 (187)
Q Consensus 83 ~lhg~~~~~eR~~~l 97 (187)
..||+.+..+|...+
T Consensus 129 v~~Gdt~~~~r~~~l 143 (876)
T PRK13767 129 IRTGDTSSYEKQKML 143 (876)
T ss_pred EEcCCCCHHHHHHHH
Confidence 999999988876544
No 267
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=50.12 E-value=83 Score=21.73 Aligned_cols=43 Identities=9% Similarity=0.038 Sum_probs=27.6
Q ss_pred CcEEEEeC------ChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHH
Q 029806 54 LPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 54 ~k~IVF~~------~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
.+++||.. ..--+..+.++|...| +....+.=..+.+.|..+.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~-i~~~~~di~~~~~~~~~l~ 60 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACG-VPFAYVNVLEDPEIRQGIK 60 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHH
Confidence 89999963 3556778888888887 6665554333444444433
No 268
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=50.06 E-value=41 Score=28.10 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=37.9
Q ss_pred CCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCC
Q 029806 21 QPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD 78 (187)
Q Consensus 21 ~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~ 78 (187)
.+...++-.+++-.-++.+.++| .+++.+.+|+++..++++..+.|++.|+
T Consensus 163 ~vDav~LDmp~PW~~le~~~~~L-------kpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 163 DVDAVFLDLPDPWNVLEHVSDAL-------KPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred ccCEEEEcCCChHHHHHHHHHHh-------CCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 55666666665543445555544 4579999999999999999999998875
No 269
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=49.77 E-value=35 Score=29.08 Aligned_cols=51 Identities=10% Similarity=-0.037 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChh-hHHHHHHHHHccCCceEEEEeccCC
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~-~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+.|.+++.++- ..+..++||||.+-. .+..+...|...|+-++..|.|+++
T Consensus 89 ~~~~~~l~~~G--i~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~ 140 (320)
T PLN02723 89 EAFAAAVSALG--IENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLP 140 (320)
T ss_pred HHHHHHHHHcC--CCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHH
Confidence 45666666632 245679999997653 3456666788888646889999963
No 270
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=49.39 E-value=76 Score=31.30 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=34.4
Q ss_pred CCcEEEEeCChhhHHHHHHHHHc----cCCceEEEEeccCCHHHHHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~----~~~i~~~~lhg~~~~~eR~~~l 97 (187)
+..+.|.+.|..-+...++++.. .| +.+..++|+++.++|...+
T Consensus 123 G~~V~VvTpn~yLA~qd~e~m~~l~~~lG-Ltv~~i~gg~~~~~r~~~y 170 (896)
T PRK13104 123 GRGVHIVTVNDYLAKRDSQWMKPIYEFLG-LTVGVIYPDMSHKEKQEAY 170 (896)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCHHHHHHHh
Confidence 46799999999777766666654 46 7999999999999886554
No 271
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=49.20 E-value=21 Score=24.39 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=30.0
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEE-EEeccC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDL 88 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~-~lhg~~ 88 (187)
..++++|+|.+-.+....+..|...|+ ... .+.|++
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~-~~~~~l~gG~ 96 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGF-TNVYNLDGGI 96 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCC-ccccccCCcH
Confidence 468999999999999999999999984 554 677775
No 272
>PTZ00424 helicase 45; Provisional
Probab=48.56 E-value=77 Score=27.25 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=56.8
Q ss_pred EccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 28 AVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 28 ~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
..+...-|... +.-++..+.. .....++||+++++.-+..+.+.+...+ .+.+..+.|+....+ .++.++.+
T Consensus 71 ~apTGsGKT~~~~l~~l~~~~~-~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~ 146 (401)
T PTZ00424 71 QAQSGTGKTATFVIAALQLIDY-DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRD---DINKLKAG 146 (401)
T ss_pred ECCCCChHHHHHHHHHHHHhcC-CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHH---HHHHHcCC
Confidence 33434445543 3334444221 2345789999999988888777665542 246677778766443 23444443
Q ss_pred cccccccccccCCCCCcCCCCCCceeEEEEecCCCC--cCcCCCCCCCCCEEE
Q 029806 104 AMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP--LLSSGESAISARVLI 154 (187)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~--~~~rGlDi~~v~~VI 154 (187)
.+|+|+|.--+. +..+.+.+.++++||
T Consensus 147 ------------------------~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvV 175 (401)
T PTZ00424 147 ------------------------VHMVVGTPGRVYDMIDKRHLRVDDLKLFI 175 (401)
T ss_pred ------------------------CCEEEECcHHHHHHHHhCCcccccccEEE
Confidence 679999974100 012345567777766
No 273
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=48.39 E-value=2e+02 Score=29.86 Aligned_cols=101 Identities=13% Similarity=0.190 Sum_probs=62.4
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHcc--C-------------------CceEEEEeccCCHHHHHHHHHHHhcccccccc
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNL--A-------------------DISFSSLHSDLAETERTLILEEFRHTAMKWNQ 109 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~--~-------------------~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~ 109 (187)
...++.|||+++++.+..++..|-.. + .++...=|-+++.....-+-+-|..|
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g------ 1430 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAG------ 1430 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcC------
Confidence 45689999999999998776544221 0 02222226666666655555667666
Q ss_pred cccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEE-----Eec------CCCChhHHHHhhhhccCCCCe
Q 029806 110 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI-----NYE------LPTKKETYIRRMTTCLAAGTS 178 (187)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI-----~yd------~P~~~~~y~~R~GR~~r~~g~ 178 (187)
.+.++|...-|+... .. .+.|| -|| .+-+....+|+.|++.| .|.
T Consensus 1431 -----------------~i~v~v~s~~~~~~~-----~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~-~~k 1486 (1674)
T KOG0951|consen 1431 -----------------AIQVCVMSRDCYGTK-----LK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG-AGK 1486 (1674)
T ss_pred -----------------cEEEEEEEccccccc-----cc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC-Ccc
Confidence 488888776664332 11 34454 344 35568899999999866 344
Q ss_pred EEE
Q 029806 179 FSD 181 (187)
Q Consensus 179 ~i~ 181 (187)
++.
T Consensus 1487 ~vi 1489 (1674)
T KOG0951|consen 1487 CVI 1489 (1674)
T ss_pred EEE
Confidence 443
No 274
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=47.08 E-value=49 Score=28.77 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=30.5
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..+++++|++-..+...+..|...|+-++..+.|++
T Consensus 55 ~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 92 (376)
T PRK08762 55 DRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGF 92 (376)
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcH
Confidence 34678999999977788888899888864678888775
No 275
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=46.38 E-value=90 Score=31.04 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=32.8
Q ss_pred CcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHH
Q 029806 54 LPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~ 96 (187)
.+++|.+.|+.-+...++++... | +.+..+.|+++.+++...
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lG-LsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLG-LTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHH
Confidence 45788899998887777777543 5 789999999998887644
No 276
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=46.05 E-value=56 Score=27.92 Aligned_cols=36 Identities=6% Similarity=0.062 Sum_probs=29.0
Q ss_pred CCcEEEEeC-ChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 53 GLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 53 ~~k~IVF~~-~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
..+++|||. +-......+.+|...|+ .+..|.|++.
T Consensus 74 ~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~ 110 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYK 110 (311)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHH
Confidence 345999995 56678888999999995 8899999863
No 277
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=46.05 E-value=1.4e+02 Score=23.22 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
+++.++++... ..+.++.++-.+...++.+++.|++. +.+.+...||-.++++...++++.+..
T Consensus 35 dl~~~l~~~~~---~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s 99 (177)
T TIGR00696 35 DLMEELCQRAG---KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS 99 (177)
T ss_pred HHHHHHHHHHH---HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc
Confidence 44555555421 22367888888888889999999765 346766679999888888888888775
No 278
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=45.93 E-value=1.3e+02 Score=24.99 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=54.5
Q ss_pred EEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccc
Q 029806 27 VAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMK 106 (187)
Q Consensus 27 ~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~ 106 (187)
+.++..+ |.+...++++.+....-+...++|=-.+..+++++-. .-.++-...--|.|+..+--++++++..
T Consensus 132 VHTPr~n-K~e~t~~ildi~~~~~l~~~lvvIDH~N~etv~~vld---~e~~vGlTvqPgKlt~~eAveIV~ey~~---- 203 (254)
T COG1099 132 VHTPRRN-KKEATSKILDILIESGLKPSLVVIDHVNEETVDEVLD---EEFYVGLTVQPGKLTVEEAVEIVREYGA---- 203 (254)
T ss_pred EeCCCCc-chhHHHHHHHHHHHcCCChhheehhcccHHHHHHHHh---ccceEEEEecCCcCCHHHHHHHHHHhCc----
Confidence 4556666 7777777776644333445666665555555554432 2111112223388999999999999974
Q ss_pred ccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCC
Q 029806 107 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESA 147 (187)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi 147 (187)
-++++.+|+ .+.--|+
T Consensus 204 ---------------------~r~ilnSD~----~s~~sd~ 219 (254)
T COG1099 204 ---------------------ERIILNSDA----GSAASDP 219 (254)
T ss_pred ---------------------ceEEEeccc----ccccccc
Confidence 678999998 5554443
No 279
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=45.83 E-value=83 Score=26.58 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=40.0
Q ss_pred EEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEec
Q 029806 56 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTD 135 (187)
Q Consensus 56 ~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td 135 (187)
-+|+|...+....|-+.+.-.. +...+| +.+++++...+..+..+. ..+-+.+|
T Consensus 32 D~iaaEDTR~t~~LL~~~~I~~--~~is~h-~hne~~~~~~li~~l~~g-----------------------~~valVSD 85 (275)
T COG0313 32 DVIAAEDTRVTRKLLSHLGIKT--PLISYH-EHNEKEKLPKLIPLLKKG-----------------------KSVALVSD 85 (275)
T ss_pred CEEEEeccHHHHHHHHHhCCCC--ceeccc-CCcHHHHHHHHHHHHhcC-----------------------CeEEEEec
Confidence 3678888878877777764322 345555 456666666666655542 67888999
Q ss_pred CCCCcCc
Q 029806 136 ACLPLLS 142 (187)
Q Consensus 136 ~~~~~~~ 142 (187)
+|+|..+
T Consensus 86 AG~P~IS 92 (275)
T COG0313 86 AGTPLIS 92 (275)
T ss_pred CCCCccc
Confidence 9777654
No 280
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=45.44 E-value=79 Score=20.13 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=27.7
Q ss_pred EEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhc
Q 029806 56 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (187)
Q Consensus 56 ~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~ 102 (187)
.++.|.....+..+.+.... + ..+..+.|.....+....++++..
T Consensus 2 ~l~ivEg~~da~~~~~~~~~-~-~~~~~~~G~~~~~~~~~~l~~~~~ 46 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGF-G-GNVVALGGHLLKKEIIKLLKRLAK 46 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCC-C-EEEEEEeeeecHHHHHHHHHHHhc
Confidence 46778888888877776643 2 256666666544555555555543
No 281
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=44.63 E-value=62 Score=25.83 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=56.8
Q ss_pred HHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCC
Q 029806 66 LDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGE 145 (187)
Q Consensus 66 ~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGl 145 (187)
-++..+.+....++.-..+||..=-.-+..+.+....| .++++-.|.- .++-+
T Consensus 56 ~~EF~~~i~~~~fLE~a~~~gnyYGT~~~~ve~~~~~G------------------------~~vildId~q---Ga~qv 108 (191)
T COG0194 56 EEEFEELIERDEFLEWAEYHGNYYGTSREPVEQALAEG------------------------KDVILDIDVQ---GALQV 108 (191)
T ss_pred HHHHHHHHhcCCcEEEEEEcCCcccCcHHHHHHHHhcC------------------------CeEEEEEehH---HHHHH
Confidence 35566666665667888899887777788888888887 7778877762 22222
Q ss_pred CCCCCCEEEEecCCCChhHHHHhh-hh
Q 029806 146 SAISARVLINYELPTKKETYIRRM-TT 171 (187)
Q Consensus 146 Di~~v~~VI~yd~P~~~~~y~~R~-GR 171 (187)
--.--+.|..|-.|++.+.+..|. ||
T Consensus 109 k~~~p~~v~IFi~pPs~eeL~~RL~~R 135 (191)
T COG0194 109 KKKMPNAVSIFILPPSLEELERRLKGR 135 (191)
T ss_pred HHhCCCeEEEEEcCCCHHHHHHHHHcc
Confidence 211227899999999999999998 44
No 282
>PRK02362 ski2-like helicase; Provisional
Probab=44.16 E-value=61 Score=30.89 Aligned_cols=61 Identities=10% Similarity=0.073 Sum_probs=41.3
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc---CCceEEEEeccCCH
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAE 90 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~---~~i~~~~lhg~~~~ 90 (187)
..+..+...-|.-. +.-+++.+. +++++++.+++++-+.+....+... | +++..++|+.+.
T Consensus 42 vlv~APTGSGKTlia~lail~~l~----~~~kal~i~P~raLa~q~~~~~~~~~~~g-~~v~~~tGd~~~ 106 (737)
T PRK02362 42 LLAAIPTASGKTLIAELAMLKAIA----RGGKALYIVPLRALASEKFEEFERFEELG-VRVGISTGDYDS 106 (737)
T ss_pred EEEECCCcchHHHHHHHHHHHHHh----cCCcEEEEeChHHHHHHHHHHHHHhhcCC-CEEEEEeCCcCc
Confidence 34444444445443 234455532 3579999999999999888887755 5 789999998754
No 283
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=43.79 E-value=38 Score=29.38 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+..+++++|++-.+....+..|...|+-++..+.|++.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 45789999999888999999999988535778999873
No 284
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=42.72 E-value=67 Score=31.85 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=47.6
Q ss_pred CcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEE
Q 029806 54 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV 133 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~ 133 (187)
+=+||..+=.+-++.-...|...+ |.+..|++++...+|..+++.+..+. +.+++|-.
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~-I~a~~L~s~q~~~~~~~i~q~l~~~~---------------------~~ikilYv 362 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKG-IPACFLSSIQTAAERLAILQKLANGN---------------------PIIKILYV 362 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcC-cceeeccccccHHHHHHHHHHHhCCC---------------------CeEEEEEe
Confidence 345565666666666667776667 89999999999999999999999983 34888877
Q ss_pred ecC
Q 029806 134 TDA 136 (187)
Q Consensus 134 Td~ 136 (187)
|+-
T Consensus 363 tPE 365 (941)
T KOG0351|consen 363 TPE 365 (941)
T ss_pred CHH
Confidence 765
No 285
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=42.32 E-value=1.4e+02 Score=24.35 Aligned_cols=62 Identities=11% Similarity=0.223 Sum_probs=42.3
Q ss_pred EEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+..+++.+.-.+.+.+-++.+.....+...+-|.|.+...+..+.+.|.+.| |++ .+.+..+
T Consensus 50 ~~~~~~~~~e~~~i~~~I~~l~~~~~~~~diAVL~R~~~~~~~i~~~L~~~g-Ip~-~~~~~~~ 111 (351)
T PF13361_consen 50 IIEFDNEEEEAEYIAEEIKELIRNGIPPSDIAVLVRTNSQIKEIEDALKEAG-IPY-RISGSKS 111 (351)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTS-GGGEEEEESSGGHHHHHHHHHHHTT-S-E-EESSSSB
T ss_pred eeccCCHHHHHHHHHHHHHHHhhcCCCcccEEEEEECchhHHHHHHHHhhhc-cee-Eeccccc
Confidence 4455555445566666666644324456889999999999999999999998 775 5555543
No 286
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=42.24 E-value=1.1e+02 Score=27.16 Aligned_cols=59 Identities=7% Similarity=0.044 Sum_probs=43.5
Q ss_pred CcEEEE---eCChhhHHHHHHHHHccCC--ceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 029806 54 LPMIVC---CSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (187)
Q Consensus 54 ~k~IVF---~~~~~~~~~l~~~L~~~~~--i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (187)
+.+||+ +.|-.++...++.|++.|. +.+...||-++ .-...+.+.|.++. +
T Consensus 265 r~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~-----------------------i 320 (382)
T PRK06827 265 KDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGY-----------------------F 320 (382)
T ss_pred CEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCC-----------------------C
Confidence 456665 5677788888889888763 67788899888 66666667777763 7
Q ss_pred eEEEEecC
Q 029806 129 HMIVVTDA 136 (187)
Q Consensus 129 ~iLv~Td~ 136 (187)
+-+++||.
T Consensus 321 ~~iv~TdT 328 (382)
T PRK06827 321 DRIIGTNL 328 (382)
T ss_pred CEEEEeCC
Confidence 77888887
No 287
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=41.92 E-value=50 Score=27.33 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=42.6
Q ss_pred CCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCC
Q 029806 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD 78 (187)
Q Consensus 20 ~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~ 78 (187)
..+...++-+++.-.-+..+.+.|+ .+++.+.+|+++..+++++++.|++.|+
T Consensus 112 ~~~DavfLDlp~Pw~~i~~~~~~L~------~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWEAIPHAKRALK------KPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp TSEEEEEEESSSGGGGHHHHHHHE-------EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred CcccEEEEeCCCHHHHHHHHHHHHh------cCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 4567778888877656777777762 3468999999999999999999999875
No 288
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=41.84 E-value=1e+02 Score=28.39 Aligned_cols=60 Identities=10% Similarity=0.225 Sum_probs=38.1
Q ss_pred CCCCCcEEEEeCChhhHHHHHHHH----HccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCC
Q 029806 50 RRPGLPMIVCCSSRDELDAVCSAV----SNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 125 (187)
Q Consensus 50 ~~~~~k~IVF~~~~~~~~~l~~~L----~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~ 125 (187)
.+++-.+||.|+|+.-+-..+..+ .....+.+..+-|+.+ |..-.++..++
T Consensus 151 ~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~---~~~e~~kl~k~---------------------- 205 (543)
T KOG0342|consen 151 PRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNN---FSVEADKLVKG---------------------- 205 (543)
T ss_pred CCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCcc---chHHHHHhhcc----------------------
Confidence 446678999999998765544433 3331267777777743 33333444455
Q ss_pred CceeEEEEecC
Q 029806 126 HKSHMIVVTDA 136 (187)
Q Consensus 126 ~~~~iLv~Td~ 136 (187)
.++||+|+-
T Consensus 206 --~niliATPG 214 (543)
T KOG0342|consen 206 --CNILIATPG 214 (543)
T ss_pred --ccEEEeCCc
Confidence 888999874
No 289
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=41.37 E-value=24 Score=34.46 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=40.1
Q ss_pred ceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhcc
Q 029806 127 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 173 (187)
Q Consensus 127 ~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~ 173 (187)
..+.+.+--+ +.+|-|-|+|=.+.=.....|..+-+|.+||..
T Consensus 483 plRFIFS~wa----LrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGL 525 (985)
T COG3587 483 PLRFIFSKWA----LREGWDNPNVFTICKLRSSGSEISKLQEVGRGL 525 (985)
T ss_pred cceeeeehhH----HhhcCCCCCeeEEEEecCCCcchHHHHHhccce
Confidence 4899999999 999999999999999999999999999999983
No 290
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=41.31 E-value=1.2e+02 Score=29.35 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=33.9
Q ss_pred CCcEEEEeCChhhHHHHHHHHHc----cCCceEEEEeccCCHHHHHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~----~~~i~~~~lhg~~~~~eR~~~l 97 (187)
+.++.|.++|..-+...++++.. .| +.+..+.|+++.++|...+
T Consensus 97 G~~V~VvTpt~~LA~qdae~~~~l~~~LG-Lsv~~i~g~~~~~~r~~~y 144 (745)
T TIGR00963 97 GKGVHVVTVNDYLAQRDAEWMGQVYRFLG-LSVGLILSGMSPEERREAY 144 (745)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCC-CeEEEEeCCCCHHHHHHhc
Confidence 46899999998777766665543 46 8999999999988776444
No 291
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=40.50 E-value=1.7e+02 Score=22.44 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEE-EeccCCHHHHHHHHHHHhcc
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSS-LHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~-lhg~~~~~eR~~~l~~Fr~~ 103 (187)
+++.++++... ..+.++.++-.+...++.+.+.|++. +++.+.. .||-+...+...+++..+..
T Consensus 33 dl~~~ll~~~~---~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~ 98 (171)
T cd06533 33 DLMPALLELAA---QKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS 98 (171)
T ss_pred HHHHHHHHHHH---HcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc
Confidence 34455555422 23578888899999999999888765 3467666 67888877777778887775
No 292
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=40.37 E-value=52 Score=30.87 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCC---CCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCC
Q 029806 36 METLVELLHLVVAGRR---PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLA 89 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~---~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~ 89 (187)
+.+|..+|+.++...+ .+--+||..+|+.-+-.....|.+-| .+.+..+-|+.+
T Consensus 121 LAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~ 180 (758)
T KOG0343|consen 121 LAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKD 180 (758)
T ss_pred eeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCch
Confidence 4455555555444232 45789999999999999999887764 146777778765
No 293
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=39.99 E-value=1.9e+02 Score=23.65 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=34.2
Q ss_pred CceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhh----HHHHHHHHHccC
Q 029806 22 PRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDE----LDAVCSAVSNLA 77 (187)
Q Consensus 22 i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~----~~~l~~~L~~~~ 77 (187)
-..++..++....-...+.++++. ..+.++.|+.+.... ++.+.+.+.+.+
T Consensus 95 ~~~~~r~~p~~~~~~~a~~~~l~~-----~~w~~v~vv~~~~~~~~~~~~~~~~~~~~~~ 149 (348)
T PF01094_consen 95 YPTFFRTVPSDSSQARALVDLLKH-----FGWTRVSVVYSDDDYGNSLADSFQDLLRERG 149 (348)
T ss_dssp TTTEEESSB-HHHHHHHHHHHHHH-----TTSSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccHHHHHHHHHHhhhc-----CCCceeeeeccccccccccchhhhhhhcccc
Confidence 344555555555457778888888 446777777777766 777888887755
No 294
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=38.85 E-value=1.4e+02 Score=21.38 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=25.2
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSA 72 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~ 72 (187)
..++.-.++-+.......+.+..+.+.+.. . .+++++||.|-.++-.|...
T Consensus 55 ~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~--~-~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 55 ALGLQYVHIPVDGGAITEEDVEAFADALES--L-PKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HCT-EEEE----TTT--HHHHHHHHHHHHT--T-TTSEEEE-SCSHHHHHHHHH
T ss_pred HcCCeEEEeecCCCCCCHHHHHHHHHHHHh--C-CCCEEEECCCChhHHHHHHH
Confidence 356666666665544333334433333221 2 47999999999888766543
No 295
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=38.71 E-value=45 Score=29.33 Aligned_cols=38 Identities=8% Similarity=0.119 Sum_probs=32.0
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..+++++|.+-.++...+..|...|+-++..|.|++
T Consensus 341 ~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~ 378 (392)
T PRK07878 341 PQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGV 378 (392)
T ss_pred CCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcH
Confidence 45679999999988889999999999854588899986
No 296
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=38.48 E-value=77 Score=31.47 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=43.9
Q ss_pred CCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc-----c-CCCCeEEEEEE
Q 029806 125 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC-----L-AAGTSFSDIIL 184 (187)
Q Consensus 125 ~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~-----~-r~~g~~i~~v~ 184 (187)
....++||.+|. +-.|.|.|-.+ .+..|=|-.--..+|-+.|+ + ...|..++|+.
T Consensus 591 ~d~~kilIV~dm----lLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 591 DDPLDLLIVVDM----LLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred CCCCCEEEEEcc----ccccCCccccc-eEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 446999999999 99999999765 56678888888899988888 3 24578887765
No 297
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=38.45 E-value=1.6e+02 Score=22.44 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=44.8
Q ss_pred eEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecC-
Q 029806 80 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL- 158 (187)
Q Consensus 80 ~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~- 158 (187)
.+..+....++.+=...++.|+... .+|.=++...++||.-..
T Consensus 79 ~~~lift~~dp~~v~k~l~~~~~~~------------------------------------~ar~G~iA~~dvvi~~G~~ 122 (163)
T cd05796 79 QVGLLFTNEPPEEVIEYFDSYSEPD------------------------------------FARAGSIATETVTLPEGPL 122 (163)
T ss_pred CEEEEEECCCHHHHHHHHHHcCCcc------------------------------------cccCCCCCCceEEEeCCCC
Confidence 5666666667788888888888764 778888888999997663
Q ss_pred ---CCChhHHHHhhhhc
Q 029806 159 ---PTKKETYIRRMTTC 172 (187)
Q Consensus 159 ---P~~~~~y~~R~GR~ 172 (187)
|.+.+.+.|..|-.
T Consensus 123 ~~~p~~~~~~~~~lgip 139 (163)
T cd05796 123 EQFPHSMEPQLRKLGLP 139 (163)
T ss_pred CCCCCCcchHHHHcCCC
Confidence 67889999999875
No 298
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=38.24 E-value=92 Score=26.32 Aligned_cols=84 Identities=17% Similarity=0.279 Sum_probs=42.8
Q ss_pred eEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHH-HHHHHhc
Q 029806 24 HFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTL-ILEEFRH 102 (187)
Q Consensus 24 ~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~-~l~~Fr~ 102 (187)
-+.+-++..+.. .+-.+.++.+.. ..+|++-+++.+ ..+.+.+.. + -+...+|. .+.+++.. +++..+.
T Consensus 14 Ly~VgtgiGn~e-dITlRAl~~L~~-----aDvI~~edtr~t-~~ll~~~~i-~-~~~~~~~~-~~~~~~~~~i~~~l~~ 83 (287)
T PRK14994 14 LYIVPTPIGNLA-DITQRALEVLQA-----VDLIAAEDTRHT-GLLLQHFAI-N-ARLFALHD-HNEQQKAETLLAKLQE 83 (287)
T ss_pred EEEEeCCCCChH-HhhHHHHHHHHh-----CCEEEEeCCcch-HHHHhhcCC-C-CEEEEccC-CCHHHHHHHHHHHHHC
Confidence 355566665523 333334444222 455554444433 445555532 2 25566664 35545544 5566677
Q ss_pred ccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcC
Q 029806 103 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLL 141 (187)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~ 141 (187)
| .+|.+.||+|.|..
T Consensus 84 G------------------------~~ValvSdaGdP~I 98 (287)
T PRK14994 84 G------------------------QNIALVSDAGTPLI 98 (287)
T ss_pred C------------------------CeEEEEccCCCCce
Confidence 6 56777778765543
No 299
>PRK00254 ski2-like helicase; Provisional
Probab=38.24 E-value=1.1e+02 Score=29.14 Aligned_cols=64 Identities=9% Similarity=0.116 Sum_probs=42.7
Q ss_pred eEEEEccCcchHHHHH-HHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHc---cCCceEEEEeccCCHH
Q 029806 24 HFYVAVDRLQFKMETL-VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAET 91 (187)
Q Consensus 24 ~~~~~~~~~~~Kl~~L-~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~---~~~i~~~~lhg~~~~~ 91 (187)
...+..+...-|.... .-+++.+.. .+.++|+.+++++-+.+..+.+.. .| +++..++|+.+..
T Consensus 41 nvlv~apTGsGKT~~~~l~il~~l~~---~~~~~l~l~P~~aLa~q~~~~~~~~~~~g-~~v~~~~Gd~~~~ 108 (720)
T PRK00254 41 NLVLAIPTASGKTLVAEIVMVNKLLR---EGGKAVYLVPLKALAEEKYREFKDWEKLG-LRVAMTTGDYDST 108 (720)
T ss_pred cEEEECCCCcHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHHHHHHHHHhhcC-CEEEEEeCCCCCc
Confidence 3444455544465543 445555332 357899999999999888876653 35 7899999998754
No 300
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=37.61 E-value=3e+02 Score=24.54 Aligned_cols=71 Identities=8% Similarity=-0.074 Sum_probs=46.1
Q ss_pred cCcchHHHHHHHHHHHHhc----CCCCCCcEEEEeCChhhHHHHHHHHHccCCc-eEEEEeccCCHHHHHHHHHHHhcc
Q 029806 30 DRLQFKMETLVELLHLVVA----GRRPGLPMIVCCSSRDELDAVCSAVSNLADI-SFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 30 ~~~~~Kl~~L~~ll~~~~~----~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i-~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
.+.+.|...|-.+|..-.. -....+++.|.+++.+.++|..+.|.+..+- ++..+. ..+++.++-+....+
T Consensus 166 ns~~~~v~tL~~~L~g~~~p~~Il~grD~~iyVLa~~qrd~~W~~Q~L~k~~~~~~v~v~~---~~~~~~~ie~~L~~~ 241 (393)
T PRK15327 166 NSPQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQSLARGDYDKNARVIN---ENEENKRVSTWLDTY 241 (393)
T ss_pred CchHHHHHHHHHHhcCCCCceEEEeCCCCcEEEEEccccHhHHHHHHHhhCCCcCceEEec---hHHHHHHHHHHHHhc
Confidence 3444489999999864111 0123478999999999999999999875421 333332 456666666655554
No 301
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=37.22 E-value=2e+02 Score=26.49 Aligned_cols=94 Identities=16% Similarity=0.259 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcC--CCCCC--cEEEEeCChhhHHHHHHHH----HccCCceEEEEeccCCHHHHHHHHHHHhccccc
Q 029806 35 KMETLVELLHLVVAG--RRPGL--PMIVCCSSRDELDAVCSAV----SNLADISFSSLHSDLAETERTLILEEFRHTAMK 106 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~--~~~~~--k~IVF~~~~~~~~~l~~~L----~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~ 106 (187)
-+..|..+++.+..+ ..+++ -.+|..+|+.-+..+.+.+ .....+++..+-|+++.++ -++.|+..
T Consensus 57 TlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee--- 130 (567)
T KOG0345|consen 57 TLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEE--- 130 (567)
T ss_pred hhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHh---
Confidence 466777777665332 22333 5788899997776554433 3323478999999976544 56778876
Q ss_pred ccccccccCCCCCcCCCCCCceeEEEEecCCC-CcCcC---CCCCCCCCEEE
Q 029806 107 WNQKVTEQSGDESETGKDEHKSHMIVVTDACL-PLLSS---GESAISARVLI 154 (187)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~~~~r---GlDi~~v~~VI 154 (187)
...|||+|+-=+ .++.| ++|+...+++|
T Consensus 131 --------------------~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 131 --------------------GPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred --------------------CCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 388999996300 00333 46655666655
No 302
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=36.74 E-value=99 Score=26.85 Aligned_cols=49 Identities=8% Similarity=0.121 Sum_probs=36.5
Q ss_pred CCCcEEEEeC-ChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhc
Q 029806 52 PGLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (187)
Q Consensus 52 ~~~k~IVF~~-~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~ 102 (187)
+..+++|||. .-.....++.+|...|+ .+..|.|++.. -|...++.+..
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~a-wr~~~~~~~~~ 136 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKA-YRRFVIDTLEE 136 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHH-HHHhhHHHHhh
Confidence 5678999995 55677888889988884 88999999854 35555555543
No 303
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.69 E-value=84 Score=29.11 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHHHhcccccccccc
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~ 111 (187)
+....-+++.+....-+.-+++|.++++.-+-.+++.|... | +.+..+.|.-+.+.-...| .+.
T Consensus 198 LaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tg-L~V~~~sgq~sl~~E~~qL---~~~-------- 265 (620)
T KOG0350|consen 198 LAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTG-LAVCSLSGQNSLEDEARQL---ASD-------- 265 (620)
T ss_pred eeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCc-eEEEecccccchHHHHHHH---hcC--------
Confidence 34455556554443345589999999999998888888664 4 5677777764433322212 111
Q ss_pred cccCCCCCcCCCCCCceeEEEEecCCCC--c-CcCCCCCCCCCEEE
Q 029806 112 TEQSGDESETGKDEHKSHMIVVTDACLP--L-LSSGESAISARVLI 154 (187)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLv~Td~~~~--~-~~rGlDi~~v~~VI 154 (187)
+.+.+++|||+|+.-|- + .-.|+|+....+.|
T Consensus 266 -----------~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLV 300 (620)
T KOG0350|consen 266 -----------PPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLV 300 (620)
T ss_pred -----------CCccccceEEcCchHHHHhccCCCCcchhhceEEE
Confidence 12237899999985000 0 13456666655544
No 304
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=35.53 E-value=79 Score=31.45 Aligned_cols=65 Identities=9% Similarity=0.186 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcC----CCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 35 KMETLVELLHLVVAG----RRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~----~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
++.+++-.++.+.-. ...+.-+||.|+|+..+..+..++++. + +.+...+|+....+ .+.+.++|
T Consensus 416 T~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~-ir~v~vygg~~~~~---qiaelkRg 488 (997)
T KOG0334|consen 416 TLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG-IRVVCVYGGSGISQ---QIAELKRG 488 (997)
T ss_pred chhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC-ceEEEecCCccHHH---HHHHHhcC
Confidence 455545555432221 123456788899999888777766543 5 89999999876554 45666776
No 305
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=34.76 E-value=61 Score=22.30 Aligned_cols=31 Identities=10% Similarity=0.166 Sum_probs=23.2
Q ss_pred EEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 57 IVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 57 IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
||.+.....+..+++.|.... ..+....|-+
T Consensus 2 liIvE~ps~a~~i~~~l~~~~-~~v~~~~Ghl 32 (100)
T PF01751_consen 2 LIIVEKPSDAKAIAKALGGEE-YIVIATSGHL 32 (100)
T ss_dssp EEEESSHHHHHHHHHHSSTTT-EEEEEESSSS
T ss_pred EEEEeCHHHHHHHHHHcCCCC-EEEEEeCCcc
Confidence 677899999999999997443 4666666654
No 306
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=34.52 E-value=68 Score=22.34 Aligned_cols=38 Identities=8% Similarity=0.122 Sum_probs=22.9
Q ss_pred CCCcEEEEeCCh-h----hHHHHHHHHHc----cCCceEEEEeccCC
Q 029806 52 PGLPMIVCCSSR-D----ELDAVCSAVSN----LADISFSSLHSDLA 89 (187)
Q Consensus 52 ~~~k~IVF~~~~-~----~~~~l~~~L~~----~~~i~~~~lhg~~~ 89 (187)
...+++++|++. . .+..+.+.+.. .|+.++..|.|++.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 346889999732 2 23344443432 26567999999864
No 307
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=34.32 E-value=42 Score=33.32 Aligned_cols=44 Identities=7% Similarity=0.056 Sum_probs=40.1
Q ss_pred ceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccC
Q 029806 127 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 174 (187)
Q Consensus 127 ~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r 174 (187)
+.+.+++-.+ +.+|-|-|+|=.+.-+.-..+...-.|.+||..|
T Consensus 501 ~~~fifs~~a----l~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr 544 (986)
T PRK15483 501 TRRFLFSKWT----LREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLR 544 (986)
T ss_pred CeEEEEEhHH----hhhcCCCCCeEEEEEeccCCchHHHHHHhcccee
Confidence 5899999999 9999999999999999988888999999999833
No 308
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=33.92 E-value=61 Score=31.59 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=61.0
Q ss_pred EEEEccCcchHH-HHHHHHHHHHhcCC-C---CCCcEEEEeC----ChhhHHHHHHHHHccCCceEEEEeccCCHHHHHH
Q 029806 25 FYVAVDRLQFKM-ETLVELLHLVVAGR-R---PGLPMIVCCS----SRDELDAVCSAVSNLADISFSSLHSDLAETERTL 95 (187)
Q Consensus 25 ~~~~~~~~~~Kl-~~L~~ll~~~~~~~-~---~~~k~IVF~~----~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~ 95 (187)
..+..+...-|. ..++.++..+.... . .+-.+|-.++ .++.-..|..++...| +++..-||++++.+|..
T Consensus 40 vLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G-~~v~vRhGDT~~~er~r 118 (814)
T COG1201 40 VLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELG-IEVAVRHGDTPQSEKQK 118 (814)
T ss_pred eEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcC-CccceecCCCChHHhhh
Confidence 344444333343 34556665555421 1 1233444343 2334445566667778 79999999999999873
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCC----CCCCCCCEEEE
Q 029806 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSG----ESAISARVLIN 155 (187)
Q Consensus 96 ~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rG----lDi~~v~~VI~ 155 (187)
. .+. ..+||++|+-.++++--+ --+.+|.+||-
T Consensus 119 ~----~~~-----------------------PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIV 155 (814)
T COG1201 119 M----LKN-----------------------PPHILITTPESLAILLNSPKFRELLRDVRYVIV 155 (814)
T ss_pred c----cCC-----------------------CCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEe
Confidence 2 232 489999999866655444 23567888773
No 309
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=33.84 E-value=88 Score=21.80 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=24.4
Q ss_pred CCcEEEEeCCh-----hhHHHHHHHHHccCC--ceEEEEeccCC
Q 029806 53 GLPMIVCCSSR-----DELDAVCSAVSNLAD--ISFSSLHSDLA 89 (187)
Q Consensus 53 ~~k~IVF~~~~-----~~~~~l~~~L~~~~~--i~~~~lhg~~~ 89 (187)
..++|++|.+. ..+.++.+.+.+.|+ ..+..|.|++.
T Consensus 66 ~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 36788889752 235566666766662 36777888863
No 310
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=33.84 E-value=2.7e+02 Score=22.90 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=44.1
Q ss_pred CceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEecc
Q 029806 22 PRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD 87 (187)
Q Consensus 22 i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~ 87 (187)
...-.+.+.+.+ |=..|..++..+.. ..+++|..-++.+.+..+.+++...+ |....+|..
T Consensus 151 ~~~GIlft~~~~-KG~~L~~fL~~~~~---~pk~IIfIDD~~~nl~sv~~a~k~~~-I~f~G~~Yt 211 (252)
T PF11019_consen 151 FYDGILFTGGQD-KGEVLKYFLDKINQ---SPKKIIFIDDNKENLKSVEKACKKSG-IDFIGFHYT 211 (252)
T ss_pred eecCeEEeCCCc-cHHHHHHHHHHcCC---CCCeEEEEeCCHHHHHHHHHHHhhCC-CcEEEEEEc
Confidence 333345666666 99999999988322 23455555667888999999999877 888888864
No 311
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=33.52 E-value=1.9e+02 Score=21.85 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=32.5
Q ss_pred cEEEEeCC-------hhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHH
Q 029806 55 PMIVCCSS-------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 55 k~IVF~~~-------~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
+++||+.+ -..+..+.++|...+ |....+.=+|..+.|.++.+..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~-V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFR-VKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHh
Confidence 35666665 677888888998887 7777777677777777765544
No 312
>COG1204 Superfamily II helicase [General function prediction only]
Probab=33.38 E-value=1.4e+02 Score=28.88 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=32.7
Q ss_pred CCcEEEEeCChhhHHHHHHHHH---ccCCceEEEEeccCCHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVS---NLADISFSSLHSDLAET 91 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~---~~~~i~~~~lhg~~~~~ 91 (187)
+.++|--|+.++-+++.+..++ ..| +++..++|+++..
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~~~~G-irV~~~TgD~~~~ 116 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRLEELG-IRVGISTGDYDLD 116 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhHHhcC-CEEEEecCCcccc
Confidence 5799999999999999999888 557 8999999998643
No 313
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=33.37 E-value=1.9e+02 Score=21.02 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=43.6
Q ss_pred ceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC----CceEEEEeccCCHHHHHHHHH
Q 029806 23 RHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 23 ~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~----~i~~~~lhg~~~~~eR~~~l~ 98 (187)
....+.-+...-|...+...+..... ..+..+++|.+++...+..+.+.+.... ......+++... ...++
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 99 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK-RGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLR 99 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc-ccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHH
Confidence 34455555555588855555544232 2335789999999888887777776543 123445555432 33444
Q ss_pred HHhcc
Q 029806 99 EFRHT 103 (187)
Q Consensus 99 ~Fr~~ 103 (187)
++..+
T Consensus 100 ~~~~~ 104 (201)
T smart00487 100 KLESG 104 (201)
T ss_pred HHhcC
Confidence 55554
No 314
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=33.15 E-value=2e+02 Score=26.36 Aligned_cols=75 Identities=13% Similarity=0.214 Sum_probs=47.1
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc---CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~---~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
...++|..+|+.-++.++..-++. -.+++...+|+.+ .+.+. ++... ..+
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~--~~~q~--~~~~~-----------------------gcd 204 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTD--LGAQL--RFIKR-----------------------GCD 204 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcc--hhhhh--hhhcc-----------------------Ccc
Confidence 478999999999999888766554 2268888888843 22222 22222 389
Q ss_pred EEEEecCCCC-cCcCC-CCCCCCCEEE
Q 029806 130 MIVVTDACLP-LLSSG-ESAISARVLI 154 (187)
Q Consensus 130 iLv~Td~~~~-~~~rG-lDi~~v~~VI 154 (187)
|||||.--+. +..+| +.++++.++|
T Consensus 205 IlvaTpGrL~d~~e~g~i~l~~~k~~v 231 (482)
T KOG0335|consen 205 ILVATPGRLKDLIERGKISLDNCKFLV 231 (482)
T ss_pred EEEecCchhhhhhhcceeehhhCcEEE
Confidence 9999964221 14444 5566666443
No 315
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=32.91 E-value=2.2e+02 Score=21.70 Aligned_cols=64 Identities=14% Similarity=0.258 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEE-EeccCCHHHHHHHHHHHhcc
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSS-LHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~-lhg~~~~~eR~~~l~~Fr~~ 103 (187)
+++.++++... ..+.++.++-.+...++.+...|.+. +++.+.. .||-+++.+-..+++..++.
T Consensus 35 dl~~~l~~~~~---~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~ 100 (172)
T PF03808_consen 35 DLFPDLLRRAE---QRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS 100 (172)
T ss_pred HHHHHHHHHHH---HcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc
Confidence 44445554321 23468888888989999999999876 2366664 55668888889999988875
No 316
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=32.50 E-value=2.7e+02 Score=22.46 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHH
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
..+...++...+ .+-..+.||.|. ..+++.+.+...+ +...=|||+.+.+.-.++-++.
T Consensus 39 s~~~a~~i~~~v----~~~~~VgVf~n~--~~~~i~~i~~~~~-ld~VQlHG~e~~~~~~~l~~~~ 97 (208)
T COG0135 39 SPEQAREIASAV----PKVKVVGVFVNE--SIEEILEIAEELG-LDAVQLHGDEDPEYIDQLKEEL 97 (208)
T ss_pred CHHHHHHHHHhC----CCCCEEEEECCC--CHHHHHHHHHhcC-CCEEEECCCCCHHHHHHHHhhc
Confidence 456667777662 113689999986 4677777777777 7999999998887765555554
No 317
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.78 E-value=88 Score=26.59 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=48.3
Q ss_pred CcEEEEeCChhhHHHHHHHHHc----cCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 54 LPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~----~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
..++|.|.++.-+-.+.+.... .+.+++....|+++-+.-.+.++. - -+
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~---~------------------------Ph 163 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN---C------------------------PH 163 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC---C------------------------Ce
Confidence 4577888888777666554322 245899999999987766655544 2 77
Q ss_pred EEEEecCCCCcC--cCCCCCCCCCEEE
Q 029806 130 MIVVTDACLPLL--SSGESAISARVLI 154 (187)
Q Consensus 130 iLv~Td~~~~~~--~rGlDi~~v~~VI 154 (187)
|+|.|+--+.++ .+.+++.+|.+-+
T Consensus 164 ivVgTPGrilALvr~k~l~lk~vkhFv 190 (387)
T KOG0329|consen 164 IVVGTPGRILALVRNRSLNLKNVKHFV 190 (387)
T ss_pred EEEcCcHHHHHHHHhccCchhhcceee
Confidence 899997422222 3457777777644
No 318
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=31.77 E-value=3.3e+02 Score=23.30 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=42.1
Q ss_pred eEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEE---Ee
Q 029806 80 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI---NY 156 (187)
Q Consensus 80 ~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI---~y 156 (187)
++.++....+..+=...++.|+... .+|+=++..+++|| +-
T Consensus 85 ~~gliFTn~dp~ev~k~l~~~k~~~------------------------------------~AKaG~iAp~dv~ip~G~t 128 (310)
T PTZ00135 85 NVGFVFTKDDLFEVKPVILENKVPA------------------------------------PARAGVIAPIDVVIPAGPT 128 (310)
T ss_pred CEEEEEECCCHHHHHHHHHHcCCcc------------------------------------ccccCCCCCceEEEcCCCC
Confidence 4555555556666667777776642 77888888899999 66
Q ss_pred cCCCChhHHHHhhhhc
Q 029806 157 ELPTKKETYIRRMTTC 172 (187)
Q Consensus 157 d~P~~~~~y~~R~GR~ 172 (187)
.++.+..++.|..|-.
T Consensus 129 ~~~P~~~~~fq~Lgip 144 (310)
T PTZ00135 129 GMDPSQTSFFQALGIA 144 (310)
T ss_pred CCCcchhhHHHHcCCc
Confidence 7777889999999875
No 319
>PHA03371 circ protein; Provisional
Probab=30.76 E-value=50 Score=27.12 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=22.2
Q ss_pred CcCCCCCCCCCEE-E------------EecCCC-ChhHHHHhhhhc
Q 029806 141 LSSGESAISARVL-I------------NYELPT-KKETYIRRMTTC 172 (187)
Q Consensus 141 ~~rGlDi~~v~~V-I------------~yd~P~-~~~~y~~R~GR~ 172 (187)
+.|-+|+|+=+-+ | .|-.|. +--.|+|.|||+
T Consensus 30 aGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRA 75 (240)
T PHA03371 30 AGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRA 75 (240)
T ss_pred cCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehh
Confidence 6677777776655 4 333333 567889999998
No 320
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=30.65 E-value=1.5e+02 Score=29.06 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=32.9
Q ss_pred CCcEEEEeCChhhHH----HHHHHHHccCCceEEEEeccCCHHHHHHHH
Q 029806 53 GLPMIVCCSSRDELD----AVCSAVSNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~----~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
+.++-|.+.|.--+. ++...+...| +.+..+.|+|+.++|...+
T Consensus 122 G~~V~IvTpn~yLA~rd~e~~~~l~~~LG-lsv~~i~~~~~~~er~~~y 169 (830)
T PRK12904 122 GKGVHVVTVNDYLAKRDAEWMGPLYEFLG-LSVGVILSGMSPEERREAY 169 (830)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHhhcC-CeEEEEcCCCCHHHHHHhc
Confidence 456778888875554 4444445557 8999999999999988775
No 321
>PRK13720 modulator of post-segregation killing protein; Provisional
Probab=30.27 E-value=61 Score=21.06 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCC
Q 029806 88 LAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK 161 (187)
Q Consensus 88 ~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~ 161 (187)
|+++.+..++-++..|+ +.+++..+...||+-+- |-+++|.-.|..
T Consensus 1 M~~QhQdsLLP~~~QGe---------------egHET~~Krp~LV~inR-------------v~h~V~IH~pDp 46 (70)
T PRK13720 1 MSSQHQDSLLPRFAQGE---------------EGHETTTKRPCLVCVDR-------------VSHTVDIHLSDT 46 (70)
T ss_pred CcchhhccccchhhcCc---------------ccccccccCceEEEeee-------------eeeEEeeccCCC
Confidence 34455556666666664 45666677888887766 677888877753
No 322
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=29.99 E-value=2.6e+02 Score=21.64 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=31.0
Q ss_pred CCCcEEEEeCC--------hhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 52 PGLPMIVCCSS--------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 52 ~~~k~IVF~~~--------~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
+..+++|+.|+ ...++.+.+.| | |+ +..|+...+.-+.++++-|+..
T Consensus 76 ~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---g-Ip-vl~h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 76 GKDRVLIVSNSAGSSDDPDGERAEALEKAL---G-IP-VLRHRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred CCCeEEEEECCCCcccCccHHHHHHHHHhh---C-Cc-EEEeCCCCCccHHHHHHHHhhc
Confidence 34589999998 45556666555 4 44 4456555556677888888764
No 323
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=29.80 E-value=1e+02 Score=27.01 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=30.5
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCce-EEEEeccCC
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLA 89 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~-~~~lhg~~~ 89 (187)
..+++++|.+-.+....+.+|.+.|+-. +..|.|+|.
T Consensus 332 ~~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 332 GDNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CCcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 3489999999999999999999988522 688888874
No 324
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=28.89 E-value=1.1e+02 Score=28.63 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 38 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 38 ~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.|.+++... . -.+.+++|+||++-..+....-.|+..|+-.+..+.|++
T Consensus 210 el~~~~~~~-G-i~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw 258 (610)
T PRK09629 210 DMPEILRDL-G-ITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSW 258 (610)
T ss_pred HHHHHHHHc-C-CCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCH
Confidence 455555552 1 245689999999987777777788888853577888875
No 325
>PRK01172 ski2-like helicase; Provisional
Probab=28.75 E-value=2.1e+02 Score=26.84 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=37.6
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHc---cCCceEEEEeccCCH
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAE 90 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~---~~~i~~~~lhg~~~~ 90 (187)
..+..+...-|.-. +.-+++.+. .+.++|+.++++.-+.+.++.+.+ .| +.+..++|+.+.
T Consensus 40 vlv~apTGSGKTl~a~lail~~l~----~~~k~v~i~P~raLa~q~~~~~~~l~~~g-~~v~~~~G~~~~ 104 (674)
T PRK01172 40 VIVSVPTAAGKTLIAYSAIYETFL----AGLKSIYIVPLRSLAMEKYEELSRLRSLG-MRVKISIGDYDD 104 (674)
T ss_pred EEEECCCCchHHHHHHHHHHHHHH----hCCcEEEEechHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCC
Confidence 34444444445543 223334322 246899999999888887776653 35 578888888654
No 326
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=28.63 E-value=3.5e+02 Score=22.63 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=39.5
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhc
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~ 102 (187)
+..+|+...+.+..+++++.|.....+.+..+--|++..+-...+.....
T Consensus 30 g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 30 GYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH
Confidence 57889999999999999999987644788899999877666665555443
No 327
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=28.14 E-value=2.3e+02 Score=22.97 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeC-----ChhhHHHHHHHHHccCCceEEEEecc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSD 87 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~-----~~~~~~~l~~~L~~~~~i~~~~lhg~ 87 (187)
|+..+.++...+. .++++||+| |.++..++.+...... +.+..+-..
T Consensus 149 ki~~~lki~~~l~-----~kki~ifvNl~~YLt~eei~el~~~i~~~~-~~vlliE~~ 200 (216)
T TIGR01866 149 KCLEILQIFKELT-----KKKLFIFINSGAFLTKDELAELQKFISYTK-LTVLFLEPR 200 (216)
T ss_pred HHHHHHHHHHHHh-----cCcEEEEEcHHHhCCHHHHHHHHHHHHHhc-ccEEEEecc
Confidence 6666666666633 489999999 5677888888887766 677777543
No 328
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=27.72 E-value=2.6e+02 Score=20.85 Aligned_cols=51 Identities=16% Similarity=0.019 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+.+.++++.. .-.-.++++.|+-.+....+-++..|.+.| ..+...|...
T Consensus 12 ~~a~~~ll~~~-~~~~~gk~v~VvGrs~~vG~pla~lL~~~g-atV~~~~~~t 62 (140)
T cd05212 12 AKAVKELLNKE-GVRLDGKKVLVVGRSGIVGAPLQCLLQRDG-ATVYSCDWKT 62 (140)
T ss_pred HHHHHHHHHHc-CCCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEeCCCC
Confidence 45566777763 224567899999999999999999999888 5899999754
No 329
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=27.39 E-value=1.6e+02 Score=18.38 Aligned_cols=44 Identities=5% Similarity=0.037 Sum_probs=28.9
Q ss_pred EEEEe-CChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHH
Q 029806 56 MIVCC-SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 56 ~IVF~-~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
+.||. +....+.....+|.+.+ +....+.=+.+.+.+.++.+..
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~-i~~~~i~i~~~~~~~~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKG-VDYEEIDVDGDPALREEMINRS 46 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHh
Confidence 44554 45567778888888887 7777777666655555544443
No 330
>PTZ00062 glutaredoxin; Provisional
Probab=27.09 E-value=3.3e+02 Score=21.77 Aligned_cols=42 Identities=7% Similarity=0.023 Sum_probs=29.4
Q ss_pred CCcEEEEeC------ChhhHHHHHHHHHccCCceEEEEeccCCHHHHHH
Q 029806 53 GLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTL 95 (187)
Q Consensus 53 ~~k~IVF~~------~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~ 95 (187)
..+++||.. +..-+..+.++|...+ +....+.=..+.+.|..
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~-i~y~~~DI~~d~~~~~~ 159 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSG-VKYETYNIFEDPDLREE 159 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcC-CCEEEEEcCCCHHHHHH
Confidence 389999977 4667788999999887 66665554444444444
No 331
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=26.89 E-value=1.8e+02 Score=20.07 Aligned_cols=57 Identities=7% Similarity=0.141 Sum_probs=35.3
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCC------hhhHHHHHHHHHccC
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSS------RDELDAVCSAVSNLA 77 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~------~~~~~~l~~~L~~~~ 77 (187)
...+++....++..+ ++..+.+.|+.... ..+...+.+|+|+ ..++..|++.+...|
T Consensus 12 aPilk~~k~kI~~~~-~f~~vi~fLrk~Lk-~~~~~slFlYin~sFaPspDe~vg~L~~~f~~~~ 74 (87)
T PF04110_consen 12 APILKQKKFKISASQ-TFATVIAFLRKKLK-LKPSDSLFLYINNSFAPSPDETVGDLYRCFGTNG 74 (87)
T ss_dssp ----S--EEEEETTS-BTHHHHHHHHHHCT-----SS-EEEEEEEE---TTSBHHHHHHHH-BTT
T ss_pred CccccCcEEEECCCC-chHHHHHHHHHHhC-CccCCeEEEEEcCccCCCchhHHHHHHHHhCCCC
Confidence 344566677888877 99999999987443 3356788888876 467788888887665
No 332
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=26.84 E-value=1.4e+02 Score=29.34 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=25.5
Q ss_pred CCCcEEEEe-CChhhHHHHHHHHHccC--------------------------CceEEEEeccCCHHH
Q 029806 52 PGLPMIVCC-SSRDELDAVCSAVSNLA--------------------------DISFSSLHSDLAETE 92 (187)
Q Consensus 52 ~~~k~IVF~-~~~~~~~~l~~~L~~~~--------------------------~i~~~~lhg~~~~~e 92 (187)
...+.+||+ +++.-++.+++.+.+.+ .+++..++|+.+.+.
T Consensus 60 ~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~ 127 (844)
T TIGR02621 60 KVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADND 127 (844)
T ss_pred cccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHH
Confidence 345677766 88776665555443321 267888889877543
No 333
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=26.56 E-value=2.3e+02 Score=27.64 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=32.7
Q ss_pred CCCcEEEEeCChhhHHHHHHH----HHccCCceEEEEeccCC-HHHHHH
Q 029806 52 PGLPMIVCCSSRDELDAVCSA----VSNLADISFSSLHSDLA-ETERTL 95 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~----L~~~~~i~~~~lhg~~~-~~eR~~ 95 (187)
.+.++.|.+.|..-+..-+++ +...| +.+..+.|+++ .++|..
T Consensus 118 ~G~~v~VvTpt~~LA~qd~e~~~~l~~~lG-l~v~~i~g~~~~~~~r~~ 165 (790)
T PRK09200 118 EGKGVHLITVNDYLAKRDAEEMGQVYEFLG-LTVGLNFSDIDDASEKKA 165 (790)
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCcHHHHHH
Confidence 357899999998766555544 44557 89999999999 777764
No 334
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=26.49 E-value=1.3e+02 Score=28.27 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCCh-hhHHHHHHHHHccCCceEEEEeccCC
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSR-DELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~-~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+.+.+++.++- ..+..++||||++. ..+..++..|...|+-++..|.|+++
T Consensus 67 ~~l~~~l~~lG--I~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~ 118 (610)
T PRK09629 67 ADLEQLFGELG--HNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVL 118 (610)
T ss_pred HHHHHHHHHcC--CCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHH
Confidence 34555666532 25678999999865 35567777788888546888999853
No 335
>PF09711 Cas_Csn2: CRISPR-associated protein (Cas_Csn2); InterPro: IPR010146 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Csn2 family of Cas proteins, which are found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.; PDB: 3TOC_A 3QHQ_A 3S5U_C.
Probab=25.18 E-value=3e+02 Score=21.84 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeC-----ChhhHHHHHHHHHccCCceEEEEecc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSD 87 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~-----~~~~~~~l~~~L~~~~~i~~~~lhg~ 87 (187)
-++.+.+.++-... -..++++||+| |.....++.+...-.. +++..+-..
T Consensus 114 l~eklieyl~v~~~--L~~kKllvfVNl~~YLT~eEl~el~e~i~~~~-i~VL~IE~r 168 (188)
T PF09711_consen 114 LFEKLIEYLKVFSE--LLKKKLLVFVNLRSYLTEEELQELYEYIKYNK-IKVLFIENR 168 (188)
T ss_dssp HHHHHHHHHHHHHH---TT--EEEEESGGGGS-HHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred HHHHHHHHHHHHHH--HcCCCEEEEEchHHhcCHHHHHHHHHHHHHhC-CeEEEEecc
Confidence 34444444443222 44589999999 5567788888887776 789888764
No 336
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=25.16 E-value=2.7e+02 Score=21.47 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=38.0
Q ss_pred ceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHc
Q 029806 23 RHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN 75 (187)
Q Consensus 23 ~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~ 75 (187)
.|......+++..++.+..++++-.. .+.+|+++++.....+.+.+.|++
T Consensus 20 ~H~c~~Y~~~~e~~~~~~~Fi~~GL~---~ge~~l~v~~~~~~~~~l~~~L~~ 69 (191)
T PF14417_consen 20 DHICAFYDDEEELLEVLVPFIREGLA---RGERCLYVAPDPRRVEELRDELRK 69 (191)
T ss_pred ceEEEEECCHHHHHHHHHHHHHHHHH---CCCeEEEEECCCCCHHHHHHHHHh
Confidence 66666667777688999999987333 467899988867788888888854
No 337
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=25.10 E-value=1.6e+02 Score=22.59 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=28.3
Q ss_pred HHH-HHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC
Q 029806 35 KME-TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA 77 (187)
Q Consensus 35 Kl~-~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~ 77 (187)
|.. .|-+++++-. ....++||..+|+..+++++++|+..+
T Consensus 17 KTr~vlp~~~~~~i---~~~~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 17 KTRRVLPEIVREAI---KRRLRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp TTTTHHHHHHHHHH---HTT--EEEEESSHHHHHHHHHHTTTSS
T ss_pred CcccccHHHHHHHH---HccCeEEEecccHHHHHHHHHHHhcCC
Confidence 443 5666666522 236899999999999999999997643
No 338
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=24.79 E-value=4.9e+02 Score=23.06 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=42.7
Q ss_pred CceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChh----hHHHHHHHHHccCCceEEE---EeccCCHHHHH
Q 029806 22 PRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRD----ELDAVCSAVSNLADISFSS---LHSDLAETERT 94 (187)
Q Consensus 22 i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~----~~~~l~~~L~~~~~i~~~~---lhg~~~~~eR~ 94 (187)
-..+|..++.+..-...+.++++. ...+++.+.....+ .++.+.+.+.+.| +.+.. +.......+-.
T Consensus 148 ~~~ffRt~psd~~qa~ai~~ll~~-----~~W~~Vaii~~~~~yG~~~~~~~~~~~~~~g-i~i~~~~~i~~~~~~~d~~ 221 (458)
T cd06375 148 YDYFARTVPPDFYQAKAMAEILRF-----FNWTYVSTVASEGDYGETGIEAFEQEARLRN-ICIATSEKVGRSADRKSYD 221 (458)
T ss_pred CCCeEEecCCcHHHHHHHHHHHHH-----CCCeEEEEEEeCchHHHHHHHHHHHHHHHCC-eeEEEEEEecCCCCHHHHH
Confidence 345677777776566778888866 23566666554333 4556666666666 45432 22222334445
Q ss_pred HHHHHHhc
Q 029806 95 LILEEFRH 102 (187)
Q Consensus 95 ~~l~~Fr~ 102 (187)
.++++.++
T Consensus 222 ~~l~~l~~ 229 (458)
T cd06375 222 SVIRKLLQ 229 (458)
T ss_pred HHHHHHhc
Confidence 56777654
No 339
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=24.76 E-value=1.8e+02 Score=22.79 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCC-c-eEEEEeccCCHHHHHHHHHHHhccc
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-I-SFSSLHSDLAETERTLILEEFRHTA 104 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~-i-~~~~lhg~~~~~eR~~~l~~Fr~~~ 104 (187)
-+.|.+.+.. ...++++++++.... -..+.+.|++.|. + .+..+.. .+...+....+.|..+.
T Consensus 104 s~~L~~~l~~----~~~~~~vl~~~g~~~-~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~ 168 (231)
T PF02602_consen 104 SEGLAELLKE----QLRGKRVLILRGEGG-RPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGE 168 (231)
T ss_dssp HHHHHGGHHH----CCTTEEEEEEESSSS-CHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh----hCCCCeEEEEcCCCc-cHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCC
Confidence 4566666665 233477888777654 6678889988772 1 2233334 66778888888998874
No 340
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=24.50 E-value=5.1e+02 Score=26.18 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=28.5
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHH
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
..+++||.|+..-.-.|..+.-.-.+.+.+..+||. ..+|....+.+
T Consensus 218 ~~gp~LIVvP~SlL~nW~~Ei~kw~p~l~v~~~~G~--~~eR~~~~~~~ 264 (1033)
T PLN03142 218 ITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGN--PEERAHQREEL 264 (1033)
T ss_pred CCCCEEEEeChHHHHHHHHHHHHHCCCCceEEEeCC--HHHHHHHHHHH
Confidence 347889999976554554443333344578888885 45565555443
No 341
>PRK10824 glutaredoxin-4; Provisional
Probab=24.34 E-value=2.8e+02 Score=20.04 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=27.3
Q ss_pred CcEEEEeC------ChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHH
Q 029806 54 LPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 54 ~k~IVF~~------~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
.+++||.. ..--+....+.|...+ +....+.=.-+.+.|. .+.++
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-i~~~~idi~~d~~~~~-~l~~~ 65 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACG-ERFAYVDILQNPDIRA-ELPKY 65 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcC-CCceEEEecCCHHHHH-HHHHH
Confidence 89999976 3557778888888777 4544443333333333 34444
No 342
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=24.27 E-value=2.2e+02 Score=26.63 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=33.2
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHHHHHhc
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRH 102 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l~~Fr~ 102 (187)
....+.+|.|+.++-.+|+-+.-+.- |..++..+||. .|...+++|.+
T Consensus 229 ~~ra~tLVvaP~VAlmQW~nEI~~~T~gslkv~~YhG~----~R~~nikel~~ 277 (791)
T KOG1002|consen 229 VDRAPTLVVAPTVALMQWKNEIERHTSGSLKVYIYHGA----KRDKNIKELMN 277 (791)
T ss_pred cccCCeeEEccHHHHHHHHHHHHHhccCceEEEEEecc----cccCCHHHhhc
Confidence 34578999999999888877654422 55788899985 34444555544
No 343
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=23.92 E-value=3.4e+02 Score=20.85 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhh-HHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDE-LDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~-~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
.....++++.+.. .-.+++++|.=. -.. -..+++.|.+.| ..+..++... +++ .+.-+
T Consensus 28 ~~a~v~l~~~~~~-~l~gk~vlViG~-G~~~G~~~a~~L~~~g-~~V~v~~r~~--~~l----~~~l~------------ 86 (168)
T cd01080 28 PAGILELLKRYGI-DLAGKKVVVVGR-SNIVGKPLAALLLNRN-ATVTVCHSKT--KNL----KEHTK------------ 86 (168)
T ss_pred HHHHHHHHHHcCC-CCCCCEEEEECC-cHHHHHHHHHHHhhCC-CEEEEEECCc--hhH----HHHHh------------
Confidence 3455666766332 334566666544 444 445899998888 5777777653 222 22222
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChh
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKE 163 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~ 163 (187)
..+++|++.-.-.++.+. ++..-.++|+...|++.+
T Consensus 87 ------------~aDiVIsat~~~~ii~~~-~~~~~~viIDla~prdvd 122 (168)
T cd01080 87 ------------QADIVIVAVGKPGLVKGD-MVKPGAVVIDVGINRVPD 122 (168)
T ss_pred ------------hCCEEEEcCCCCceecHH-HccCCeEEEEccCCCccc
Confidence 266666665411111111 233346889999998766
No 344
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=23.84 E-value=1.3e+02 Score=18.94 Aligned_cols=30 Identities=7% Similarity=-0.021 Sum_probs=16.6
Q ss_pred EEEEeCChhhHHHHHHHHHccCCceEEEEec
Q 029806 56 MIVCCSSRDELDAVCSAVSNLADISFSSLHS 86 (187)
Q Consensus 56 ~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg 86 (187)
.|..+++.-.++.+...|...| |.+.....
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~g-I~~~v~~~ 31 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENG-IPAFVKNE 31 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT---EE--S-
T ss_pred EEEEcCCHHHHHHHHHHHHhCC-CcEEEECC
Confidence 4566777777888888887777 66665443
No 345
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.80 E-value=3.4e+02 Score=23.20 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=31.1
Q ss_pred CCCcEEEE---eCChhhHHHHHHHHHccCC--ceEEEEeccCCHHH
Q 029806 52 PGLPMIVC---CSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETE 92 (187)
Q Consensus 52 ~~~k~IVF---~~~~~~~~~l~~~L~~~~~--i~~~~lhg~~~~~e 92 (187)
.++.+||. +.|-.++.+.++.|++.|. +.+..-||=++..-
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~a 261 (320)
T PRK02269 216 KGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPA 261 (320)
T ss_pred CCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECcccCchH
Confidence 34667765 6788889999999998763 67788898887644
No 346
>TIGR02165 cas_GSU0054 CRISPR-associated protein, GSU0054 family. This model represents a rare CRISPR-associated protein. So far, members are found in Geobacter sulfurreducens and in two unpublished genomes: Gemmata obscuriglobus and Actinomyces naeslundii.CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.
Probab=23.62 E-value=1e+02 Score=26.87 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=38.6
Q ss_pred ccccccccCCCCC----cCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCC--hhHHHHhhhhccCC
Q 029806 107 WNQKVTEQSGDES----ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTK--KETYIRRMTTCLAA 175 (187)
Q Consensus 107 ~~~~~~~~~~~~~----~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~--~~~y~~R~GR~~r~ 175 (187)
|+.+++.+||+.+ .++++...++++=..|. +|+|.+.....-|.. ..+|.+-+++..++
T Consensus 29 W~~gn~snsg~a~~a~~RteKdiRP~HLI~~sde----------lp~vhYL~~ige~~~pe~a~~~e~iv~~A~~ 93 (465)
T TIGR02165 29 WGGGNESNSGDANIADHRTEKDIRPIHLIDKSDE----------LPAVHYLWPIGDPTAPEFADHKEAIVEAAQN 93 (465)
T ss_pred hcCCCccCCCccccchhhhhccccceeeeccccc----------cccceeeeecCCCCCchHHHHHHHHHHHHhh
Confidence 4444566666665 56666666665555544 577887777665553 57899999987554
No 347
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=23.13 E-value=1.1e+02 Score=26.35 Aligned_cols=38 Identities=5% Similarity=0.066 Sum_probs=33.9
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
...+++++||----++++...+|...|+-.+.-|+|++
T Consensus 170 ~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGI 207 (308)
T COG1054 170 LKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGI 207 (308)
T ss_pred ccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchH
Confidence 45579999999999999999999999976788899996
No 348
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=23.00 E-value=3.9e+02 Score=21.20 Aligned_cols=38 Identities=18% Similarity=0.098 Sum_probs=29.6
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER 93 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR 93 (187)
-.++.||++. ..+.+.+.+...+ +.+.=|||+.+.+.-
T Consensus 53 ~~~VgVf~~~--~~~~i~~~~~~~~-~d~vQLHG~e~~~~~ 90 (207)
T PRK13958 53 IDKVCVVVNP--DLTTIEHILSNTS-INTIQLHGTESIDFI 90 (207)
T ss_pred CCEEEEEeCC--CHHHHHHHHHhCC-CCEEEECCCCCHHHH
Confidence 3679999887 5777777777777 789999999876653
No 349
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=22.89 E-value=3.6e+02 Score=20.83 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=42.5
Q ss_pred EEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhc
Q 029806 27 VAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (187)
Q Consensus 27 ~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~ 102 (187)
..+-... |...+.++.+. .+ -+...+|.|=+...+.+.+. +.| +.+.....||+.++=++-|++|++
T Consensus 102 ~eI~~gs-K~~Hf~~i~~~-tg--I~y~eMlFFDDe~~N~~~v~----~lG-V~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 102 LEIYPGS-KTTHFRRIHRK-TG--IPYEEMLFFDDESRNIEVVS----KLG-VTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp EEESSS--HHHHHHHHHHH-H-----GGGEEEEES-HHHHHHHH----TTT--EEEE-SSS--HHHHHHHHHHHHH
T ss_pred hheecCc-hHHHHHHHHHh-cC--CChhHEEEecCchhcceeeE----ecC-cEEEEeCCCCCHHHHHHHHHHHhh
Confidence 4455555 99999999876 22 24456666666655555543 357 899999999999999999999875
No 350
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=22.88 E-value=3.4e+02 Score=20.56 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=37.9
Q ss_pred EEEEccCcchHHHHHHHHHHHHhc-----CCCCCCcEEEEeCChhhHHHHHHHHHc
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVA-----GRRPGLPMIVCCSSRDELDAVCSAVSN 75 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~-----~~~~~~k~IVF~~~~~~~~~l~~~L~~ 75 (187)
.++.-++.--|..++..++..+.. ....+.+++|.+.+...++.+...|.+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred EEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 445555555599999999888621 146779999999999999999999988
No 351
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=22.73 E-value=85 Score=21.42 Aligned_cols=40 Identities=8% Similarity=0.201 Sum_probs=21.2
Q ss_pred eCChhhHHHHHHHHHccCCceEEEEeccC----CHHHHHHHHHHHhccc
Q 029806 60 CSSRDELDAVCSAVSNLADISFSSLHSDL----AETERTLILEEFRHTA 104 (187)
Q Consensus 60 ~~~~~~~~~l~~~L~~~~~i~~~~lhg~~----~~~eR~~~l~~Fr~~~ 104 (187)
+.|..+++.| ++.| +.+..+..-. ...-|.++++.++.++
T Consensus 17 ~AT~gTa~~L----~~~G-i~~~~v~~~~~~~~~~~g~~~i~~~i~~~~ 60 (95)
T PF02142_consen 17 YATEGTAKFL----KEHG-IEVTEVVNKIGEGESPDGRVQIMDLIKNGK 60 (95)
T ss_dssp EEEHHHHHHH----HHTT---EEECCEEHSTG-GGTHCHHHHHHHHTTS
T ss_pred EEChHHHHHH----HHcC-CCceeeeeecccCccCCchhHHHHHHHcCC
Confidence 4466666554 5556 6744433222 2233446999999984
No 352
>PRK07411 hypothetical protein; Validated
Probab=22.48 E-value=1.3e+02 Score=26.52 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=31.1
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+..+++++|.+-.++...+..|.+.|+ +...+.|++.
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~-~~~~l~GG~~ 377 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGI-EGTNVKGGIT 377 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCC-CeEEecchHH
Confidence 457899999999999999999999995 6667888753
No 353
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=21.80 E-value=1.1e+02 Score=24.55 Aligned_cols=19 Identities=21% Similarity=0.649 Sum_probs=14.9
Q ss_pred EEecCCCChhHHHHhhhhc
Q 029806 154 INYELPTKKETYIRRMTTC 172 (187)
Q Consensus 154 I~yd~P~~~~~y~~R~GR~ 172 (187)
.||.+|.....|+-++-|+
T Consensus 98 ~Nf~iPa~LK~yiD~i~~a 116 (202)
T COG1182 98 YNFNIPAQLKAYIDHIAVA 116 (202)
T ss_pred cccCCCHHHHHHHHHHhcC
Confidence 6899999888887766554
No 354
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=21.68 E-value=3.5e+02 Score=23.35 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=46.9
Q ss_pred eEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEE---Ee
Q 029806 80 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI---NY 156 (187)
Q Consensus 80 ~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI---~y 156 (187)
.+.++.-.++..+-...++.|+... .+|.=++..+++|| +-
T Consensus 92 nvgliFTn~~p~ev~~~l~~~k~~a------------------------------------~AraG~IAp~dVvvpaG~T 135 (323)
T PTZ00240 92 NTGLIFTNNEVQEITSVLDSHRVKA------------------------------------PARVGAIAPCDVIVPAGST 135 (323)
T ss_pred CEEEEEeCCCHHHHHHHHHHcCCcc------------------------------------cccCCCCCCceEEECCCCC
Confidence 6777777888888888888888864 67777888889999 66
Q ss_pred cCCCChhHHHHhhhhc
Q 029806 157 ELPTKKETYIRRMTTC 172 (187)
Q Consensus 157 d~P~~~~~y~~R~GR~ 172 (187)
.++.+..++.|..|-.
T Consensus 136 ~~~P~~~s~fq~LGIp 151 (323)
T PTZ00240 136 GMEPTQTSFFQALNIA 151 (323)
T ss_pred CCCCcchHHHHHcCCC
Confidence 7788889999999875
No 355
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=21.44 E-value=3.9e+02 Score=21.18 Aligned_cols=63 Identities=8% Similarity=-0.018 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEE--EEe-ccCCHHHHHHHHHHHhcc
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS--SLH-SDLAETERTLILEEFRHT 103 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~--~lh-g~~~~~eR~~~l~~Fr~~ 103 (187)
-+.|.+++... ..+++++++++..... +.+.+.|.+.| +.+. .++ ............+.++++
T Consensus 104 ~e~L~~~~~~~---~~~~~~vL~~rg~~~r-~~l~~~L~~~G-~~v~~~~vY~~~~~~~~~~~~~~~l~~~ 169 (240)
T PRK09189 104 GVRLAETVAAA---LAPTARLLYLAGRPRA-PVFEDRLAAAG-IPFRVAECYDMLPVMYSPATLSAILGGA 169 (240)
T ss_pred HHHHHHHHHHh---cCCCCcEEEeccCccc-chhHHHHHhCC-CeeEEEEEEEeecCCCChHHHHHHHhcC
Confidence 44455555431 1345778888776644 88999998887 3432 233 222222223455666665
No 356
>PLN02363 phosphoribosylanthranilate isomerase
Probab=21.40 E-value=4.4e+02 Score=21.80 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETE 92 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~e 92 (187)
..++.||++. ..+++.+.+...+ +.+.=|||+.+.+.
T Consensus 100 ~~~VgVfv~~--~~~~I~~~~~~~~-ld~VQLHG~e~~~~ 136 (256)
T PLN02363 100 AKPVGVFVDD--DANTILRAADSSD-LELVQLHGNGSRAA 136 (256)
T ss_pred ccEEEEEeCC--CHHHHHHHHHhcC-CCEEEECCCCCHHH
Confidence 3579999876 4667777777777 68999999887655
No 357
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=21.19 E-value=3.9e+02 Score=26.61 Aligned_cols=46 Identities=11% Similarity=0.038 Sum_probs=35.7
Q ss_pred CCCcEEEEeCChh----hHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 52 PGLPMIVCCSSRD----ELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 52 ~~~k~IVF~~~~~----~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
.+.++-|.+.+.- .++++...+...| +.+..+.++++.++|...++
T Consensus 122 ~G~~VhvvT~ndyLA~RD~e~m~~l~~~lG-l~v~~i~~~~~~~err~~Y~ 171 (913)
T PRK13103 122 SGKGVHVVTVNDYLARRDANWMRPLYEFLG-LSVGIVTPFQPPEEKRAAYA 171 (913)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHhcccC-CEEEEECCCCCHHHHHHHhc
Confidence 3577888887754 4556666666778 89999999999999997776
No 358
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.98 E-value=4.1e+02 Score=22.90 Aligned_cols=61 Identities=10% Similarity=0.160 Sum_probs=42.2
Q ss_pred CCcEEEE---eCChhhHHHHHHHHHccCC--ceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 029806 53 GLPMIVC---CSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (187)
Q Consensus 53 ~~k~IVF---~~~~~~~~~l~~~L~~~~~--i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (187)
++.+||. +.|-.++...++.|++.|. +.+..-||=++......+.+.+.++ .
T Consensus 218 Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~~~~~~-----------------------~ 274 (332)
T PRK00553 218 NKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKK-----------------------L 274 (332)
T ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeecCchHHHHHHhccccC-----------------------C
Confidence 4566665 6677888899999988763 5677788877765544444444443 3
Q ss_pred eeEEEEecC
Q 029806 128 SHMIVVTDA 136 (187)
Q Consensus 128 ~~iLv~Td~ 136 (187)
++-+++||.
T Consensus 275 i~~iv~Tnt 283 (332)
T PRK00553 275 IDKLFVSNS 283 (332)
T ss_pred CCEEEEeCC
Confidence 777888888
No 359
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.94 E-value=4e+02 Score=20.93 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=33.4
Q ss_pred CCcEEEEeCCh-----hhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 53 GLPMIVCCSSR-----DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 53 ~~k~IVF~~~~-----~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
.+++|||..+. ..+..+.+.|.+.+ |.+..+.=+-. .+-...++.|-+.
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk~~-I~v~vI~~G~~-~~~~~~l~~~~~~ 160 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKKNN-VSVDIINFGEI-DDNTEKLTAFIDA 160 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHHcC-CeEEEEEeCCC-CCCHHHHHHHHHH
Confidence 35888887776 45557778888877 78777764433 2334778888775
No 360
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=20.52 E-value=6.2e+02 Score=22.60 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=47.7
Q ss_pred EEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHH
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETER 93 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR 93 (187)
....+...- |.+.+.+-++... +.+..+-|=.+.++-+-+|+..|+.. ..+.+..|||+.++.-|
T Consensus 120 lv~AV~GaG-KTEMif~~i~~al---~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr 185 (441)
T COG4098 120 LVWAVTGAG-KTEMIFQGIEQAL---NQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFR 185 (441)
T ss_pred EEEEecCCC-chhhhHHHHHHHH---hcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhcc
Confidence 333444444 7888888777633 45788888899999999999988754 22679999999877665
No 361
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=20.28 E-value=4.5e+02 Score=25.61 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=35.7
Q ss_pred CCCcEEEEeCCh----hhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 52 PGLPMIVCCSSR----DELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 52 ~~~k~IVF~~~~----~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
.+.++-|.+.+. ..++++...+...| +.+..+.++++.++|...++
T Consensus 118 ~G~~VhvvT~NdyLA~RDae~m~~ly~~LG-Lsvg~i~~~~~~~err~aY~ 167 (764)
T PRK12326 118 QGRRVHVITVNDYLARRDAEWMGPLYEALG-LTVGWITEESTPEERRAAYA 167 (764)
T ss_pred cCCCeEEEcCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCCCHHHHHHHHc
Confidence 357888888775 44566666677778 89999999999999987765
No 362
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=20.23 E-value=2e+02 Score=26.37 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcC-----CCCCCcEEEEeCChhhHHHHHHHHHcc-----CCceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 36 METLVELLHLVVAG-----RRPGLPMIVCCSSRDELDAVCSAVSNL-----ADISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 36 l~~L~~ll~~~~~~-----~~~~~k~IVF~~~~~~~~~l~~~L~~~-----~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
...|..+++.+... ...+...+|.++|+.-++.++..+.++ ..+.+.-+.++|+...-. .+..+
T Consensus 71 ~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d-- 144 (569)
T KOG0346|consen 71 AAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMD-- 144 (569)
T ss_pred HHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHcc--
Confidence 44555555554432 223467899999999998888877664 136777788888876644 34444
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCC
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDAC 137 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~ 137 (187)
..+|+|+|+.+
T Consensus 145 ---------------------~pdIvV~TP~~ 155 (569)
T KOG0346|consen 145 ---------------------LPDIVVATPAK 155 (569)
T ss_pred ---------------------CCCeEEeChHH
Confidence 37899999864
No 363
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=20.06 E-value=2.1e+02 Score=24.15 Aligned_cols=80 Identities=14% Similarity=0.302 Sum_probs=47.4
Q ss_pred CCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 50 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 50 ~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
..|.-|+||||+...-.-...+.+++..- -+.++-|.+.+. -.++.. ..+
T Consensus 59 dDp~mKaIVv~q~vpGt~~af~kIkekRp-DIl~ia~~~~ED--p~~i~~---------------------------~aD 108 (275)
T PF12683_consen 59 DDPDMKAIVVSQAVPGTAEAFRKIKEKRP-DILLIAGEPHED--PEVISS---------------------------AAD 108 (275)
T ss_dssp G-TTEEEEEEE-SS---HHHHHHHHHH-T-TSEEEESS--S---HHHHHH---------------------------HSS
T ss_pred cCCCccEEEEeCCCcchHHHHHHHHhcCC-CeEEEcCCCcCC--HHHHhh---------------------------ccC
Confidence 36788999999988776666666665431 466666664332 122222 277
Q ss_pred EEEEecCCCCcCcCCCCCC------CCCEEEEecCCCChh
Q 029806 130 MIVVTDACLPLLSSGESAI------SARVLINYELPTKKE 163 (187)
Q Consensus 130 iLv~Td~~~~~~~rGlDi~------~v~~VI~yd~P~~~~ 163 (187)
+.+.+|. .+||-.++ .+...|||.+|++..
T Consensus 109 i~~~~D~----~~~G~~i~~~Ak~mGAktFVh~sfprhms 144 (275)
T PF12683_consen 109 IVVNPDE----ISRGYTIVWAAKKMGAKTFVHYSFPRHMS 144 (275)
T ss_dssp EEEE--H----HHHHHHHHHHHHHTT-S-EEEEEETTGGG
T ss_pred eEeccch----hhccHHHHHHHHHcCCceEEEEechhhcc
Confidence 8888888 89998876 477899999999765
Done!