Query 029806
Match_columns 187
No_of_seqs 152 out of 1532
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 05:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjv_A ATP-dependent RNA helic 100.0 6.9E-30 2.4E-34 195.7 17.0 134 16-183 4-139 (163)
2 1t5i_A C_terminal domain of A 100.0 6.5E-30 2.2E-34 197.9 16.5 133 18-184 2-136 (172)
3 2rb4_A ATP-dependent RNA helic 100.0 1.2E-29 4E-34 196.4 15.7 133 18-183 4-144 (175)
4 2jgn_A DBX, DDX3, ATP-dependen 100.0 3.7E-29 1.3E-33 196.0 15.5 136 15-183 13-150 (185)
5 1fuk_A Eukaryotic initiation f 100.0 7.2E-29 2.4E-33 190.2 16.0 132 20-184 2-135 (165)
6 3eaq_A Heat resistant RNA depe 100.0 4.3E-28 1.5E-32 193.6 16.5 132 19-184 3-136 (212)
7 2p6n_A ATP-dependent RNA helic 100.0 2.1E-28 7.1E-33 192.8 14.3 133 17-184 25-159 (191)
8 3i32_A Heat resistant RNA depe 100.0 2.3E-27 8E-32 199.2 15.9 130 21-184 2-133 (300)
9 2yjt_D ATP-dependent RNA helic 99.9 3.6E-29 1.2E-33 192.9 0.0 131 20-183 2-134 (170)
10 2db3_A ATP-dependent RNA helic 99.9 1.6E-25 5.5E-30 195.4 17.8 133 17-184 271-405 (434)
11 2i4i_A ATP-dependent RNA helic 99.9 8.1E-25 2.8E-29 187.4 14.8 134 17-183 245-380 (417)
12 2j0s_A ATP-dependent RNA helic 99.9 1.1E-24 3.9E-29 186.5 14.7 135 17-184 245-381 (410)
13 3fht_A ATP-dependent RNA helic 99.9 4E-24 1.4E-28 182.3 15.2 134 17-183 235-376 (412)
14 1xti_A Probable ATP-dependent 99.9 9.8E-24 3.4E-28 179.0 17.5 134 17-184 220-355 (391)
15 1s2m_A Putative ATP-dependent 99.9 1E-23 3.5E-28 179.9 16.4 133 17-183 228-362 (400)
16 3pey_A ATP-dependent RNA helic 99.9 7.6E-24 2.6E-28 179.2 15.1 134 17-183 212-351 (395)
17 3eiq_A Eukaryotic initiation f 99.9 3.5E-24 1.2E-28 183.0 13.0 136 16-184 248-385 (414)
18 3i5x_A ATP-dependent RNA helic 99.9 2.9E-23 1E-27 185.4 17.9 140 16-183 302-446 (563)
19 3sqw_A ATP-dependent RNA helic 99.9 4.6E-23 1.6E-27 185.6 17.9 140 16-183 251-395 (579)
20 1oyw_A RECQ helicase, ATP-depe 99.9 7.9E-23 2.7E-27 182.8 18.4 124 26-183 215-338 (523)
21 1hv8_A Putative ATP-dependent 99.9 8E-23 2.7E-27 171.3 14.8 130 19-183 211-342 (367)
22 2v1x_A ATP-dependent DNA helic 99.9 2.8E-22 9.6E-27 181.8 17.5 118 35-184 253-370 (591)
23 4a2p_A RIG-I, retinoic acid in 99.9 6.8E-23 2.3E-27 181.2 10.3 121 33-183 371-505 (556)
24 3fmp_B ATP-dependent RNA helic 99.9 2.4E-24 8.1E-29 189.2 0.0 135 17-184 302-444 (479)
25 4gl2_A Interferon-induced heli 99.9 1.1E-22 3.9E-27 185.6 9.6 120 35-184 382-516 (699)
26 1wp9_A ATP-dependent RNA helic 99.9 5.5E-22 1.9E-26 170.4 12.5 124 31-183 340-472 (494)
27 3tbk_A RIG-I helicase domain; 99.9 1.1E-22 3.6E-27 179.4 8.0 123 33-184 370-505 (555)
28 1fuu_A Yeast initiation factor 99.9 1.4E-23 4.7E-28 178.0 0.0 133 18-183 229-363 (394)
29 3oiy_A Reverse gyrase helicase 99.9 4.3E-21 1.5E-25 165.2 13.9 115 17-175 226-348 (414)
30 2ykg_A Probable ATP-dependent 99.9 1.1E-21 3.6E-26 179.2 9.9 122 32-182 378-512 (696)
31 2z0m_A 337AA long hypothetical 99.8 4.5E-21 1.6E-25 159.1 11.8 125 19-183 194-320 (337)
32 4a2q_A RIG-I, retinoic acid in 99.8 2.4E-21 8.1E-26 180.5 10.9 122 33-184 612-747 (797)
33 3fho_A ATP-dependent RNA helic 99.8 6.1E-22 2.1E-26 176.1 6.6 135 17-184 326-468 (508)
34 1z5z_A Helicase of the SNF2/RA 99.8 1.6E-20 5.3E-25 155.4 12.6 114 33-176 95-210 (271)
35 4a2w_A RIG-I, retinoic acid in 99.8 5.2E-21 1.8E-25 181.2 11.0 121 33-183 612-746 (936)
36 1tf5_A Preprotein translocase 99.8 9.7E-21 3.3E-25 176.0 11.7 126 26-185 409-544 (844)
37 2d7d_A Uvrabc system protein B 99.8 3.7E-20 1.2E-24 169.9 15.4 118 35-183 430-553 (661)
38 1c4o_A DNA nucleotide excision 99.8 4.1E-20 1.4E-24 169.6 15.2 118 35-183 424-547 (664)
39 3jux_A Protein translocase sub 99.8 6.8E-20 2.3E-24 168.2 14.5 126 26-185 451-586 (822)
40 3dmq_A RNA polymerase-associat 99.8 2.1E-19 7.3E-24 170.8 13.6 119 33-182 488-609 (968)
41 4ddu_A Reverse gyrase; topoiso 99.8 2.2E-19 7.6E-24 172.5 12.3 100 17-160 283-388 (1104)
42 2xau_A PRE-mRNA-splicing facto 99.8 9.5E-20 3.2E-24 169.7 7.7 132 20-181 272-438 (773)
43 2fsf_A Preprotein translocase 99.8 7.5E-19 2.6E-23 163.3 13.0 126 26-185 418-582 (853)
44 2fwr_A DNA repair protein RAD2 99.8 2.8E-19 9.5E-24 156.5 8.6 105 34-176 335-439 (472)
45 1yks_A Genome polyprotein [con 99.8 2.9E-19 1E-23 156.5 7.9 98 53-183 177-296 (440)
46 2jlq_A Serine protease subunit 99.8 6.9E-19 2.3E-23 154.5 9.7 92 53-177 188-299 (451)
47 2whx_A Serine protease/ntpase/ 99.8 9.8E-19 3.3E-23 159.3 11.0 98 53-183 355-475 (618)
48 1gku_B Reverse gyrase, TOP-RG; 99.8 9.8E-19 3.3E-23 167.5 10.2 98 18-159 250-352 (1054)
49 2z83_A Helicase/nucleoside tri 99.8 2.5E-19 8.4E-24 157.7 5.5 99 53-184 190-311 (459)
50 1nkt_A Preprotein translocase 99.8 3.2E-18 1.1E-22 159.6 12.8 126 26-185 437-616 (922)
51 3l9o_A ATP-dependent RNA helic 99.8 2.1E-18 7.2E-23 165.8 12.0 106 51-184 439-593 (1108)
52 2eyq_A TRCF, transcription-rep 99.8 2.2E-18 7.6E-23 166.2 10.9 130 19-184 786-918 (1151)
53 2wv9_A Flavivirin protease NS2 99.7 2.2E-18 7.4E-23 158.4 9.4 98 53-183 410-530 (673)
54 2xgj_A ATP-dependent RNA helic 99.7 5E-18 1.7E-22 162.0 12.2 105 52-183 342-496 (1010)
55 1z63_A Helicase of the SNF2/RA 99.7 1.4E-17 4.8E-22 146.6 13.6 114 33-176 324-439 (500)
56 3h1t_A Type I site-specific re 99.7 5.9E-18 2E-22 152.3 11.0 101 51-176 437-544 (590)
57 2va8_A SSO2462, SKI2-type heli 99.7 1.5E-17 5E-22 152.9 13.1 105 52-183 251-403 (715)
58 2oca_A DAR protein, ATP-depend 99.7 1.2E-17 4.2E-22 147.3 11.4 111 35-176 332-443 (510)
59 3rc3_A ATP-dependent RNA helic 99.7 1.6E-17 5.6E-22 152.6 12.2 96 54-176 321-430 (677)
60 4a4z_A Antiviral helicase SKI2 99.7 1.6E-17 5.5E-22 158.3 12.3 127 25-185 314-489 (997)
61 2v6i_A RNA helicase; membrane, 99.7 9E-18 3.1E-22 146.6 8.9 91 53-176 171-278 (431)
62 2zj8_A DNA helicase, putative 99.7 2.1E-17 7.1E-22 152.2 11.4 115 35-183 226-382 (720)
63 3o8b_A HCV NS3 protease/helica 99.7 6.8E-18 2.3E-22 154.6 8.1 92 52-180 395-507 (666)
64 2p6r_A Afuhel308 helicase; pro 99.7 2.3E-17 7.8E-22 151.5 11.7 114 35-183 231-383 (702)
65 1z3i_X Similar to RAD54-like; 99.7 7.5E-17 2.6E-21 147.3 14.4 117 33-176 398-514 (644)
66 1gm5_A RECG; helicase, replica 99.7 5.4E-18 1.9E-22 157.9 2.1 117 35-182 563-691 (780)
67 3mwy_W Chromo domain-containin 99.7 3.6E-16 1.2E-20 145.9 13.2 115 33-175 555-669 (800)
68 4f92_B U5 small nuclear ribonu 99.5 1.2E-13 4.1E-18 137.5 10.2 137 20-183 282-468 (1724)
69 4f92_B U5 small nuclear ribonu 99.5 3.1E-13 1.1E-17 134.6 12.1 105 51-183 1153-1303(1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.3 6.4E-12 2.2E-16 120.2 10.1 103 53-183 537-706 (1038)
71 2vl7_A XPD; helicase, unknown 98.5 4.5E-07 1.5E-11 81.1 8.7 88 37-160 370-463 (540)
72 3hgt_A HDA1 complex subunit 3; 97.7 0.00065 2.2E-08 57.2 12.5 104 33-172 108-217 (328)
73 2ipc_A Preprotein translocase 97.5 0.0016 5.4E-08 61.6 13.5 42 30-74 423-464 (997)
74 4a15_A XPD helicase, ATP-depen 97.1 0.00068 2.3E-08 61.6 6.4 76 53-160 448-527 (620)
75 3crv_A XPD/RAD3 related DNA he 95.7 0.042 1.5E-06 48.7 9.1 89 36-160 378-473 (551)
76 1gm5_A RECG; helicase, replica 95.6 0.058 2E-06 50.2 9.6 76 53-155 417-496 (780)
77 3oiy_A Reverse gyrase helicase 94.5 0.11 3.9E-06 43.6 7.8 81 51-155 62-145 (414)
78 4ddu_A Reverse gyrase; topoiso 92.1 0.37 1.3E-05 46.5 7.8 80 52-155 120-202 (1104)
79 3ber_A Probable ATP-dependent 91.0 1.9 6.4E-05 33.7 9.8 102 25-155 83-192 (249)
80 1oyw_A RECQ helicase, ATP-depe 90.9 0.6 2.1E-05 41.0 7.4 51 53-104 65-115 (523)
81 1t6n_A Probable ATP-dependent 90.9 4 0.00014 30.7 11.6 104 25-155 54-164 (220)
82 3gk5_A Uncharacterized rhodane 90.5 0.46 1.6E-05 32.6 5.1 37 51-88 53-89 (108)
83 2eyq_A TRCF, transcription-rep 90.4 0.52 1.8E-05 45.6 7.0 76 52-154 651-730 (1151)
84 2v1x_A ATP-dependent DNA helic 89.9 0.66 2.3E-05 41.6 6.9 62 53-136 84-145 (591)
85 2jtq_A Phage shock protein E; 89.7 1.2 4.1E-05 28.8 6.4 38 51-89 39-76 (85)
86 2l82_A Designed protein OR32; 88.9 1.7 5.8E-05 30.8 6.9 47 56-103 5-51 (162)
87 1vec_A ATP-dependent RNA helic 88.3 6.2 0.00021 29.1 10.8 102 25-154 43-151 (206)
88 3foj_A Uncharacterized protein 88.3 0.58 2E-05 31.4 4.2 37 51-88 54-90 (100)
89 1gmx_A GLPE protein; transfera 88.0 1 3.6E-05 30.5 5.4 39 51-89 56-94 (108)
90 3eme_A Rhodanese-like domain p 87.8 0.58 2E-05 31.5 3.9 37 51-88 54-90 (103)
91 2oxc_A Probable ATP-dependent 87.5 4.5 0.00015 30.8 9.4 100 26-154 65-171 (230)
92 2gxq_A Heat resistant RNA depe 87.3 2.7 9.3E-05 31.1 7.9 104 25-155 41-150 (207)
93 3g5j_A Putative ATP/GTP bindin 87.0 1.2 4.1E-05 31.0 5.4 35 54-89 90-125 (134)
94 3fe2_A Probable ATP-dependent 86.8 2.6 8.7E-05 32.5 7.7 100 27-154 71-181 (242)
95 3iuy_A Probable ATP-dependent 86.2 1.8 6.1E-05 33.0 6.4 77 52-155 93-173 (228)
96 1tq1_A AT5G66040, senescence-a 86.0 0.89 3.1E-05 32.1 4.3 39 51-89 80-118 (129)
97 3hix_A ALR3790 protein; rhodan 85.5 0.92 3.1E-05 30.8 4.0 38 51-88 50-87 (106)
98 3iwh_A Rhodanese-like domain p 85.4 0.93 3.2E-05 31.0 3.9 37 51-88 54-90 (103)
99 1xti_A Probable ATP-dependent 83.3 13 0.00046 30.0 10.9 103 25-154 48-157 (391)
100 2k0z_A Uncharacterized protein 82.4 2.2 7.5E-05 29.1 4.9 38 51-89 54-91 (110)
101 1wv9_A Rhodanese homolog TT165 82.3 1.7 5.7E-05 28.7 4.1 35 54-89 54-88 (94)
102 1qxn_A SUD, sulfide dehydrogen 82.2 1.3 4.5E-05 31.6 3.8 38 51-88 80-117 (137)
103 2fsx_A RV0390, COG0607: rhodan 82.1 1.6 5.3E-05 31.5 4.2 38 52-89 79-116 (148)
104 3tbk_A RIG-I helicase domain; 82.1 3.1 0.00011 35.6 6.8 40 53-93 52-95 (555)
105 3flh_A Uncharacterized protein 81.5 1.6 5.5E-05 30.4 4.0 37 51-88 69-107 (124)
106 1qde_A EIF4A, translation init 80.9 8.2 0.00028 28.9 8.2 101 25-154 54-160 (224)
107 3d1p_A Putative thiosulfate su 80.3 1.7 5.8E-05 30.8 3.8 39 51-89 89-127 (139)
108 2hhg_A Hypothetical protein RP 80.1 1.5 5E-05 31.0 3.4 37 52-88 85-121 (139)
109 3ilm_A ALR3790 protein; rhodan 79.8 1.7 6E-05 31.2 3.8 38 51-88 54-91 (141)
110 4a2p_A RIG-I, retinoic acid in 79.8 4.6 0.00016 34.6 7.1 40 53-93 55-98 (556)
111 3bor_A Human initiation factor 79.4 5.6 0.00019 30.5 6.9 101 27-154 72-178 (237)
112 3ly5_A ATP-dependent RNA helic 79.3 7.3 0.00025 30.5 7.6 76 52-154 125-206 (262)
113 3fmo_B ATP-dependent RNA helic 77.9 2.8 9.5E-05 33.9 4.8 100 25-155 134-241 (300)
114 3nhv_A BH2092 protein; alpha-b 77.5 2.5 8.6E-05 30.4 4.0 37 51-88 70-108 (144)
115 3dkp_A Probable ATP-dependent 77.3 3.4 0.00012 31.7 5.0 63 25-88 69-136 (245)
116 1wp9_A ATP-dependent RNA helic 77.1 11 0.00037 31.0 8.5 69 26-96 27-98 (494)
117 1vee_A Proline-rich protein fa 76.9 1.9 6.6E-05 30.5 3.2 38 52-89 73-110 (134)
118 2j0s_A ATP-dependent RNA helic 76.4 29 0.00099 28.3 10.9 101 26-154 78-184 (410)
119 2pl3_A Probable ATP-dependent 76.3 5.6 0.00019 30.2 6.0 75 52-154 96-176 (236)
120 2db3_A ATP-dependent RNA helic 75.1 11 0.00037 31.8 8.0 101 27-154 98-208 (434)
121 1s2m_A Putative ATP-dependent 74.8 32 0.0011 27.8 11.2 102 25-154 61-168 (400)
122 1wrb_A DJVLGB; RNA helicase, D 74.4 7.9 0.00027 29.8 6.5 75 53-154 100-179 (253)
123 1gku_B Reverse gyrase, TOP-RG; 74.3 5.4 0.00019 38.2 6.4 65 35-102 84-155 (1054)
124 4a2q_A RIG-I, retinoic acid in 73.9 14 0.00046 34.0 8.8 41 53-94 296-340 (797)
125 1fuu_A Yeast initiation factor 73.1 31 0.001 27.8 10.1 70 26-97 62-136 (394)
126 3h11_B Caspase-8; cell death, 72.9 19 0.00064 28.9 8.5 50 52-103 16-86 (271)
127 1urh_A 3-mercaptopyruvate sulf 72.5 6.9 0.00023 30.9 5.8 40 51-90 228-267 (280)
128 3i2v_A Adenylyltransferase and 71.3 2.7 9.3E-05 28.9 2.8 36 54-89 73-114 (127)
129 3dmn_A Putative DNA helicase; 70.4 9.9 0.00034 28.0 5.9 89 25-159 36-124 (174)
130 1q0u_A Bstdead; DEAD protein, 70.4 11 0.00037 28.2 6.3 66 25-91 44-117 (219)
131 2i4i_A ATP-dependent RNA helic 68.7 14 0.00049 30.2 7.2 74 54-154 102-180 (417)
132 1e0c_A Rhodanese, sulfurtransf 66.5 7.3 0.00025 30.6 4.7 38 51-88 221-258 (271)
133 3aay_A Putative thiosulfate su 66.2 14 0.00048 29.0 6.3 49 38-88 213-262 (277)
134 1urh_A 3-mercaptopyruvate sulf 66.1 8.4 0.00029 30.4 5.0 50 37-88 72-122 (280)
135 3h11_A CAsp8 and FADD-like apo 66.0 4.8 0.00017 32.5 3.5 50 52-103 42-91 (272)
136 3tg1_B Dual specificity protei 65.5 6.9 0.00024 28.3 4.1 35 53-88 93-136 (158)
137 1hv8_A Putative ATP-dependent 64.7 50 0.0017 26.0 10.6 69 25-94 47-118 (367)
138 3hzu_A Thiosulfate sulfurtrans 64.3 11 0.00038 30.6 5.6 49 38-88 98-147 (318)
139 3p45_A Caspase-6; protease, hu 64.3 43 0.0015 25.2 8.7 50 52-103 43-106 (179)
140 4f67_A UPF0176 protein LPG2838 63.2 6.1 0.00021 31.8 3.7 39 51-89 179-217 (265)
141 1e0c_A Rhodanese, sulfurtransf 62.6 13 0.00044 29.1 5.5 49 38-88 68-117 (271)
142 1uar_A Rhodanese; sulfurtransf 62.5 14 0.00048 29.1 5.7 38 51-88 231-269 (285)
143 2fsf_A Preprotein translocase 62.1 22 0.00076 33.4 7.6 42 53-95 115-160 (853)
144 3eiq_A Eukaryotic initiation f 62.1 12 0.0004 30.6 5.3 93 35-154 90-188 (414)
145 2eg4_A Probable thiosulfate su 62.1 7.6 0.00026 29.8 3.9 38 51-89 182-219 (230)
146 1rhs_A Sulfur-substituted rhod 60.5 12 0.00041 29.8 5.0 39 51-89 238-276 (296)
147 2ouc_A Dual specificity protei 60.2 5.8 0.0002 27.5 2.7 35 53-88 83-126 (142)
148 3od5_A Caspase-6; caspase doma 60.0 48 0.0016 26.5 8.5 50 52-103 20-83 (278)
149 3aay_A Putative thiosulfate su 59.7 17 0.00058 28.5 5.7 49 38-88 64-113 (277)
150 4a2w_A RIG-I, retinoic acid in 59.4 23 0.0008 33.2 7.4 40 53-93 296-339 (936)
151 1qtn_A Caspase-8; apoptosis, d 57.8 54 0.0018 24.1 8.9 39 63-103 54-92 (164)
152 1tf5_A Preprotein translocase 57.5 22 0.00074 33.4 6.7 43 53-96 124-170 (844)
153 2ykg_A Probable ATP-dependent 57.1 13 0.00043 33.2 5.0 38 54-92 62-103 (696)
154 2wlr_A Putative thiosulfate su 57.0 15 0.00051 31.0 5.2 51 37-89 189-239 (423)
155 1uar_A Rhodanese; sulfurtransf 57.0 13 0.00043 29.4 4.5 48 39-88 67-115 (285)
156 2dko_A Caspase-3; low barrier 56.6 21 0.00072 25.9 5.3 49 53-103 16-78 (146)
157 2h54_A Caspase-1; allosteric s 55.8 40 0.0014 25.2 6.9 48 53-102 43-101 (178)
158 3olh_A MST, 3-mercaptopyruvate 55.6 10 0.00035 30.5 3.8 51 37-89 240-290 (302)
159 3e4c_A Caspase-1; zymogen, inf 55.4 36 0.0012 27.7 7.1 47 54-102 61-118 (302)
160 2eg4_A Probable thiosulfate su 53.8 32 0.0011 26.2 6.2 45 38-87 50-95 (230)
161 2nn3_C Caspase-1; cysteine pro 53.6 71 0.0024 26.1 8.6 50 52-103 59-121 (310)
162 3sxu_A DNA polymerase III subu 53.4 31 0.0011 25.1 5.8 41 34-77 23-63 (150)
163 3b6e_A Interferon-induced heli 53.3 14 0.00049 27.1 4.1 66 25-91 51-123 (216)
164 2z0m_A 337AA long hypothetical 53.1 42 0.0014 26.2 7.1 65 24-94 33-100 (337)
165 3zyw_A Glutaredoxin-3; metal b 52.9 45 0.0015 22.5 6.3 42 54-96 16-63 (111)
166 3gr1_A Protein PRGH; type III 52.5 67 0.0023 25.2 7.9 48 53-103 26-74 (227)
167 3ipz_A Monothiol glutaredoxin- 52.2 49 0.0017 22.0 6.4 43 54-97 18-66 (109)
168 1nkt_A Preprotein translocase 51.8 30 0.001 32.7 6.7 43 53-96 152-198 (922)
169 3gr0_A Protein PRGH; type III 51.2 64 0.0022 24.7 7.5 49 52-103 25-74 (197)
170 1okg_A Possible 3-mercaptopyru 51.0 22 0.00076 29.6 5.3 37 51-88 93-131 (373)
171 1nw9_B Caspase 9, apoptosis-re 50.6 64 0.0022 25.6 7.8 50 52-103 20-83 (277)
172 3ntd_A FAD-dependent pyridine 49.9 14 0.00047 32.1 3.9 38 51-89 522-559 (565)
173 2b4a_A BH3024; flavodoxin-like 49.5 55 0.0019 21.7 11.5 115 26-178 18-134 (138)
174 1rhs_A Sulfur-substituted rhod 48.7 24 0.00081 28.1 4.9 49 38-88 79-130 (296)
175 3hzu_A Thiosulfate sulfurtrans 48.3 16 0.00053 29.7 3.8 39 50-88 256-295 (318)
176 4gl2_A Interferon-induced heli 48.1 6.7 0.00023 35.0 1.6 42 53-94 56-100 (699)
177 3sir_A Caspase; hydrolase; 2.6 47.7 39 0.0013 26.8 6.0 39 63-103 43-81 (259)
178 2fp3_A Caspase NC; apoptosis, 47.6 43 0.0015 27.4 6.4 50 52-103 60-121 (316)
179 1t3k_A Arath CDC25, dual-speci 47.3 27 0.00094 24.9 4.7 39 51-89 83-130 (152)
180 1pyo_A Caspase-2; apoptosis, c 46.8 45 0.0015 24.7 5.9 49 52-102 32-94 (167)
181 2ipc_A Preprotein translocase 46.4 38 0.0013 32.3 6.4 44 53-97 120-167 (997)
182 3sqw_A ATP-dependent RNA helic 46.1 1.4E+02 0.0049 25.7 10.0 103 26-154 64-180 (579)
183 1m72_A Caspase-1; caspase, cys 45.8 55 0.0019 26.1 6.6 49 53-103 32-93 (272)
184 2lnd_A De novo designed protei 44.8 65 0.0022 21.3 7.4 61 38-103 39-101 (112)
185 2oca_A DAR protein, ATP-depend 44.0 79 0.0027 26.7 7.8 62 30-93 136-200 (510)
186 1yt8_A Thiosulfate sulfurtrans 43.7 30 0.001 30.2 5.1 37 52-88 62-98 (539)
187 2fwr_A DNA repair protein RAD2 43.6 33 0.0011 28.8 5.3 58 25-89 111-169 (472)
188 2lci_A Protein OR36; structura 43.5 75 0.0026 21.6 9.9 49 50-103 48-96 (134)
189 2fz4_A DNA repair protein RAD2 43.2 46 0.0016 25.5 5.7 57 25-88 111-168 (237)
190 2j32_A Caspase-3; Pro-caspase3 42.8 42 0.0015 26.3 5.5 49 53-103 16-78 (250)
191 3utn_X Thiosulfate sulfurtrans 42.3 52 0.0018 27.0 6.1 51 39-89 261-311 (327)
192 3olh_A MST, 3-mercaptopyruvate 42.0 34 0.0012 27.4 4.9 50 37-88 93-145 (302)
193 2wlr_A Putative thiosulfate su 41.9 26 0.00089 29.5 4.3 38 51-88 356-393 (423)
194 1okg_A Possible 3-mercaptopyru 41.3 18 0.00062 30.2 3.2 38 53-90 246-283 (373)
195 3i5x_A ATP-dependent RNA helic 41.0 32 0.0011 29.7 4.8 76 53-154 146-231 (563)
196 3eul_A Possible nitrate/nitrit 40.3 83 0.0028 21.2 7.2 112 24-172 16-132 (152)
197 4ehd_A Caspase-3; caspase, apo 40.3 48 0.0016 26.6 5.5 49 53-103 44-106 (277)
198 3pey_A ATP-dependent RNA helic 40.0 1.4E+02 0.0047 23.6 8.8 63 25-88 47-113 (395)
199 2wem_A Glutaredoxin-related pr 39.6 89 0.003 21.3 7.7 51 37-96 11-68 (118)
200 2yan_A Glutaredoxin-3; oxidore 39.2 78 0.0027 20.6 7.0 46 54-100 17-68 (105)
201 3tp9_A Beta-lactamase and rhod 39.2 21 0.00072 30.5 3.3 39 51-89 425-463 (474)
202 1yt8_A Thiosulfate sulfurtrans 38.6 30 0.001 30.2 4.3 37 52-89 321-358 (539)
203 2j6p_A SB(V)-AS(V) reductase; 38.2 62 0.0021 22.9 5.4 36 54-89 68-111 (152)
204 2ql9_A Caspase-7; cysteine pro 37.9 66 0.0023 24.0 5.6 49 53-103 44-106 (173)
205 3ics_A Coenzyme A-disulfide re 37.8 29 0.00098 30.3 4.0 38 51-89 539-576 (588)
206 1wik_A Thioredoxin-like protei 36.1 92 0.0031 20.5 6.9 45 54-99 15-65 (109)
207 4e7p_A Response regulator; DNA 35.1 1E+02 0.0035 20.7 7.5 116 25-173 22-138 (150)
208 1u6t_A SH3 domain-binding glut 34.7 43 0.0015 23.5 3.8 40 60-100 13-52 (121)
209 2wci_A Glutaredoxin-4; redox-a 34.6 1.2E+02 0.004 21.3 9.1 54 36-98 25-84 (135)
210 3gx8_A Monothiol glutaredoxin- 32.9 1.2E+02 0.004 20.7 7.3 42 54-96 16-66 (121)
211 1c25_A CDC25A; hydrolase, cell 32.2 31 0.0011 24.5 2.9 38 52-89 86-136 (161)
212 3fht_A ATP-dependent RNA helic 31.5 1.3E+02 0.0046 24.0 7.0 63 25-88 67-134 (412)
213 2zj8_A DNA helicase, putative 31.3 81 0.0028 28.2 6.0 64 25-92 42-109 (720)
214 3s5u_A Putative uncharacterize 29.9 1.6E+02 0.0056 22.6 6.8 47 35-87 148-199 (220)
215 2p6r_A Afuhel308 helicase; pro 29.5 82 0.0028 28.1 5.7 62 25-91 43-108 (702)
216 4dad_A Putative pilus assembly 29.5 1.3E+02 0.0043 20.0 8.9 120 20-172 17-138 (146)
217 3qhq_A CSN2, SAG0897 family cr 28.4 1.6E+02 0.0053 22.9 6.5 47 35-87 148-199 (229)
218 1qb0_A Protein (M-phase induce 27.2 57 0.002 24.6 3.7 37 52-88 108-157 (211)
219 3hjh_A Transcription-repair-co 27.2 3E+02 0.01 23.7 10.9 73 23-103 16-101 (483)
220 4b3f_X DNA-binding protein smu 26.7 1.3E+02 0.0043 26.8 6.4 51 31-85 214-264 (646)
221 1qle_D Cytochrome AA3, ccytoch 26.4 34 0.0011 19.7 1.7 20 84-103 4-23 (43)
222 2l82_A Designed protein OR32; 26.3 1.7E+02 0.0057 20.4 10.1 62 35-103 64-128 (162)
223 1f1j_A Caspase-7 protease; cas 26.2 98 0.0033 25.1 5.1 49 53-103 69-131 (305)
224 3fmp_B ATP-dependent RNA helic 26.1 1.4E+02 0.0049 24.9 6.4 63 25-88 134-201 (479)
225 3mwy_W Chromo domain-containin 25.9 1.9E+02 0.0064 26.4 7.5 40 51-91 284-324 (800)
226 4fn4_A Short chain dehydrogena 25.1 2.4E+02 0.0083 21.9 8.7 40 53-93 31-70 (254)
227 3hjh_A Transcription-repair-co 25.1 67 0.0023 27.8 4.2 76 36-157 371-446 (483)
228 2vsw_A Dual specificity protei 24.1 19 0.00067 25.4 0.4 38 51-88 76-121 (153)
229 2gk6_A Regulator of nonsense t 23.9 2.7E+02 0.0092 24.5 8.0 57 27-86 200-256 (624)
230 3op3_A M-phase inducer phospha 23.5 45 0.0015 25.6 2.5 33 56-88 127-170 (216)
231 1rif_A DAR protein, DNA helica 23.4 1.6E+02 0.0054 22.7 5.8 35 54-88 158-195 (282)
232 3hzh_A Chemotaxis response reg 23.1 1.8E+02 0.0062 19.7 9.8 113 22-172 35-154 (157)
233 2wul_A Glutaredoxin related pr 22.8 1.9E+02 0.0065 19.9 7.7 56 37-102 11-73 (118)
234 2qv0_A Protein MRKE; structura 21.8 1.8E+02 0.006 19.1 6.1 113 26-172 12-124 (143)
235 2a2k_A M-phase inducer phospha 21.7 65 0.0022 23.2 3.0 37 52-88 88-137 (175)
236 1c4o_A DNA nucleotide excision 21.4 4.3E+02 0.015 23.5 11.4 72 25-103 32-129 (664)
237 3f4a_A Uncharacterized protein 20.9 29 0.00099 25.4 0.8 36 54-89 105-147 (169)
No 1
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=6.9e-30 Score=195.71 Aligned_cols=134 Identities=20% Similarity=0.371 Sum_probs=121.0
Q ss_pred CCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHH
Q 029806 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTL 95 (187)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~ 95 (187)
...+.+|.|+|+.++..+ |+..|.++++. .+..++||||+++..++.+++.|...| +.+..+||+|+..+|..
T Consensus 4 ~~~~~~i~~~~~~~~~~~-K~~~L~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVREEN-KFSLLKDVLMT-----ENPDSCIIFCRTKEHVNQLTDELDDLG-YPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp --CCCCEEEEEEECCGGG-HHHHHHHHHHH-----HCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHH
T ss_pred ccCcccceEEEEECChHH-HHHHHHHHHHh-----cCCCcEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHH
Confidence 355678999999999887 99999999988 345799999999999999999999988 69999999999999999
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC
Q 029806 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 175 (187)
Q Consensus 96 ~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~ 175 (187)
++++|+.|. .++||+|++ +++|+|+|++++||+||+|+++.+|+||+||++|.
T Consensus 77 ~~~~f~~g~-----------------------~~vlv~T~~----~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~ 129 (163)
T 2hjv_A 77 VMNEFKRGE-----------------------YRYLVATDV----AARGIDIENISLVINYDLPLEKESYVHRTGRTGRA 129 (163)
T ss_dssp HHHHHHTTS-----------------------CSEEEECGG----GTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCT
T ss_pred HHHHHHcCC-----------------------CeEEEECCh----hhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcC
Confidence 999999984 999999999 99999999999999999999999999999999776
Q ss_pred C--CeEEEEE
Q 029806 176 G--TSFSDII 183 (187)
Q Consensus 176 ~--g~~i~~v 183 (187)
+ |.+++|+
T Consensus 130 g~~g~~~~~~ 139 (163)
T 2hjv_A 130 GNKGKAISFV 139 (163)
T ss_dssp TCCEEEEEEE
T ss_pred CCCceEEEEe
Confidence 5 5555554
No 2
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=6.5e-30 Score=197.89 Aligned_cols=133 Identities=16% Similarity=0.282 Sum_probs=120.5
Q ss_pred CCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHH
Q 029806 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 18 ~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
.+.+|.|+|+.++..+ |+..|.++++. .+..++||||+++..++.+++.|...| +.+..+||+|+..+|..++
T Consensus 2 ~~~~i~q~~~~~~~~~-K~~~L~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~~~ 74 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNE-KNRKLFDLLDV-----LEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRY 74 (172)
T ss_dssp ---CCEEEEEECCGGG-HHHHHHHHHHH-----SCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHH
T ss_pred ccCCeEEEEEECChHH-HHHHHHHHHHh-----CCCCcEEEEECCHHHHHHHHHHHHhcC-CCEEEEECCCCHHHHHHHH
Confidence 4678999999999887 99999999988 356899999999999999999999988 6999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC--
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-- 175 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~-- 175 (187)
++|++|. .++||||++ +++|+|+|++++||+||+|++++.|+||+||++|.
T Consensus 75 ~~f~~g~-----------------------~~vLvaT~~----~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~ 127 (172)
T 1t5i_A 75 QQFKDFQ-----------------------RRILVATNL----FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGT 127 (172)
T ss_dssp HHHHTTS-----------------------CSEEEESSC----CSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGC
T ss_pred HHHHCCC-----------------------CcEEEECCc----hhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCC
Confidence 9999984 999999999 99999999999999999999999999999999665
Q ss_pred CCeEEEEEE
Q 029806 176 GTSFSDIIL 184 (187)
Q Consensus 176 ~g~~i~~v~ 184 (187)
.|.++.|+.
T Consensus 128 ~g~~~~~~~ 136 (172)
T 1t5i_A 128 KGLAITFVS 136 (172)
T ss_dssp CCEEEEEEC
T ss_pred CcEEEEEEc
Confidence 577777664
No 3
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=196.35 Aligned_cols=133 Identities=20% Similarity=0.338 Sum_probs=118.7
Q ss_pred CCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHH
Q 029806 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 18 ~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
.+.+|.|+|+.++..+.|+..|.++++. .+.+++||||+++..++.++..|...| +.+..+||+|+..+|..++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~ 77 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGS-----ITIGQAIIFCQTRRNAKWLTVEMIQDG-HQVSLLSGELTVEQRASII 77 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTT-----SCCSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECSSCCHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHh-----CCCCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHH
Confidence 5679999999999877799999999987 356899999999999999999999988 6999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCC------CChhHHHHhhhh
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------TKKETYIRRMTT 171 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P------~~~~~y~~R~GR 171 (187)
++|++|. .++||||++ +++|+|+|++++||+||+| .+.++|+||+||
T Consensus 78 ~~f~~g~-----------------------~~vLvaT~~----~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR 130 (175)
T 2rb4_A 78 QRFRDGK-----------------------EKVLITTNV----CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGR 130 (175)
T ss_dssp HHHHTTS-----------------------CSEEEECCS----CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCB
T ss_pred HHHHcCC-----------------------CeEEEEecc----hhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcc
Confidence 9999984 999999999 9999999999999999999 999999999999
Q ss_pred ccCCC--CeEEEEE
Q 029806 172 CLAAG--TSFSDII 183 (187)
Q Consensus 172 ~~r~~--g~~i~~v 183 (187)
+||.+ |.++.|+
T Consensus 131 ~gR~g~~g~~~~~~ 144 (175)
T 2rb4_A 131 TGRFGKKGLAFNMI 144 (175)
T ss_dssp C----CCEEEEEEE
T ss_pred cccCCCCceEEEEE
Confidence 97764 5555554
No 4
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=3.7e-29 Score=196.01 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=107.8
Q ss_pred CCCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHH
Q 029806 15 SPSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT 94 (187)
Q Consensus 15 ~~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~ 94 (187)
....+.+|.|+|+.++..+ |+..|.++++. ..+..++||||+++..++.++..|...| +.+..+||+|+..+|.
T Consensus 13 ~~~~~~~i~q~~~~v~~~~-K~~~L~~ll~~----~~~~~k~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~r~ 86 (185)
T 2jgn_A 13 QGSTSENITQKVVWVEESD-KRSFLLDLLNA----TGKDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDRE 86 (185)
T ss_dssp ---CCTTEEEEEEECCGGG-HHHHHHHHHHH----C-CCSCEEEEESCHHHHHHHHHHHHHTT-CCEEEEC--------C
T ss_pred cCCCCCCceEEEEEeCcHH-HHHHHHHHHHh----cCCCCeEEEEECCHHHHHHHHHHHHHcC-CceEEEeCCCCHHHHH
Confidence 3456789999999999887 99999999988 2356899999999999999999999988 6999999999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccC
Q 029806 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 174 (187)
Q Consensus 95 ~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r 174 (187)
.++++|+.|. .++||||++ +++|+|+|++++||+||+|+++++|+||+||++|
T Consensus 87 ~~~~~f~~g~-----------------------~~vLvaT~~----~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R 139 (185)
T 2jgn_A 87 EALHQFRSGK-----------------------SPILVATAV----AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 139 (185)
T ss_dssp HHHHHHHHTS-----------------------SSEEEEEC----------CCCSBSEEEESSCCSSHHHHHHHHTTBCC
T ss_pred HHHHHHHcCC-----------------------CeEEEEcCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHccccCC
Confidence 9999999984 999999999 9999999999999999999999999999999977
Q ss_pred CC--CeEEEEE
Q 029806 175 AG--TSFSDII 183 (187)
Q Consensus 175 ~~--g~~i~~v 183 (187)
.+ |.++.|+
T Consensus 140 ~g~~g~~~~~~ 150 (185)
T 2jgn_A 140 VGNLGLATSFF 150 (185)
T ss_dssp TTSCEEEEEEE
T ss_pred CCCCcEEEEEE
Confidence 75 5555554
No 5
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=7.2e-29 Score=190.23 Aligned_cols=132 Identities=27% Similarity=0.484 Sum_probs=118.3
Q ss_pred CCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHH
Q 029806 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 20 ~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
.+|.|+|+.++.++.|++.|.++++. .+..++||||+++..++.++..|...+ +.+..+||+|+..+|..++++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~ 75 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDS-----ISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIMKE 75 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHH-----TTCSCEEEEESSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHh-----CCCCCEEEEECCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHH
Confidence 57999999999877799999999998 356899999999999999999999988 699999999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC--CC
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GT 177 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~--~g 177 (187)
|+.|. .++||||++ +++|+|+|++++||+||+|.+..+|+||+||++|. .|
T Consensus 76 f~~g~-----------------------~~vlv~T~~----~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g 128 (165)
T 1fuk_A 76 FRSGS-----------------------SRILISTDL----LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG 128 (165)
T ss_dssp HHTTS-----------------------CSEEEEEGG----GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----C
T ss_pred HHcCC-----------------------CEEEEEcCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc
Confidence 99984 899999999 99999999999999999999999999999999776 47
Q ss_pred eEEEEEE
Q 029806 178 SFSDIIL 184 (187)
Q Consensus 178 ~~i~~v~ 184 (187)
.++.++.
T Consensus 129 ~~~~~~~ 135 (165)
T 1fuk_A 129 VAINFVT 135 (165)
T ss_dssp EEEEEEE
T ss_pred eEEEEEc
Confidence 7776654
No 6
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.96 E-value=4.3e-28 Score=193.55 Aligned_cols=132 Identities=22% Similarity=0.297 Sum_probs=119.5
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
+-.+.+.++.++..+ |++.|.++++. .+.+++||||+++..++.+++.|...| +.+..+||+|+.++|..+++
T Consensus 3 ~i~~~~~~~~~~~~~-k~~~l~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~r~~~~~ 75 (212)
T 3eaq_A 3 PVTYEEEAVPAPVRG-RLEVLSDLLYV-----ASPDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDLSQGERERVLG 75 (212)
T ss_dssp -CCBCCEEEECCTTS-HHHHHHHHHHH-----HCCSCEEEECSSHHHHHHHHHHHHHHT-CCEEEECSSSCHHHHHHHHH
T ss_pred CcceeeeEEeCCHHH-HHHHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHH
Confidence 445678888888888 99999999987 346899999999999999999999988 69999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC--
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-- 176 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~-- 176 (187)
+|++|. .++||||++ +++|+|+|++++|||||+|.+.++|+||+||+||.+
T Consensus 76 ~f~~g~-----------------------~~vlvaT~~----~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~ 128 (212)
T 3eaq_A 76 AFRQGE-----------------------VRVLVATDV----AARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG 128 (212)
T ss_dssp HHHSSS-----------------------CCEEEECTT----TTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--
T ss_pred HHHCCC-----------------------CeEEEecCh----hhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCC
Confidence 999984 999999999 999999999999999999999999999999998875
Q ss_pred CeEEEEEE
Q 029806 177 TSFSDIIL 184 (187)
Q Consensus 177 g~~i~~v~ 184 (187)
|.++.|++
T Consensus 129 g~~~~l~~ 136 (212)
T 3eaq_A 129 GRVVLLYG 136 (212)
T ss_dssp BEEEEEEC
T ss_pred CeEEEEEc
Confidence 66666553
No 7
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=192.83 Aligned_cols=133 Identities=22% Similarity=0.291 Sum_probs=118.9
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
....+|.|+|..++..+ |+..|.++++. . ..++||||+++..++.+++.|...| +.+..+||+|++++|..+
T Consensus 25 ~~~~~i~q~~~~~~~~~-K~~~L~~~l~~-----~-~~~~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~ 96 (191)
T 2p6n_A 25 AASLDVIQEVEYVKEEA-KMVYLLECLQK-----T-PPPVLIFAEKKADVDAIHEYLLLKG-VEAVAIHGGKDQEERTKA 96 (191)
T ss_dssp ---CCSEEEEEECCGGG-HHHHHHHHHTT-----S-CSCEEEECSCHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHH
T ss_pred CCCcCceEEEEEcChHH-HHHHHHHHHHh-----C-CCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHH
Confidence 45678999999999887 99999998876 2 3589999999999999999999888 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC-
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA- 175 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~- 175 (187)
+++|+.|+ .++||+|++ +++|+|+|++++||+||+|.+++.|+||+||++|.
T Consensus 97 l~~F~~g~-----------------------~~vLvaT~~----~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g 149 (191)
T 2p6n_A 97 IEAFREGK-----------------------KDVLVATDV----ASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSG 149 (191)
T ss_dssp HHHHHHTS-----------------------CSEEEECHH----HHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC--
T ss_pred HHHHhcCC-----------------------CEEEEEcCc----hhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCC
Confidence 99999984 999999999 99999999999999999999999999999999776
Q ss_pred -CCeEEEEEE
Q 029806 176 -GTSFSDIIL 184 (187)
Q Consensus 176 -~g~~i~~v~ 184 (187)
.|.+++|++
T Consensus 150 ~~g~~i~l~~ 159 (191)
T 2p6n_A 150 NTGIATTFIN 159 (191)
T ss_dssp -CCEEEEEEC
T ss_pred CCcEEEEEEc
Confidence 477777764
No 8
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=2.3e-27 Score=199.19 Aligned_cols=130 Identities=20% Similarity=0.305 Sum_probs=118.2
Q ss_pred CCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHH
Q 029806 21 QPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 21 ~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
.+.|+|+.++..+ |++.|.++++. ...+++||||+++..++.+++.|...| +.+..+||+|++++|..+++.|
T Consensus 2 ~v~~~~i~~~~~~-K~~~L~~ll~~-----~~~~~~LVF~~t~~~~~~l~~~L~~~g-~~~~~lhg~l~~~~r~~~~~~f 74 (300)
T 3i32_A 2 TYEEEAVPAPVRG-RLEVLSDLLYV-----ASPDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDMSQGERERVMGAF 74 (300)
T ss_dssp CSEEEEEECCSSS-HHHHHHHHHHH-----HCCSSEEEECSSHHHHHHHHHHHHTTT-CCEEEECSCCCTHHHHHHHHHH
T ss_pred ceEEEEEECCHHH-HHHHHHHHHHh-----cCCCCEEEEECCHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHh
Confidence 4789999999988 99999999987 336899999999999999999999988 6999999999999999999999
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC--CCe
Q 029806 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTS 178 (187)
Q Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~--~g~ 178 (187)
+.|. .++||||++ +++|+|+|++++|||||+|.+.++|+||+||+||. .|.
T Consensus 75 ~~g~-----------------------~~vLVaT~v----a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~ 127 (300)
T 3i32_A 75 RQGE-----------------------VRVLVATDV----AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGR 127 (300)
T ss_dssp HHTS-----------------------CCEEEECST----TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CE
T ss_pred hcCC-----------------------ceEEEEech----hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCce
Confidence 9984 999999999 99999999999999999999999999999999876 477
Q ss_pred EEEEEE
Q 029806 179 FSDIIL 184 (187)
Q Consensus 179 ~i~~v~ 184 (187)
++.|++
T Consensus 128 ~i~l~~ 133 (300)
T 3i32_A 128 VVLLYG 133 (300)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 777654
No 9
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.90 E-value=3.6e-29 Score=192.91 Aligned_cols=131 Identities=19% Similarity=0.354 Sum_probs=118.4
Q ss_pred CCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHH
Q 029806 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 20 ~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
.+|.|+|+.++..+.|+..|.++++. .+..++||||+++..++.+++.|...+ +.+..+||+|+..+|..++++
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~-----~~~~~~iVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~r~~~~~~ 75 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQ-----PEATRSIVFVRKRERVHELANWLREAG-INNCYLEGEMVQGKRNEAIKR 75 (170)
Confidence 57899999999834499999999987 345899999999999999999999988 699999999999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC--C
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--T 177 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~--g 177 (187)
|++|. .++||||++ +++|+|+|++++||+||+|+++.+|+||+||++|.+ |
T Consensus 76 f~~g~-----------------------~~vLvaT~~----~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g 128 (170)
T 2yjt_D 76 LTEGR-----------------------VNVLVATDV----AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKG 128 (170)
Confidence 99984 999999999 999999999999999999999999999999997764 5
Q ss_pred eEEEEE
Q 029806 178 SFSDII 183 (187)
Q Consensus 178 ~~i~~v 183 (187)
.++.++
T Consensus 129 ~~~~~~ 134 (170)
T 2yjt_D 129 TAISLV 134 (170)
Confidence 555554
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.94 E-value=1.6e-25 Score=195.38 Aligned_cols=133 Identities=21% Similarity=0.348 Sum_probs=119.0
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
....++.+.+..+.... |...|.+++.. .. .++||||++++.++++++.|.+.| +.+..+||+|++++|..+
T Consensus 271 ~~~~~i~~~~~~~~~~~-k~~~l~~~l~~-----~~-~~~lVF~~t~~~a~~l~~~L~~~~-~~~~~lhg~~~~~~R~~~ 342 (434)
T 2db3_A 271 GACSDVKQTIYEVNKYA-KRSKLIEILSE-----QA-DGTIVFVETKRGADFLASFLSEKE-FPTTSIHGDRLQSQREQA 342 (434)
T ss_dssp CCCTTEEEEEEECCGGG-HHHHHHHHHHH-----CC-TTEEEECSSHHHHHHHHHHHHHTT-CCEEEESTTSCHHHHHHH
T ss_pred ccccccceEEEEeCcHH-HHHHHHHHHHh-----CC-CCEEEEEeCcHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHH
Confidence 34567888998888877 99999999987 22 359999999999999999999988 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
+++|++|. .++||||++ ++||+|+|+|++|||||+|.+.++|+||+||+||.+
T Consensus 343 l~~F~~g~-----------------------~~vLvaT~v----~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g 395 (434)
T 2db3_A 343 LRDFKNGS-----------------------MKVLIATSV----ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVG 395 (434)
T ss_dssp HHHHHTSS-----------------------CSEEEECGG----GTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTT
T ss_pred HHHHHcCC-----------------------CcEEEEchh----hhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCC
Confidence 99999984 999999999 999999999999999999999999999999997764
Q ss_pred --CeEEEEEE
Q 029806 177 --TSFSDIIL 184 (187)
Q Consensus 177 --g~~i~~v~ 184 (187)
|.+++|+.
T Consensus 396 ~~G~a~~~~~ 405 (434)
T 2db3_A 396 NNGRATSFFD 405 (434)
T ss_dssp CCEEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 66666653
No 11
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.92 E-value=8.1e-25 Score=187.41 Aligned_cols=134 Identities=21% Similarity=0.301 Sum_probs=118.5
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
....++.+.+..++..+ |...|.++++. .....++||||++++.++.+++.|.+.+ +.+..+||+|+.++|..+
T Consensus 245 ~~~~~i~~~~~~~~~~~-~~~~l~~~l~~----~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~ 318 (417)
T 2i4i_A 245 STSENITQKVVWVEESD-KRSFLLDLLNA----TGKDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDREEA 318 (417)
T ss_dssp -CCSSEEEEEEECCGGG-HHHHHHHHHHT----CCTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHH
T ss_pred CCccCceEEEEEeccHh-HHHHHHHHHHh----cCCCCeEEEEECCHHHHHHHHHHHHHCC-CCeeEecCCCCHHHHHHH
Confidence 34567888888888877 99999999987 3456899999999999999999999988 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
+++|++|+ .++||||++ +++|+|+|++++||+||+|.+..+|+||+||+||.+
T Consensus 319 ~~~f~~g~-----------------------~~vlvaT~~----~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 371 (417)
T 2i4i_A 319 LHQFRSGK-----------------------SPILVATAV----AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 371 (417)
T ss_dssp HHHHHHTS-----------------------SCEEEECHH----HHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--
T ss_pred HHHHHcCC-----------------------CCEEEECCh----hhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC
Confidence 99999984 899999999 999999999999999999999999999999998775
Q ss_pred --CeEEEEE
Q 029806 177 --TSFSDII 183 (187)
Q Consensus 177 --g~~i~~v 183 (187)
|.++.|+
T Consensus 372 ~~g~~~~~~ 380 (417)
T 2i4i_A 372 NLGLATSFF 380 (417)
T ss_dssp CCEEEEEEE
T ss_pred CCceEEEEE
Confidence 5555544
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.92 E-value=1.1e-24 Score=186.54 Aligned_cols=135 Identities=27% Similarity=0.508 Sum_probs=121.0
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
....++.+++..+...+.|...|.++++.. ...++||||++++.++.+++.|...+ +.+..+||+|+.++|..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-----~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~ 318 (410)
T 2j0s_A 245 LTLEGIKQFFVAVEREEWKFDTLCDLYDTL-----TITQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMPQKERESI 318 (410)
T ss_dssp CSCTTEEEEEEEESSTTHHHHHHHHHHHHH-----TSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHH
T ss_pred ccCCCceEEEEEeCcHHhHHHHHHHHHHhc-----CCCcEEEEEcCHHHHHHHHHHHHhCC-CceEEeeCCCCHHHHHHH
Confidence 345678899999988877999999999883 34799999999999999999999988 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
+++|++|+ .++||||++ +++|+|+|++++||+||+|.+...|+||+||+||.+
T Consensus 319 ~~~f~~g~-----------------------~~vlv~T~~----~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 371 (410)
T 2j0s_A 319 MKEFRSGA-----------------------SRVLISTDV----WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 371 (410)
T ss_dssp HHHHHHTS-----------------------SCEEEECGG----GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGG
T ss_pred HHHHHCCC-----------------------CCEEEECCh----hhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCC
Confidence 99999984 899999999 999999999999999999999999999999997764
Q ss_pred --CeEEEEEE
Q 029806 177 --TSFSDIIL 184 (187)
Q Consensus 177 --g~~i~~v~ 184 (187)
|.++.|+.
T Consensus 372 ~~g~~~~~~~ 381 (410)
T 2j0s_A 372 RKGVAINFVK 381 (410)
T ss_dssp CCEEEEEEEE
T ss_pred CceEEEEEec
Confidence 66665553
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.91 E-value=4e-24 Score=182.33 Aligned_cols=134 Identities=19% Similarity=0.362 Sum_probs=119.3
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
.....+.+.+..+...+.|+..|.+++.. ....++||||++++.++.+++.|.+.+ +.+..+||+|+.++|..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~ 308 (412)
T 3fht_A 235 ETLDTIKQYYVLCSSRDEKFQALCNLYGA-----ITIAQAMIFCHTRKTASWLAAELSKEG-HQVALLSGEMMVEQRAAV 308 (412)
T ss_dssp SSCTTEEEEEEECSSHHHHHHHHHHHHHH-----HSSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHH
T ss_pred ccccCceEEEEEcCChHHHHHHHHHHHhh-----cCCCCEEEEeCCHHHHHHHHHHHHhCC-CeEEEecCCCCHHHHHHH
Confidence 44677889999998877799999999987 335799999999999999999999988 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCC------CChhHHHHhhh
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------TKKETYIRRMT 170 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P------~~~~~y~~R~G 170 (187)
+++|++|+ .++||||++ +++|+|+|++++||+||+| .+..+|+||+|
T Consensus 309 ~~~f~~g~-----------------------~~vlv~T~~----~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~G 361 (412)
T 3fht_A 309 IERFREGK-----------------------EKVLVTTNV----CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIG 361 (412)
T ss_dssp HHHHHTTS-----------------------CSEEEECGG----GTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHT
T ss_pred HHHHHCCC-----------------------CcEEEEcCc----cccCCCccCCCEEEEECCCCCCCCCcchheeecccC
Confidence 99999984 899999999 9999999999999999999 46789999999
Q ss_pred hccCCC--CeEEEEE
Q 029806 171 TCLAAG--TSFSDII 183 (187)
Q Consensus 171 R~~r~~--g~~i~~v 183 (187)
|+||.+ |.++.++
T Consensus 362 R~gR~g~~g~~~~~~ 376 (412)
T 3fht_A 362 RTGRFGKRGLAVNMV 376 (412)
T ss_dssp TSSCTTCCEEEEEEE
T ss_pred cccCCCCCceEEEEE
Confidence 998865 4555544
No 14
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.91 E-value=9.8e-24 Score=179.00 Aligned_cols=134 Identities=16% Similarity=0.294 Sum_probs=120.5
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
....++.+++..+...+ |...|.++++. ...+++||||++++.++.+++.|...| +.+..+||+|+.++|..+
T Consensus 220 ~~~~~~~~~~~~~~~~~-~~~~l~~~l~~-----~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~ 292 (391)
T 1xti_A 220 LTLHGLQQYYVKLKDNE-KNRKLFDLLDV-----LEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSR 292 (391)
T ss_dssp CCCTTCEEEEEECCGGG-HHHHHHHHHHH-----SCCSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHH
T ss_pred cCcccceEEEEEcCchh-HHHHHHHHHHh-----cCCCcEEEEeCcHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHH
Confidence 34567888888888777 99999999988 356899999999999999999999988 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
+++|++++ .++||||++ +++|+|+|++++||+||+|.+...|+||+||++|.+
T Consensus 293 ~~~f~~~~-----------------------~~vlv~T~~----~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 345 (391)
T 1xti_A 293 YQQFKDFQ-----------------------RRILVATNL----FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 345 (391)
T ss_dssp HHHHHTTC-----------------------CSEEEESCC----CSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSC
T ss_pred HHHHhcCC-----------------------CcEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCC
Confidence 99999984 899999999 999999999999999999999999999999997764
Q ss_pred --CeEEEEEE
Q 029806 177 --TSFSDIIL 184 (187)
Q Consensus 177 --g~~i~~v~ 184 (187)
|.++.++.
T Consensus 346 ~~g~~~~~~~ 355 (391)
T 1xti_A 346 TKGLAITFVS 355 (391)
T ss_dssp CCCEEEEEEC
T ss_pred CceEEEEEEc
Confidence 66666653
No 15
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.91 E-value=1e-23 Score=179.86 Aligned_cols=133 Identities=23% Similarity=0.405 Sum_probs=118.8
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
....++.+++..+.... |+..+.++++. ...+++||||++++.++.+++.|...+ +.+..+||+|+.++|..+
T Consensus 228 ~~~~~~~~~~~~~~~~~-k~~~l~~~~~~-----~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~ 300 (400)
T 1s2m_A 228 LTLKGITQYYAFVEERQ-KLHCLNTLFSK-----LQINQAIIFCNSTNRVELLAKKITDLG-YSCYYSHARMKQQERNKV 300 (400)
T ss_dssp CBCTTEEEEEEECCGGG-HHHHHHHHHHH-----SCCSEEEEECSSHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHH
T ss_pred cccCCceeEEEEechhh-HHHHHHHHHhh-----cCCCcEEEEEecHHHHHHHHHHHHhcC-CCeEEecCCCCHHHHHHH
Confidence 34567888888887776 99999999987 456799999999999999999999988 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
++.|++++ .++||||++ +++|+|+|++++||+||+|.+..+|+||+||++|.+
T Consensus 301 ~~~f~~g~-----------------------~~vLv~T~~----~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g 353 (400)
T 1s2m_A 301 FHEFRQGK-----------------------VRTLVCSDL----LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFG 353 (400)
T ss_dssp HHHHHTTS-----------------------SSEEEESSC----SSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTT
T ss_pred HHHHhcCC-----------------------CcEEEEcCc----cccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCC
Confidence 99999984 999999999 999999999999999999999999999999998876
Q ss_pred --CeEEEEE
Q 029806 177 --TSFSDII 183 (187)
Q Consensus 177 --g~~i~~v 183 (187)
|.++.++
T Consensus 354 ~~g~~~~l~ 362 (400)
T 1s2m_A 354 HLGLAINLI 362 (400)
T ss_dssp CCEEEEEEE
T ss_pred CCceEEEEe
Confidence 4555443
No 16
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.91 E-value=7.6e-24 Score=179.15 Aligned_cols=134 Identities=23% Similarity=0.371 Sum_probs=118.6
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
.....+.+.+..+.....|...+.++++. .+.+++||||++++.++.+++.|...+ +.+..+||+|+.++|..+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~ 285 (395)
T 3pey_A 212 VNVDAIKQLYMDCKNEADKFDVLTELYGL-----MTIGSSIIFVATKKTANVLYGKLKSEG-HEVSILHGDLQTQERDRL 285 (395)
T ss_dssp CSCTTEEEEEEECSSHHHHHHHHHHHHTT-----TTSSEEEEECSCHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHH
T ss_pred cccccccEEEEEcCchHHHHHHHHHHHHh-----ccCCCEEEEeCCHHHHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHH
Confidence 34567888888888777788888888876 456899999999999999999999988 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCC------ChhHHHHhhh
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMT 170 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~------~~~~y~~R~G 170 (187)
+++|++|+ .++||||++ +++|+|+|++++||+||+|. +..+|+||+|
T Consensus 286 ~~~f~~g~-----------------------~~vlv~T~~----~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~G 338 (395)
T 3pey_A 286 IDDFREGR-----------------------SKVLITTNV----LARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIG 338 (395)
T ss_dssp HHHHHTTS-----------------------CCEEEECGG----GSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHT
T ss_pred HHHHHCCC-----------------------CCEEEECCh----hhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhcc
Confidence 99999984 899999999 99999999999999999999 9999999999
Q ss_pred hccCCCCeEEEEE
Q 029806 171 TCLAAGTSFSDII 183 (187)
Q Consensus 171 R~~r~~g~~i~~v 183 (187)
|++|.+..+.+++
T Consensus 339 R~gR~g~~g~~~~ 351 (395)
T 3pey_A 339 RTGRFGRKGVAIS 351 (395)
T ss_dssp TSSCTTCCEEEEE
T ss_pred ccccCCCCceEEE
Confidence 9988764444433
No 17
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.91 E-value=3.5e-24 Score=183.02 Aligned_cols=136 Identities=26% Similarity=0.490 Sum_probs=112.3
Q ss_pred CCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHH
Q 029806 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTL 95 (187)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~ 95 (187)
......+.+++..+...+.|+..+.++++. .+.+++||||++++.++++++.|.+.+ +.+..+||+|+.++|..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~r~~ 321 (414)
T 3eiq_A 248 ELTLEGIRQFYINVEREEWKLDTLCDLYET-----LTITQAVIFINTRRKVDWLTEKMHARD-FTVSAMHGDMDQKERDV 321 (414)
T ss_dssp CCCTTSCCEEEEECSSSTTHHHHHHHHHHS-----SCCSSCEEECSCHHHHHHHHHHHHTTT-CCCEEC---CHHHHHHH
T ss_pred ccCCCCceEEEEEeChHHhHHHHHHHHHHh-----CCCCcEEEEeCCHHHHHHHHHHHHhcC-CeEEEecCCCCHHHHHH
Confidence 345677899999998888799999999887 456899999999999999999999988 69999999999999999
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC
Q 029806 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 175 (187)
Q Consensus 96 ~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~ 175 (187)
++++|++|. .++||||++ +++|+|+|++++||+||+|.+..+|+||+||++|.
T Consensus 322 ~~~~f~~g~-----------------------~~vlv~T~~----~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 374 (414)
T 3eiq_A 322 IMREFRSGS-----------------------SRVLITTDL----LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRF 374 (414)
T ss_dssp HHHHHSCC--------------------------CEEECSS----CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---
T ss_pred HHHHHHcCC-----------------------CcEEEECCc----cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCC
Confidence 999999984 899999999 99999999999999999999999999999999776
Q ss_pred C--CeEEEEEE
Q 029806 176 G--TSFSDIIL 184 (187)
Q Consensus 176 ~--g~~i~~v~ 184 (187)
+ |.++.++.
T Consensus 375 g~~g~~~~~~~ 385 (414)
T 3eiq_A 375 GRKGVAINMVT 385 (414)
T ss_dssp ----CEEEEEC
T ss_pred CCCceEEEEEc
Confidence 4 66666653
No 18
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.91 E-value=2.9e-23 Score=185.40 Aligned_cols=140 Identities=18% Similarity=0.297 Sum_probs=114.2
Q ss_pred CCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc---CCceEEEEeccCCHHH
Q 029806 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETE 92 (187)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~---~~i~~~~lhg~~~~~e 92 (187)
+.....+.+.+........++..+.+.+........+..++||||+++..++.++..|... + +.+..+||+|+.++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~-~~v~~~h~~~~~~~ 380 (563)
T 3i5x_A 302 PEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKD-LPILEFHGKITQNK 380 (563)
T ss_dssp CSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTT-SCEEEESTTSCHHH
T ss_pred ccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCC-ceEEEecCCCCHHH
Confidence 3445667777777776543444444333322221356789999999999999999999876 6 69999999999999
Q ss_pred HHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 93 RTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 93 R~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
|..++++|++|+ .+|||||++ +++|+|+|+|++||+||+|.+.++|+||+||+
T Consensus 381 R~~~~~~f~~g~-----------------------~~vLvaT~~----~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRa 433 (563)
T 3i5x_A 381 RTSLVKRFKKDE-----------------------SGILVCTDV----GARGMDFPNVHEVLQIGVPSELANYIHRIGRT 433 (563)
T ss_dssp HHHHHHHHHHCS-----------------------SEEEEECGG----GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTS
T ss_pred HHHHHHHHhcCC-----------------------CCEEEEcch----hhcCCCcccCCEEEEECCCCchhhhhhhcCcc
Confidence 999999999984 999999999 99999999999999999999999999999999
Q ss_pred cCCC--CeEEEEE
Q 029806 173 LAAG--TSFSDII 183 (187)
Q Consensus 173 ~r~~--g~~i~~v 183 (187)
||.+ |.++.|+
T Consensus 434 gR~g~~g~~i~~~ 446 (563)
T 3i5x_A 434 ARSGKEGSSVLFI 446 (563)
T ss_dssp SCTTCCEEEEEEE
T ss_pred ccCCCCceEEEEE
Confidence 8875 5555554
No 19
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.90 E-value=4.6e-23 Score=185.59 Aligned_cols=140 Identities=18% Similarity=0.297 Sum_probs=113.4
Q ss_pred CCCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc---CCceEEEEeccCCHHH
Q 029806 16 PSHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETE 92 (187)
Q Consensus 16 ~~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~---~~i~~~~lhg~~~~~e 92 (187)
+.....+.+.+..+.....+...+.+.+........+..++||||+++..++.+++.|.+. + +.+..+||+|+.++
T Consensus 251 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~-~~v~~~hg~~~~~~ 329 (579)
T 3sqw_A 251 PEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKD-LPILEFHGKITQNK 329 (579)
T ss_dssp CSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTT-SCEEEESTTSCHHH
T ss_pred cccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCC-CcEEEecCCCCHHH
Confidence 3445667777777776443443333333221221356789999999999999999999876 6 69999999999999
Q ss_pred HHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 93 RTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 93 R~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
|..++++|+.|+ .+|||||++ +++|+|+|+|++||+||+|.+++.|+||+||+
T Consensus 330 R~~~~~~F~~g~-----------------------~~vLVaT~~----~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRa 382 (579)
T 3sqw_A 330 RTSLVKRFKKDE-----------------------SGILVCTDV----GARGMDFPNVHEVLQIGVPSELANYIHRIGRT 382 (579)
T ss_dssp HHHHHHHHHHCS-----------------------SEEEEECGG----GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTS
T ss_pred HHHHHHHhhcCC-----------------------CeEEEEcch----hhcCCCcccCCEEEEcCCCCCHHHhhhhcccc
Confidence 999999999984 999999999 99999999999999999999999999999999
Q ss_pred cCCC--CeEEEEE
Q 029806 173 LAAG--TSFSDII 183 (187)
Q Consensus 173 ~r~~--g~~i~~v 183 (187)
||.+ |.++.|+
T Consensus 383 gR~g~~g~~i~~~ 395 (579)
T 3sqw_A 383 ARSGKEGSSVLFI 395 (579)
T ss_dssp SCTTCCEEEEEEE
T ss_pred ccCCCCceEEEEE
Confidence 8876 4555444
No 20
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.90 E-value=7.9e-23 Score=182.81 Aligned_cols=124 Identities=19% Similarity=0.420 Sum_probs=109.7
Q ss_pred EEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
|......+ ++..|.++++. .++.++||||++++.++.+++.|...| +.+..+||+|+.++|..++++|++++
T Consensus 215 ~~v~~~~~-~~~~l~~~l~~-----~~~~~~IVf~~sr~~~e~l~~~L~~~g-~~~~~~h~~l~~~~R~~~~~~f~~g~- 286 (523)
T 1oyw_A 215 YMLMEKFK-PLDQLMRYVQE-----QRGKSGIIYCNSRAKVEDTAARLQSKG-ISAAAYHAGLENNVRADVQEKFQRDD- 286 (523)
T ss_dssp EEEEECSS-HHHHHHHHHHH-----TTTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTTS-
T ss_pred EEEEeCCC-HHHHHHHHHHh-----cCCCcEEEEeCCHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHHHHHHHHcCC-
Confidence 44444444 88888888877 456899999999999999999999988 69999999999999999999999984
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCeEEEEE
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDII 183 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~~i~~v 183 (187)
.+|||||++ +++|+|+|+|++|||||+|.+.++|+||+||+||.+..+.+++
T Consensus 287 ----------------------~~vlVaT~a----~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 287 ----------------------LQIVVATVA----FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp ----------------------CSEEEECTT----SCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred ----------------------CeEEEEech----hhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 999999999 9999999999999999999999999999999988764444443
No 21
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=8e-23 Score=171.28 Aligned_cols=130 Identities=24% Similarity=0.455 Sum_probs=117.0
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
..++.+.+..+...+ |+..|.++++. ...++||||++++.++.+++.|...+ +.+..+||+|+.++|..+++
T Consensus 211 ~~~~~~~~~~~~~~~-~~~~l~~~l~~------~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~ 282 (367)
T 1hv8_A 211 NANIEQSYVEVNENE-RFEALCRLLKN------KEFYGLVFCKTKRDTKELASMLRDIG-FKAGAIHGDLSQSQREKVIR 282 (367)
T ss_dssp SSSSEEEEEECCGGG-HHHHHHHHHCS------TTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECSSSCHHHHHHHHH
T ss_pred CCCceEEEEEeChHH-HHHHHHHHHhc------CCCcEEEEECCHHHHHHHHHHHHhcC-CCeEEeeCCCCHHHHHHHHH
Confidence 357888888888777 99888888753 45799999999999999999999988 69999999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC--
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-- 176 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~-- 176 (187)
+|++++ .++||||++ +++|+|+|++++||+||+|.+..+|+||+||++|.+
T Consensus 283 ~f~~~~-----------------------~~vlv~T~~----~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 335 (367)
T 1hv8_A 283 LFKQKK-----------------------IRILIATDV----MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKK 335 (367)
T ss_dssp HHHTTS-----------------------SSEEEECTT----HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSC
T ss_pred HHHcCC-----------------------CeEEEECCh----hhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCc
Confidence 999984 999999999 999999999999999999999999999999997764
Q ss_pred CeEEEEE
Q 029806 177 TSFSDII 183 (187)
Q Consensus 177 g~~i~~v 183 (187)
|.++.++
T Consensus 336 g~~~~~~ 342 (367)
T 1hv8_A 336 GKAISII 342 (367)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 6676665
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.89 E-value=2.8e-22 Score=181.80 Aligned_cols=118 Identities=20% Similarity=0.322 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
++..|.++++. ..+..++||||++++.++++++.|...| +.+..+||+|+.++|..++++|+.++
T Consensus 253 ~~~~l~~~l~~----~~~~~~~IVf~~sr~~~e~la~~L~~~g-~~~~~~h~~l~~~~R~~~~~~F~~g~---------- 317 (591)
T 2v1x_A 253 FIEDIVKLING----RYKGQSGIIYCFSQKDSEQVTVSLQNLG-IHAGAYHANLEPEDKTTVHRKWSANE---------- 317 (591)
T ss_dssp HHHHHHHHHTT----TTTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTTS----------
T ss_pred HHHHHHHHHHH----hccCCCeEEEeCcHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHHHHHHHHcCC----------
Confidence 44555555543 3467899999999999999999999988 69999999999999999999999984
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCeEEEEEE
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDIIL 184 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~~i~~v~ 184 (187)
.+|||||++ +++|||+|+|++|||||+|.+.++|+||+||+||.+..+.+++.
T Consensus 318 -------------~~VlVAT~a----~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 318 -------------IQVVVATVA----FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp -------------SSEEEECTT----SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred -------------CeEEEEech----hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 999999999 99999999999999999999999999999999888655555443
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.88 E-value=6.8e-23 Score=181.16 Aligned_cols=121 Identities=14% Similarity=0.209 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc------------CCceEEEEeccCCHHHHHHHHHHH
Q 029806 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~------------~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
..|+..|.+++..... ..+..++||||+++++++.+++.|... | .....+||+|+.++|..++++|
T Consensus 371 ~~K~~~L~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 371 NPKLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp CHHHHHHHHHHHHHHH-HCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhc-CCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEc-cCCcccccccCHHHHHHHHHHh
Confidence 4499999999976432 245689999999999999999999875 3 3555667889999999999999
Q ss_pred hc-ccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC-CCe
Q 029806 101 RH-TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTS 178 (187)
Q Consensus 101 r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~-~g~ 178 (187)
++ | ..+|||||++ +++|+|+|+|++|||||+|+++..|+||+|| ||. .|.
T Consensus 449 ~~~g-----------------------~~~vLvaT~~----~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~ 500 (556)
T 4a2p_A 449 KTSK-----------------------DNRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSK 500 (556)
T ss_dssp ----------------------------CCEEEEEC---------------CEEEEETCCSCHHHHHHC---------CC
T ss_pred cccC-----------------------ceEEEEEcCc----hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCce
Confidence 99 7 4899999999 9999999999999999999999999999999 666 466
Q ss_pred EEEEE
Q 029806 179 FSDII 183 (187)
Q Consensus 179 ~i~~v 183 (187)
++.++
T Consensus 501 ~~~l~ 505 (556)
T 4a2p_A 501 CILVT 505 (556)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.88 E-value=2.4e-24 Score=189.20 Aligned_cols=135 Identities=19% Similarity=0.349 Sum_probs=0.0
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
.....+.++++.+.....|...|.+++.. ....++||||+++..+++++..|...+ +.+..+||+|+.++|..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lvF~~s~~~~~~l~~~L~~~~-~~v~~lh~~~~~~~R~~~ 375 (479)
T 3fmp_B 302 ETLDTIKQYYVLCSSRDEKFQALCNLYGA-----ITIAQAMIFCHTRKTASWLAAELSKEG-HQVALLSGEMMVEQRAAV 375 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcCCceEEEEEeCCHHHHHHHHHHHHhh-----ccCCceEEEeCcHHHHHHHHHHHHhCC-ccEEEecCCCCHHHHHHH
Confidence 34567888888888766689999998876 345799999999999999999999988 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCC------ChhHHHHhhh
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMT 170 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~------~~~~y~~R~G 170 (187)
+++|++|. .+|||||++ +++|+|+|++++|||||+|. +...|+||+|
T Consensus 376 ~~~f~~g~-----------------------~~iLv~T~~----~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~G 428 (479)
T 3fmp_B 376 IERFREGK-----------------------EKVLVTTNV----CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIG 428 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCC-----------------------CcEEEEccc----cccCCccccCCEEEEecCCCCCccCCCHHHHHHHhc
Confidence 99999984 999999999 99999999999999999994 6789999999
Q ss_pred hccCCC--CeEEEEEE
Q 029806 171 TCLAAG--TSFSDIIL 184 (187)
Q Consensus 171 R~~r~~--g~~i~~v~ 184 (187)
|+||.+ |.++.|+.
T Consensus 429 RagR~g~~G~~i~~~~ 444 (479)
T 3fmp_B 429 RTGRFGKRGLAVNMVD 444 (479)
T ss_dssp ----------------
T ss_pred ccccCCCCceEEEEEc
Confidence 997754 66666653
No 25
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=185.61 Aligned_cols=120 Identities=15% Similarity=0.224 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhcCCCC-CCcEEEEeCChhhHHHHHHHHHcc------CCceEEEEecc--------CCHHHHHHHHHH
Q 029806 35 KMETLVELLHLVVAGRRP-GLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSD--------LAETERTLILEE 99 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~-~~k~IVF~~~~~~~~~l~~~L~~~------~~i~~~~lhg~--------~~~~eR~~~l~~ 99 (187)
|+..|.+++..... ..+ ..++||||+++++++.++++|... | +.+..+||+ |+..+|.+++++
T Consensus 382 k~~~L~~~L~~~~~-~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g-~~~~~lhg~~~~~~~~~~~~~eR~~~~~~ 459 (699)
T 4gl2_A 382 KLTKLRNTIMEQYT-RTEESARGIIFTKTRQSAYALSQWITENEKFAEVG-VKAHHLIGAGHSSEFKPMTQNEQKEVISK 459 (699)
T ss_dssp CSSCSHHHHHHHHH-HSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCCCCcEEEEECcHHHHHHHHHHHHhCccccccC-cceEEEECCCCccCCCCCCHHHHHHHHHH
Confidence 66666666665332 233 689999999999999999999987 6 799999999 999999999999
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCeE
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSF 179 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~~ 179 (187)
|++|+ .+|||||++ +++|||+|+|++|||||+|+++.+|+||+||+ |++|.+
T Consensus 460 F~~g~-----------------------~~VLVaT~~----~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRA-rr~g~~ 511 (699)
T 4gl2_A 460 FRTGK-----------------------INLLIATTV----AEEGLDIKECNIVIRYGLVTNEIAMVQARGRA-RADEST 511 (699)
T ss_dssp HCC--------------------------CCSEEECS----CCTTSCCCSCCCCEEESCCCCHHHHHHHHTTS-CSSSCE
T ss_pred HhcCC-----------------------CcEEEEccc----cccCCccccCCEEEEeCCCCCHHHHHHHcCCC-CCCCce
Confidence 99985 999999999 99999999999999999999999999999995 566666
Q ss_pred EEEEE
Q 029806 180 SDIIL 184 (187)
Q Consensus 180 i~~v~ 184 (187)
+.++.
T Consensus 512 ~~l~~ 516 (699)
T 4gl2_A 512 YVLVA 516 (699)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=5.5e-22 Score=170.43 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=106.8
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEec--------cCCHHHHHHHHHHHhc
Q 029806 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS--------DLAETERTLILEEFRH 102 (187)
Q Consensus 31 ~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg--------~~~~~eR~~~l~~Fr~ 102 (187)
....|+..|.++++.... ..++.++||||+++..++.+++.|...| +.+..+|| +|+.++|.+++++|++
T Consensus 340 ~~~~k~~~l~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~ 417 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQ-RKQNSKIIVFTNYRETAKKIVNELVKDG-IKAKRFVGQASKENDRGLSQREQKLILDEFAR 417 (494)
T ss_dssp CSCHHHHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHTT-CCEEEECCSSCC-------CCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhc-cCCCCeEEEEEccHHHHHHHHHHHHHcC-CCcEEEeccccccccccCCHHHHHHHHHHHhc
Confidence 334499999999988442 2457899999999999999999999988 79999999 9999999999999999
Q ss_pred ccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC-CeEEE
Q 029806 103 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-TSFSD 181 (187)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~-g~~i~ 181 (187)
|+ .++||+|++ +++|+|+|++++||+||+|+++..|+||+||++|.+ |.++.
T Consensus 418 ~~-----------------------~~vLv~T~~----~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~ 470 (494)
T 1wp9_A 418 GE-----------------------FNVLVATSV----GEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVII 470 (494)
T ss_dssp TS-----------------------CSEEEECGG----GGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEE
T ss_pred CC-----------------------ceEEEECCc----cccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEE
Confidence 84 899999999 999999999999999999999999999999997775 55555
Q ss_pred EE
Q 029806 182 II 183 (187)
Q Consensus 182 ~v 183 (187)
++
T Consensus 471 l~ 472 (494)
T 1wp9_A 471 LM 472 (494)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.87 E-value=1.1e-22 Score=179.43 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---Cce--------EEEEeccCCHHHHHHHHHHHh
Q 029806 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DIS--------FSSLHSDLAETERTLILEEFR 101 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~--------~~~lhg~~~~~eR~~~l~~Fr 101 (187)
..|+..|.+++..... ..+..++||||+++++++.+++.|...+ ++. ...+||+|+.++|..++++|+
T Consensus 370 ~~k~~~l~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYH-LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CHHHHHHHHHHHHHHH-HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CHHHHHHHHHHHHHhc-cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 4599999999987443 3456899999999999999999998763 123 444556999999999999999
Q ss_pred c-ccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC-CCeE
Q 029806 102 H-TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTSF 179 (187)
Q Consensus 102 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~-~g~~ 179 (187)
+ | ..+|||||++ +++|+|+|+|++|||||+|+++..|+||+|| ||. +|.+
T Consensus 449 ~~g-----------------------~~~vLvaT~~----~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~ 500 (555)
T 3tbk_A 449 ASG-----------------------DNNILIATSV----ADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSKC 500 (555)
T ss_dssp --------------------------CCSEEEECCC----TTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTTTSCEE
T ss_pred cCC-----------------------CeeEEEEcch----hhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcCCCceE
Confidence 9 7 4899999999 9999999999999999999999999999999 555 5667
Q ss_pred EEEEE
Q 029806 180 SDIIL 184 (187)
Q Consensus 180 i~~v~ 184 (187)
+.+++
T Consensus 501 ~~l~~ 505 (555)
T 3tbk_A 501 FLLTS 505 (555)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 66653
No 28
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.86 E-value=1.4e-23 Score=178.02 Aligned_cols=133 Identities=28% Similarity=0.508 Sum_probs=0.0
Q ss_pred CCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHH
Q 029806 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 18 ~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
...++.+++..+...+.|...+.++++. .+..++||||++++.++.+++.|...+ +.+..+||+|+.++|..++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~ 302 (394)
T 1fuu_A 229 TLEGIKQFYVNVEEEEYKYECLTDLYDS-----ISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIM 302 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCceEEEEEcCchhhHHHHHHHHHhc-----CCCCcEEEEECCHHHHHHHHHHHHHcC-CeEEEeeCCCCHHHHHHHH
Confidence 3456778888887776688888888876 345799999999999999999999888 6999999999999999999
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC-
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG- 176 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~- 176 (187)
++|++++ .++||||++ +++|+|+|++++||+||+|.+..+|+||+||++|.+
T Consensus 303 ~~f~~~~-----------------------~~vlv~T~~----~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 355 (394)
T 1fuu_A 303 KEFRSGS-----------------------SRILISTDL----LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGR 355 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHCCC-----------------------CcEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCC
Confidence 9999984 899999999 999999999999999999999999999999997764
Q ss_pred -CeEEEEE
Q 029806 177 -TSFSDII 183 (187)
Q Consensus 177 -g~~i~~v 183 (187)
|.++.++
T Consensus 356 ~g~~~~~~ 363 (394)
T 1fuu_A 356 KGVAINFV 363 (394)
T ss_dssp --------
T ss_pred CceEEEEE
Confidence 6665554
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.86 E-value=4.3e-21 Score=165.21 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=99.9
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEE-EEeccCCHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDLAETERTL 95 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~-~lhg~~~~~eR~~ 95 (187)
....++.+.+..+ + |...|.++++. . +.++||||+++..++.++..|...| +.+. .+||+ +|.
T Consensus 226 ~~~~~i~~~~~~~---~-~~~~l~~~l~~-~-----~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~h~~----~r~- 289 (414)
T 3oiy_A 226 SVARNITHVRISS---R-SKEKLVELLEI-F-----RDGILIFAQTEEEGKELYEYLKRFK-FNVGETWSEF----EKN- 289 (414)
T ss_dssp CCCCSEEEEEESS---C-CHHHHHHHHHH-H-----CSSEEEEESSHHHHHHHHHHHHHTT-CCEEESSSCH----HHH-
T ss_pred cccccchheeecc---C-HHHHHHHHHHH-c-----CCCEEEEECCHHHHHHHHHHHHHcC-CceehhhcCc----chH-
Confidence 4456778887666 3 67777888877 2 2799999999999999999999988 6888 89985 444
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEE----ecCCCCcCcCCCCCCC-CCEEEEecCC--CChhHHHHh
Q 029806 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAIS-ARVLINYELP--TKKETYIRR 168 (187)
Q Consensus 96 ~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~----Td~~~~~~~rGlDi~~-v~~VI~yd~P--~~~~~y~~R 168 (187)
+++|++|+ .++||| |++ +++|+|+|+ |++||+||+| .+..+|+||
T Consensus 290 -~~~f~~g~-----------------------~~vLvat~s~T~~----~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr 341 (414)
T 3oiy_A 290 -FEDFKVGK-----------------------INILIGVQAYYGK----LTRGVDLPERIKYVIFWGTPSGPDVYTYIQA 341 (414)
T ss_dssp -HHHHHTTS-----------------------CSEEEEECCTTCC----CCCCCCCTTTCCEEEEESCCTTTCHHHHHHH
T ss_pred -HHHHhCCC-----------------------CeEEEEecCcCch----hhccCccccccCEEEEECCCCCCCHHHHHHH
Confidence 99999984 999999 999 999999999 9999999999 999999999
Q ss_pred hhhccCC
Q 029806 169 MTTCLAA 175 (187)
Q Consensus 169 ~GR~~r~ 175 (187)
+||+||.
T Consensus 342 ~GR~gR~ 348 (414)
T 3oiy_A 342 SGRSSRI 348 (414)
T ss_dssp HGGGCCE
T ss_pred hCccccC
Confidence 9999885
No 30
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.85 E-value=1.1e-21 Score=179.15 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=73.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCC---ceEEEE--------eccCCHHHHHHHHHHH
Q 029806 32 LQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD---ISFSSL--------HSDLAETERTLILEEF 100 (187)
Q Consensus 32 ~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~---i~~~~l--------hg~~~~~eR~~~l~~F 100 (187)
...|+..|.++++.... ..+..++||||+++.+++.+++.|...+. +.+..+ ||+|+.++|.+++++|
T Consensus 378 ~~~k~~~L~~ll~~~~~-~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F 456 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYH-LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 456 (696)
T ss_dssp CCHHHHHHHHHHHHHHT-TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhc-cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence 34499999999988432 34568999999999999999999998762 578888 5599999999999999
Q ss_pred hc-ccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC-Ce
Q 029806 101 RH-TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-TS 178 (187)
Q Consensus 101 r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~-g~ 178 (187)
++ |+ .+|||||++ +++|||+|+|++|||||+|.++++|+||+|| ||.. |.
T Consensus 457 ~~~g~-----------------------~~vLVaT~v----~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~ 508 (696)
T 2ykg_A 457 KASGD-----------------------HNILIATSV----ADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 508 (696)
T ss_dssp ----C-----------------------CSCSEEEES----SCCC---CCCSEEEEESCC--CCCC----------CCCE
T ss_pred HhcCC-----------------------ccEEEEech----hhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcCCCce
Confidence 98 74 999999999 9999999999999999999999999999999 8763 44
Q ss_pred EEEE
Q 029806 179 FSDI 182 (187)
Q Consensus 179 ~i~~ 182 (187)
++.+
T Consensus 509 ~~~l 512 (696)
T 2ykg_A 509 CFLL 512 (696)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 31
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=4.5e-21 Score=159.08 Aligned_cols=125 Identities=22% Similarity=0.313 Sum_probs=104.6
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
..++.+.+..+.... +. ..+.+.. ....++||||++++.++.+++.|. .+..+||+|+..+|.++++
T Consensus 194 ~~~~~~~~~~~~~~~-~~--~~~~~~~-----~~~~~~lvf~~~~~~~~~l~~~l~-----~~~~~~~~~~~~~r~~~~~ 260 (337)
T 2z0m_A 194 LANVEHKFVHVKDDW-RS--KVQALRE-----NKDKGVIVFVRTRNRVAKLVRLFD-----NAIELRGDLPQSVRNRNID 260 (337)
T ss_dssp GGGEEEEEEECSSSS-HH--HHHHHHT-----CCCSSEEEECSCHHHHHHHHTTCT-----TEEEECTTSCHHHHHHHHH
T ss_pred cCCceEEEEEeChHH-HH--HHHHHHh-----CCCCcEEEEEcCHHHHHHHHHHhh-----hhhhhcCCCCHHHHHHHHH
Confidence 456677777776654 22 2244443 567899999999999999998874 5788999999999999999
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC--
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-- 176 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~-- 176 (187)
+|++|+ .++||||++ +++|+|+|++++||+||+|.+..+|+||+||++|.+
T Consensus 261 ~f~~~~-----------------------~~vlv~T~~----~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~ 313 (337)
T 2z0m_A 261 AFREGE-----------------------YDMLITTDV----ASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRK 313 (337)
T ss_dssp HHHTTS-----------------------CSEEEECHH----HHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCC
T ss_pred HHHcCC-----------------------CcEEEEcCc----cccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCC
Confidence 999984 999999999 999999999999999999999999999999997764
Q ss_pred CeEEEEE
Q 029806 177 TSFSDII 183 (187)
Q Consensus 177 g~~i~~v 183 (187)
|.++.|+
T Consensus 314 g~~~~~~ 320 (337)
T 2z0m_A 314 GEAITFI 320 (337)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 5555554
No 32
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.85 E-value=2.4e-21 Score=180.49 Aligned_cols=122 Identities=14% Similarity=0.202 Sum_probs=71.3
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc------------CCceEEEEeccCCHHHHHHHHHHH
Q 029806 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~------------~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
..|+..|.+++..... ..++.++||||+++++++.++++|... | .....+||+|+.++|..++++|
T Consensus 612 ~~K~~~L~~lL~~~~~-~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G-~~~~~~hg~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 612 NPKLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAF 689 (797)
T ss_dssp CHHHHHHHHHHHHHHH-HCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred ChHHHHHHHHHHHHhc-cCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEe-cCCcccCCCCCHHHHHHHHHHh
Confidence 4499999999986332 355689999999999999999999764 3 3566778999999999999999
Q ss_pred hc-ccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC-CCe
Q 029806 101 RH-TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTS 178 (187)
Q Consensus 101 r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~-~g~ 178 (187)
++ | ..++||||++ +++|||+|+|++|||||+|+++..|+||+|| ||. .|.
T Consensus 690 ~~~g-----------------------~~~vLVaT~~----~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~~~g~ 741 (797)
T 4a2q_A 690 KTSK-----------------------DNRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSK 741 (797)
T ss_dssp ---------------------------CCSEEEEECC-----------CCCSEEEEESCCSCHHHHHTC--------CCC
T ss_pred hccC-----------------------CceEEEEcCc----hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCce
Confidence 99 7 4899999999 9999999999999999999999999999999 666 467
Q ss_pred EEEEEE
Q 029806 179 FSDIIL 184 (187)
Q Consensus 179 ~i~~v~ 184 (187)
++.+++
T Consensus 742 ~i~l~~ 747 (797)
T 4a2q_A 742 CILVTS 747 (797)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 766653
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.85 E-value=6.1e-22 Score=176.06 Aligned_cols=135 Identities=20% Similarity=0.379 Sum_probs=97.8
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
.....+.+.+..+.....|...+.++++. ...+++||||++++.++.++..|.+.+ +.+..+||+|+..+|..+
T Consensus 326 ~~~~~~~~~~~~~~~~~~k~~~l~~ll~~-----~~~~~~LVF~~s~~~a~~l~~~L~~~~-~~v~~~hg~~~~~~R~~i 399 (508)
T 3fho_A 326 LSVEGIKQLYMDCQSEEHKYNVLVELYGL-----LTIGQSIIFCKKKDTAEEIARRMTADG-HTVACLTGNLEGAQRDAI 399 (508)
T ss_dssp ----CCCCEEEEC--CHHHHHHHHHHHC--------CCCEEEBCSSTTTTTHHHHHHTTTT-CCCCEEC-----CTTGGG
T ss_pred CCcccceEEEEECCchHHHHHHHHHHHHh-----cCCCcEEEEECCHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHH
Confidence 44567888888887777788888888876 345899999999999999999999988 699999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCC------CChhHHHHhhh
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------TKKETYIRRMT 170 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P------~~~~~y~~R~G 170 (187)
+++|++|+ .++||+|++ +++|+|+|++++||+||+| .+...|+||+|
T Consensus 400 l~~f~~g~-----------------------~~VLVaT~~----l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~G 452 (508)
T 3fho_A 400 MDSFRVGT-----------------------SKVLVTTNV----IARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIG 452 (508)
T ss_dssp THHHHSSS-----------------------CCCCEECC---------CCCTTCCEEEC----CC-----CTHHHHHTTS
T ss_pred HHHHHCCC-----------------------CeEEEeCCh----hhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhh
Confidence 99999984 899999999 9999999999999999999 78999999999
Q ss_pred hccCCC--CeEEEEEE
Q 029806 171 TCLAAG--TSFSDIIL 184 (187)
Q Consensus 171 R~~r~~--g~~i~~v~ 184 (187)
|+||.+ |.++.|+.
T Consensus 453 RagR~g~~g~~i~l~~ 468 (508)
T 3fho_A 453 RTGRFGRVGVSINFVH 468 (508)
T ss_dssp CCC-----CEEEEEEC
T ss_pred hcCCCCCCcEEEEEEe
Confidence 997764 66666653
No 34
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.84 E-value=1.6e-20 Score=155.37 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHHHHHhcccccccccc
Q 029806 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~ 111 (187)
..|+..|.++++.+.. .+.++||||++...++.+...|... | +.+..+||+++.++|..++++|+.+.
T Consensus 95 s~K~~~L~~ll~~~~~---~~~kvlIFs~~~~~~~~l~~~L~~~~g-~~~~~l~G~~~~~~R~~~i~~F~~~~------- 163 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKELN-TEVPFLYGELSKKERDDIISKFQNNP------- 163 (271)
T ss_dssp CHHHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHC-SCCCEECTTSCHHHHHHHHHHHHHCT-------
T ss_pred CHHHHHHHHHHHHHHh---CCCeEEEEeccHHHHHHHHHHHHHhcC-CcEEEEECCCCHHHHHHHHHHhcCCC-------
Confidence 4499999999988532 4579999999999999999999875 7 69999999999999999999999983
Q ss_pred cccCCCCCcCCCCCCcee-EEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 112 TEQSGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
..+ +|++|++ +++|+|++.+++||+||+|+++..|.||+||++|.+
T Consensus 164 ---------------~~~v~L~st~~----~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~G 210 (271)
T 1z5z_A 164 ---------------SVKFIVLSVKA----GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIG 210 (271)
T ss_dssp ---------------TCCEEEEECCT----TCCCCCCTTCSEEEECSCCSCTTTC-----------
T ss_pred ---------------CCCEEEEehhh----hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccC
Confidence 355 7999999 999999999999999999999999999999995553
No 35
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.84 E-value=5.2e-21 Score=181.25 Aligned_cols=121 Identities=14% Similarity=0.209 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc------------CCceEEEEeccCCHHHHHHHHHHH
Q 029806 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~------------~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
..|+..|.+++..... ..++.++||||+++++++.++++|... | .....+||+|+..+|.+++++|
T Consensus 612 ~~K~~~L~~lL~~~~~-~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G-~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 612 NPKLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CHHHHHHHHHHHHTTT-SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CHHHHHHHHHHHHHhc-cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEec-CCCcccCCCCCHHHHHHHHHHh
Confidence 4599999999988432 356799999999999999999999876 3 3566678999999999999999
Q ss_pred hc-ccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC-CCe
Q 029806 101 RH-TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTS 178 (187)
Q Consensus 101 r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~-~g~ 178 (187)
+. | ..++||||++ +++|||+|+|++|||||+|+++..|+||+|| ||. .|.
T Consensus 690 r~~g-----------------------~~~VLVaT~~----~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~~~g~ 741 (936)
T 4a2w_A 690 KTSK-----------------------DNRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSK 741 (936)
T ss_dssp ---------------------------CCSEEEEECC----------CCCCSEEEEESCCSCSHHHHCC--------CCC
T ss_pred hccC-----------------------CeeEEEEeCc----hhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCCE
Confidence 99 7 4999999999 9999999999999999999999999999999 666 366
Q ss_pred EEEEE
Q 029806 179 FSDII 183 (187)
Q Consensus 179 ~i~~v 183 (187)
++.++
T Consensus 742 vi~Li 746 (936)
T 4a2w_A 742 CILVT 746 (936)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.84 E-value=9.7e-21 Score=176.03 Aligned_cols=126 Identities=12% Similarity=0.085 Sum_probs=105.8
Q ss_pred EEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
++.+...+ |...|.+++.... ..+.++||||+|+..++.|+..|.+.| +++..|||++.+.+|..+.++|+.
T Consensus 409 ~v~~~~~~-K~~al~~~i~~~~---~~~~pvLVft~s~~~se~Ls~~L~~~g-i~~~vLhg~~~~rEr~ii~~ag~~--- 480 (844)
T 1tf5_A 409 LIYRTMEG-KFKAVAEDVAQRY---MTGQPVLVGTVAVETSELISKLLKNKG-IPHQVLNAKNHEREAQIIEEAGQK--- 480 (844)
T ss_dssp EEESSHHH-HHHHHHHHHHHHH---HHTCCEEEEESCHHHHHHHHHHHHTTT-CCCEEECSSCHHHHHHHHTTTTST---
T ss_pred EEEeCHHH-HHHHHHHHHHHHH---hcCCcEEEEECCHHHHHHHHHHHHHCC-CCEEEeeCCccHHHHHHHHHcCCC---
Confidence 45555555 9999999887522 124689999999999999999999999 799999999988888766555554
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCC--------CCCEEEEecCCCChhHHHHhhhhccCC--
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTCLAA-- 175 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~--------~v~~VI~yd~P~~~~~y~~R~GR~~r~-- 175 (187)
..|+||||+ ++||+|++ ++.+|||||+|.+.+.|.||+||+||.
T Consensus 481 ----------------------g~VlIATdm----AgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~ 534 (844)
T 1tf5_A 481 ----------------------GAVTIATNM----AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGD 534 (844)
T ss_dssp ----------------------TCEEEEETT----SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGC
T ss_pred ----------------------CeEEEeCCc----cccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCC
Confidence 469999999 99999999 788999999999999999999999766
Q ss_pred CCeEEEEEEe
Q 029806 176 GTSFSDIILL 185 (187)
Q Consensus 176 ~g~~i~~v~~ 185 (187)
+|.+++|+++
T Consensus 535 ~G~s~~~vs~ 544 (844)
T 1tf5_A 535 PGITQFYLSM 544 (844)
T ss_dssp CEEEEEEEET
T ss_pred CCeEEEEecH
Confidence 4777777763
No 37
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.84 E-value=3.7e-20 Score=169.86 Aligned_cols=118 Identities=12% Similarity=0.194 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
+...|...+.... ..+.++||||+++..++.+++.|...| +.+..+||+|+..+|..++++|+.|.
T Consensus 430 ~~~~Ll~~l~~~~---~~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~l~~f~~g~---------- 495 (661)
T 2d7d_A 430 QIDDLIGEIQARI---ERNERVLVTTLTKKMSEDLTDYLKEIG-IKVNYLHSEIKTLERIEIIRDLRLGK---------- 495 (661)
T ss_dssp HHHHHHHHHHHHH---TTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHHTS----------
T ss_pred hHHHHHHHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHhcC-CCeEEEeCCCCHHHHHHHHHHHhcCC----------
Confidence 5555555554422 245799999999999999999999988 79999999999999999999999984
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecC-----CCChhHHHHhhhhccCC-CCeEEEEE
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLAA-GTSFSDII 183 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~-----P~~~~~y~~R~GR~~r~-~g~~i~~v 183 (187)
.+|||+|++ +++|+|+|++++||+||. |.+.++|+||+||+||. .|.++.|+
T Consensus 496 -------------~~VLVaT~~----l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~ 553 (661)
T 2d7d_A 496 -------------YDVLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYA 553 (661)
T ss_dssp -------------CSEEEESCC----CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEEC
T ss_pred -------------eEEEEecch----hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEE
Confidence 999999999 999999999999999997 99999999999999886 47777665
No 38
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.83 E-value=4.1e-20 Score=169.58 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
+...|...+.... ..+.++||||+++..++.+++.|...| +.+..+||+|+..+|..++++|+.|.
T Consensus 424 ~~~~Ll~~l~~~~---~~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~~~~f~~g~---------- 489 (664)
T 1c4o_A 424 QILDLMEGIRERA---ARGERTLVTVLTVRMAEELTSFLVEHG-IRARYLHHELDAFKRQALIRDLRLGH---------- 489 (664)
T ss_dssp HHHHHHHHHHHHH---HTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHTTS----------
T ss_pred hHHHHHHHHHHHH---hcCCEEEEEECCHHHHHHHHHHHHhcC-CCceeecCCCCHHHHHHHHHHhhcCC----------
Confidence 5665655554422 235799999999999999999999998 79999999999999999999999984
Q ss_pred CCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecC-----CCChhHHHHhhhhccCC-CCeEEEEE
Q 029806 115 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLAA-GTSFSDII 183 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~-----P~~~~~y~~R~GR~~r~-~g~~i~~v 183 (187)
.+|||+|++ +++|+|+|++++||+||. |.+.++|+||+||+||. .|.+++|+
T Consensus 490 -------------~~VLvaT~~----l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~ 547 (664)
T 1c4o_A 490 -------------YDCLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYA 547 (664)
T ss_dssp -------------CSEEEESCC----CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEEC
T ss_pred -------------ceEEEccCh----hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEEE
Confidence 999999999 999999999999999997 99999999999999887 36666654
No 39
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.82 E-value=6.8e-20 Score=168.20 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=104.7
Q ss_pred EEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
.+.....+ |...|.+.+.... ..+.++||||+|+..++.++..|.+.| +++..|||++...+|.-+.++|+.
T Consensus 451 ~vy~t~~e-K~~al~~~I~~~~---~~gqpVLVFt~S~e~sE~Ls~~L~~~G-i~~~vLhgkq~~rE~~ii~~ag~~--- 522 (822)
T 3jux_A 451 LVFRTQKE-KYEKIVEEIEKRY---KKGQPVLVGTTSIEKSELLSSMLKKKG-IPHQVLNAKYHEKEAEIVAKAGQK--- 522 (822)
T ss_dssp EEESSHHH-HHHHHHHHHHHHH---HHTCCEEEEESSHHHHHHHHHHHHTTT-CCCEEECSCHHHHHHHHHHHHHST---
T ss_pred EEEecHHH-HHHHHHHHHHHHh---hCCCCEEEEECCHHHHHHHHHHHHHCC-CCEEEeeCCchHHHHHHHHhCCCC---
Confidence 44555555 9999999887632 135799999999999999999999998 799999999766666656666655
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCC--------CCCEEEEecCCCChhHHHHhhhhccCCC-
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTCLAAG- 176 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~--------~v~~VI~yd~P~~~~~y~~R~GR~~r~~- 176 (187)
..|+||||+ ++||+|++ +..+||||++|.+.+.|.||+||+||.+
T Consensus 523 ----------------------g~VtVATdm----AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~ 576 (822)
T 3jux_A 523 ----------------------GMVTIATNM----AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGD 576 (822)
T ss_dssp ----------------------TCEEEEETT----TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSC
T ss_pred ----------------------CeEEEEcch----hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCC
Confidence 459999999 99999998 5679999999999999999999997764
Q ss_pred -CeEEEEEEe
Q 029806 177 -TSFSDIILL 185 (187)
Q Consensus 177 -g~~i~~v~~ 185 (187)
|.++.|+++
T Consensus 577 ~G~a~~fvsl 586 (822)
T 3jux_A 577 PGESIFFLSL 586 (822)
T ss_dssp CCEEEEEEET
T ss_pred CeeEEEEech
Confidence 888888764
No 40
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.80 E-value=2.1e-19 Score=170.80 Aligned_cols=119 Identities=14% Similarity=0.189 Sum_probs=106.1
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHc-cCCceEEEEeccCCHHHHHHHHHHHhcccccccccc
Q 029806 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~-~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~ 111 (187)
..|+..|.++++. .++.++||||+++..++.++..|.. .| +.+..+||+|+..+|..++++|++++
T Consensus 488 ~~K~~~L~~ll~~-----~~~~k~iVF~~~~~~~~~l~~~L~~~~g-~~~~~lhG~~~~~~R~~~l~~F~~g~------- 554 (968)
T 3dmq_A 488 DPRVEWLMGYLTS-----HRSQKVLVICAKAATALQLEQVLREREG-IRAAVFHEGMSIIERDRAAAWFAEED------- 554 (968)
T ss_dssp SHHHHHHHHHHHH-----TSSSCCCEECSSTHHHHHHHHHHHTTTC-CCEEEECTTSCTTHHHHHHHHHHSTT-------
T ss_pred cHHHHHHHHHHHh-----CCCCCEEEEeCcHHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhCCC-------
Confidence 4499999999988 5578999999999999999999995 47 79999999999999999999999982
Q ss_pred cccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC--CeEEEE
Q 029806 112 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDI 182 (187)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~--g~~i~~ 182 (187)
+..++||||++ +++|+|+|++++||+||+|+++..|.||+||++|.+ |.++.+
T Consensus 555 --------------~~~~vLvaT~v----~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~ 609 (968)
T 3dmq_A 555 --------------TGAQVLLCSEI----GSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIH 609 (968)
T ss_dssp --------------SSCEEEECSCC----TTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEE
T ss_pred --------------CcccEEEecch----hhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEE
Confidence 23999999999 999999999999999999999999999999996654 444444
No 41
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.80 E-value=2.2e-19 Score=172.52 Aligned_cols=100 Identities=15% Similarity=0.245 Sum_probs=87.1
Q ss_pred CCCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEE-EEeccCCHHHHHH
Q 029806 17 SHFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDLAETERTL 95 (187)
Q Consensus 17 ~~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~-~lhg~~~~~eR~~ 95 (187)
....++.+.|+.+ + |...|.++++. . ++++||||+++..+++++..|...| +.+. .+||+ |.+
T Consensus 283 ~~~~~i~~~~~~~---~-k~~~L~~ll~~-~-----~~~~LVF~~s~~~a~~l~~~L~~~g-~~~~~~lhg~-----rr~ 346 (1104)
T 4ddu_A 283 SVARNITHVRISS---R-SKEKLVELLEI-F-----RDGILIFAQTEEEGKELYEYLKRFK-FNVGETWSEF-----EKN 346 (1104)
T ss_dssp CCCCCEEEEEESC---C-CHHHHHHHHHH-H-----CSSEEEEESSSHHHHHHHHHHHHTT-CCEEESSSSH-----HHH
T ss_pred CCcCCceeEEEec---C-HHHHHHHHHHh-c-----CCCEEEEECcHHHHHHHHHHHHhCC-CCeeeEecCc-----HHH
Confidence 4567788888776 3 67777888877 2 2799999999999999999999988 6898 99993 555
Q ss_pred HHHHHhcccccccccccccCCCCCcCCCCCCceeEEEE----ecCCCCcCcCCCCCCC-CCEEEEecCCC
Q 029806 96 ILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAIS-ARVLINYELPT 160 (187)
Q Consensus 96 ~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~----Td~~~~~~~rGlDi~~-v~~VI~yd~P~ 160 (187)
+++|++|+ .++||| |++ ++||+|+|+ |++|||||+|.
T Consensus 347 -l~~F~~G~-----------------------~~VLVatas~Tdv----larGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 347 -FEDFKVGK-----------------------INILIGVQAYYGK----LTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp -HHHHHHTS-----------------------CSEEEEETTTHHH----HCCSCCCTTTCCEEEEESCCE
T ss_pred -HHHHHCCC-----------------------CCEEEEecCCCCe----eEecCcCCCCCCEEEEECCCC
Confidence 99999995 999999 999 999999999 99999999998
No 42
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.79 E-value=9.5e-20 Score=169.70 Aligned_cols=132 Identities=11% Similarity=0.124 Sum_probs=106.0
Q ss_pred CCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHc-----------cCCceEEEEeccC
Q 029806 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-----------LADISFSSLHSDL 88 (187)
Q Consensus 20 ~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~-----------~~~i~~~~lhg~~ 88 (187)
..+.++|...+..+ +.....+.+..+.. ..+.+++||||++++.++.+++.|.+ .+ +.+..+||+|
T Consensus 272 ~pv~~~~~~~~~~~-~~~~~l~~l~~~~~-~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~-~~v~~lhg~l 348 (773)
T 2xau_A 272 YPVELYYTPEFQRD-YLDSAIRTVLQIHA-TEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGP-LSVYPLYGSL 348 (773)
T ss_dssp CCEEEECCSSCCSC-HHHHHHHHHHHHHH-HSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECTTC
T ss_pred cceEEEEecCCchh-HHHHHHHHHHHHHH-hcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCC-eEEEEeCCCC
Confidence 45777777666665 44433333322221 13568999999999999999999974 34 7899999999
Q ss_pred CHHHHHHHHHHHh-----cccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecC-----
Q 029806 89 AETERTLILEEFR-----HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL----- 158 (187)
Q Consensus 89 ~~~eR~~~l~~Fr-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~----- 158 (187)
+.++|..+++.|+ .| ..+|||||++ +++|||+|+|++||+|++
T Consensus 349 ~~~eR~~v~~~f~~~~~~~g-----------------------~~kVlVAT~i----ae~GidIp~v~~VId~g~~k~~~ 401 (773)
T 2xau_A 349 PPHQQQRIFEPAPESHNGRP-----------------------GRKVVISTNI----AETSLTIDGIVYVVDPGFSKQKV 401 (773)
T ss_dssp CHHHHGGGGSCCCCCSSSSC-----------------------CEEEEEECTH----HHHTCCCTTEEEEEECSEEEEEE
T ss_pred CHHHHHHHHhhcccccCCCC-----------------------ceEEEEeCcH----HHhCcCcCCeEEEEeCCCcccee
Confidence 9999999999998 66 5999999999 999999999999999888
Q ss_pred -------------CCChhHHHHhhhhccCC-CCeEEE
Q 029806 159 -------------PTKKETYIRRMTTCLAA-GTSFSD 181 (187)
Q Consensus 159 -------------P~~~~~y~~R~GR~~r~-~g~~i~ 181 (187)
|.+..+|+||+||+||. .|.++.
T Consensus 402 yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~ 438 (773)
T 2xau_A 402 YNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFR 438 (773)
T ss_dssp EETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEE
T ss_pred eccccCccccccccCCHHHHHhhccccCCCCCCEEEE
Confidence 89999999999999987 344443
No 43
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.78 E-value=7.5e-19 Score=163.28 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=107.8
Q ss_pred EEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
++.+...+ |...|.+.+.... ..+.++||||+|+..++.|+..|.+.| +++..|||++.+.+|.-+.++|+.|
T Consensus 418 ~v~~~~~~-K~~al~~~i~~~~---~~gqpvLVft~sie~se~Ls~~L~~~g-i~~~vLnak~~~rEa~iia~agr~G-- 490 (853)
T 2fsf_A 418 LVYMTEAE-KIQAIIEDIKERT---AKGQPVLVGTISIEKSELVSNELTKAG-IKHNVLNAKFHANEAAIVAQAGYPA-- 490 (853)
T ss_dssp EEESSHHH-HHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHTT-CCCEECCTTCHHHHHHHHHTTTSTT--
T ss_pred EEEeCHHH-HHHHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHHCC-CCEEEecCChhHHHHHHHHhcCCCC--
Confidence 45565555 9999999887622 245789999999999999999999999 7999999999888888888888774
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCC-----------------------------------
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA----------------------------------- 150 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v----------------------------------- 150 (187)
.|+||||+ ++||+|++..
T Consensus 491 -----------------------~VtIATnm----AgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 543 (853)
T 2fsf_A 491 -----------------------AVTIATNM----AGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEA 543 (853)
T ss_dssp -----------------------CEEEEESC----CSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------eEEEeccc----ccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhc
Confidence 59999999 9999999974
Q ss_pred --CEEEEecCCCChhHHHHhhhhccCCC--CeEEEEEEe
Q 029806 151 --RVLINYELPTKKETYIRRMTTCLAAG--TSFSDIILL 185 (187)
Q Consensus 151 --~~VI~yd~P~~~~~y~~R~GR~~r~~--g~~i~~v~~ 185 (187)
.||||||+|.+.+.|.||+||+||.+ |.++.|+++
T Consensus 544 GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~ 582 (853)
T 2fsf_A 544 GGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSM 582 (853)
T ss_dssp TSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEET
T ss_pred CCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecc
Confidence 69999999999999999999997664 777777763
No 44
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.78 E-value=2.8e-19 Score=156.45 Aligned_cols=105 Identities=21% Similarity=0.251 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccc
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 113 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~ 113 (187)
.|+..|.++++. ..+.++||||++++.++++++.|. +..+||+++.++|.+++++|++|+
T Consensus 335 ~k~~~l~~~l~~-----~~~~k~lvF~~~~~~~~~l~~~l~------~~~~~g~~~~~~R~~~~~~F~~g~--------- 394 (472)
T 2fwr_A 335 NKIRKLREILER-----HRKDKIIIFTRHNELVYRISKVFL------IPAITHRTSREEREEILEGFRTGR--------- 394 (472)
T ss_dssp HHHHHHHHHHHH-----TSSSCBCCBCSCHHHHHHHHHHTT------CCBCCSSSCSHHHHTHHHHHHHSS---------
T ss_pred HHHHHHHHHHHh-----CCCCcEEEEECCHHHHHHHHHHhC------cceeeCCCCHHHHHHHHHHHhCCC---------
Confidence 388999999988 456899999999999999999883 446999999999999999999984
Q ss_pred cCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 114 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 114 ~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
.++||+|++ +++|+|+|++++||+||.|+++..|+||+||++|.+
T Consensus 395 --------------~~vLv~T~~----~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g 439 (472)
T 2fwr_A 395 --------------FRAIVSSQV----LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 439 (472)
T ss_dssp --------------CSBCBCSSC----CCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCC
T ss_pred --------------CCEEEEcCc----hhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCC
Confidence 999999999 999999999999999999999999999999997765
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.77 E-value=2.9e-19 Score=156.52 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=81.0
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
++++||||++++.++.+++.|...+ +.+..+|| ++|..++++|++|+ .+|||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~-~~v~~lhg----~~R~~~~~~F~~g~-----------------------~~vLV 228 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAG-KSVVVLNR----KTFEREYPTIKQKK-----------------------PDFIL 228 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEECCS----SSCC--------CC-----------------------CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-CCEEEecc----hhHHHHHhhhcCCC-----------------------ceEEE
Confidence 4799999999999999999999988 69999999 46889999999984 99999
Q ss_pred EecCCCCcCcCCCCCCCCCEEEE-------------------ecCCCChhHHHHhhhhccCC---CCeEEEEE
Q 029806 133 VTDACLPLLSSGESAISARVLIN-------------------YELPTKKETYIRRMTTCLAA---GTSFSDII 183 (187)
Q Consensus 133 ~Td~~~~~~~rGlDi~~v~~VI~-------------------yd~P~~~~~y~~R~GR~~r~---~g~~i~~v 183 (187)
||++ +++|+|+| +++||| |+.|.+.++|+||+||+||. .|.++.|+
T Consensus 229 aT~v----~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 229 ATDI----AEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp ESSS----TTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ECCh----hheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 9999 99999999 999996 99999999999999999886 35666553
No 46
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.77 E-value=6.9e-19 Score=154.46 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=84.5
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
.+++||||++++.++++++.|.+.| +.+..+||++. ..++++|++|+ .++||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g-~~~~~lh~~~~----~~~~~~f~~g~-----------------------~~vLV 239 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSG-KRVIQLSRKTF----DTEYPKTKLTD-----------------------WDFVV 239 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTT-CCEEEECTTTH----HHHGGGGGSSC-----------------------CSEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcC-CeEEECCHHHH----HHHHHhhccCC-----------------------ceEEE
Confidence 4699999999999999999999988 69999999754 57899999984 99999
Q ss_pred EecCCCCcCcCCCCCCCCCEEEEec--------------------CCCChhHHHHhhhhccCCCC
Q 029806 133 VTDACLPLLSSGESAISARVLINYE--------------------LPTKKETYIRRMTTCLAAGT 177 (187)
Q Consensus 133 ~Td~~~~~~~rGlDi~~v~~VI~yd--------------------~P~~~~~y~~R~GR~~r~~g 177 (187)
||++ +++|+|+|+ ++||||| .|.+.++|+||+||+||.+.
T Consensus 240 aT~v----~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 240 TTDI----SEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 299 (451)
T ss_dssp ECGG----GGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred ECCH----HHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCC
Confidence 9999 999999999 9999999 99999999999999987753
No 47
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.77 E-value=9.8e-19 Score=159.35 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=88.2
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
.+++||||++++.++.+++.|.+.+ +++..+||+ +|.+++++|++|+ .++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g-~~v~~lhg~----~R~~~l~~F~~g~-----------------------~~VLV 406 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSG-KRVIQLSRK----TFDTEYPKTKLTD-----------------------WDFVV 406 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTT----THHHHTTHHHHSC-----------------------CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcC-CcEEEEChH----HHHHHHHhhcCCC-----------------------cEEEE
Confidence 4799999999999999999999998 699999984 7888999999984 99999
Q ss_pred EecCCCCcCcCCCCCCCCCEE--------------------EEecCCCChhHHHHhhhhccCCC---CeEEEEE
Q 029806 133 VTDACLPLLSSGESAISARVL--------------------INYELPTKKETYIRRMTTCLAAG---TSFSDII 183 (187)
Q Consensus 133 ~Td~~~~~~~rGlDi~~v~~V--------------------I~yd~P~~~~~y~~R~GR~~r~~---g~~i~~v 183 (187)
|||+ ++||+|+| +++| ||||+|.+.++|+||+||+||.+ |.++.|+
T Consensus 407 aTdv----~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~ 475 (618)
T 2whx_A 407 TTDI----SEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 475 (618)
T ss_dssp ECGG----GGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ECcH----HHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEc
Confidence 9999 99999997 9988 88899999999999999998873 5555554
No 48
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.76 E-value=9.8e-19 Score=167.49 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=79.1
Q ss_pred CCCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHH
Q 029806 18 HFSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 18 ~~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
...++.++++ ..+ |...|.++++. . +.++||||++++.++.+++.|... +.+..+||+| ..++
T Consensus 250 ~~~~i~~~~~---~~~-k~~~L~~ll~~-----~-~~~~LVF~~t~~~a~~l~~~L~~~--~~v~~lhg~~-----~~~l 312 (1054)
T 1gku_B 250 TVRNVEDVAV---NDE-SISTLSSILEK-----L-GTGGIIYARTGEEAEEIYESLKNK--FRIGIVTATK-----KGDY 312 (1054)
T ss_dssp CCCCEEEEEE---SCC-CTTTTHHHHTT-----S-CSCEEEEESSHHHHHHHHHTTTTS--SCEEECTTSS-----SHHH
T ss_pred CcCCceEEEe---chh-HHHHHHHHHhh-----c-CCCEEEEEcCHHHHHHHHHHHhhc--cCeeEEeccH-----HHHH
Confidence 3456777776 233 77888888876 1 478999999999999999999887 5999999998 3788
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEE----ecCCCCcCcCCCCCCCC-CEEEEecCC
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAISA-RVLINYELP 159 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~----Td~~~~~~~rGlDi~~v-~~VI~yd~P 159 (187)
++|+.|. .++||| |++ ++||||+|+| ++|||||+|
T Consensus 313 ~~F~~G~-----------------------~~VLVaTas~Tdv----~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 313 EKFVEGE-----------------------IDHLIGTAHYYGT----LVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHHHTS-----------------------CSEEEEECC----------CCSCCTTTCCEEEEESCC
T ss_pred HHHHcCC-----------------------CcEEEEecCCCCe----eEeccccCCcccEEEEeCCC
Confidence 9999984 999999 899 9999999996 999999999
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.76 E-value=2.5e-19 Score=157.69 Aligned_cols=99 Identities=8% Similarity=-0.026 Sum_probs=86.3
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
.+++||||++++.++.+++.|...+ +.+..+||+ +|..++++|++|. .+|||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g-~~v~~lh~~----~R~~~~~~f~~g~-----------------------~~iLV 241 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAG-KKVIQLNRK----SYDTEYPKCKNGD-----------------------WDFVI 241 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEEESTT----CCCCCGGGSSSCC-----------------------CSEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcC-CcEEecCHH----HHHHHHhhccCCC-----------------------ceEEE
Confidence 4799999999999999999999988 699999995 7788899999984 99999
Q ss_pred EecCCCCcCcCCCCCCCCCEEEE--------------------ecCCCChhHHHHhhhhccCC---CCeEEEEEE
Q 029806 133 VTDACLPLLSSGESAISARVLIN--------------------YELPTKKETYIRRMTTCLAA---GTSFSDIIL 184 (187)
Q Consensus 133 ~Td~~~~~~~rGlDi~~v~~VI~--------------------yd~P~~~~~y~~R~GR~~r~---~g~~i~~v~ 184 (187)
||++ +++|+|+|+ ++||| ||+|.+.++|+||+||+||. .|.+++|++
T Consensus 242 aT~v----~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~ 311 (459)
T 2z83_A 242 TTDI----SEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGG 311 (459)
T ss_dssp ESSC----C---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ECCh----HHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEc
Confidence 9999 999999999 99999 78999999999999999877 456666653
No 50
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.76 E-value=3.2e-18 Score=159.61 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=106.5
Q ss_pred EEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
++.+...+ |...|.+.+.... ..+.++||||+|+..++.|+..|.+.| +++..|||++.+.+|.-+.+.|+.|
T Consensus 437 ~v~~t~~~-K~~al~~~i~~~~---~~gqpvLVft~Sie~sE~Ls~~L~~~G-i~~~vLnak~~~rEa~iia~agr~G-- 509 (922)
T 1nkt_A 437 LIYKTEEA-KYIAVVDDVAERY---AKGQPVLIGTTSVERSEYLSRQFTKRR-IPHNVLNAKYHEQEATIIAVAGRRG-- 509 (922)
T ss_dssp EEESCHHH-HHHHHHHHHHHHH---HTTCCEEEEESCHHHHHHHHHHHHHTT-CCCEEECSSCHHHHHHHHHTTTSTT--
T ss_pred EEEeCHHH-HHHHHHHHHHHHH---hcCCcEEEEECCHHHHHHHHHHHHHCC-CCEEEecCChhHHHHHHHHhcCCCC--
Confidence 45565555 9999999886622 234689999999999999999999999 8999999999888877777777764
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCC-----------------------------------
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA----------------------------------- 150 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v----------------------------------- 150 (187)
.|+||||+ ++||+|++.+
T Consensus 510 -----------------------~VtIATnm----AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (922)
T 1nkt_A 510 -----------------------GVTVATNM----AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPI 562 (922)
T ss_dssp -----------------------CEEEEETT----CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHH
T ss_pred -----------------------eEEEecch----hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 58999999 9999999976
Q ss_pred -----------------CEEEEecCCCChhHHHHhhhhccCC--CCeEEEEEEe
Q 029806 151 -----------------RVLINYELPTKKETYIRRMTTCLAA--GTSFSDIILL 185 (187)
Q Consensus 151 -----------------~~VI~yd~P~~~~~y~~R~GR~~r~--~g~~i~~v~~ 185 (187)
.||||||+|.+.+.|.||+||+||. +|.++.|+++
T Consensus 563 ~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSl 616 (922)
T 1nkt_A 563 VKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSL 616 (922)
T ss_dssp HHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEET
T ss_pred HHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEech
Confidence 4999999999999999999999766 4777777763
No 51
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.1e-18 Score=165.82 Aligned_cols=106 Identities=18% Similarity=0.185 Sum_probs=90.8
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCce---------------------------------------EEEEeccCCHH
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADIS---------------------------------------FSSLHSDLAET 91 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~---------------------------------------~~~lhg~~~~~ 91 (187)
....++||||++++.++.++..|...+ +. +..+||+|++.
T Consensus 439 ~~~~~vIVF~~sr~~~e~la~~L~~~~-~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~ 517 (1108)
T 3l9o_A 439 KKYNPVIVFSFSKRDCEELALKMSKLD-FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPI 517 (1108)
T ss_dssp TTCCCEEEEESCHHHHHHHHHHTCSHH-HHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHH
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHH
Confidence 456799999999999999999986643 12 78999999999
Q ss_pred HHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCC--------CChh
Q 029806 92 ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP--------TKKE 163 (187)
Q Consensus 92 eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P--------~~~~ 163 (187)
+|..+++.|++|. ++|||||++ +++|||+|++++||+|+.| .++.
T Consensus 518 ~R~~v~~~F~~G~-----------------------ikVLVAT~v----la~GIDiP~v~~VI~~~~~~d~~~~r~iS~~ 570 (1108)
T 3l9o_A 518 LKEVIEILFQEGF-----------------------LKVLFATET----FSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG 570 (1108)
T ss_dssp HHHHHHHHHHHTC-----------------------CCEEEEESC----CCSCCCC--CEEEESCSEEESSSCEEECCHH
T ss_pred HHHHHHHHHhCCC-----------------------CeEEEECcH----HhcCCCCCCceEEEecCcccCccccccCCHH
Confidence 9999999999994 999999999 9999999999999987763 4777
Q ss_pred HHHHhhhhccCCC--CeEEEEEE
Q 029806 164 TYIRRMTTCLAAG--TSFSDIIL 184 (187)
Q Consensus 164 ~y~~R~GR~~r~~--g~~i~~v~ 184 (187)
+|+||+||+||.+ +.+++|++
T Consensus 571 eyiQr~GRAGR~G~d~~G~~ill 593 (1108)
T 3l9o_A 571 EYIQMSGRAGRRGLDDRGIVIMM 593 (1108)
T ss_dssp HHHHHHHHSCCSSSCSSEEEEEE
T ss_pred HHHHhhcccCCCCCCCceEEEEE
Confidence 8999999999887 67777765
No 52
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.75 E-value=2.2e-18 Score=166.22 Aligned_cols=130 Identities=13% Similarity=0.130 Sum_probs=105.8
Q ss_pred CCCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc--CCceEEEEeccCCHHHHHHH
Q 029806 19 FSQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 19 ~~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~--~~i~~~~lhg~~~~~eR~~~ 96 (187)
...+..++.... +......+++.+ ..+++++|||++++.++.+++.|.+. + +.+..+||+|+.++|.++
T Consensus 786 r~~i~~~~~~~~----~~~i~~~il~~l----~~g~qvlvf~~~v~~~~~l~~~L~~~~p~-~~v~~lhg~~~~~eR~~i 856 (1151)
T 2eyq_A 786 RLAVKTFVREYD----SMVVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPE-ARIAIGHGQMRERELERV 856 (1151)
T ss_dssp CBCEEEEEEECC----HHHHHHHHHHHH----TTTCEEEEECCCSSCHHHHHHHHHHHCTT-SCEEECCSSCCHHHHHHH
T ss_pred ccccEEEEecCC----HHHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCC-CeEEEEeCCCCHHHHHHH
Confidence 344555444332 333344444442 23689999999999999999999876 5 689999999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecC-CCChhHHHHhhhhccCC
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-PTKKETYIRRMTTCLAA 175 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~-P~~~~~y~~R~GR~~r~ 175 (187)
+++|++|+ .+|||||++ +++|+|+|++++||+++. +.+...|.||+||+||.
T Consensus 857 l~~F~~g~-----------------------~~VLVaT~v----~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~ 909 (1151)
T 2eyq_A 857 MNDFHHQR-----------------------FNVLVCTTI----IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 909 (1151)
T ss_dssp HHHHHTTS-----------------------CCEEEESST----TGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBT
T ss_pred HHHHHcCC-----------------------CcEEEECCc----ceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcC
Confidence 99999984 999999999 999999999999999998 56899999999999988
Q ss_pred CCeEEEEEE
Q 029806 176 GTSFSDIIL 184 (187)
Q Consensus 176 ~g~~i~~v~ 184 (187)
+..+++++.
T Consensus 910 g~~g~~~ll 918 (1151)
T 2eyq_A 910 HHQAYAWLL 918 (1151)
T ss_dssp TBCEEEEEE
T ss_pred CCceEEEEE
Confidence 766666554
No 53
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.75 E-value=2.2e-18 Score=158.41 Aligned_cols=98 Identities=8% Similarity=-0.022 Sum_probs=88.9
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
.+++||||++++.++++++.|.+.+ +++..+||+ +|..++++|++|+ .+|||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g-~~v~~lHg~----eR~~v~~~F~~g~-----------------------~~VLV 461 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAG-KRVIQLNRK----SYDTEYPKCKNGD-----------------------WDFVI 461 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTT-CCEEEECSS----SHHHHGGGGGTCC-----------------------CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC-CeEEEeChH----HHHHHHHHHHCCC-----------------------ceEEE
Confidence 5799999999999999999999988 699999993 8999999999984 99999
Q ss_pred EecCCCCcCcCCCCCCCCCEEEE--------------------ecCCCChhHHHHhhhhccCC---CCeEEEEE
Q 029806 133 VTDACLPLLSSGESAISARVLIN--------------------YELPTKKETYIRRMTTCLAA---GTSFSDII 183 (187)
Q Consensus 133 ~Td~~~~~~~rGlDi~~v~~VI~--------------------yd~P~~~~~y~~R~GR~~r~---~g~~i~~v 183 (187)
||++ +++|+|+| +++||| ||+|.+.++|+||+||+||. .|.+++|+
T Consensus 462 aTdv----~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 462 TTDI----SEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp ECGG----GGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred ECch----hhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 9999 99999999 999998 67999999999999999877 45666553
No 54
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.75 E-value=5e-18 Score=161.97 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=93.0
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCc--------------------------------------eEEEEeccCCHHHH
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADI--------------------------------------SFSSLHSDLAETER 93 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i--------------------------------------~~~~lhg~~~~~eR 93 (187)
...++||||++++.++.++..|...+.. .+..+||+|+..+|
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR 421 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 421 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHH
Confidence 3469999999999999999999775420 17889999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEE----ecC----CCChhHH
Q 029806 94 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YEL----PTKKETY 165 (187)
Q Consensus 94 ~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~----yd~----P~~~~~y 165 (187)
..+++.|++|. +++||||++ +++|+|+|++++||+ ||. |.++.+|
T Consensus 422 ~~ve~~F~~G~-----------------------ikVLVAT~~----la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y 474 (1010)
T 2xgj_A 422 EVIEILFQEGF-----------------------LKVLFATET----FSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEY 474 (1010)
T ss_dssp HHHHHHHHTTC-----------------------CSEEEEEGG----GGGSTTCCBSEEEESCSEEECSSCEEECCHHHH
T ss_pred HHHHHHHhcCC-----------------------CcEEEEehH----hhccCCCCCceEEEeCCcccCCcCCccCCHHHH
Confidence 99999999984 999999999 999999999999999 999 8999999
Q ss_pred HHhhhhccCCC----CeEEEEE
Q 029806 166 IRRMTTCLAAG----TSFSDII 183 (187)
Q Consensus 166 ~~R~GR~~r~~----g~~i~~v 183 (187)
+||+||+||.+ |.++.++
T Consensus 475 ~Qr~GRAGR~G~d~~G~vi~l~ 496 (1010)
T 2xgj_A 475 IQMSGRAGRRGLDDRGIVIMMI 496 (1010)
T ss_dssp HHHHTTBCCTTTCSSEEEEEEE
T ss_pred hHhhhhcccCCCCCceEEEEEE
Confidence 99999998886 5555554
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.74 E-value=1.4e-17 Score=146.63 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=97.2
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEeccCCHHHHHHHHHHHhcccccccccc
Q 029806 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 111 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~ 111 (187)
..|+..+.++++... ..+.++||||+++..++.+...|... | +.+..+||+|+.++|.+++++|+++.
T Consensus 324 s~K~~~l~~~l~~~~---~~~~k~lvF~~~~~~~~~l~~~l~~~~~-~~~~~~~g~~~~~~R~~~~~~F~~~~------- 392 (500)
T 1z63_A 324 SGKMIRTMEIIEEAL---DEGDKIAIFTQFVDMGKIIRNIIEKELN-TEVPFLYGELSKKERDDIISKFQNNP------- 392 (500)
T ss_dssp CHHHHHHHHHHHHHH---TTTCCEEEECSCHHHHHHHHHHHHHHHT-CCCCEEETTSCHHHHHHHHHHHHHCT-------
T ss_pred chhHHHHHHHHHHHH---ccCCcEEEEEehHHHHHHHHHHHHHhhC-CCeEEEECCCCHHHHHHHHHHhcCCC-------
Confidence 348999999998743 34689999999999999999999875 7 68999999999999999999999973
Q ss_pred cccCCCCCcCCCCCCce-eEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 112 TEQSGDESETGKDEHKS-HMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 112 ~~~~~~~~~~~~~~~~~-~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
.. .+|++|++ +++|+|++.+++||+||+|+++..|.||+||++|.+
T Consensus 393 ---------------~~~vil~st~~----~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~G 439 (500)
T 1z63_A 393 ---------------SVKFIVLSVKA----GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIG 439 (500)
T ss_dssp ---------------TCCCCEEECCC----C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTT
T ss_pred ---------------CCCEEEEeccc----ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcC
Confidence 23 48999999 999999999999999999999999999999996553
No 56
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.74 E-value=5.9e-18 Score=152.32 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=85.9
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCC-------ceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLAD-------ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGK 123 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~-------i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~ 123 (187)
.+..++||||++++.++.+++.|.+.+. -.+..+||++++ +|.+++++|++++.
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~------------------ 497 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELET------------------ 497 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTC------------------
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCC------------------
Confidence 4568999999999999999999976531 137889999864 79999999999740
Q ss_pred CCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 124 DEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 124 ~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
....||+||++ +++|+|+|++++||+|++|.+...|+||+||++|.+
T Consensus 498 --~~~~ilvtt~~----l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 498 --STPVILTTSQL----LTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp --CCCCEEEESST----TTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCB
T ss_pred --CCCEEEEECCh----hhcCccchheeEEEEEecCCChHHHHHHHhhhcccC
Confidence 01238899999 999999999999999999999999999999998853
No 57
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.74 E-value=1.5e-17 Score=152.92 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=87.4
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCC-----------------------------------ceEEEEeccCCHHHHHHH
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLAD-----------------------------------ISFSSLHSDLAETERTLI 96 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~-----------------------------------i~~~~lhg~~~~~eR~~~ 96 (187)
+++++||||++++.++.++..|..... ..+..+||+|+.++|..+
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 358999999999999999999975420 138899999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEE----ec-------CCCChhHH
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE-------LPTKKETY 165 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~----yd-------~P~~~~~y 165 (187)
++.|++|. .+|||||++ +++|+|+|++++||+ || .|.+..+|
T Consensus 331 ~~~f~~g~-----------------------~~vlvaT~~----l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~ 383 (715)
T 2va8_A 331 EEGFRQRK-----------------------IKVIVATPT----LAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEY 383 (715)
T ss_dssp HHHHHTTC-----------------------SCEEEECGG----GGGSSCCCBSEEEECCC--------------CHHHH
T ss_pred HHHHHcCC-----------------------CeEEEEChH----HhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHH
Confidence 99999984 999999999 999999999999999 99 89999999
Q ss_pred HHhhhhccCCC--CeEEEEE
Q 029806 166 IRRMTTCLAAG--TSFSDII 183 (187)
Q Consensus 166 ~~R~GR~~r~~--g~~i~~v 183 (187)
.||+||+||.+ ..|.+++
T Consensus 384 ~Qr~GRaGR~g~~~~G~~~~ 403 (715)
T 2va8_A 384 KQMSGRAGRPGFDQIGESIV 403 (715)
T ss_dssp HHHHTTBCCTTTCSCEEEEE
T ss_pred HHHhhhcCCCCCCCCceEEE
Confidence 99999998865 3444444
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.73 E-value=1.2e-17 Score=147.33 Aligned_cols=111 Identities=10% Similarity=0.075 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccccc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 114 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~ 114 (187)
|...+.+++..... ....++||||+ .+.++.+++.|.+.+ ..+..+||+|+.++|.+++++|++|+
T Consensus 332 ~~~~l~~~l~~~~~--~~~~~~ivf~~-~~~~~~l~~~L~~~~-~~v~~~~g~~~~~~r~~i~~~f~~g~---------- 397 (510)
T 2oca_A 332 RNKWIAKLAIKLAQ--KDENAFVMFKH-VSHGKAIFDLIKNEY-DKVYYVSGEVDTETRNIMKTLAENGK---------- 397 (510)
T ss_dssp HHHHHHHHHHHHHT--TTCEEEEEESS-HHHHHHHHHHHHTTC-SSEEEESSSTTHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHh--cCCCeEEEEec-HHHHHHHHHHHHHcC-CCeEEEECCCCHHHHHHHHHHHhCCC----------
Confidence 55667777766332 34567777777 888999999999987 49999999999999999999999984
Q ss_pred CCCCCcCCCCCCceeEEEEe-cCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 115 SGDESETGKDEHKSHMIVVT-DACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 115 ~~~~~~~~~~~~~~~iLv~T-d~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
.++|||| ++ +++|+|+|++++||+++.|.++..|+||+||+||.+
T Consensus 398 -------------~~vLv~T~~~----~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g 443 (510)
T 2oca_A 398 -------------GIIIVASYGV----FSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKH 443 (510)
T ss_dssp -------------SCEEEEEHHH----HHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTT
T ss_pred -------------CCEEEEEcCh----hhcccccccCcEEEEeCCCCCHHHHHHHHhcccccC
Confidence 8999999 99 999999999999999999999999999999997764
No 59
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.73 E-value=1.6e-17 Score=152.62 Aligned_cols=96 Identities=17% Similarity=0.247 Sum_probs=88.2
Q ss_pred CcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEE
Q 029806 54 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV 133 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~ 133 (187)
...||||++++.++++++.|.+.+ +.+..+||+|++++|..+++.|+.++ ++.+||||
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g-~~v~~lHG~L~~~~R~~~~~~F~~~~---------------------g~~~VLVA 378 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRG-LESAVIYGSLPPGTKLAQAKKFNDPN---------------------DPCKILVA 378 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHCTT---------------------SSCCEEEE
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcC-CCeeeeeccCCHHHHHHHHHHHHccC---------------------CCeEEEEe
Confidence 455899999999999999999988 69999999999999999999999821 15999999
Q ss_pred ecCCCCcCcCCCCCCCCCEEEEecC--------------CCChhHHHHhhhhccCCC
Q 029806 134 TDACLPLLSSGESAISARVLINYEL--------------PTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 134 Td~~~~~~~rGlDi~~v~~VI~yd~--------------P~~~~~y~~R~GR~~r~~ 176 (187)
|++ +++|+|+ +|++||++++ |.+..+|+||+||+||.+
T Consensus 379 Tdi----~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 379 TDA----IGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp CGG----GGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTT
T ss_pred CcH----HHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCC
Confidence 999 9999999 9999999999 889999999999998886
No 60
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.73 E-value=1.6e-17 Score=158.32 Aligned_cols=127 Identities=16% Similarity=0.182 Sum_probs=102.4
Q ss_pred EEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCc-------------------------
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI------------------------- 79 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i------------------------- 79 (187)
++..+.... ++..|.+.+.. ....++||||++++.++.++..|...+..
T Consensus 314 ~~~~~~~~~-~~~~li~~l~~-----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 387 (997)
T 4a4z_A 314 FTQDGPSKK-TWPEIVNYLRK-----RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRD 387 (997)
T ss_dssp ---CCCCTT-HHHHHHHHHHH-----TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHT
T ss_pred ccccccchh-HHHHHHHHHHh-----CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhc
Confidence 343444444 78888888877 45689999999999999999999775521
Q ss_pred -------------eEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCC
Q 029806 80 -------------SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGES 146 (187)
Q Consensus 80 -------------~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlD 146 (187)
.+..+||+|++.+|..+++.|++|. .+|||||++ +++|||
T Consensus 388 l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~-----------------------~kVLvAT~~----~a~GID 440 (997)
T 4a4z_A 388 LPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF-----------------------IKVLFATET----FAMGLN 440 (997)
T ss_dssp CHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC-----------------------CSEEEECTH----HHHSCC
T ss_pred chhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCC-----------------------CcEEEEchH----hhCCCC
Confidence 3789999999999999999999995 999999999 999999
Q ss_pred CCCCCEEEEecCCC---------ChhHHHHhhhhccCCC--CeEEEEEEe
Q 029806 147 AISARVLINYELPT---------KKETYIRRMTTCLAAG--TSFSDIILL 185 (187)
Q Consensus 147 i~~v~~VI~yd~P~---------~~~~y~~R~GR~~r~~--g~~i~~v~~ 185 (187)
+|+ ..||++++|. +..+|+||+||+||.+ +.+.+++..
T Consensus 441 iP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 441 LPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp CCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 999 5555555554 9999999999999875 667666653
No 61
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.72 E-value=9e-18 Score=146.63 Aligned_cols=91 Identities=8% Similarity=-0.023 Sum_probs=83.3
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
.+++||||++++.++.+++.|.+.+ +.+..+||+ +|.+++++|++|+ .++||
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~-~~v~~lhg~----~r~~~~~~f~~g~-----------------------~~vLV 222 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAG-KKVLYLNRK----TFESEYPKCKSEK-----------------------WDFVI 222 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTT-CCEEEESTT----THHHHTTHHHHSC-----------------------CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-CeEEEeCCc----cHHHHHHhhcCCC-----------------------CeEEE
Confidence 4689999999999999999999987 699999997 5788999999984 99999
Q ss_pred EecCCCCcCcCCCCCCCCCE-----------------EEEecCCCChhHHHHhhhhccCCC
Q 029806 133 VTDACLPLLSSGESAISARV-----------------LINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 133 ~Td~~~~~~~rGlDi~~v~~-----------------VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
||++ +++|+|+| +.+ ||+|+.|.+.++|+||+||+||.+
T Consensus 223 aT~v----~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 278 (431)
T 2v6i_A 223 TTDI----SEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNP 278 (431)
T ss_dssp ECGG----GGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred ECch----HHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCC
Confidence 9999 99999999 655 688999999999999999998875
No 62
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.72 E-value=2.1e-17 Score=152.23 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC-----------------Cc---------------eEE
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA-----------------DI---------------SFS 82 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~-----------------~i---------------~~~ 82 (187)
+...+.++++. ++++||||++++.++.++..|.+.. .+ .+.
T Consensus 226 ~~~~~~~~~~~-------~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~ 298 (720)
T 2zj8_A 226 WEELVYDAIRK-------KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298 (720)
T ss_dssp TTHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHhC-------CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCee
Confidence 55666665543 5899999999999999999886531 01 389
Q ss_pred EEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEE----ec-
Q 029806 83 SLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE- 157 (187)
Q Consensus 83 ~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~----yd- 157 (187)
.+||+|+.++|..+++.|++|. .+|||||++ +++|+|+|++++||+ ||
T Consensus 299 ~~h~~l~~~~R~~v~~~f~~g~-----------------------~~vlvaT~~----l~~Gvdip~~~~VI~~~~~yd~ 351 (720)
T 2zj8_A 299 FHHAGLGRDERVLVEENFRKGI-----------------------IKAVVATPT----LSAGINTPAFRVIIRDIWRYSD 351 (720)
T ss_dssp EECTTSCHHHHHHHHHHHHTTS-----------------------SCEEEECST----TGGGCCCCBSEEEECCSEECCS
T ss_pred eecCCCCHHHHHHHHHHHHCCC-----------------------CeEEEECcH----hhccCCCCceEEEEcCCeeecC
Confidence 9999999999999999999984 999999999 999999999999999 88
Q ss_pred ---CCCChhHHHHhhhhccCCC--CeEEEEE
Q 029806 158 ---LPTKKETYIRRMTTCLAAG--TSFSDII 183 (187)
Q Consensus 158 ---~P~~~~~y~~R~GR~~r~~--g~~i~~v 183 (187)
.|.+..+|.||+||+||.+ ..+.+++
T Consensus 352 ~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 382 (720)
T 2zj8_A 352 FGMERIPIIEVHQMLGRAGRPKYDEVGEGII 382 (720)
T ss_dssp SSCEECCHHHHHHHHTTBCCTTTCSEEEEEE
T ss_pred CCCccCCHHHHHHHHhhcCCCCCCCCceEEE
Confidence 6999999999999999865 3555444
No 63
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.72 E-value=6.8e-18 Score=154.56 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=81.5
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEE
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 131 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 131 (187)
..+++||||++++.++++++.|.+.+ +.+..+||+|++++ |+++ ..+||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g-~~v~~lHG~l~q~e-------r~~~-----------------------~~~VL 443 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLG-INAVAYYRGLDVSV-------IPTI-----------------------GDVVV 443 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECTTSCGGG-------SCSS-----------------------SCEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCC-CcEEEecCCCCHHH-------HHhC-----------------------CCcEE
Confidence 45899999999999999999999988 69999999999875 3444 26999
Q ss_pred EEecCCCCcCcCCCCCCCCCEEE----------Eec-----------CCCChhHHHHhhhhccCCCCeEE
Q 029806 132 VVTDACLPLLSSGESAISARVLI----------NYE-----------LPTKKETYIRRMTTCLAAGTSFS 180 (187)
Q Consensus 132 v~Td~~~~~~~rGlDi~~v~~VI----------~yd-----------~P~~~~~y~~R~GR~~r~~g~~i 180 (187)
||||+ ++||||++ +++|| ||| +|.+.++|+||+||+|| +..+.
T Consensus 444 VATdV----aerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 444 VATDA----LMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp EECTT----HHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred EECCh----HHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 99999 99999987 99988 788 99999999999999999 65555
No 64
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.72 E-value=2.3e-17 Score=151.55 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc------------------------------CCceEEEE
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------------------------ADISFSSL 84 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~------------------------------~~i~~~~l 84 (187)
+...+.+.++. ++++||||++++.++.++..|... + ..+..+
T Consensus 231 ~~~~~~~~~~~-------~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~v~~~ 302 (702)
T 2p6r_A 231 FEELVEECVAE-------NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVR-KGAAFH 302 (702)
T ss_dssp HHHHHHHHHHT-------TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHH-TTCCEE
T ss_pred HHHHHHHHHhc-------CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHh-cCeEEe
Confidence 44555555432 589999999999999999988642 1 147789
Q ss_pred eccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEE----ec---
Q 029806 85 HSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE--- 157 (187)
Q Consensus 85 hg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~----yd--- 157 (187)
||+|+.++|..+++.|++|. .+|||||++ +++|+|+|++++||+ ||
T Consensus 303 h~~l~~~~R~~v~~~f~~g~-----------------------~~vlvaT~~----l~~Gidip~~~~VI~~~~~yd~~~ 355 (702)
T 2p6r_A 303 HAGLLNGQRRVVEDAFRRGN-----------------------IKVVVATPT----LAAGVNLPARRVIVRSLYRFDGYS 355 (702)
T ss_dssp CTTSCHHHHHHHHHHHHTTS-----------------------CCEEEECST----TTSSSCCCBSEEEECCSEEESSSE
T ss_pred cCCCCHHHHHHHHHHHHCCC-----------------------CeEEEECcH----HhccCCCCceEEEEcCceeeCCCC
Confidence 99999999999999999984 999999999 999999999999999 77
Q ss_pred CCCChhHHHHhhhhccCCC--CeEEEEE
Q 029806 158 LPTKKETYIRRMTTCLAAG--TSFSDII 183 (187)
Q Consensus 158 ~P~~~~~y~~R~GR~~r~~--g~~i~~v 183 (187)
.|.+..+|.||+||+||.+ ..|.+++
T Consensus 356 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 383 (702)
T 2p6r_A 356 KRIKVSEYKQMAGRAGRPGMDERGEAII 383 (702)
T ss_dssp EECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CcCCHHHHHHHhhhcCCCCCCCCceEEE
Confidence 7999999999999998865 3444443
No 65
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.71 E-value=7.5e-17 Score=147.32 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=102.3
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccc
Q 029806 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~ 112 (187)
..|+..|..+++.+.. .++.++||||+++..++.+...|...| +.+..+||+|+.++|.+++++|+++.
T Consensus 398 s~K~~~l~~ll~~~~~--~~~~k~lIFs~~~~~~~~l~~~l~~~g-~~~~~l~G~~~~~~R~~~i~~F~~~~-------- 466 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRT--TTSDKVVLVSNYTQTLDLFEKLCRNRR-YLYVRLDGTMSIKKRAKIVERFNNPS-------- 466 (644)
T ss_dssp SHHHHHHHHHHHHHHH--HCCCEEEEEESCHHHHHHHHHHHHHHT-CCEEEECSSCCHHHHHHHHHHHHSTT--------
T ss_pred ChHHHHHHHHHHHHhh--cCCCEEEEEEccHHHHHHHHHHHHHCC-CCEEEEeCCCCHHHHHHHHHHhcCCC--------
Confidence 3488888888876432 346899999999999999999999888 69999999999999999999999974
Q ss_pred ccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCC
Q 029806 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 176 (187)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~ 176 (187)
.....+|++|++ +++|+|++.+++||+||+|+++..|.||+||+.|.+
T Consensus 467 ------------~~~~v~L~st~a----~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~G 514 (644)
T 1z3i_X 467 ------------SPEFIFMLSSKA----GGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 514 (644)
T ss_dssp ------------CCCCEEEEEGGG----SCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTT
T ss_pred ------------CCcEEEEEeccc----ccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcC
Confidence 011358999999 999999999999999999999999999999995554
No 66
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.68 E-value=5.4e-18 Score=157.93 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCCh--------hhHHHHHHHHHc---cCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSR--------DELDAVCSAVSN---LADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~--------~~~~~l~~~L~~---~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
+...+.+.+.... ..+.+++|||+.+ ..++.+++.|.+ .+ +.+..+||+|+.++|..++++|++|
T Consensus 563 ~~~~l~~~i~~~l---~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~-~~v~~lHG~m~~~eR~~v~~~F~~G 638 (780)
T 1gm5_A 563 RVNEVYEFVRQEV---MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPE-FKLGLMHGRLSQEEKDRVMLEFAEG 638 (780)
T ss_dssp THHHHHHHHHHHT---TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC----CBCCCCSSSCCSCSHHHHHHHTTT
T ss_pred hHHHHHHHHHHHH---hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCC-CcEEEEeCCCCHHHHHHHHHHHHCC
Confidence 3444555554412 3468999999965 457888888877 34 6899999999999999999999998
Q ss_pred cccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCC-ChhHHHHhhhhccCCCCeEEEE
Q 029806 104 AMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAGTSFSDI 182 (187)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~-~~~~y~~R~GR~~r~~g~~i~~ 182 (187)
+ .+|||||++ +++|+|+|++++||+||.|. +...|.||+||+||.+..+.++
T Consensus 639 ~-----------------------~~ILVaT~v----ie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~i 691 (780)
T 1gm5_A 639 R-----------------------YDILVSTTV----IEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCF 691 (780)
T ss_dssp S-----------------------SSBCCCSSC----CCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEE
T ss_pred C-----------------------CeEEEECCC----CCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEE
Confidence 4 999999999 99999999999999999997 6888999999998865444443
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.6e-16 Score=145.86 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccc
Q 029806 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~ 112 (187)
..|+..|.+++..+. ..+.++||||+...+++.|...|...| +.+..+||+++..+|..++++|+.+.
T Consensus 555 s~K~~~L~~lL~~~~---~~g~kvLIFsq~~~~ld~L~~~L~~~g-~~~~~i~G~~~~~eR~~~i~~F~~~~-------- 622 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLK---KDGHRVLIFSQMVRMLDILGDYLSIKG-INFQRLDGTVPSAQRRISIDHFNSPD-------- 622 (800)
T ss_dssp CHHHHHHHHHHHHHT---TTTCCEEEEESCHHHHHHHHHHHHHHT-CCCEEESTTSCHHHHHHHHHTTSSTT--------
T ss_pred ChHHHHHHHHHHHHh---hCCCeEEEEechHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHhhCCC--------
Confidence 349999999998843 346799999999999999999999888 79999999999999999999999863
Q ss_pred ccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCC
Q 029806 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 175 (187)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~ 175 (187)
.+...+|++|++ ++.|||++.+++||+||+|+++..+.||+||+.|.
T Consensus 623 ------------~~~~v~LlSt~a----gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 669 (800)
T 3mwy_W 623 ------------SNDFVFLLSTRA----GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRI 669 (800)
T ss_dssp ------------CSCCCEEEEHHH----HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCS
T ss_pred ------------CCceEEEEeccc----ccCCCCccccceEEEecCCCChhhHHHHHHHHHhc
Confidence 112469999999 99999999999999999999999999999999554
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.46 E-value=1.2e-13 Score=137.53 Aligned_cols=137 Identities=17% Similarity=0.239 Sum_probs=100.5
Q ss_pred CCCceEEEEccCcc--hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----C----------------
Q 029806 20 SQPRHFYVAVDRLQ--FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----A---------------- 77 (187)
Q Consensus 20 ~~i~~~~~~~~~~~--~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~---------------- 77 (187)
-.+++.++-+.... .+...+.+.+.........++++||||++++.++.++..|.+. +
T Consensus 282 vpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1724)
T 4f92_B 282 VPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVL 361 (1724)
T ss_dssp SCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHH
T ss_pred CccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHH
Confidence 34666655544332 1333444444332322345679999999999998888877531 0
Q ss_pred ----------------CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcC
Q 029806 78 ----------------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLL 141 (187)
Q Consensus 78 ----------------~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~ 141 (187)
..-+..+||+|+.++|..+.+.|++|. +++||||+. +
T Consensus 362 ~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~-----------------------i~vlvaTsT----L 414 (1724)
T 4f92_B 362 RTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKH-----------------------IQVLVSTAT----L 414 (1724)
T ss_dssp HHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTC-----------------------CCEEEECHH----H
T ss_pred HhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCC-----------------------CeEEEEcch----h
Confidence 012788999999999999999999994 999999999 9
Q ss_pred cCCCCCCCCCEEEE----ecC------CCChhHHHHhhhhccCCC--CeEEEEE
Q 029806 142 SSGESAISARVLIN----YEL------PTKKETYIRRMTTCLAAG--TSFSDII 183 (187)
Q Consensus 142 ~rGlDi~~v~~VI~----yd~------P~~~~~y~~R~GR~~r~~--g~~i~~v 183 (187)
++|+|+|.+++||. ||. |-++.+|.||+||+||.+ ..|..++
T Consensus 415 a~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 415 AWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp HHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred HhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 99999999999995 553 568999999999999875 3444443
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.45 E-value=3.1e-13 Score=134.62 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=87.2
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHcc----------------------------------CCceEEEEeccCCHHHHHHH
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNL----------------------------------ADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~----------------------------------~~i~~~~lhg~~~~~eR~~~ 96 (187)
.+.+++||||++++.++.++..|... . ..+..+|++|+.++|..+
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~-~GIa~hHagL~~~~R~~V 1231 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLL-NGVGYLHEGLSPMERRLV 1231 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHH-TTEEEECTTSCHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHh-CCEEEECCCCCHHHHHHH
Confidence 56789999999999998887665321 1 137899999999999999
Q ss_pred HHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEE----e------cCCCChhHHH
Q 029806 97 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----Y------ELPTKKETYI 166 (187)
Q Consensus 97 l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~----y------d~P~~~~~y~ 166 (187)
.+.|++|. +++||||+. +++|+|+|...+||. | ..|.+..+|+
T Consensus 1232 E~lF~~G~-----------------------i~VLvaT~t----lA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~ 1284 (1724)
T 4f92_B 1232 EQLFSSGA-----------------------IQVVVASRS----LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVL 1284 (1724)
T ss_dssp HHHHHHTS-----------------------BCEEEEEGG----GSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHH
T ss_pred HHHHHCCC-----------------------CeEEEEChH----HHcCCCCCccEEEEecCccccCcccccCCCCHHHHH
Confidence 99999994 999999999 999999999999982 3 3577899999
Q ss_pred HhhhhccCCC--CeEEEEE
Q 029806 167 RRMTTCLAAG--TSFSDII 183 (187)
Q Consensus 167 ~R~GR~~r~~--g~~i~~v 183 (187)
||+||+||.+ +.|.+++
T Consensus 1285 Qm~GRAGR~g~d~~G~avl 1303 (1724)
T 4f92_B 1285 QMVGHANRPLQDDEGRCVI 1303 (1724)
T ss_dssp HHHTTBCCTTTCSCEEEEE
T ss_pred HhhccccCCCCCCceEEEE
Confidence 9999998875 3444443
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.30 E-value=6.4e-12 Score=120.16 Aligned_cols=103 Identities=9% Similarity=0.106 Sum_probs=82.8
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccC-----------CceE-EEEecc----------C----------CH----------
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLA-----------DISF-SSLHSD----------L----------AE---------- 90 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~-----------~i~~-~~lhg~----------~----------~~---------- 90 (187)
+.++||||+++..+..+++.|.+.+ .+++ ..+||+ + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4689999999999999999997643 1345 455542 2 22
Q ss_pred -------------------HHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCC
Q 029806 91 -------------------TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR 151 (187)
Q Consensus 91 -------------------~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~ 151 (187)
.+|..++++|++++ .++||+|+. +.+|+|+|.+
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~-----------------------i~ILIvvd~----lltGfDiP~l- 668 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQD-----------------------IDLLIVVGM----FLTGFDAPTL- 668 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTS-----------------------SSEEEESST----TSSSCCCTTE-
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCC-----------------------CeEEEEcch----HHhCcCcccc-
Confidence 14888999999984 999999999 9999999999
Q ss_pred EEEEecCCCChhHHHHhhhhccCCC------CeEEEEE
Q 029806 152 VLINYELPTKKETYIRRMTTCLAAG------TSFSDII 183 (187)
Q Consensus 152 ~VI~yd~P~~~~~y~~R~GR~~r~~------g~~i~~v 183 (187)
+++++|.|.+...|+||+||++|.. |.+++|+
T Consensus 669 ~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 669 NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 7889999999999999999996653 5555554
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.45 E-value=4.5e-07 Score=81.05 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCC
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 116 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~ 116 (187)
+.+.+.+..+.. ...+.++||++|...++.+++.|.. .....++.. .+|.+++++|+.+
T Consensus 370 ~~~~~~l~~~~~--~~~g~~lvff~S~~~~~~v~~~l~~----~~~~~q~~~--~~~~~~l~~f~~~------------- 428 (540)
T 2vl7_A 370 PIYSILLKRIYE--NSSKSVLVFFPSYEMLESVRIHLSG----IPVIEENKK--TRHEEVLELMKTG------------- 428 (540)
T ss_dssp HHHHHHHHHHHH--TCSSEEEEEESCHHHHHHHHTTCTT----SCEEESTTT--CCHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHHH--hCCCCEEEEeCCHHHHHHHHHHhcc----CceEecCCC--CcHHHHHHHHhcC-------------
Confidence 445555555443 3457899999999999999988854 234556654 5788999999885
Q ss_pred CCCcCCCCCCceeEEE--EecCCCCcCcCCCCCCC----CCEEEEecCCC
Q 029806 117 DESETGKDEHKSHMIV--VTDACLPLLSSGESAIS----ARVLINYELPT 160 (187)
Q Consensus 117 ~~~~~~~~~~~~~iLv--~Td~~~~~~~rGlDi~~----v~~VI~yd~P~ 160 (187)
..+|+ +|+. +++|||+|+ +++||++++|-
T Consensus 429 -----------~~il~~V~~~~----~~EGiD~~~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 429 -----------KYLVMLVMRAK----ESEGVEFREKENLFESLVLAGLPY 463 (540)
T ss_dssp -----------CCEEEEEC-------------------CEEEEEEESCCC
T ss_pred -----------CeEEEEEecCc----eecceecCCCcccccEEEEECCCC
Confidence 34566 8899 999999998 89999999983
No 72
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.68 E-value=0.00065 Score=57.19 Aligned_cols=104 Identities=10% Similarity=0.098 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccccccccccc
Q 029806 33 QFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 112 (187)
Q Consensus 33 ~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~ 112 (187)
..|+..|.+++..+. ..+.+++||++..++.+-+..++..++ +....+.|....++++ . .+.
T Consensus 108 SGKf~~L~~LL~~l~---~~~~kVLIfsq~t~~LDilE~~l~~~~-~~y~RlDG~~~~~~~k--~---~~~--------- 169 (328)
T 3hgt_A 108 SGKFSVLRDLINLVQ---EYETETAIVCRPGRTMDLLEALLLGNK-VHIKRYDGHSIKSAAA--A---NDF--------- 169 (328)
T ss_dssp CHHHHHHHHHHHHHT---TSCEEEEEEECSTHHHHHHHHHHTTSS-CEEEESSSCCC------------CC---------
T ss_pred CccHHHHHHHHHHHH---hCCCEEEEEECChhHHHHHHHHHhcCC-CceEeCCCCchhhhhh--c---ccC---------
Confidence 349999999999854 356899999999999999999999988 5999999985443211 0 111
Q ss_pred ccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCC-----CCCCCEEEEecCCCChhH-HHHhhhhc
Q 029806 113 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGES-----AISARVLINYELPTKKET-YIRRMTTC 172 (187)
Q Consensus 113 ~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlD-----i~~v~~VI~yd~P~~~~~-y~~R~GR~ 172 (187)
+..+.+.|.. ..-|++ ...++.||-||.-+++.. .+|.+-|+
T Consensus 170 --------------~~~i~Lltsa----g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~ 217 (328)
T 3hgt_A 170 --------------SCTVHLFSSE----GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQY 217 (328)
T ss_dssp --------------SEEEEEEESS----CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCC
T ss_pred --------------CceEEEEECC----CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHH
Confidence 2444455666 566665 788999999999888776 36655444
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.49 E-value=0.0016 Score=61.57 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=32.8
Q ss_pred cCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHH
Q 029806 30 DRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS 74 (187)
Q Consensus 30 ~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~ 74 (187)
.....|...+.+-+.+.. ..+.++||+|.|+...+.|++.|.
T Consensus 423 ~t~~~K~~AIv~eI~~~~---~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 423 RTEKGKFYAVVEEIAEKY---ERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp SSHHHHHHHHHHHHHHHH---HHTCCEEEECSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH---HCCCCEEEEeCCHHHHHHHHHHHh
Confidence 444458888777666522 246899999999999999999998
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.11 E-value=0.00068 Score=61.57 Aligned_cols=76 Identities=24% Similarity=0.200 Sum_probs=54.5
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
++.++||++|...++.+++.|...+ .- ...+++..+|..++++|+ + ...||+
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~~~---~~-~~q~~~~~~~~~ll~~f~-~-----------------------~~~vL~ 499 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSFEH---MK-EYRGIDQKELYSMLKKFR-R-----------------------DHGTIF 499 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCSCC---EE-CCTTCCSHHHHHHHHHHT-T-----------------------SCCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcc---hh-ccCCCChhHHHHHHHHhc-c-----------------------CCcEEE
Confidence 4679999999999999998887322 22 666777789999999999 5 378999
Q ss_pred Eec--CCCCcCcCCCCCCC--CCEEEEecCCC
Q 029806 133 VTD--ACLPLLSSGESAIS--ARVLINYELPT 160 (187)
Q Consensus 133 ~Td--~~~~~~~rGlDi~~--v~~VI~yd~P~ 160 (187)
++. - +++|+|+++ .++||...+|-
T Consensus 500 ~v~~gs----f~EGiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 500 AVSGGR----LSEGINFPGNELEMIILAGLPF 527 (620)
T ss_dssp EETTSC----C--------CCCCEEEESSCCC
T ss_pred EEecCc----eeccccCCCCceEEEEEEcCCC
Confidence 985 6 899999998 67899988873
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=95.74 E-value=0.042 Score=48.74 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccC
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~ 115 (187)
.+.+.+.+..+.. ..++.++||++|...++.+++. .+ ..++.=..+++ +.+.++.|+...
T Consensus 378 ~~~l~~~i~~l~~--~~~g~~lvlF~Sy~~l~~v~~~---~~-~~v~~q~~~~~---~~~~~~~~~~~~----------- 437 (551)
T 3crv_A 378 WKRYADYLLKIYF--QAKANVLVVFPSYEIMDRVMSR---IS-LPKYVESEDSS---VEDLYSAISANN----------- 437 (551)
T ss_dssp HHHHHHHHHHHHH--HCSSEEEEEESCHHHHHHHHTT---CC-SSEEECCSSCC---HHHHHHHTTSSS-----------
T ss_pred HHHHHHHHHHHHH--hCCCCEEEEecCHHHHHHHHHh---cC-CcEEEcCCCCC---HHHHHHHHHhcC-----------
Confidence 3455555555433 3457899999999999998873 33 34444333555 355778886432
Q ss_pred CCCCcCCCCCCceeEEEEe--cCCCCcCcCCCCCC-----CCCEEEEecCCC
Q 029806 116 GDESETGKDEHKSHMIVVT--DACLPLLSSGESAI-----SARVLINYELPT 160 (187)
Q Consensus 116 ~~~~~~~~~~~~~~iLv~T--d~~~~~~~rGlDi~-----~v~~VI~yd~P~ 160 (187)
..||+++ .- +.+|||+| .+++||...+|-
T Consensus 438 ------------~~vl~~v~gg~----~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 438 ------------KVLIGSVGKGK----LAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp ------------SCEEEEESSCC----SCCSSCCEETTEESEEEEEEESCCC
T ss_pred ------------CeEEEEEecce----ecccccccccCCcceeEEEEEcCCC
Confidence 4789998 56 89999999 378899888763
No 76
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.56 E-value=0.058 Score=50.23 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=63.0
Q ss_pred CCcEEEEeCChhhHHHHHHHHHc----cCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~----~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (187)
+.+++|.++++.-+..+++.+.+ .+ +++..+||+++..+|...++.++.|+ .
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g~-----------------------~ 472 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNGQ-----------------------I 472 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSSC-----------------------C
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcCC-----------------------C
Confidence 47999999999888777766644 35 79999999999999999999999984 8
Q ss_pred eEEEEecCCCCcCcCCCCCCCCCEEEE
Q 029806 129 HMIVVTDACLPLLSSGESAISARVLIN 155 (187)
Q Consensus 129 ~iLv~Td~~~~~~~rGlDi~~v~~VI~ 155 (187)
+|+|+|.. ++...+.+.++.+||-
T Consensus 473 ~IvVgT~~---ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 473 DVVIGTHA---LIQEDVHFKNLGLVII 496 (780)
T ss_dssp CEEEECTT---HHHHCCCCSCCCEEEE
T ss_pred CEEEECHH---HHhhhhhccCCceEEe
Confidence 99999987 3556678888888773
No 77
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.53 E-value=0.11 Score=43.62 Aligned_cols=81 Identities=10% Similarity=0.114 Sum_probs=62.3
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHc---cCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~---~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (187)
..+.++||.++++.-+..+++.+.. .+ +++..+||+.+..+|...++.+..+.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~l~~~~----------------------- 117 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEK-VKIFGFYSSMKKEEKEKFEKSFEEDD----------------------- 117 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSS-CCEEECCTTSCHHHHHHHHHHHHHTC-----------------------
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCC-ceEEEEECCCChhhHHHHHHHhhcCC-----------------------
Confidence 3468999999999999999988877 45 79999999999999999999998873
Q ss_pred eeEEEEecCCCCcCcCCCCCCCCCEEEE
Q 029806 128 SHMIVVTDACLPLLSSGESAISARVLIN 155 (187)
Q Consensus 128 ~~iLv~Td~~~~~~~rGlDi~~v~~VI~ 155 (187)
.+|+|+|+--+.-.-+-++..++++||-
T Consensus 118 ~~Iiv~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 118 YHILVFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp CSEEEEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred CCEEEECHHHHHHHHHHhccccccEEEE
Confidence 8999999862100011245567777763
No 78
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.07 E-value=0.37 Score=46.47 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=62.7
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccC--CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~--~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
.+.++||.++++.-+..+++.+...+ .+.+..+||+++..+|...++.++.+. .+
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~-----------------------~~ 176 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD-----------------------YH 176 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSC-----------------------CS
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC-----------------------CC
Confidence 45789999999999999999998832 279999999999999999999999874 89
Q ss_pred EEEEecCCC-CcCcCCCCCCCCCEEEE
Q 029806 130 MIVVTDACL-PLLSSGESAISARVLIN 155 (187)
Q Consensus 130 iLv~Td~~~-~~~~rGlDi~~v~~VI~ 155 (187)
|+|+|+--+ .++.+ +++.++++||-
T Consensus 177 IlV~Tp~rL~~~l~~-l~~~~l~~lVi 202 (1104)
T 4ddu_A 177 ILVFSTQFVSKNREK-LSQKRFDFVFV 202 (1104)
T ss_dssp EEEEEHHHHHHSHHH-HHTSCCSEEEE
T ss_pred EEEECHHHHHHHHHh-hcccCcCEEEE
Confidence 999997511 00112 45667888764
No 79
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.96 E-value=1.9 Score=33.72 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=62.2
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHH
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
..+..+...-|... +.-++..+.. .....++||.++++.-+..+++.+... + +.+..++|+.+..++...
T Consensus 83 ~lv~a~TGsGKT~~~~~~il~~l~~-~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~--- 157 (249)
T 3ber_A 83 IIGLAETGSGKTGAFALPILNALLE-TPQRLFALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLA--- 157 (249)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHH-SCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECTTSCHHHHHHH---
T ss_pred EEEEcCCCCCchhHhHHHHHHHHhc-CCCCceEEEEeCCHHHHHHHHHHHHHHhccCC-eeEEEEECCCChHHHHHH---
Confidence 33444444446543 3444444333 234568999999999888887766544 5 689999999876554432
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCC-cC--cCCCCCCCCCEEEE
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LL--SSGESAISARVLIN 155 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~-~~--~rGlDi~~v~~VI~ 155 (187)
...+ .+|+|+|.--+. ++ ..++++.++++||-
T Consensus 158 ~~~~------------------------~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 158 LAKK------------------------PHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp HHTC------------------------CSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred hcCC------------------------CCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 2332 789999963100 01 14567788887663
No 80
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.94 E-value=0.6 Score=41.05 Aligned_cols=51 Identities=8% Similarity=0.071 Sum_probs=46.1
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccc
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~ 104 (187)
.+++||.++++.-++...+.|...| +.+..+||+.+..++...++.++.+.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~~~~~~ 115 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG-VAAACLNSTQTREQQLEVMTGCRTGQ 115 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHHTC
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 3689999999999999999999888 79999999999999999999998874
No 81
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.90 E-value=4 Score=30.67 Aligned_cols=104 Identities=10% Similarity=0.139 Sum_probs=62.7
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC----CceEEEEeccCCHHHHHHHHHH
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~----~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
..+..+...-|... +.-++.. ........++||.|+++.-++.+++.+.+.. .+.+..++|+.+..++...
T Consensus 54 ~li~~~TGsGKT~~~~~~~~~~-~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~--- 129 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLATLQQ-LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV--- 129 (220)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-CCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---
T ss_pred EEEECCCCCchhhhhhHHHHHh-hhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---
Confidence 33444444446544 3333333 2212234589999999998888887776541 3789999999887665543
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCC--cCcCCCCCCCCCEEEE
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP--LLSSGESAISARVLIN 155 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~--~~~rGlDi~~v~~VI~ 155 (187)
+.++ ..+|+|+|.--+. +-...+++.++++||-
T Consensus 130 ~~~~-----------------------~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 130 LKKN-----------------------CPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp HHHS-----------------------CCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred HhcC-----------------------CCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 3343 2689999963100 0123456777887763
No 82
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=90.54 E-value=0.46 Score=32.56 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=33.4
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..++++||.+-.+....+..|...|+ ++..|.|++
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~-~v~~l~GG~ 89 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGI 89 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTC-CEEEETTHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCC-CEEEEcCcH
Confidence 4568999999999999999999999997 999999996
No 83
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.36 E-value=0.52 Score=45.63 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=62.2
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCc
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 127 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (187)
.+.+++|.|+++.-+..+++.+.+. + +.+..++|..+..++...++....|.
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g~----------------------- 706 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGK----------------------- 706 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTC-----------------------
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcCC-----------------------
Confidence 3579999999998888777777542 4 68999999999999999999999884
Q ss_pred eeEEEEecCCCCcCcCCCCCCCCCEEE
Q 029806 128 SHMIVVTDACLPLLSSGESAISARVLI 154 (187)
Q Consensus 128 ~~iLv~Td~~~~~~~rGlDi~~v~~VI 154 (187)
.+|+|+|.. ++...+.+.++.+||
T Consensus 707 ~dIvV~T~~---ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 707 IDILIGTHK---LLQSDVKFKDLGLLI 730 (1151)
T ss_dssp CSEEEECTH---HHHSCCCCSSEEEEE
T ss_pred CCEEEECHH---HHhCCccccccceEE
Confidence 899999964 266668888887766
No 84
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.90 E-value=0.66 Score=41.57 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=52.2
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeEEE
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 132 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv 132 (187)
.+++||.++++.-++...+.|...| +.+..++|+++..++..+++.+.... +..++++
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~l~~~~---------------------~~~~Ilv 141 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG-ISATMLNASSSKEHVKWVHAEMVNKN---------------------SELKLIY 141 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT-CCEEECCSSCCHHHHHHHHHHHHCTT---------------------CCCCEEE
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC-CcEEEEeCCCCHHHHHHHHHHhhccc---------------------CCCCEEE
Confidence 4689999999999999999998888 79999999999999999888884321 1488999
Q ss_pred EecC
Q 029806 133 VTDA 136 (187)
Q Consensus 133 ~Td~ 136 (187)
+|+.
T Consensus 142 ~Tpe 145 (591)
T 2v1x_A 142 VTPE 145 (591)
T ss_dssp ECHH
T ss_pred EChh
Confidence 9984
No 85
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=89.72 E-value=1.2 Score=28.79 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=30.9
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..+++++|.+-.++...+..|...|+-.+..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4568899999998889999999999996456667 8753
No 86
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=88.91 E-value=1.7 Score=30.76 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=41.2
Q ss_pred EEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 56 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 56 ~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
.+||.+...-..++...+...| +.+..|+++.+.+.|.+-+++|.+.
T Consensus 5 fvvfssdpeilkeivreikrqg-vrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchHHHHHHHHHHHHHc
Confidence 5688888888888888888888 7999999999999999999999874
No 87
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=88.32 E-value=6.2 Score=29.14 Aligned_cols=102 Identities=10% Similarity=0.137 Sum_probs=61.4
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHH
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
..+..+...-|... +.-++..+.. .....++||.++++.-+..+.+.+... +.+.+..++|+.+..+.. +.
T Consensus 43 ~lv~apTGsGKT~~~~~~~~~~~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~ 118 (206)
T 1vec_A 43 ILARAKNGTGKSGAYLIPLLERLDL-KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MR 118 (206)
T ss_dssp EEEECCSSSTTHHHHHHHHHHHCCT-TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HH
T ss_pred EEEECCCCCchHHHHHHHHHHHhcc-cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---Hh
Confidence 44455444446643 4444544222 234568999999999888887777543 136889999998765543 22
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCC-CcCc-CCCCCCCCCEEE
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-PLLS-SGESAISARVLI 154 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~~~~-rGlDi~~v~~VI 154 (187)
+.. ..+|+|+|...+ ..+. ..+++.++++||
T Consensus 119 ~~~------------------------~~~i~v~T~~~l~~~~~~~~~~~~~~~~lV 151 (206)
T 1vec_A 119 LDD------------------------TVHVVIATPGRILDLIKKGVAKVDHVQMIV 151 (206)
T ss_dssp TTS------------------------CCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred cCC------------------------CCCEEEeCHHHHHHHHHcCCcCcccCCEEE
Confidence 333 378999997310 0012 234667777766
No 88
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=88.29 E-value=0.58 Score=31.43 Aligned_cols=37 Identities=5% Similarity=0.099 Sum_probs=33.1
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..++++||.+-.+....+..|...|+ ++..|.|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~-~v~~l~GG~ 90 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGV-NAVNVEGGM 90 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTC-EEEEETTHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCC-CEEEecccH
Confidence 4568999999999999999999999997 999999986
No 89
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=87.99 E-value=1 Score=30.49 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=33.0
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..+++|+|.+-.+....+..|...|+-++..|.|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 456899999999889999999999999645889999863
No 90
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=87.76 E-value=0.58 Score=31.54 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=32.9
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..++++||.+-.+....+..|...|+ ++..|.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~-~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGI-DAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTC-EEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCC-CeEEeCCCH
Confidence 4567899999999899999999999997 999999985
No 91
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=87.47 E-value=4.5 Score=30.84 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=62.7
Q ss_pred EEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC----CceEEEEeccCCHHHHHHHHHHH
Q 029806 26 YVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 26 ~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~----~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
.+..+...-|... +.-++..+.. .....++||.++++.-+..+.+.+...+ .+.+..++|+.+..++...+
T Consensus 65 l~~a~TGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--- 140 (230)
T 2oxc_A 65 IVQAKSGTGKTCVFSTIALDSLVL-ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL--- 140 (230)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---
T ss_pred EEECCCCCcHHHHHHHHHHHHHHh-cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---
Confidence 4444444446654 4555555322 3445799999999999888888776542 36899999998876654332
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCc-C-cCCCCCCCCCEEE
Q 029806 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPL-L-SSGESAISARVLI 154 (187)
Q Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~-~-~rGlDi~~v~~VI 154 (187)
. ..+|+|+|.--+.. + ...+++.++++||
T Consensus 141 -~------------------------~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 141 -K------------------------KCHIAVGSPGRIKQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp -T------------------------SCSEEEECHHHHHHHHHTTSSCGGGCCEEE
T ss_pred -c------------------------CCCEEEECHHHHHHHHhcCCcccccCCEEE
Confidence 1 27899999741000 1 2345666777665
No 92
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=87.34 E-value=2.7 Score=31.15 Aligned_cols=104 Identities=12% Similarity=0.037 Sum_probs=64.0
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcC--CCCCCcEEEEeCChhhHHHHHHHHHccC-CceEEEEeccCCHHHHHHHHHHH
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAG--RRPGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~--~~~~~k~IVF~~~~~~~~~l~~~L~~~~-~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
..+..+...-|... +.-++..+... .....+++|.++++.-+..+.+.+.+.. .+.+..++|+.+...+...+
T Consensus 41 ~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 117 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL--- 117 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---
Confidence 44445544447655 44455543211 1345789999999999999888887652 36788999998765544333
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEecCCC-CcC-cCCCCCCCCCEEEE
Q 029806 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-PLL-SSGESAISARVLIN 155 (187)
Q Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~~~-~rGlDi~~v~~VI~ 155 (187)
..+ .+|+|+|.-.+ .++ ...+++.++++||-
T Consensus 118 ~~~------------------------~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 118 LRG------------------------ADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp HHC------------------------CSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred hCC------------------------CCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 233 78999996200 001 22456677777663
No 93
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=87.02 E-value=1.2 Score=31.00 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=30.7
Q ss_pred CcEEEEe-CChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 54 LPMIVCC-SSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 54 ~k~IVF~-~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.++||+| .+-.++...+..|...|+ ++..|.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHH
Confidence 7899999 577788899999999997 9999999974
No 94
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.81 E-value=2.6 Score=32.54 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=61.5
Q ss_pred EEccCcchHHHH-HHHHHHHHhcC----CCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHH
Q 029806 27 VAVDRLQFKMET-LVELLHLVVAG----RRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 27 ~~~~~~~~Kl~~-L~~ll~~~~~~----~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l 97 (187)
+..+...-|... +.-++..+... ...+.++||.++++.-+..+.+.+.+. + +.+..++|+.+..++...+
T Consensus 71 ~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~ 149 (242)
T 3fe2_A 71 GVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDL 149 (242)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHH
T ss_pred EECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC-ceEEEEECCCChHHHHHHh
Confidence 333433335543 44445443321 124578999999999888877666543 5 6899999998877665443
Q ss_pred HHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCC-CcCc-CCCCCCCCCEEE
Q 029806 98 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-PLLS-SGESAISARVLI 154 (187)
Q Consensus 98 ~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~~~~-rGlDi~~v~~VI 154 (187)
+++ .+|+|+|.--+ .++. ..+++.++++||
T Consensus 150 ---~~~------------------------~~I~v~Tp~~l~~~l~~~~~~~~~~~~lV 181 (242)
T 3fe2_A 150 ---ERG------------------------VEICIATPGRLIDFLECGKTNLRRTTYLV 181 (242)
T ss_dssp ---HHC------------------------CSEEEECHHHHHHHHHHTSCCCTTCCEEE
T ss_pred ---cCC------------------------CCEEEECHHHHHHHHHcCCCCcccccEEE
Confidence 343 78999996300 0022 235677888776
No 95
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.22 E-value=1.8 Score=32.96 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=48.6
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHcc--CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~--~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
.+.++||.++++.-+..+.+.+... ..+.+..++|+.+..++. +.+.++ .+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------------------~~ 145 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISKG------------------------VD 145 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHHSC------------------------CS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcCC------------------------CC
Confidence 5678999999999998888888764 226889999987655443 333443 78
Q ss_pred EEEEecCCCC--cCcCCCCCCCCCEEEE
Q 029806 130 MIVVTDACLP--LLSSGESAISARVLIN 155 (187)
Q Consensus 130 iLv~Td~~~~--~~~rGlDi~~v~~VI~ 155 (187)
|+|+|.-.+. +....+++.++++||-
T Consensus 146 iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 146 IIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp EEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 9999963100 0223566788887763
No 96
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=86.03 E-value=0.89 Score=32.06 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=32.9
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..++||||.+-.++...+..|...|+-++..|.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 456899999999888999999999988545888999963
No 97
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=85.54 E-value=0.92 Score=30.82 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=32.4
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..++++||.+-......+..|...|+-++..|.|++
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 34578999999999999999999999964588899985
No 98
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=85.35 E-value=0.93 Score=30.99 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=32.1
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+.++++++|.+-.+....+..|.+.|+ ....|.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~-~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGI-DAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTC-EEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCC-CEEEecChH
Confidence 4568999999999899999999999995 888888886
No 99
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.29 E-value=13 Score=29.99 Aligned_cols=103 Identities=11% Similarity=0.154 Sum_probs=63.7
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHHHH
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
..+..+...-|... +.-++..+.. .....++||.|+++.-++.+++.+.+. +.+.+..++|+.+..++...+
T Consensus 48 ~lv~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 124 (391)
T 1xti_A 48 VLCQAKSGMGKTAVFVLATLQQLEP-VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL-- 124 (391)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCC-CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH--
T ss_pred EEEECCCCCcHHHHHHHHHHHhhcc-cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH--
Confidence 44455544446654 3344444221 234569999999999988887777654 137899999998876655433
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCC--cCcCCCCCCCCCEEE
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP--LLSSGESAISARVLI 154 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~--~~~rGlDi~~v~~VI 154 (187)
..+ ..+|+|+|.-.+. +....+++.++++||
T Consensus 125 -~~~-----------------------~~~iiv~T~~~l~~~~~~~~~~~~~~~~vV 157 (391)
T 1xti_A 125 -KKN-----------------------CPHIVVGTPGRILALARNKSLNLKHIKHFI 157 (391)
T ss_dssp -HHS-----------------------CCSEEEECHHHHHHHHHTTSSCCTTCSEEE
T ss_pred -hcC-----------------------CCCEEEECHHHHHHHHHcCCccccccCEEE
Confidence 334 2689999964100 012335677777766
No 100
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=82.43 E-value=2.2 Score=29.06 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=32.3
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..+++|||.+-.+....+..|...|+-. ..|.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~-~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTP-YYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCC-EEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCE-EEecCCHH
Confidence 456899999999999999999999999645 88999963
No 101
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=82.25 E-value=1.7 Score=28.66 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=31.1
Q ss_pred CcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 54 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.++++||.+-......+..|...|+ .+..|.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~-~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGY-EAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTC-CEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCC-cEEEEcccHH
Confidence 8999999999999999999999996 6888989874
No 102
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=82.24 E-value=1.3 Score=31.62 Aligned_cols=38 Identities=11% Similarity=0.243 Sum_probs=33.1
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..++||||.+-.+....+..|...|+-++..|.|++
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 45689999999999999999999999964688999996
No 103
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=82.12 E-value=1.6 Score=31.48 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=31.6
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+..++||||.+-.+....+..|...|+-++..|.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 45789999999888889999999999546999999974
No 104
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=82.10 E-value=3.1 Score=35.56 Aligned_cols=40 Identities=5% Similarity=0.084 Sum_probs=31.9
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETER 93 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR 93 (187)
..++||.|+++.-+..+...+.+. + +.+..++|+.+...+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLG-YNIASISGATSDSVS 95 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT-CCEEEECTTTGGGSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCC-cEEEEEcCCCcchhh
Confidence 689999999998887777666554 6 799999999876554
No 105
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=81.46 E-value=1.6 Score=30.44 Aligned_cols=37 Identities=11% Similarity=-0.017 Sum_probs=31.5
Q ss_pred CCCCcEEEEeCChhh--HHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDE--LDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~--~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..+++|+|.+-.. +...+..|...|+ .+..|.|++
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~-~v~~l~GG~ 107 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGF-EAYELAGAL 107 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTC-EEEEETTHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCcH
Confidence 456889999999877 7889999999995 888899986
No 106
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=80.88 E-value=8.2 Score=28.91 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=56.7
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHH
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
..+..+...-|... +..++..+.. .....++||.++++.-+..+.+.+.... .+.+..++|+.+..++... +
T Consensus 54 ~lv~~pTGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~ 129 (224)
T 1qde_A 54 VLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L 129 (224)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCT-TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc-cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C
Confidence 44455554447655 5555655322 3345799999999998888887765431 2688899998765443211 1
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEecCCC-C-cCcCCCCCCCCCEEE
Q 029806 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-P-LLSSGESAISARVLI 154 (187)
Q Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~-~~~rGlDi~~v~~VI 154 (187)
. ..+|+|+|...+ . +....+++..+++||
T Consensus 130 ~-------------------------~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 130 R-------------------------DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp T-------------------------TCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred C-------------------------CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 1 267999996410 0 012345667777766
No 107
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=80.28 E-value=1.7 Score=30.81 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=32.8
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+..+++++|.+-.+....+..|...|+-++..|.|++.
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 346889999999989999999999999645888999863
No 108
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=80.14 E-value=1.5 Score=31.04 Aligned_cols=37 Identities=3% Similarity=0.129 Sum_probs=32.0
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
...++||||.+-..+...+..|...|+-++..|.|++
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 4578999999998888999999999964599999986
No 109
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=79.83 E-value=1.7 Score=31.20 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=32.4
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..++||||.+-..+...+..|...|+-++..|.|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 45678999999998999999999999964688899985
No 110
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=79.82 E-value=4.6 Score=34.63 Aligned_cols=40 Identities=3% Similarity=-0.012 Sum_probs=28.7
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETER 93 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR 93 (187)
..++||.|+++.-+..+.+.+.+. + +.+..+||+.+..++
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 98 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVS 98 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEECCCC-----C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCcchh
Confidence 688999999998888777766554 6 799999999866554
No 111
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=79.38 E-value=5.6 Score=30.45 Aligned_cols=101 Identities=11% Similarity=0.126 Sum_probs=53.6
Q ss_pred EEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHHhc
Q 029806 27 VAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRH 102 (187)
Q Consensus 27 ~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~Fr~ 102 (187)
+..+...-|... +..++..+.. .....++||.++++.-+..+.+.+.+.+ .+.+..++|+.+.... .+.++.
T Consensus 72 i~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~ 147 (237)
T 3bor_A 72 AQAQSGTGKTATFAISILQQLEI-EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQA 147 (237)
T ss_dssp ECCCSSHHHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------
T ss_pred EECCCCCcHHHHHHHHHHHHHHh-cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhc
Confidence 333434445543 4444444221 2345799999999999888888776542 2578888887654332 233334
Q ss_pred ccccccccccccCCCCCcCCCCCCceeEEEEecCCC-CcCcC-CCCCCCCCEEE
Q 029806 103 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-PLLSS-GESAISARVLI 154 (187)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~~~~r-GlDi~~v~~VI 154 (187)
+ ..+|+|+|.--+ .++.+ .+++.++++||
T Consensus 148 ~-----------------------~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 148 E-----------------------APHIVVGTPGRVFDMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp C-----------------------CCSEEEECHHHHHHHHHTTSSCSTTCCEEE
T ss_pred C-----------------------CCCEEEECHHHHHHHHHhCCcCcccCcEEE
Confidence 3 378999994200 00233 36677788766
No 112
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=79.29 E-value=7.3 Score=30.48 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=50.8
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (187)
.+.++||.++++.-++.+.+.+.+.. .+.+..++|+.+..+.. +.+..+ .
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~------------------------~ 177 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEA---QKLGNG------------------------I 177 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHH---HHHHHC------------------------C
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHH---HHhcCC------------------------C
Confidence 35789999999999888888776531 25788899987765543 333443 7
Q ss_pred eEEEEecCCCC-cC--cCCCCCCCCCEEE
Q 029806 129 HMIVVTDACLP-LL--SSGESAISARVLI 154 (187)
Q Consensus 129 ~iLv~Td~~~~-~~--~rGlDi~~v~~VI 154 (187)
+|+|+|+--+- .+ ..++++.++++||
T Consensus 178 ~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lV 206 (262)
T 3ly5_A 178 NIIVATPGRLLDHMQNTPGFMYKNLQCLV 206 (262)
T ss_dssp SEEEECHHHHHHHHHHCTTCCCTTCCEEE
T ss_pred CEEEEcHHHHHHHHHccCCcccccCCEEE
Confidence 89999941000 01 2246778888776
No 113
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=77.89 E-value=2.8 Score=33.85 Aligned_cols=100 Identities=5% Similarity=-0.002 Sum_probs=58.3
Q ss_pred EEEEccCcchHHH-HHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC----CceEEEEeccCCHHHHHHHHHH
Q 029806 25 FYVAVDRLQFKME-TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 25 ~~~~~~~~~~Kl~-~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~----~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
..+..+...-|.. .+..++..+.. .....++||.++++.-+..++..+...+ .+.+..++|+.+...+.
T Consensus 134 ~l~~a~TGsGKT~a~~lp~l~~l~~-~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----- 207 (300)
T 3fmo_B 134 LIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----- 207 (300)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-----
T ss_pred EEEECCCCCCccHHHHHHHHHhhhc-cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-----
Confidence 3334444333654 35566666332 3344589999999998888777665432 35677777765432111
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCC-CcC-c-CCCCCCCCCEEEE
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-PLL-S-SGESAISARVLIN 155 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~~~-~-rGlDi~~v~~VI~ 155 (187)
+ ...+|+|+|+--+ .++ . ..+++.++.++|-
T Consensus 208 -~------------------------~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 208 -K------------------------ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp -C------------------------CCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred -c------------------------CCCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 1 1368999997510 001 1 3577888888773
No 114
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=77.45 E-value=2.5 Score=30.39 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=31.7
Q ss_pred CCCCcEEEEeCCh--hhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSR--DELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~--~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..++||||.+- ..+...+..|...|+ ++..|.|++
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~-~v~~l~GG~ 108 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGI 108 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTC-EEEEEESHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCC-eEEEeCCcH
Confidence 3467899999987 578889999999996 899999996
No 115
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=77.28 E-value=3.4 Score=31.72 Aligned_cols=63 Identities=8% Similarity=0.140 Sum_probs=40.1
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccC
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDL 88 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~ 88 (187)
..+..+...-|... +.-++..+......+.++||.++++.-+..+++.+.+. + +.+..++|+.
T Consensus 69 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~ 136 (245)
T 3dkp_A 69 LLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG-FRIHMIHKAA 136 (245)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC-CCEECCCHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEecCc
Confidence 34444444446644 55555554322334568999999999988888877654 4 5777777653
No 116
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=77.09 E-value=11 Score=31.03 Aligned_cols=69 Identities=9% Similarity=0.088 Sum_probs=45.5
Q ss_pred EEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCc---eEEEEeccCCHHHHHHH
Q 029806 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI---SFSSLHSDLAETERTLI 96 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i---~~~~lhg~~~~~eR~~~ 96 (187)
.+..+..--|.-...-++..... .+..++||.|+++.-+..+.+.+.+..++ .+..+||+.+..++...
T Consensus 27 ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 27 LIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhh
Confidence 33444444466555554443222 34589999999998888888877665224 89999999988776543
No 117
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=76.92 E-value=1.9 Score=30.46 Aligned_cols=38 Identities=8% Similarity=-0.052 Sum_probs=32.4
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+..++||||.+-.+....+..|...|+-++..|.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 35789999999988889999999999646888999984
No 118
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=76.42 E-value=29 Score=28.29 Aligned_cols=101 Identities=10% Similarity=0.085 Sum_probs=60.6
Q ss_pred EEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHHh
Q 029806 26 YVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFR 101 (187)
Q Consensus 26 ~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~Fr 101 (187)
.+..+...-|... +.-++..+.. .....++||.++++.-+..+++.+.+.+ .+.+..++|+.+..+....+ .
T Consensus 78 lv~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~ 153 (410)
T 2j0s_A 78 IAQSQSGTGKTATFSISVLQCLDI-QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL---D 153 (410)
T ss_dssp EEECCTTSSHHHHHHHHHHHTCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHH---H
T ss_pred EEECCCCCCchHHHHHHHHHHHhh-ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHh---h
Confidence 3344444446543 3344443221 2356899999999998888888776542 26888899998776654433 3
Q ss_pred cccccccccccccCCCCCcCCCCCCceeEEEEecCCC-CcCcC-CCCCCCCCEEE
Q 029806 102 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-PLLSS-GESAISARVLI 154 (187)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~~~~r-GlDi~~v~~VI 154 (187)
.+ .+|+|+|.--+ .++.+ .++...+++||
T Consensus 154 ~~------------------------~~ivv~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 154 YG------------------------QHVVAGTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp HC------------------------CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred cC------------------------CCEEEcCHHHHHHHHHhCCccHhheeEEE
Confidence 33 67899995200 00223 35666777766
No 119
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=76.32 E-value=5.6 Score=30.24 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=48.2
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCce
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 128 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (187)
.+.++||.++++.-+..+.+.+...+ .+.+..++|+.+..+....+ . ..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~------------------------~~ 147 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI----N------------------------NI 147 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH----T------------------------TC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC----C------------------------CC
Confidence 45789999999999888888776543 26889999987765543322 2 27
Q ss_pred eEEEEecCCC-CcCcC--CCCCCCCCEEE
Q 029806 129 HMIVVTDACL-PLLSS--GESAISARVLI 154 (187)
Q Consensus 129 ~iLv~Td~~~-~~~~r--GlDi~~v~~VI 154 (187)
+|+|+|.-.+ ..+.+ .+++.++++||
T Consensus 148 ~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 148 NILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp SEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred CEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 8999996410 00112 35667777766
No 120
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=75.07 E-value=11 Score=31.78 Aligned_cols=101 Identities=9% Similarity=0.102 Sum_probs=61.7
Q ss_pred EEccCcchHHH-HHHHHHHHHhcCC----CCCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHH
Q 029806 27 VAVDRLQFKME-TLVELLHLVVAGR----RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 27 ~~~~~~~~Kl~-~L~~ll~~~~~~~----~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~ 98 (187)
+..+...-|.. .+.-++..+.... ....++||.++++.-+..+++.+.+.+ .+.+..++|+.+..++...
T Consensus 98 ~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~-- 175 (434)
T 2db3_A 98 ACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNEC-- 175 (434)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHH--
T ss_pred EECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHH--
Confidence 33333333554 3444555433311 235689999999999988888776542 2688899999887665432
Q ss_pred HHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCC-CcCcC-CCCCCCCCEEE
Q 029806 99 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-PLLSS-GESAISARVLI 154 (187)
Q Consensus 99 ~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~~~~r-GlDi~~v~~VI 154 (187)
...+ .+|+|+|.--+ .++.+ .+++..++++|
T Consensus 176 -l~~~------------------------~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lV 208 (434)
T 2db3_A 176 -ITRG------------------------CHVVIATPGRLLDFVDRTFITFEDTRFVV 208 (434)
T ss_dssp -HTTC------------------------CSEEEECHHHHHHHHHTTSCCCTTCCEEE
T ss_pred -hhcC------------------------CCEEEEChHHHHHHHHhCCcccccCCeEE
Confidence 3333 78999996310 00222 35677788776
No 121
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=74.81 E-value=32 Score=27.85 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=60.4
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHH
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
..+..+...-|... +.-++..+.. .....++||.|+++.-++.+.+.+.... .+.+..++|+.+..+... ..
T Consensus 61 ~li~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~ 136 (400)
T 1s2m_A 61 ILARAKNGTGKTAAFVIPTLEKVKP-KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---RL 136 (400)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---HT
T ss_pred EEEECCCCcHHHHHHHHHHHHHHhh-ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---Hh
Confidence 34444444446653 3344444221 2245689999999998888887776542 268899999887654322 22
Q ss_pred hcccccccccccccCCCCCcCCCCCCceeEEEEecCCC-CcC-cCCCCCCCCCEEE
Q 029806 101 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACL-PLL-SSGESAISARVLI 154 (187)
Q Consensus 101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~~~-~rGlDi~~v~~VI 154 (187)
.. ..+|+|+|.-.+ .++ ....++.++++||
T Consensus 137 ~~------------------------~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 137 NE------------------------TVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp TS------------------------CCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred cC------------------------CCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 22 378999995300 002 2335677777766
No 122
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.41 E-value=7.9 Score=29.77 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=49.3
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCcee
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 129 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (187)
..++||.|+++.-+..+.+.+.+.+ .+.+..++|+.+..+... ....+ .+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~------------------------~~ 152 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQMG------------------------CH 152 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHSSC------------------------CS
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhCCC------------------------CC
Confidence 3689999999998888777765431 267888999887655432 23332 78
Q ss_pred EEEEecCCCC-cC-cCCCCCCCCCEEE
Q 029806 130 MIVVTDACLP-LL-SSGESAISARVLI 154 (187)
Q Consensus 130 iLv~Td~~~~-~~-~rGlDi~~v~~VI 154 (187)
|+|+|.--+. ++ ...+++.++++||
T Consensus 153 Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 153 LLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp EEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred EEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 9999974100 01 2235677778766
No 123
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=74.32 E-value=5.4 Score=38.15 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---Cc----eEEEEeccCCHHHHHHHHHHHhc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DI----SFSSLHSDLAETERTLILEEFRH 102 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i----~~~~lhg~~~~~eR~~~l~~Fr~ 102 (187)
|.....-++..+. ..+.++||.++++.-+..+++.+...+ .+ .+..+||+++..++.+..+.+++
T Consensus 84 KTl~~lp~l~~~~---~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~ 155 (1054)
T 1gku_B 84 KTSFGLAMSLFLA---LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN 155 (1054)
T ss_dssp SHHHHHHHHHHHH---TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHh---hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC
Confidence 5544444444422 235789999999999888887776431 25 78999999999887776666654
No 124
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=73.90 E-value=14 Score=33.96 Aligned_cols=41 Identities=2% Similarity=-0.011 Sum_probs=29.3
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERT 94 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~ 94 (187)
..++||.|+++.-+..+...+.+. + +.+..+||+.+...+.
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~ 340 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSV 340 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECCC-----CH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCC-ceEEEEeCCcchhhhH
Confidence 689999999998888777666554 6 7999999998766543
No 125
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=73.12 E-value=31 Score=27.75 Aligned_cols=70 Identities=13% Similarity=0.015 Sum_probs=45.7
Q ss_pred EEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHHHHHH
Q 029806 26 YVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 26 ~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR~~~l 97 (187)
.+..+...-|... +.-++..+.. .....++||.|+++.-+..+.+.+.+. + +.+..++|+.+..+....+
T Consensus 62 lv~~~TGsGKT~~~~~~~~~~l~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~ 136 (394)
T 1fuu_A 62 LAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGL 136 (394)
T ss_dssp EECCCSSHHHHHHHHHHHHHHCCT-TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEECSSCCHHHHHHHH
T ss_pred EEECCCCChHHHHHHHHHHHHhhc-cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC-eeEEEEeCCCchHHHHhhc
Confidence 3444444446644 4444554222 334679999999999888887776543 4 6899999998876655443
No 126
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=72.87 E-value=19 Score=28.86 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=40.9
Q ss_pred CCCcEEEEeC---------------------ChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 52 PGLPMIVCCS---------------------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 52 ~~~k~IVF~~---------------------~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
+.+-+|||+| +...++.|.+.|+.+|+ . +.++.+++.++-.+.+++|.+.
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF-~-V~~~~dlt~~em~~~l~~~~~~ 86 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHF-E-IKPHDDCTVEQIYEILKIYQLM 86 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTC-E-EEEEESCCHHHHHHHHHHHHHS
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCC-E-EEEEeCCCHHHHHHHHHHHHHh
Confidence 4477888887 34578899999999996 5 4677899999999999999864
No 127
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=72.53 E-value=6.9 Score=30.93 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=34.0
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCH
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 90 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~ 90 (187)
.+.+++|+||.+-.++...+..|...|+-++..+.|++..
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 4568999999999999999999999996468899999853
No 128
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=71.29 E-value=2.7 Score=28.86 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=30.1
Q ss_pred CcEEEEeCChhhHHHHHHHHHcc------CCceEEEEeccCC
Q 029806 54 LPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSDLA 89 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~~------~~i~~~~lhg~~~ 89 (187)
.+++|+|.+-.+....+.+|... |+.++..|.|++.
T Consensus 73 ~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 73 VPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 48999999988888888899887 5557889999863
No 129
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=70.42 E-value=9.9 Score=27.99 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=58.9
Q ss_pred EEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccc
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~ 104 (187)
.+..+.+.+.-...+.+.++. .. .....+.|.|.+...++.+.+.|...| +.+..+.++.. .|
T Consensus 36 ~~~~~~~~~~e~~~i~~~I~~-~~--~g~~~iAVL~r~~~~~~~l~~~L~~~g-i~~~~l~~~~~---------~~---- 98 (174)
T 3dmn_A 36 NVVVTPNFEAGVDQVVDQLAM-ND--SERDTTAIIGKSLAECEALTKALKARG-EQVTLIQTENQ---------RL---- 98 (174)
T ss_dssp EEEEESSHHHHHHHHHHHHHH-HH--HTTCCEEEEESSHHHHHHHHHHHHTTT-CCEEECSSCC----------CC----
T ss_pred EEEEeCCHHHHHHHHHHHHHH-hc--cCCCcEEEEecCHHHHHHHHHHHHHcC-Ccceeeccccc---------cc----
Confidence 344554444356667776665 22 124678888999999999999998887 67766654321 01
Q ss_pred ccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCC
Q 029806 105 MKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP 159 (187)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P 159 (187)
...+.|.|-- .+.|+.++ +||.+++.
T Consensus 99 ----------------------~~~v~v~t~~----~~KGlEf~---~V~~~~~~ 124 (174)
T 3dmn_A 99 ----------------------APGVIVVPSF----LAKGLEFD---AVIVWNAN 124 (174)
T ss_dssp ----------------------CSSEEEEEGG----GCTTCCEE---EEEEETCB
T ss_pred ----------------------CCCeEEEEcc----ccCCcCCC---EEEEecCC
Confidence 2457888988 99998864 56666643
No 130
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=70.40 E-value=11 Score=28.24 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=41.3
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC-------CceEEEEeccCCHH
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA-------DISFSSLHSDLAET 91 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~-------~i~~~~lhg~~~~~ 91 (187)
..+..+...-|... +.-++..+.. .....++||.++++.-+..+.+.+.+.. .+.+..++|+.+..
T Consensus 44 ~lv~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (219)
T 1q0u_A 44 MVGQSQTGTGKTHAYLLPIMEKIKP-ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ 117 (219)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHHHh-CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH
Confidence 34444544446654 4444444222 2345789999999998888877665431 26888899886543
No 131
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=68.69 E-value=14 Score=30.16 Aligned_cols=74 Identities=9% Similarity=0.124 Sum_probs=49.6
Q ss_pred CcEEEEeCChhhHHHHHHHHHcc---CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCCCceeE
Q 029806 54 LPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 130 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~~---~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 130 (187)
.++||.++++.-+..+++.+.+. ..+.+..++|+.+..+... .+..+ .+|
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~------------------------~~I 154 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLERG------------------------CHL 154 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTTC------------------------CSE
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhCC------------------------CCE
Confidence 57999999999888888777543 1268999999987765443 33333 789
Q ss_pred EEEecCCCC-cCc-CCCCCCCCCEEE
Q 029806 131 IVVTDACLP-LLS-SGESAISARVLI 154 (187)
Q Consensus 131 Lv~Td~~~~-~~~-rGlDi~~v~~VI 154 (187)
+|+|.--+. ++. ..+++.++++||
T Consensus 155 ~v~Tp~~l~~~l~~~~~~~~~~~~iV 180 (417)
T 2i4i_A 155 LVATPGRLVDMMERGKIGLDFCKYLV 180 (417)
T ss_dssp EEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred EEEChHHHHHHHHcCCcChhhCcEEE
Confidence 999973100 011 235667777766
No 132
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=66.51 E-value=7.3 Score=30.57 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=32.3
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+.+++|+||.+-.++...+..|...|+-++..+.|++
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 45689999999998899999999999954588898886
No 133
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=66.15 E-value=14 Score=28.98 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHc-cCCceEEEEeccC
Q 029806 38 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDL 88 (187)
Q Consensus 38 ~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~-~~~i~~~~lhg~~ 88 (187)
.|.+.+.... ..+.+++|+||.+-.++...+..|.. .|+-++..+.|++
T Consensus 213 ~l~~~~~~~~--~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 213 ELAKLYADAG--LDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp HHHHHHHHHT--CCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHcC--CCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 3445554421 24568999999998888888889985 7854588999985
No 134
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=66.06 E-value=8.4 Score=30.39 Aligned_cols=50 Identities=14% Similarity=-0.011 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChhh-HHHHHHHHHccCCceEEEEeccC
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDE-LDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~~-~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
+.+.+.+..+- ..+..++||||.+-.. +..++..|...|+-++..|.|++
T Consensus 72 ~~~~~~~~~~g--i~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 72 ETFAVAMRELG--VNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp HHHHHHHHHTT--CCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHcC--CCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 34455555521 1456889999998666 78888899998954688999985
No 135
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=66.00 E-value=4.8 Score=32.52 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=43.8
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
+.+.+|||.+....++.|.+.|+.+|+ . +.++.+++.++-.+.+++|.+.
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF-~-V~~~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGY-E-VQKFLHLSMHGISQILGQFACM 91 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTE-E-EEEEESCBHHHHHHHHHHHHTC
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCC-E-EEEeeCCCHHHHHHHHHHHHhc
Confidence 458899999999999999999999995 4 5667799999999999999874
No 136
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=65.47 E-value=6.9 Score=28.30 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=29.8
Q ss_pred CCcEEEEeCCh---------hhHHHHHHHHHccCCceEEEEeccC
Q 029806 53 GLPMIVCCSSR---------DELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 53 ~~k~IVF~~~~---------~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
..++||||.+- ..+..++..|...|+ .+..|.|++
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~-~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTC-CEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCC-cEEEeCCcH
Confidence 57999999987 357888999999995 899999995
No 137
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=64.75 E-value=50 Score=26.03 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=43.9
Q ss_pred EEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc---CCceEEEEeccCCHHHHH
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERT 94 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~---~~i~~~~lhg~~~~~eR~ 94 (187)
..+..+...-|.....-.+..... ..+..++||.++++.-++.+++.+.+. ..+.+..++|+.+..+..
T Consensus 47 ~l~~~~TGsGKT~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 118 (367)
T 1hv8_A 47 IVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQI 118 (367)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHhc-ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH
Confidence 444455544476554433333122 235679999999998888888877653 126888899988765543
No 138
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=64.34 E-value=11 Score=30.60 Aligned_cols=49 Identities=6% Similarity=-0.026 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeCChh-hHHHHHHHHHccCCceEEEEeccC
Q 029806 38 TLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 38 ~L~~ll~~~~~~~~~~~k~IVF~~~~~-~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+.+.+..+- ..+..++||||.+-. .+...+..|...|+-++..|.|++
T Consensus 98 ~~~~~l~~lg--i~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 98 QFAELMDRKG--IARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp HHHHHHHHTT--CCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHcC--CCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 4555555521 245689999999866 688888899998964689999985
No 139
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=64.34 E-value=43 Score=25.19 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=40.6
Q ss_pred CCCcEEEEeCCh--------------hhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 52 PGLPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 52 ~~~k~IVF~~~~--------------~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
+.+.+|||++.. ..++.|.+.|..+|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF-~V-~~~~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGF-EV-KCFNDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTC-EE-EEEESCCHHHHHHHHHHHHTS
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EE-EEEeCCCHHHHHHHHHHHhhh
Confidence 346799998853 568899999999996 54 566789999999999999764
No 140
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=63.21 E-value=6.1 Score=31.77 Aligned_cols=39 Identities=10% Similarity=0.177 Sum_probs=33.6
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+.+++++||.+-.++...+.+|...|+-++..|.|++.
T Consensus 179 ~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 179 KKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp GTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 456899999999999999999999999646889999863
No 141
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=62.59 E-value=13 Score=29.09 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeCChh-hHHHHHHHHHccCCceEEEEeccC
Q 029806 38 TLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 38 ~L~~ll~~~~~~~~~~~k~IVF~~~~~-~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+.+.+..+- ..+..+++|+|.+-. .+...+..|...|+-++..|.|++
T Consensus 68 ~~~~~~~~~g--i~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 68 QLESLFGELG--HRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp HHHHHHHHHT--CCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHcC--CCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 3444454421 134678999998765 778888889998854688899985
No 142
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=62.48 E-value=14 Score=29.10 Aligned_cols=38 Identities=8% Similarity=0.085 Sum_probs=32.0
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHH-ccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVS-NLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~-~~~~i~~~~lhg~~ 88 (187)
.+.+++||||.+-.++...+..|. ..|+-++..+.|++
T Consensus 231 ~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 231 TKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 456889999999888888889998 88854688999986
No 143
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=62.13 E-value=22 Score=33.38 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=32.5
Q ss_pred CCcEEEEeCChhhHHHHHHHHHc----cCCceEEEEeccCCHHHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTL 95 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~----~~~i~~~~lhg~~~~~eR~~ 95 (187)
+.+++|.|+|+.-+...++++.. .| +.+..+.|+++.++|..
T Consensus 115 g~~vlVltPTreLA~Q~~e~~~~l~~~lg-l~v~~i~GG~~~~~r~~ 160 (853)
T 2fsf_A 115 GKGVHVVTVNDYLAQRDAENNRPLFEFLG-LTVGINLPGMPAPAKRE 160 (853)
T ss_dssp SSCCEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHH
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHH
Confidence 46899999999877666665543 46 79999999999876554
No 144
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.12 E-value=12 Score=30.63 Aligned_cols=93 Identities=15% Similarity=0.179 Sum_probs=54.9
Q ss_pred HHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHHHHHHHHhccccccccc
Q 029806 35 KMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQK 110 (187)
Q Consensus 35 Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~ 110 (187)
|... +.-++..+.. .....++||.++++.-+..+.+.+...+ .+.+..++|+.+.... ++.+..+
T Consensus 90 KT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------- 158 (414)
T 3eiq_A 90 KTATFAISILQQIEL-DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME------- 158 (414)
T ss_dssp SHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT-------
T ss_pred ccHHHHHHHHHHHhh-cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC-------
Confidence 4433 4444444222 2356789999999998888887776542 2577778887655443 3444434
Q ss_pred ccccCCCCCcCCCCCCceeEEEEecCCC-CcC-cCCCCCCCCCEEE
Q 029806 111 VTEQSGDESETGKDEHKSHMIVVTDACL-PLL-SSGESAISARVLI 154 (187)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~iLv~Td~~~-~~~-~rGlDi~~v~~VI 154 (187)
..+|+|+|.--+ ..+ ...++...+++||
T Consensus 159 ----------------~~~iiv~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 159 ----------------APHIIVGTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp ----------------CCSEEEECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred ----------------CCCEEEECHHHHHHHHHcCCcccccCcEEE
Confidence 378999995200 002 2234566677665
No 145
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=62.10 E-value=7.6 Score=29.77 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=33.3
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+.+++|+||.+-.++...+..|...| .++..+.|++.
T Consensus 182 ~~~~~iv~~C~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~ 219 (230)
T 2eg4_A 182 QPGQEVGVYCHSGARSAVAFFVLRSLG-VRARNYLGSMH 219 (230)
T ss_dssp CTTCEEEEECSSSHHHHHHHHHHHHTT-CEEEECSSHHH
T ss_pred CCCCCEEEEcCChHHHHHHHHHHHHcC-CCcEEecCcHH
Confidence 456899999999999999999999999 68999999863
No 146
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=60.48 E-value=12 Score=29.83 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+.+++|+||.+-.++...+..|...|+-++..+.|++.
T Consensus 238 ~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 238 DLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp CTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 456899999999888888999999888645888999863
No 147
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=60.15 E-value=5.8 Score=27.54 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=28.6
Q ss_pred CCcEEEEeCChhh---------HHHHHHHHHccCCceEEEEeccC
Q 029806 53 GLPMIVCCSSRDE---------LDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 53 ~~k~IVF~~~~~~---------~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
..++||||++-.. +.++...|...|+ ++..|.|++
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~ 126 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGL 126 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCH
Confidence 3789999988655 3567888888897 999999986
No 148
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=60.04 E-value=48 Score=26.52 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=40.5
Q ss_pred CCCcEEEEeCCh--------------hhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 52 PGLPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 52 ~~~k~IVF~~~~--------------~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
+.+-+|||+|.. ..++.|.+.|+.+|+ . +.++.+++.++-.+.+++|.+.
T Consensus 20 ~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF-~-V~~~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 20 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGF-E-VKCFNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp BCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTC-E-EEEEESCCHHHHHHHHHHHHHS
T ss_pred CcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCC-E-EEEecCCCHHHHHHHHHHHHhh
Confidence 346689988853 578999999999996 5 4567799999999999999653
No 149
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=59.75 E-value=17 Score=28.45 Aligned_cols=49 Identities=8% Similarity=-0.151 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeCCh-hhHHHHHHHHHccCCceEEEEeccC
Q 029806 38 TLVELLHLVVAGRRPGLPMIVCCSSR-DELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 38 ~L~~ll~~~~~~~~~~~k~IVF~~~~-~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.|.+.+..+- ..+..++||+|.+- ..+...+..|...|+-++..|.|++
T Consensus 64 ~~~~~~~~~g--i~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 113 (277)
T 3aay_A 64 QFSKLLSERG--IANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGR 113 (277)
T ss_dssp HHHHHHHHHT--CCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHH
T ss_pred HHHHHHHHcC--CCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCH
Confidence 3444454421 14567899999884 3567788888888854688999985
No 150
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=59.42 E-value=23 Score=33.23 Aligned_cols=40 Identities=3% Similarity=-0.012 Sum_probs=28.5
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETER 93 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~eR 93 (187)
..++||.++++.-+..+...+.+. + +.+..+||+.+...+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~G~~~~~~~ 339 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVS 339 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT-CCEEEECCC-----C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEECCcchhhH
Confidence 678999999998887777666553 5 799999999866554
No 151
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=57.82 E-value=54 Score=24.13 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 63 RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 63 ~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
...++.|.+.|..+|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 54 ~~D~~~L~~~f~~LgF-~V-~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 54 HLDAGALTTTFEELHF-EI-KPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp HHHHHHHHHHHHHTTC-EE-EEEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCC-EE-EEecCCCHHHHHHHHHHHHHh
Confidence 5678899999999996 54 678899999999999999664
No 152
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=57.47 E-value=22 Score=33.41 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=33.7
Q ss_pred CCcEEEEeCChhhHHHHHHHHHc----cCCceEEEEeccCCHHHHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~----~~~i~~~~lhg~~~~~eR~~~ 96 (187)
+.+++|.|.|+.-+...++++.. .| +.+..+.|+++.++|...
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~lg-l~v~~i~gg~~~~~r~~~ 170 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLG-LTVGLNLNSMSKDEKREA 170 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTSCHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHh
Confidence 46899999999888766666543 46 899999999998776543
No 153
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=57.14 E-value=13 Score=33.17 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=30.4
Q ss_pred CcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccCCHHH
Q 029806 54 LPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETE 92 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~~~~e 92 (187)
+++||.++++.-+....+.+.+. + +.+..++|+.+...
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~g~~~~~~ 103 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHG-YRVTGISGATAENV 103 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECSSSCSSS
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCC-ceEEEEeCCccccc
Confidence 78999999988888777776654 4 79999999986544
No 154
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=57.03 E-value=15 Score=31.03 Aligned_cols=51 Identities=14% Similarity=0.008 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+.|.+.+.... ..+..++|+||.+-.++...+..|...|+-.+..|.|++.
T Consensus 189 ~~l~~~~~~~g--i~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 189 EQLKAMLAKHG--IRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp HHHHHHHHHTT--CCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred HHHHHHHHHcC--CCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 34444554411 2456889999999888889999999888546889999863
No 155
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=56.95 E-value=13 Score=29.36 Aligned_cols=48 Identities=2% Similarity=-0.065 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCCCCcEEEEeCChh-hHHHHHHHHHccCCceEEEEeccC
Q 029806 39 LVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 39 L~~ll~~~~~~~~~~~k~IVF~~~~~-~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
+.+.+..+- ..+..++||||++-. .+...+..|...|+-++..|.|++
T Consensus 67 ~~~~~~~~g--i~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 115 (285)
T 1uar_A 67 FAKLMERLG--ISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGR 115 (285)
T ss_dssp HHHHHHHTT--CCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHcC--CCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 444454421 245688999998865 577888889888864688999985
No 156
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=56.61 E-value=21 Score=25.87 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=39.4
Q ss_pred CCcEEEEeC--------------ChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 53 GLPMIVCCS--------------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 53 ~~k~IVF~~--------------~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
.+.+|||.+ +...++.|.+.|..+|+ . +.++.+++.++-.+.+++|.+.
T Consensus 16 rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF-~-V~~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKY-E-VRNKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTC-E-EEEEESCCHHHHHHHHHHHHHS
T ss_pred ceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCC-E-EEEeeCCCHHHHHHHHHHHHHh
Confidence 467778766 34567899999999996 5 5677789999999999999874
No 157
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=55.78 E-value=40 Score=25.20 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=39.9
Q ss_pred CCcEEEEeCCh-----------hhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhc
Q 029806 53 GLPMIVCCSSR-----------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (187)
Q Consensus 53 ~~k~IVF~~~~-----------~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~ 102 (187)
.+.+|||.|.. ..++.|.+.|+.+|+ .+ .++.+++.++-.+.+++|..
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF-~V-~~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGY-SV-DVKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTC-EE-EEEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCC-EE-EEecCCCHHHHHHHHHHHHh
Confidence 46689998864 678899999999996 65 56788999999999999975
No 158
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=55.65 E-value=10 Score=30.55 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+.|.+++.... ..+.+++|+||.+-.++...+..|...|+-++..+.|++.
T Consensus 240 ~~l~~~~~~~~--~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 240 EEIRHLFQEKK--VDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp HHHHHHHHHTT--CCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHH
T ss_pred HHHHHHHHhcC--CCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 34555555411 2456899999999888888888899988546788888864
No 159
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=55.44 E-value=36 Score=27.70 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=40.5
Q ss_pred CcEEEEeCC-----------hhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhc
Q 029806 54 LPMIVCCSS-----------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (187)
Q Consensus 54 ~k~IVF~~~-----------~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~ 102 (187)
.-+|||+|. ...++.|.+.|+.+|+ . +.++.+++.++-.+.+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF-~-V~~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGY-S-VDVKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTC-E-EEEEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCC-E-EEEeeCCCHHHHHHHHHHHHh
Confidence 469999998 5678999999999996 5 457779999999999999975
No 160
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=53.78 E-value=32 Score=26.15 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeCChh-hHHHHHHHHHccCCceEEEEecc
Q 029806 38 TLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSD 87 (187)
Q Consensus 38 ~L~~ll~~~~~~~~~~~k~IVF~~~~~-~~~~l~~~L~~~~~i~~~~lhg~ 87 (187)
.+.+.+..+ ....+++|+|.+-. .+..++..|. .|+-++..|.|+
T Consensus 50 ~~~~~~~~l----~~~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 50 GLTELFQTL----GLRSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp HHHHHHHHT----TCCSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred HHHHHHHhc----CCCCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 344555552 22689999999877 7888889999 886458889988
No 161
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=53.65 E-value=71 Score=26.05 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=41.7
Q ss_pred CCCcEEEEeCC-------------hhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 52 PGLPMIVCCSS-------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 52 ~~~k~IVF~~~-------------~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
+.+-+|||.|. ...++.|.+.|+.+|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 59 ~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF-~V-~~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 59 HRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGF-KV-TVFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp BCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTC-EE-EEEESCCHHHHHHHHHHHHSS
T ss_pred CcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCC-EE-EEecCCCHHHHHHHHHHHHHh
Confidence 35779999875 6678899999999996 54 677799999999999999864
No 162
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=53.37 E-value=31 Score=25.09 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC
Q 029806 34 FKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA 77 (187)
Q Consensus 34 ~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~ 77 (187)
.+....++|+++... .+.+++|.|.+...++.|-+.|-...
T Consensus 23 ~~~~~aCrL~~ka~~---~G~rv~V~~~d~~~a~~LD~~LW~~~ 63 (150)
T 3sxu_A 23 AVEQLVCEIAAERWR---SGKRVLIACEDEKQAYRLDEALWARP 63 (150)
T ss_dssp HHHHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHH---cCCeEEEECCCHHHHHHHHHHHhCCC
Confidence 378889999987443 46899999999999999999997653
No 163
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=53.33 E-value=14 Score=27.06 Aligned_cols=66 Identities=9% Similarity=-0.053 Sum_probs=35.6
Q ss_pred EEEEccCcchHHHHHHHHHHHHhc---CCCCCCcEEEEeCChhhHHH-HHHHHHcc---CCceEEEEeccCCHH
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVA---GRRPGLPMIVCCSSRDELDA-VCSAVSNL---ADISFSSLHSDLAET 91 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~---~~~~~~k~IVF~~~~~~~~~-l~~~L~~~---~~i~~~~lhg~~~~~ 91 (187)
..+..+...-|......++..... ......++||.|+++.-++. +.+.+... + +.+..++|+.+..
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~-~~v~~~~g~~~~~ 123 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW-YRVIGLSGDTQLK 123 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTT-SCEEECCC---CC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccC-ceEEEEeCCcccc
Confidence 344444444455544433332111 01235799999999887766 54444432 4 5888899876544
No 164
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=53.14 E-value=42 Score=26.16 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=43.2
Q ss_pred eEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHHH
Q 029806 24 HFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERT 94 (187)
Q Consensus 24 ~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR~ 94 (187)
...+..+...-|.....-.+.. ...++||.++++.-+..+++.+.+.+ .+.+..++|+.+..+..
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILE------LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQI 100 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH------HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHh------hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHH
Confidence 3445555544466544333322 14789999999999888888887432 26889999998876543
No 165
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=52.92 E-value=45 Score=22.50 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=30.1
Q ss_pred CcEEEEe------CChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHH
Q 029806 54 LPMIVCC------SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 54 ~k~IVF~------~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
.+++||. ++...+....++|...| +....+.=+.++..|..+
T Consensus 16 ~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~g-i~y~~~di~~d~~~~~~l 63 (111)
T 3zyw_A 16 APCMLFMKGTPQEPRCGFSKQMVEILHKHN-IQFSSFDIFSDEEVRQGL 63 (111)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCCEEEEGGGCHHHHHHH
T ss_pred CCEEEEEecCCCCCcchhHHHHHHHHHHcC-CCeEEEECcCCHHHHHHH
Confidence 7999998 46778899999999887 666665544445444443
No 166
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=52.47 E-value=67 Score=25.18 Aligned_cols=48 Identities=6% Similarity=-0.126 Sum_probs=34.4
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCc-eEEEEeccCCHHHHHHHHHHHhcc
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADI-SFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i-~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
.+++.|++++.+.++|..+.|.+.++- ++..+ ...+++.++-+....+
T Consensus 26 d~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~---~~~~~~~~i~~~l~~~ 74 (227)
T 3gr1_A 26 DKMLYVAAQNERDTLWARQVLARGDYDKNARVI---NENEENKRISIWLDTY 74 (227)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEE---CHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCCcCCeEEE---ehHHHHHHHHHHHHhc
Confidence 477999999999999999999877521 44445 4456666655555554
No 167
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=52.17 E-value=49 Score=22.04 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=30.4
Q ss_pred CcEEEEeC------ChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHH
Q 029806 54 LPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 54 ~k~IVF~~------~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
.+++||.. ....+....++|...| +....+.=...+..+..+.
T Consensus 18 ~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~g-i~~~~~dI~~~~~~~~~l~ 66 (109)
T 3ipz_A 18 EKVVLFMKGTRDFPMCGFSNTVVQILKNLN-VPFEDVNILENEMLRQGLK 66 (109)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCCEEEEGGGCHHHHHHHH
T ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHHcC-CCcEEEECCCCHHHHHHHH
Confidence 78999987 4888999999999887 6666554444444444433
No 168
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=51.82 E-value=30 Score=32.74 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=33.2
Q ss_pred CCcEEEEeCChhhHHHHHHHHH----ccCCceEEEEeccCCHHHHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVS----NLADISFSSLHSDLAETERTLI 96 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~----~~~~i~~~~lhg~~~~~eR~~~ 96 (187)
+.+++|.|.|+.-+...++++. ..| +.+..+.|+++.++|...
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~lG-Lsv~~i~gg~~~~~r~~~ 198 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRFLG-LQVGVILATMTPDERRVA 198 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHHH
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHh
Confidence 4689999999987766665554 346 899999999998776543
No 169
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=51.20 E-value=64 Score=24.70 Aligned_cols=49 Identities=6% Similarity=-0.101 Sum_probs=33.5
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCc-eEEEEeccCCHHHHHHHHHHHhcc
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADI-SFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i-~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
..+++.|++++.+.++|..+.|.+.++- ++..+. ..+++.++-+....+
T Consensus 25 rD~~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi~---~~~e~~~i~~~L~~~ 74 (197)
T 3gr0_A 25 RDKMLYVAAQNERDTLWARQVLARGDYDKNARVIN---ENEENKRISIWLDTY 74 (197)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHHTCTTTEEEEC---HHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEccccHHHHHHHHHHhcCCCCCcEEee---hHHHHHHHHHHHHhc
Confidence 3477999999999999999999876521 444443 345555555555444
No 170
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=51.02 E-value=22 Score=29.65 Aligned_cols=37 Identities=8% Similarity=0.043 Sum_probs=28.3
Q ss_pred CCCCcEEEEe-CChhhH-HHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCC-SSRDEL-DAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~-~~~~~~-~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+..+++||| .+-... ...+..|...|+ ++..|.|++
T Consensus 93 ~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~ 131 (373)
T 1okg_A 93 AGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGF 131 (373)
T ss_dssp SSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTT
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCH
Confidence 4568899999 443233 477788888897 999999997
No 171
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=50.59 E-value=64 Score=25.60 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=40.9
Q ss_pred CCCcEEEEeCCh--------------hhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 52 PGLPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 52 ~~~k~IVF~~~~--------------~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
+.+-+|||.|.. ..++.|.+.|+.+|+ . +.++.+++.++-.+.+++|.+.
T Consensus 20 ~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF-~-V~~~~dlt~~em~~~l~~~~~~ 83 (277)
T 1nw9_B 20 PCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHF-M-VEVKGDLTAKKMVLALLELARQ 83 (277)
T ss_dssp SCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTE-E-EEEEESCCHHHHHHHHHHHHHS
T ss_pred cccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCC-E-EEEEcCCCHHHHHHHHHHHHHh
Confidence 457888887752 478899999999995 5 4677899999999999999864
No 172
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=49.95 E-value=14 Score=32.07 Aligned_cols=38 Identities=8% Similarity=-0.034 Sum_probs=33.5
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+.+++++||.+-.+....+..|...|+ ++..|.|++.
T Consensus 522 ~~~~~iv~~c~~g~rs~~a~~~l~~~G~-~v~~l~gG~~ 559 (565)
T 3ntd_A 522 PKDKEIIIFSQVGLRGNVAYRQLVNNGY-RARNLIGGYR 559 (565)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTC-CEEEETTHHH
T ss_pred CCcCeEEEEeCCchHHHHHHHHHHHcCC-CEEEEcChHH
Confidence 4567899999999999999999999997 9999999863
No 173
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=49.46 E-value=55 Score=21.73 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=65.3
Q ss_pred EEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHc-cCCceEEEEeccCCHHHHHHHHHHHhccc
Q 029806 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTA 104 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~-~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~ 104 (187)
.+.++++..-...+..+++. . +..+ ..+.+.. +....+.. .. ..+..+.-.|+...-.+.++.++...
T Consensus 18 ilivdd~~~~~~~l~~~L~~-----~-g~~v-~~~~~~~---~al~~l~~~~~-~dlvilD~~l~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 18 VTLVEDEPSHATLIQYHLNQ-----L-GAEV-TVHPSGS---AFFQHRSQLST-CDLLIVSDQLVDLSIFSLLDIVKEQT 86 (138)
T ss_dssp EEEECSCHHHHHHHHHHHHH-----T-TCEE-EEESSHH---HHHHTGGGGGS-CSEEEEETTCTTSCHHHHHHHHTTSS
T ss_pred EEEECCCHHHHHHHHHHHHH-----c-CCEE-EEeCCHH---HHHHHHHhCCC-CCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 45666666466677777776 1 1233 4444433 33344444 44 47788887777666677788877631
Q ss_pred ccccccccccCCCCCcCCCCCCceeEEEEe-cCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhccCCCCe
Q 029806 105 MKWNQKVTEQSGDESETGKDEHKSHMIVVT-DACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTS 178 (187)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~iLv~T-d~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~r~~g~ 178 (187)
....+++.| .. ..... .... ..-.+.-|.+.+.+.+++.++.++.|.
T Consensus 87 ---------------------~~~~ii~ls~~~----~~~~~-~~~~-~~~~l~KP~~~~~L~~~i~~~~~~~~~ 134 (138)
T 2b4a_A 87 ---------------------KQPSVLILTTGR----HELIE-SSEH-NLSYLQKPFAISELRAAIDYHKPSMGV 134 (138)
T ss_dssp ---------------------SCCEEEEEESCC------CCC-CSSS-CEEEEESSCCHHHHHHHHHHTCCC---
T ss_pred ---------------------CCCCEEEEECCC----CCHHH-HHHH-HHheeeCCCCHHHHHHHHHHHHHhcCC
Confidence 136777777 54 33332 2222 222234588999999999888555444
No 174
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=48.73 E-value=24 Score=28.06 Aligned_cols=49 Identities=8% Similarity=0.012 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeCC--hh-hHHHHHHHHHccCCceEEEEeccC
Q 029806 38 TLVELLHLVVAGRRPGLPMIVCCSS--RD-ELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 38 ~L~~ll~~~~~~~~~~~k~IVF~~~--~~-~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+.+.+..+- ..+..++||||.+ -. .+..++..|...|+-++..|.|++
T Consensus 79 ~~~~~l~~lg--i~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 130 (296)
T 1rhs_A 79 GFADYVGSLG--ISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGF 130 (296)
T ss_dssp HHHHHHHHTT--CCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHcC--CCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCH
Confidence 3444454421 2456789999987 33 467778888888854688999985
No 175
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=48.31 E-value=16 Score=29.73 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=32.2
Q ss_pred CCCCCcEEEEeCChhhHHHHHHHHHc-cCCceEEEEeccC
Q 029806 50 RRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDL 88 (187)
Q Consensus 50 ~~~~~k~IVF~~~~~~~~~l~~~L~~-~~~i~~~~lhg~~ 88 (187)
..+.+++|+||.+-.++...+..|.+ .|+-++..+.|++
T Consensus 256 l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~ 295 (318)
T 3hzu_A 256 INPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSW 295 (318)
T ss_dssp CCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHH
T ss_pred CCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcH
Confidence 34568999999999999999999986 7853588888885
No 176
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=48.11 E-value=6.7 Score=34.99 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=28.2
Q ss_pred CCcEEEEeCChhhHHHH-HHHHHccCC--ceEEEEeccCCHHHHH
Q 029806 53 GLPMIVCCSSRDELDAV-CSAVSNLAD--ISFSSLHSDLAETERT 94 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l-~~~L~~~~~--i~~~~lhg~~~~~eR~ 94 (187)
..++||.++++.-+..+ .+.|.+... +.+..++|+.+..++.
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~ 100 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISF 100 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHH
Confidence 37899999999877777 766655421 6999999998766544
No 177
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=47.73 E-value=39 Score=26.77 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 63 RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 63 ~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
...++.|.+.|+.+|+ . +.++.+++.++-.+.+++|.+.
T Consensus 43 ~~D~~~L~~~f~~LGF-~-V~~~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 43 NVDCENLTRVLKQLDF-E-VTVYKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp CCHHHHHHHHHHHTTC-E-EEEEEECSHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCC-E-EEEEeCCCHHHHHHHHHHHHHh
Confidence 3568899999999996 5 5677799999999999999864
No 178
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=47.64 E-value=43 Score=27.40 Aligned_cols=50 Identities=4% Similarity=-0.034 Sum_probs=42.0
Q ss_pred CCCcEEEEeCCh------------hhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 52 PGLPMIVCCSSR------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 52 ~~~k~IVF~~~~------------~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
+.+-+|||+|.. ..++.|.+.|+.+|+ . +.++.+++.++-.+.+++|.+.
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF-~-V~~~~dlt~~em~~~l~~f~~~ 121 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNF-T-IFPYGNVNQDQFFKLLTMVTSS 121 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTE-E-EEEECSCCHHHHHHHHHHHHTS
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCC-E-EEEccCCCHHHHHHHHHHHHHH
Confidence 457889998763 678899999999995 5 4678899999999999999864
No 179
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=47.34 E-value=27 Score=24.94 Aligned_cols=39 Identities=5% Similarity=0.015 Sum_probs=25.0
Q ss_pred CCCCcEEEEeC-ChhhHHHHHHHH--------HccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCS-SRDELDAVCSAV--------SNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~-~~~~~~~l~~~L--------~~~~~i~~~~lhg~~~ 89 (187)
.+..++||||. +-.+....+..| ...|+-++..|.|++.
T Consensus 83 ~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 83 KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp CSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 34578999998 544444444433 3467547889999974
No 180
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=46.84 E-value=45 Score=24.66 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=40.8
Q ss_pred CCCcEEEEeCCh--------------hhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhc
Q 029806 52 PGLPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 102 (187)
Q Consensus 52 ~~~k~IVF~~~~--------------~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~ 102 (187)
+.+.+|||.+.. ..++.|.+.|..+|+ . +.++.+++.++-.+.+++|..
T Consensus 32 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF-~-V~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 32 PRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGY-D-VHVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTE-E-EEEEESCCHHHHHHHHHHHHT
T ss_pred CceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCC-E-EEEeeCCCHHHHHHHHHHhhh
Confidence 468889998752 378899999999995 5 467889999999999999987
No 181
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=46.44 E-value=38 Score=32.31 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=34.0
Q ss_pred CCcEEEEeCChhhHHHHHHHH----HccCCceEEEEeccCCHHHHHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAV----SNLADISFSSLHSDLAETERTLIL 97 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L----~~~~~i~~~~lhg~~~~~eR~~~l 97 (187)
+.+++|.++|+.-+...++++ ...| +.+..+.|+++.++|....
T Consensus 120 G~qv~VvTPTreLA~Qdae~m~~l~~~lG-Lsv~~i~Gg~~~~~r~~ay 167 (997)
T 2ipc_A 120 GKGVHVVTVNDYLARRDAEWMGPVYRGLG-LSVGVIQHASTPAERRKAY 167 (997)
T ss_dssp CSCCEEEESSHHHHHHHHHHHHHHHHTTT-CCEEECCTTCCHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHc
Confidence 468999999998776655555 3446 8999999999988777653
No 182
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=46.07 E-value=1.4e+02 Score=25.72 Aligned_cols=103 Identities=10% Similarity=0.103 Sum_probs=58.3
Q ss_pred EEEccCcchHHH-HHHHHHHHHhcCC---CCCCcEEEEeCChhhHHHHHHHHHcc-------CCceEEEEeccCCHHHHH
Q 029806 26 YVAVDRLQFKME-TLVELLHLVVAGR---RPGLPMIVCCSSRDELDAVCSAVSNL-------ADISFSSLHSDLAETERT 94 (187)
Q Consensus 26 ~~~~~~~~~Kl~-~L~~ll~~~~~~~---~~~~k~IVF~~~~~~~~~l~~~L~~~-------~~i~~~~lhg~~~~~eR~ 94 (187)
.+..+...-|.. .+.-++..+.... ....++||.++++.-+..+++.+.+. ..+.+..++|+.+...
T Consensus 64 lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~-- 141 (579)
T 3sqw_A 64 IARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA-- 141 (579)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH--
T ss_pred EEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH--
Confidence 333444444654 3444444433211 22358999999999988888777652 1246777888765443
Q ss_pred HHHHHHhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCC-cCcC--CCCCCCCCEEE
Q 029806 95 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LLSS--GESAISARVLI 154 (187)
Q Consensus 95 ~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~-~~~r--GlDi~~v~~VI 154 (187)
.++.+..+ ..+|+|+|.--+. ++.+ ...+..+++||
T Consensus 142 -~~~~l~~~-----------------------~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lV 180 (579)
T 3sqw_A 142 -AMNKMNKL-----------------------RPNIVIATPGRLIDVLEKYSNKFFRFVDYKV 180 (579)
T ss_dssp -HHHHHHHH-----------------------CCSEEEECHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred -HHHHHhcC-----------------------CCCEEEECHHHHHHHHHhccccccccCCEEE
Confidence 34455444 2789999964100 0111 23556677765
No 183
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=45.81 E-value=55 Score=26.09 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=40.2
Q ss_pred CCcEEEEeCC-------------hhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 53 GLPMIVCCSS-------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 53 ~~k~IVF~~~-------------~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
.+-+|||.|. ...++.|.+.|+.+|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 32 rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF-~V-~~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 32 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGF-KV-TVFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTC-EE-EEEESCCHHHHHHHHHHHHTS
T ss_pred CCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCC-EE-EEecCcCHHHHHHHHHHHHHh
Confidence 3668888775 6678899999999996 54 677799999999999999864
No 184
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=44.84 E-value=65 Score=21.27 Aligned_cols=61 Identities=18% Similarity=0.364 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEeCCh--hhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 38 TLVELLHLVVAGRRPGLPMIVCCSSR--DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 38 ~L~~ll~~~~~~~~~~~k~IVF~~~~--~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
-++++++.. ...+++.+||+|.. ..+.+....-++.| +.--.|.+ .++++-.+-+++|.+.
T Consensus 39 dirdiiksm---kdngkplvvfvngasqndvnefqneakkeg-vsydvlks-tdpeeltqrvreflkt 101 (112)
T 2lnd_A 39 DIRDIIKSM---KDNGKPLVVFVNGASQNDVNEFQNEAKKEG-VSYDVLKS-TDPEELTQRVREFLKT 101 (112)
T ss_dssp HHHHHHHHH---TTCCSCEEEEECSCCHHHHHHHHHHHHHHT-CEEEEEEC-CCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH---HhcCCeEEEEecCcccccHHHHHHHHHhcC-cchhhhcc-CCHHHHHHHHHHHHHh
Confidence 355666552 24568999999854 44556666666667 56666665 5677778888888774
No 185
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=44.00 E-value=79 Score=26.68 Aligned_cols=62 Identities=2% Similarity=-0.019 Sum_probs=38.7
Q ss_pred cCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccCCHHHH
Q 029806 30 DRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETER 93 (187)
Q Consensus 30 ~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~~~~eR 93 (187)
+...-|......++..... ....+++|.|+++.-++.+.+.+.+.+ .+.+..++|+.+..++
T Consensus 136 ~tGsGKT~~~~~~~~~~~~--~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 200 (510)
T 2oca_A 136 PTSAGRSLIQALLARYYLE--NYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK 200 (510)
T ss_dssp CSTTTHHHHHHHHHHHHHH--HCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG
T ss_pred CCCCCHHHHHHHHHHHHHh--CCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc
Confidence 3333355554444433221 223599999999988888888887642 2468888888766553
No 186
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=43.72 E-value=30 Score=30.19 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=31.8
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
+..+++|||++-..+...+..|...|+-++..|.|++
T Consensus 62 ~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~ 98 (539)
T 1yt8_A 62 RDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGL 98 (539)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCH
Confidence 4689999999988888999999999965688999875
No 187
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=43.60 E-value=33 Score=28.78 Aligned_cols=58 Identities=3% Similarity=0.018 Sum_probs=42.4
Q ss_pred EEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCce-EEEEeccCC
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLA 89 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~-~~~lhg~~~ 89 (187)
..+..+...-|......++... +.++||.|+++.-+..+.+.+.+.+ +. +..+||+.+
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~~-~~~v~~~~g~~~ 169 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIFG-EEYVGEFSGRIK 169 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGGC-GGGEEEBSSSCB
T ss_pred EEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhCC-CcceEEECCCcC
Confidence 3444444444776666565552 4799999999999999999888877 68 999998764
No 188
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=43.48 E-value=75 Score=21.59 Aligned_cols=49 Identities=22% Similarity=0.303 Sum_probs=39.5
Q ss_pred CCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 50 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 50 ~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
.....+++|..|.+.-..++-+.+++.|+ +++.+--+.+..+ +++|++.
T Consensus 48 eknfekiliisndkqllkemlelisklgy-kvflllqdqdene----leefkrk 96 (134)
T 2lci_A 48 EKNFEKILIISNDKQLLKEMLELISKLGY-KVFLLLQDQDENE----LEEFKRK 96 (134)
T ss_dssp CCSCCCEEEEESCHHHHHHHHHHHHHHTC-CEEEEEECSCHHH----HHHHHHH
T ss_pred hcCcceEEEEcCcHHHHHHHHHHHHHhCc-eeEEEeecCchhH----HHHHHHH
Confidence 35567899999999999999999999995 8988888877766 5566553
No 189
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=43.21 E-value=46 Score=25.47 Aligned_cols=57 Identities=4% Similarity=0.021 Sum_probs=39.9
Q ss_pred EEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCce-EEEEeccC
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDL 88 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~-~~~lhg~~ 88 (187)
..+..+...-|......++... ..+++|+|+++.-++.+.+.+.+.+ +. +..++|+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~-~~~v~~~~g~~ 168 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIFG-EEYVGEFSGRI 168 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGGC-GGGEEEESSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhCC-CCeEEEEeCCC
Confidence 3344444444766666665551 4789999999988888888887766 67 88888764
No 190
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=42.76 E-value=42 Score=26.31 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=39.1
Q ss_pred CCcEEEEeCC--------------hhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 53 GLPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 53 ~~k~IVF~~~--------------~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
.+-+|||.|. ...++.|.+.|+++|+ . +.++.+++.++-.+.+++|.+.
T Consensus 16 rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF-~-V~~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKY-E-VRNKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTC-E-EEEEESCCHHHHHHHHHHHHTS
T ss_pred ccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCC-E-EEEEeCCCHHHHHHHHHHHHHh
Confidence 3567887773 3378899999999996 5 4577789999999999999875
No 191
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=42.26 E-value=52 Score=27.00 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 39 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 39 L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
+.+++........+.+++|++|.+-.++-.+.-.|...|+-.+..+.|+++
T Consensus 261 l~~~~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWs 311 (327)
T 3utn_X 261 LEKALKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWT 311 (327)
T ss_dssp HHHHHHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHH
T ss_pred HHHHHHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHH
Confidence 334444322234567899999999988887777787778434777777654
No 192
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=42.05 E-value=34 Score=27.37 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCCh---hhHHHHHHHHHccCCceEEEEeccC
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSSR---DELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~~---~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
..+.+.+..+.. .+..++||||.+. ..+.+++..|...|+-++..|.|++
T Consensus 93 ~~~~~~~~~lgi--~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~ 145 (302)
T 3olh_A 93 EHFAEYAGRLGV--GAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGL 145 (302)
T ss_dssp HHHHHHHHHTTC--CSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHHcCC--CCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCH
Confidence 345555655321 4567899999642 3477788888888864688899985
No 193
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=41.90 E-value=26 Score=29.49 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=32.4
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~ 88 (187)
.+.+++|+||.+-.++...+..|...|+-++..+.|++
T Consensus 356 ~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~ 393 (423)
T 2wlr_A 356 KPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGW 393 (423)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHH
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccH
Confidence 45688999999999999999999999954688898985
No 194
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=41.26 E-value=18 Score=30.19 Aligned_cols=38 Identities=13% Similarity=-0.030 Sum_probs=31.7
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 90 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~ 90 (187)
.+++|+||.+-.++...+..|...|+-++..+.|++..
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 283 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSE 283 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHH
Confidence 67899999998888888889988885358889998754
No 195
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=40.99 E-value=32 Score=29.67 Aligned_cols=76 Identities=11% Similarity=0.133 Sum_probs=47.8
Q ss_pred CCcEEEEeCChhhHHHHHHHHHcc-------CCceEEEEeccCCHHHHHHHHHHHhcccccccccccccCCCCCcCCCCC
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNL-------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 125 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~-------~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~~~~~~~~~~~ 125 (187)
..++||.++++.-+..+++.+.+. ..+.+..+.|+.+... .++.+..+
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~---------------------- 200 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKL---------------------- 200 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHH----------------------
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcC----------------------
Confidence 358999999999988888877652 1146778888865444 34455444
Q ss_pred CceeEEEEecCCCC-cCcC--CCCCCCCCEEE
Q 029806 126 HKSHMIVVTDACLP-LLSS--GESAISARVLI 154 (187)
Q Consensus 126 ~~~~iLv~Td~~~~-~~~r--GlDi~~v~~VI 154 (187)
..+|+|+|.--+- ++.+ ...+..+++||
T Consensus 201 -~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 231 (563)
T 3i5x_A 201 -RPNIVIATPGRLIDVLEKYSNKFFRFVDYKV 231 (563)
T ss_dssp -CCSEEEECHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred -CCCEEEECcHHHHHHHHhccccccccceEEE
Confidence 2789999975100 0111 23456677765
No 196
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=40.34 E-value=83 Score=21.22 Aligned_cols=112 Identities=9% Similarity=0.082 Sum_probs=66.6
Q ss_pred eEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 24 HFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 24 ~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
...+.++++..-...|..++... ....++..+.+...+-. .+.... ..+..+.-.|+...-.++++.++..
T Consensus 16 ~~iLivdd~~~~~~~l~~~L~~~-----~~~~~v~~~~~~~~a~~---~l~~~~-~dlii~d~~l~~~~g~~~~~~l~~~ 86 (152)
T 3eul_A 16 VRVVVGDDHPLFREGVVRALSLS-----GSVNVVGEADDGAAALE---LIKAHL-PDVALLDYRMPGMDGAQVAAAVRSY 86 (152)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHH-----SSEEEEEEESSHHHHHH---HHHHHC-CSEEEEETTCSSSCHHHHHHHHHHT
T ss_pred EEEEEEcCCHHHHHHHHHHHhhC-----CCeEEEEEeCCHHHHHH---HHHhcC-CCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 45566776665667788888771 11233435655544433 333334 4788888777777777788887764
Q ss_pred cccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcC-----CCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 104 AMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSS-----GESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~r-----GlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
. ....+++.|.. ... .+.. +++.++ .-|.+.+.+.+++-++
T Consensus 87 ~---------------------~~~~ii~~s~~----~~~~~~~~~~~~-g~~~~l--~Kp~~~~~l~~~i~~~ 132 (152)
T 3eul_A 87 E---------------------LPTRVLLISAH----DEPAIVYQALQQ-GAAGFL--LKDSTRTEIVKAVLDC 132 (152)
T ss_dssp T---------------------CSCEEEEEESC----CCHHHHHHHHHT-TCSEEE--ETTCCHHHHHHHHHHH
T ss_pred C---------------------CCCeEEEEEcc----CCHHHHHHHHHc-CCCEEE--ecCCCHHHHHHHHHHH
Confidence 2 13667777765 321 1221 233333 3588889998888776
No 197
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=40.31 E-value=48 Score=26.60 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=39.3
Q ss_pred CCcEEEEeCC--------------hhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 53 GLPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 53 ~~k~IVF~~~--------------~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
.+-+|||.|. ...++.|.+.|+.+|+ . +.++.+++.++-.+.+++|.+.
T Consensus 44 rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF-~-V~~~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 44 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKY-E-VRNKNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTC-E-EEEEESCCHHHHHHHHHHHHTS
T ss_pred CCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCC-E-EEEecCCCHHHHHHHHHHHHhh
Confidence 3677888652 3468899999999996 5 5678889999999999999864
No 198
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=40.03 E-value=1.4e+02 Score=23.64 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=38.2
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC---CceEEEEeccC
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDL 88 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~---~i~~~~lhg~~ 88 (187)
..+..+...-|... +.-++..+.. .....++||.++++.-+..+++.+.+.+ .+.+..++++.
T Consensus 47 ~lv~a~TGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 113 (395)
T 3pey_A 47 MIAQSQSGTGKTAAFSLTMLTRVNP-EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDS 113 (395)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCT-TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTS
T ss_pred EEEECCCCCcHHHHHHHHHHHHhcc-CCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCc
Confidence 34444444446654 3344444222 3356789999999998888888776532 24566666553
No 199
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=39.61 E-value=89 Score=21.34 Aligned_cols=51 Identities=16% Similarity=0.068 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeC------ChhhHHHHHHHHHccCCce-EEEEeccCCHHHHHHH
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCS------SRDELDAVCSAVSNLADIS-FSSLHSDLAETERTLI 96 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~------~~~~~~~l~~~L~~~~~i~-~~~lhg~~~~~eR~~~ 96 (187)
..+.++++. .+++||.. ..--+....++|...+ +. ...+.=+.+++.|..+
T Consensus 11 ~~v~~~i~~--------~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g-v~~~~~vdV~~d~~~~~~l 68 (118)
T 2wem_A 11 EQLDALVKK--------DKVVVFLKGTPEQPQCGFSNAVVQILRLHG-VRDYAAYNVLDDPELRQGI 68 (118)
T ss_dssp HHHHHHHHH--------SSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCCCEEEESSSCHHHHHHH
T ss_pred HHHHHHhcc--------CCEEEEEecCCCCCccHHHHHHHHHHHHcC-CCCCEEEEcCCCHHHHHHH
Confidence 345566666 79999988 4778899999999887 64 5555444455554443
No 200
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=39.16 E-value=78 Score=20.58 Aligned_cols=46 Identities=4% Similarity=0.012 Sum_probs=32.5
Q ss_pred CcEEEEe------CChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHH
Q 029806 54 LPMIVCC------SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 54 ~k~IVF~------~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
.+++||. +....+..+..+|...+ +....+.=+.++..+..+.+.+
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~-i~~~~vdi~~~~~~~~~l~~~~ 68 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTG-VEYETFDILEDEEVRQGLKAYS 68 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHT-CCCEEEEGGGCHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCC-CCeEEEECCCCHHHHHHHHHHH
Confidence 5799997 46678888999998887 6776666655555555554444
No 201
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=39.16 E-value=21 Score=30.45 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=32.9
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+.++++++|.+-.++...+..|...|+-++..+.|++.
T Consensus 425 ~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 425 PRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 456899999999999999999999988545888988863
No 202
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=38.60 E-value=30 Score=30.25 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=31.9
Q ss_pred CCCcEEEEeCChhhHHHHHHHHHccCCceEEEEec-cCC
Q 029806 52 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS-DLA 89 (187)
Q Consensus 52 ~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg-~~~ 89 (187)
+..+++|+|.+-.+....+.+|...|+ .+..|.| ++.
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~-~v~~l~G~G~~ 358 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGW-QVAVLDGLSEA 358 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTC-EEEEECSCCGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCC-eEEEecCCChH
Confidence 358999999998888888999999996 9999999 863
No 203
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=38.24 E-value=62 Score=22.89 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=21.9
Q ss_pred CcEEEE-e-CChhhHH----HHHHHHHccCC--ceEEEEeccCC
Q 029806 54 LPMIVC-C-SSRDELD----AVCSAVSNLAD--ISFSSLHSDLA 89 (187)
Q Consensus 54 ~k~IVF-~-~~~~~~~----~l~~~L~~~~~--i~~~~lhg~~~ 89 (187)
.++||| | .+-.+.. ++...|...|+ ..+..|.|++.
T Consensus 68 ~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 68 KELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHH
Confidence 445555 9 3433332 44477777783 37888999863
No 204
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=37.93 E-value=66 Score=23.98 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=39.1
Q ss_pred CCcEEEEeCC--------------hhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 53 GLPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 53 ~~k~IVF~~~--------------~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
.+.+|||.+. ...++.|.+.|..+|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 44 rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF-~V-~v~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 44 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF-DV-IVYNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp EEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTE-EE-EEEESCCHHHHHHHHHHHHTS
T ss_pred ceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCC-EE-EEEeCCCHHHHHHHHHHHHHh
Confidence 3678888763 3567899999999995 54 677789999999999999764
No 205
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=37.77 E-value=29 Score=30.34 Aligned_cols=38 Identities=3% Similarity=0.003 Sum_probs=32.8
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCC
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 89 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~ 89 (187)
.+.+++++||.+-.+....+..|...|+ .+..|.|++.
T Consensus 539 ~~~~~iv~~C~~g~rs~~a~~~l~~~G~-~v~~l~GG~~ 576 (588)
T 3ics_A 539 PVDKDIYITCQLGMRGYVAARMLMEKGY-KVKNVDGGFK 576 (588)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTC-CEEEETTHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCC-cEEEEcchHH
Confidence 4568899999999999999999999995 7888999863
No 206
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=36.06 E-value=92 Score=20.46 Aligned_cols=45 Identities=4% Similarity=0.016 Sum_probs=32.0
Q ss_pred CcEEEEeC------ChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHH
Q 029806 54 LPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 54 ~k~IVF~~------~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
.+++||.. ....+..+..+|...+ +....+.=+.+...|..+.+.
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~-i~~~~vdi~~~~~~~~~l~~~ 65 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTG-VEYETFDILEDEEVRQGLKTF 65 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTC-SCEEEEESSSCHHHHHHHHHH
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcC-CCeEEEECCCCHHHHHHHHHH
Confidence 67899976 5567888889998888 777777666655555554443
No 207
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=35.11 E-value=1e+02 Score=20.73 Aligned_cols=116 Identities=13% Similarity=0.200 Sum_probs=65.8
Q ss_pred EEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhccc
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 104 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~ 104 (187)
..+.++++..-...|..+++. ......+..+.+... ....+.... ..+..+.-.|+...-.++++.+++..
T Consensus 22 ~iLivdd~~~~~~~l~~~L~~-----~~~~~~v~~~~~~~~---al~~l~~~~-~dlii~D~~l~~~~g~~~~~~l~~~~ 92 (150)
T 4e7p_A 22 KVLVAEDQSMLRDAMCQLLTL-----QPDVESVLQAKNGQE---AIQLLEKES-VDIAILDVEMPVKTGLEVLEWIRSEK 92 (150)
T ss_dssp EEEEECSCHHHHHHHHHHHHT-----STTEEEEEEESSHHH---HHHHHTTSC-CSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred EEEEEcCCHHHHHHHHHHHHh-----CCCcEEEEEECCHHH---HHHHhhccC-CCEEEEeCCCCCCcHHHHHHHHHHhC
Confidence 455666665455667777765 112234445555433 334455555 47888888887777777888877642
Q ss_pred ccccccccccCCCCCcCCCCCCceeEEEEecCCCC-cCcCCCCCCCCCEEEEecCCCChhHHHHhhhhcc
Q 029806 105 MKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLP-LLSSGESAISARVLINYELPTKKETYIRRMTTCL 173 (187)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~-~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~~ 173 (187)
....+++.|...-. ...+.+.. +++-++. -|.+.+.+..++-++.
T Consensus 93 ---------------------~~~~ii~ls~~~~~~~~~~~~~~-g~~~~l~--Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 93 ---------------------LETKVVVVTTFKRAGYFERAVKA-GVDAYVL--KERSIADLMQTLHTVL 138 (150)
T ss_dssp ---------------------CSCEEEEEESCCCHHHHHHHHHT-TCSEEEE--TTSCHHHHHHHHHHHH
T ss_pred ---------------------CCCeEEEEeCCCCHHHHHHHHHC-CCcEEEe--cCCCHHHHHHHHHHHH
Confidence 13677777765100 01111221 2333332 4888899998887763
No 208
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=34.69 E-value=43 Score=23.52 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=32.6
Q ss_pred eCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHH
Q 029806 60 CSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 100 (187)
Q Consensus 60 ~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~F 100 (187)
|.+++.+..+..+|..+| |....+.=+++++.|....++.
T Consensus 13 c~~kk~c~~aK~lL~~kg-V~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 13 TAIKKKQQDVLGFLEANK-IGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCEEEEECTTCHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHCC-CceEEEECCCCHHHHHHHHHhc
Confidence 344566789999999988 8888888888899999888887
No 209
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=34.59 E-value=1.2e+02 Score=21.29 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeC------ChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHH
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 98 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~------~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~ 98 (187)
.+.+.+++.. .+++||+. ..-.+..+..+|...+ +....+.=+.++..|..+.+
T Consensus 25 ~~~v~~~i~~--------~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~g-v~y~~vdI~~d~~~~~~L~~ 84 (135)
T 2wci_A 25 IEKIQRQIAE--------NPILLYMKGSPKLPSCGFSAQAVQALAACG-ERFAYVDILQNPDIRAELPK 84 (135)
T ss_dssp HHHHHHHHHH--------CSEEEEESBCSSSBSSHHHHHHHHHHHTTC-SCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHHhcc--------CCEEEEEEecCCCCCCccHHHHHHHHHHcC-CceEEEECCCCHHHHHHHHH
Confidence 3455555555 68999977 5778899999999988 67777765555555554443
No 210
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=32.92 E-value=1.2e+02 Score=20.70 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=29.2
Q ss_pred CcEEEEeCC------hhhHHHHHHHHHccCCce---EEEEeccCCHHHHHHH
Q 029806 54 LPMIVCCSS------RDELDAVCSAVSNLADIS---FSSLHSDLAETERTLI 96 (187)
Q Consensus 54 ~k~IVF~~~------~~~~~~l~~~L~~~~~i~---~~~lhg~~~~~eR~~~ 96 (187)
.+++||..+ .--+....++|...| +. ...+.=..+.+.|..+
T Consensus 16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g-v~~~~~~~~dv~~~~~~~~~l 66 (121)
T 3gx8_A 16 APVVLFMKGTPEFPKCGFSRATIGLLGNQG-VDPAKFAAYNVLEDPELREGI 66 (121)
T ss_dssp CSEEEEESBCSSSBCTTHHHHHHHHHHHHT-BCGGGEEEEECTTCHHHHHHH
T ss_pred CCEEEEEeccCCCCCCccHHHHHHHHHHcC-CCcceEEEEEecCCHHHHHHH
Confidence 789999884 778888888998887 66 4445444445444443
No 211
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=32.23 E-value=31 Score=24.54 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=26.1
Q ss_pred CCCcE--EEEeC-ChhhHHHHHHHHHc----------cCCceEEEEeccCC
Q 029806 52 PGLPM--IVCCS-SRDELDAVCSAVSN----------LADISFSSLHSDLA 89 (187)
Q Consensus 52 ~~~k~--IVF~~-~~~~~~~l~~~L~~----------~~~i~~~~lhg~~~ 89 (187)
+.+++ |++|. +-.+....+..|.+ .|+-++..|.|++.
T Consensus 86 ~~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 86 DGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp TTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred CCCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 34565 45688 76677777777764 37547889999963
No 212
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=31.52 E-value=1.3e+02 Score=23.98 Aligned_cols=63 Identities=5% Similarity=-0.005 Sum_probs=36.2
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccC----CceEEEEeccC
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDL 88 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~----~i~~~~lhg~~ 88 (187)
..+..+...-|... +..++..+.. .....++||.++++.-+..+++.+...+ .+.+....++.
T Consensus 67 ~lv~apTGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 134 (412)
T 3fht_A 67 LIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 134 (412)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTC
T ss_pred EEEECCCCchHHHHHHHHHHHHhhh-cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCc
Confidence 33444444446543 4445554222 2344588999999988888877666532 24566666654
No 213
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=31.26 E-value=81 Score=28.25 Aligned_cols=64 Identities=6% Similarity=0.138 Sum_probs=42.3
Q ss_pred EEEEccCcchHHHHH-HHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHc---cCCceEEEEeccCCHHH
Q 029806 25 FYVAVDRLQFKMETL-VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETE 92 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L-~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~---~~~i~~~~lhg~~~~~e 92 (187)
..+..+...-|.... .-+++.+.. .+.++++.++++.-+..+++.++. .| +.+..++|+.+...
T Consensus 42 ~lv~apTGsGKT~~~~l~il~~~~~---~~~~~l~i~P~raLa~q~~~~~~~l~~~g-~~v~~~~G~~~~~~ 109 (720)
T 2zj8_A 42 ALISIPTASGKTLIAEIAMVHRILT---QGGKAVYIVPLKALAEEKFQEFQDWEKIG-LRVAMATGDYDSKD 109 (720)
T ss_dssp EEEECCGGGCHHHHHHHHHHHHHHH---HCSEEEEECSSGGGHHHHHHHTGGGGGGT-CCEEEECSCSSCCC
T ss_pred EEEEcCCccHHHHHHHHHHHHHHHh---CCCEEEEEcCcHHHHHHHHHHHHHHHhcC-CEEEEecCCCCccc
Confidence 444444444465433 444444321 147999999999999999988853 35 79999999876544
No 214
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=29.86 E-value=1.6e+02 Score=22.62 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeC-----ChhhHHHHHHHHHccCCceEEEEecc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSD 87 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~-----~~~~~~~l~~~L~~~~~i~~~~lhg~ 87 (187)
|+....++... -..++++||+| |..+..++.+.....+ +++..+-..
T Consensus 148 ~i~~~lki~~e-----l~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~-i~vL~IE~~ 199 (220)
T 3s5u_A 148 KVMEITQVHRY-----LSKKKLLIFINACTYLTEDEVQQVVEYISLNN-VDVLFLEQR 199 (220)
T ss_dssp HHHHHHHHHHH-----CTTCCEEEEESGGGGCCHHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred HHHHHHHHHHH-----hcCCCEEEEEChHHhCCHHHHHHHHHHHHHhC-CeEEEEecc
Confidence 44555555555 44599999999 6678889999888877 788888766
No 215
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=29.46 E-value=82 Score=28.11 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=40.3
Q ss_pred EEEEccCcchHHHHH-HHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHc---cCCceEEEEeccCCHH
Q 029806 25 FYVAVDRLQFKMETL-VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAET 91 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L-~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~---~~~i~~~~lhg~~~~~ 91 (187)
..+..+...-|.... .-+++.+. .+.++++.++++.-+...++.++. .| +++..++|+....
T Consensus 43 ~lv~apTGsGKT~~~~l~il~~~~----~~~~~l~i~P~r~La~q~~~~~~~~~~~g-~~v~~~~G~~~~~ 108 (702)
T 2p6r_A 43 LLLAMPTAAGKTLLAEMAMVREAI----KGGKSLYVVPLRALAGEKYESFKKWEKIG-LRIGISTGDYESR 108 (702)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHHTTTTTTT-CCEEEECSSCBCC
T ss_pred EEEEcCCccHHHHHHHHHHHHHHH----hCCcEEEEeCcHHHHHHHHHHHHHHHhcC-CEEEEEeCCCCcc
Confidence 344444444465443 33444422 247999999999989888888743 24 6899999986543
No 216
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=29.45 E-value=1.3e+02 Score=20.02 Aligned_cols=120 Identities=12% Similarity=0.047 Sum_probs=69.4
Q ss_pred CCCceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHH
Q 029806 20 SQPRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 20 ~~i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
..-....+.++++..-...|..+++.. ..-.+..+.+....+..+.+.. .. ..+..+.-.|+...-.++++.
T Consensus 17 ~~~~~~ilivdd~~~~~~~l~~~L~~~-----g~~~v~~~~~~~~~~~~~~~~~--~~-~dlvi~D~~l~~~~g~~~~~~ 88 (146)
T 4dad_A 17 FQGMINILVASEDASRLAHLARLVGDA-----GRYRVTRTVGRAAQIVQRTDGL--DA-FDILMIDGAALDTAELAAIEK 88 (146)
T ss_dssp CGGGCEEEEECSCHHHHHHHHHHHHHH-----CSCEEEEECCCHHHHTTCHHHH--TT-CSEEEEECTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhC-----CCeEEEEeCCHHHHHHHHHhcC--CC-CCEEEEeCCCCCccHHHHHHH
Confidence 333445666776665667778888771 1245655554443433332210 33 478888888888888888888
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCC--CCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGE--SAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGl--Di~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
++... ....+++.|.. ..... ..-.....-.+.-|.+.+.+..++.++
T Consensus 89 l~~~~---------------------~~~~ii~lt~~----~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~ 138 (146)
T 4dad_A 89 LSRLH---------------------PGLTCLLVTTD----ASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRA 138 (146)
T ss_dssp HHHHC---------------------TTCEEEEEESC----CCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHH
T ss_pred HHHhC---------------------CCCcEEEEeCC----CCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHH
Confidence 87642 13667777765 22110 001111222234588899999888776
No 217
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=28.42 E-value=1.6e+02 Score=22.94 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeC-----ChhhHHHHHHHHHccCCceEEEEecc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSD 87 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~-----~~~~~~~l~~~L~~~~~i~~~~lhg~ 87 (187)
|+....++... -..++++||+| |..+..++.+.....+ +++..+-..
T Consensus 148 ki~~~lki~~e-----l~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~-i~vLlIE~~ 199 (229)
T 3qhq_A 148 KCFEIIQVYHY-----LTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQ-KSVLFLEPR 199 (229)
T ss_dssp HHHHHHHHHHH-----CTTCCEEEEESCGGGCCHHHHHHHHHHHHHHC-SCEEEEESS
T ss_pred HHHHHHHHHHH-----hcCCCEEEEEChHHhCCHHHHHHHHHHHHHhC-CeEEEEecc
Confidence 55555555555 44599999999 6678888988888777 788888765
No 218
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=27.23 E-value=57 Score=24.56 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=25.7
Q ss_pred CCCcE--EEEeC-ChhhHHHHHHHHHc----------cCCceEEEEeccC
Q 029806 52 PGLPM--IVCCS-SRDELDAVCSAVSN----------LADISFSSLHSDL 88 (187)
Q Consensus 52 ~~~k~--IVF~~-~~~~~~~l~~~L~~----------~~~i~~~~lhg~~ 88 (187)
+..++ |+||. +-......+..|.. .|+-++..|.|++
T Consensus 108 ~d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~ 157 (211)
T 1qb0_A 108 LDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 157 (211)
T ss_dssp TTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHH
Confidence 34666 66798 66666666777664 4754688999985
No 219
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=27.21 E-value=3e+02 Score=23.66 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=49.9
Q ss_pred ceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEecc--C------C----
Q 029806 23 RHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSD--L------A---- 89 (187)
Q Consensus 23 ~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lhg~--~------~---- 89 (187)
.+...-+.... |.-++..+++. ...+++|.|.+...++.++..|+.. +. .+..+-.. + +
T Consensus 16 ~~~l~g~~gs~-ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~-~v~~fp~~e~lpyd~~~p~~~~ 87 (483)
T 3hjh_A 16 QRLLGELTGAA-CATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFSPHQDI 87 (483)
T ss_dssp EEEEECCCTTH-HHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSS-CEEECCCCCSCTTCSSCCCHHH
T ss_pred eEEEeCCCchH-HHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCC-cEEEEeCcccccccccCCChHH
Confidence 34444555555 88888888876 1368999999999999999999864 32 33333221 1 1
Q ss_pred HHHHHHHHHHHhcc
Q 029806 90 ETERTLILEEFRHT 103 (187)
Q Consensus 90 ~~eR~~~l~~Fr~~ 103 (187)
..+|.+++.+...+
T Consensus 88 ~~~Rl~~l~~L~~~ 101 (483)
T 3hjh_A 88 ISSRLSTLYQLPTM 101 (483)
T ss_dssp HHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhC
Confidence 35688888888776
No 220
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=26.74 E-value=1.3e+02 Score=26.75 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=40.7
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEe
Q 029806 31 RLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLH 85 (187)
Q Consensus 31 ~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lh 85 (187)
+.--|..++..++..+.. .+.+++|.+.|...++.+.+.|...+ .++..+.
T Consensus 214 PGTGKT~ti~~~I~~l~~---~~~~ILv~a~TN~AvD~i~erL~~~~-~~ilRlG 264 (646)
T 4b3f_X 214 PGTGKTTTVVEIILQAVK---QGLKVLCCAPSNIAVDNLVERLALCK-QRILRLG 264 (646)
T ss_dssp TTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHHHTT-CCEEECS
T ss_pred CCCCHHHHHHHHHHHHHh---CCCeEEEEcCchHHHHHHHHHHHhcC-CceEEec
Confidence 444599999998887654 35799999999999999999998776 4666653
No 221
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=26.38 E-value=34 Score=19.67 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=17.9
Q ss_pred EeccCCHHHHHHHHHHHhcc
Q 029806 84 LHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 84 lhg~~~~~eR~~~l~~Fr~~ 103 (187)
-||+|+..+.++..+.|-+-
T Consensus 4 ~hG~MD~~~hE~Ty~gFi~~ 23 (43)
T 1qle_D 4 KHGEMDIRHQQATFAGFIKG 23 (43)
T ss_dssp CTTCSCCHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHH
Confidence 48999999999999999875
No 222
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=26.27 E-value=1.7e+02 Score=20.43 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHH---ccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 35 KMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS---NLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 35 Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~---~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
-.+.+.+++.. -|..-++|.+.+ +.-+|+.+.+. .+| +.++.++..-+...|.+..++|+..
T Consensus 64 frenireiwer-----ypqldvvvivtt-ddkewikdfieeakerg-vevfvvynnkdddrrkeaqqefrsd 128 (162)
T 2l82_A 64 FRENIREIWER-----YPQLDVVVIVTT-DDKEWIKDFIEEAKERG-VEVFVVYNNKDDDRRKEAQQEFRSD 128 (162)
T ss_dssp HHHHHHHHHHH-----CTTCCEEEEEEC-CCHHHHHHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHh-----CCCCcEEEEEec-CcHHHHHHHHHHHHhcC-cEEEEEecCCCchhHHHHHHHhhhc
Confidence 34456677766 333455555544 34567776664 456 7999999999999999999999986
No 223
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=26.18 E-value=98 Score=25.11 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=39.8
Q ss_pred CCcEEEEeCC--------------hhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcc
Q 029806 53 GLPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 103 (187)
Q Consensus 53 ~~k~IVF~~~--------------~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~ 103 (187)
.+-+|||.|. ...++.|.+.|+.+|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 69 rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF-~V-~~~~dlt~~em~~~l~~~~~~ 131 (305)
T 1f1j_A 69 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF-DV-IVYNDCSCAKMQDLLKKASEE 131 (305)
T ss_dssp EEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTE-EE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCC-EE-EEecCcCHHHHHHHHHHHHHh
Confidence 4678998874 3578899999999995 54 677789999999999999764
No 224
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=26.05 E-value=1.4e+02 Score=24.85 Aligned_cols=63 Identities=5% Similarity=-0.006 Sum_probs=35.5
Q ss_pred EEEEccCcchHHHH-HHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc----CCceEEEEeccC
Q 029806 25 FYVAVDRLQFKMET-LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDL 88 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~-L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~----~~i~~~~lhg~~ 88 (187)
..+..+...-|... +..++..+.. .....++||.++++.-+..+++.+... +.+.+....++.
T Consensus 134 ~l~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~ 201 (479)
T 3fmp_B 134 LIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 201 (479)
T ss_dssp EEEECCSSSSHHHHHHHHHHTTCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTC
T ss_pred EEEEcCCCCchhHHHHHHHHHHHhh-cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCc
Confidence 34444444446654 4445544222 233448999999998888876665542 224555555543
No 225
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=25.92 E-value=1.9e+02 Score=26.40 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=25.4
Q ss_pred CCCCcEEEEeCChhhHHHHHHHHHc-cCCceEEEEeccCCHH
Q 029806 51 RPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAET 91 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l~~~L~~-~~~i~~~~lhg~~~~~ 91 (187)
...+++||.|+.. .+..+...+.+ .+.+.+..+||.....
T Consensus 284 ~~~~~~LIV~P~s-ll~qW~~E~~~~~p~~~v~~~~g~~~~r 324 (800)
T 3mwy_W 284 RQNGPHIIVVPLS-TMPAWLDTFEKWAPDLNCICYMGNQKSR 324 (800)
T ss_dssp SCCSCEEEECCTT-THHHHHHHHHHHSTTCCEEECCCSSHHH
T ss_pred CCCCCEEEEECch-HHHHHHHHHHHHCCCceEEEEeCCHHHH
Confidence 4467899999954 55544444443 3346888888875433
No 226
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=25.09 E-value=2.4e+02 Score=21.86 Aligned_cols=40 Identities=8% Similarity=0.214 Sum_probs=31.7
Q ss_pred CCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHH
Q 029806 53 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER 93 (187)
Q Consensus 53 ~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR 93 (187)
+.++++.-.+.+.++++.+.+...|. ++..+..+++..+-
T Consensus 31 Ga~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~~~~ 70 (254)
T 4fn4_A 31 DSIVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSKKKD 70 (254)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHH
Confidence 45777777788888999999988884 89999999875544
No 227
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=25.07 E-value=67 Score=27.83 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccccccccccccC
Q 029806 36 METLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 115 (187)
Q Consensus 36 l~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~~~~~~~~~~~ 115 (187)
+..|.++++. .+.+++|.|.+..+.+.|.+.|...+ +.+...... . .+..
T Consensus 371 ~~~L~~~~~~------~~~rVvi~a~s~~r~erL~~~L~~~~-i~~~~~~~~-~---------~~~~------------- 420 (483)
T 3hjh_A 371 LDALRKFLET------FDGPVVFSVESEGRREALGELLARIK-IAPQRIMRL-D---------EASD------------- 420 (483)
T ss_dssp THHHHHHHHH------CCSCEEEEESCSSTTTTTHHHHGGGT-CCCEECSCG-G---------GCCT-------------
T ss_pred HHHHHHHHHh------CCCeEEEEeCChHHHHHHHHHHHHcC-CCceecCch-h---------hcCC-------------
Confidence 3455555543 13689999999999999999999887 665443221 0 1111
Q ss_pred CCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEec
Q 029806 116 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 157 (187)
Q Consensus 116 ~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd 157 (187)
..+.|+.-- +..|..+|+..++|.-+
T Consensus 421 ------------g~v~i~~g~----L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 421 ------------RGRYLMIGA----AEHGFVDTVRNLALICE 446 (483)
T ss_dssp ------------TCEEEEESC----CCSCEEETTTTEEEEEH
T ss_pred ------------CcEEEEEcc----cccCcccCCCCEEEEEc
Confidence 345555566 89999999988877654
No 228
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=24.10 E-value=19 Score=25.42 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=23.9
Q ss_pred CCCCcEEEEeCChhhHHHH------HHHHH--ccCCceEEEEeccC
Q 029806 51 RPGLPMIVCCSSRDELDAV------CSAVS--NLADISFSSLHSDL 88 (187)
Q Consensus 51 ~~~~k~IVF~~~~~~~~~l------~~~L~--~~~~i~~~~lhg~~ 88 (187)
.+..++||||++-...... +..|. ..|+-++..|.|++
T Consensus 76 ~~~~~iVvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~ 121 (153)
T 2vsw_A 76 DCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGF 121 (153)
T ss_dssp CTTSEEEEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHH
T ss_pred CCCCeEEEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChH
Confidence 3467899999875443222 33343 22644788999996
No 229
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=23.94 E-value=2.7e+02 Score=24.52 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=42.5
Q ss_pred EEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEec
Q 029806 27 VAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS 86 (187)
Q Consensus 27 ~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg 86 (187)
+.-+...-|..++..++..+.. .++.+++|.+.|...++.+.+.|.+.| +.+..+.+
T Consensus 200 i~GppGTGKT~~~~~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~~-~~~~R~~~ 256 (624)
T 2gk6_A 200 IQGPPGTGKTVTSATIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQTG-LKVVRLCA 256 (624)
T ss_dssp EECCTTSCHHHHHHHHHHHHHT--SSSCCEEEEESSHHHHHHHHHHHHTTT-CCEEECCC
T ss_pred EECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCcHHHHHHHHHHHHhcC-CeEEeecc
Confidence 3334444588888888877553 356899999999999999999998776 56655543
No 230
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}
Probab=23.47 E-value=45 Score=25.64 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=23.9
Q ss_pred EEEEeC-ChhhHHHHHHHHHcc----------CCceEEEEeccC
Q 029806 56 MIVCCS-SRDELDAVCSAVSNL----------ADISFSSLHSDL 88 (187)
Q Consensus 56 ~IVF~~-~~~~~~~l~~~L~~~----------~~i~~~~lhg~~ 88 (187)
+|++|. +-.+....+..|... |+-.+..|.|++
T Consensus 127 VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~ 170 (216)
T 3op3_A 127 IVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGY 170 (216)
T ss_dssp EEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred EEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcH
Confidence 889999 777777777777654 555789999995
No 231
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=23.36 E-value=1.6e+02 Score=22.65 Aligned_cols=35 Identities=0% Similarity=-0.015 Sum_probs=20.9
Q ss_pred CcEEEEeCChhhHHHHHHHHHccCC---ceEEEEeccC
Q 029806 54 LPMIVCCSSRDELDAVCSAVSNLAD---ISFSSLHSDL 88 (187)
Q Consensus 54 ~k~IVF~~~~~~~~~l~~~L~~~~~---i~~~~lhg~~ 88 (187)
++++|.++++.-++.+.+.+.+.+. ..+..++++.
T Consensus 158 ~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~ 195 (282)
T 1rif_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGA 195 (282)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTC
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCC
Confidence 4777777777766666666655431 2455555554
No 232
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=23.08 E-value=1.8e+02 Score=19.67 Aligned_cols=113 Identities=14% Similarity=0.212 Sum_probs=63.9
Q ss_pred CceEEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc--CCceEEEEeccCCHHHHHHHHHH
Q 029806 22 PRHFYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEE 99 (187)
Q Consensus 22 i~~~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~--~~i~~~~lhg~~~~~eR~~~l~~ 99 (187)
-....+.++++..-...|..+++. . +-.++-.+.+...+-. .+... . ..+..+.-.|+...-.++++.
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~-----~-g~~v~~~~~~~~~al~---~l~~~~~~-~dliilD~~l~~~~g~~~~~~ 104 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTS-----E-GFNIIDTAADGEEAVI---KYKNHYPN-IDIVTLXITMPKMDGITCLSN 104 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHH-----T-TCEEEEEESSHHHHHH---HHHHHGGG-CCEEEECSSCSSSCHHHHHHH
T ss_pred CceEEEEEeCCHHHHHHHHHHHHh-----C-CCeEEEEECCHHHHHH---HHHhcCCC-CCEEEEeccCCCccHHHHHHH
Confidence 334566677766566777777776 1 2345424555444333 23322 2 367888877777677777777
Q ss_pred HhcccccccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcC-----CCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 100 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSS-----GESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 100 Fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~r-----GlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
++... ....+++.|.. ... .+.. +++.++ .-|.+.+.+..++-++
T Consensus 105 lr~~~---------------------~~~~ii~ls~~----~~~~~~~~~~~~-g~~~~l--~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 105 IMEFD---------------------KNARVIMISAL----GKEQLVKDCLIK-GAKTFI--VKPLDRAKVLQRVMSV 154 (157)
T ss_dssp HHHHC---------------------TTCCEEEEESC----CCHHHHHHHHHT-TCSEEE--ESSCCHHHHHHHHHHT
T ss_pred HHhhC---------------------CCCcEEEEecc----CcHHHHHHHHHc-CCCEEE--eCCCCHHHHHHHHHHH
Confidence 77641 13667777764 221 1111 133333 3477888888877665
No 233
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=22.82 E-value=1.9e+02 Score=19.86 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEeCC------hhhHHHHHHHHHccCCce-EEEEeccCCHHHHHHHHHHHhc
Q 029806 37 ETLVELLHLVVAGRRPGLPMIVCCSS------RDELDAVCSAVSNLADIS-FSSLHSDLAETERTLILEEFRH 102 (187)
Q Consensus 37 ~~L~~ll~~~~~~~~~~~k~IVF~~~------~~~~~~l~~~L~~~~~i~-~~~lhg~~~~~eR~~~l~~Fr~ 102 (187)
+.+.++++. .+++||..+ .--+....+.|...+ +. ...+.=...++ .++.+.++..
T Consensus 11 e~i~~~i~~--------~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~g-v~~~~~~~v~~~~~-~r~~l~~~sg 73 (118)
T 2wul_A 11 EQLDALVKK--------DKVVVFLKGTPEQPQCGFSNAVVQILRLHG-VRDYAAYNVLDDPE-LRQGIKDYSN 73 (118)
T ss_dssp HHHHHHHHH--------SSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCSCEEEETTSCHH-HHHHHHHHHT
T ss_pred HHHHHHHhc--------CCEEEEEcCCCCCCCCHHHHHHHHHHHHhC-CcCeEeecccCCHH-HHHHHHHhcc
Confidence 345666766 899999653 455677777787776 42 33333333344 4444555544
No 234
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=21.84 E-value=1.8e+02 Score=19.09 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=60.1
Q ss_pred EEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHccCCceEEEEeccCCHHHHHHHHHHHhcccc
Q 029806 26 YVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAM 105 (187)
Q Consensus 26 ~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~~~i~~~~lhg~~~~~eR~~~l~~Fr~~~~ 105 (187)
.+.++++..-...+..+++.. .+..++-.+.+... ....+.... ..+..+.-.|+...-.+.++..+...
T Consensus 12 iLivdd~~~~~~~l~~~L~~~-----~~~~~v~~~~~~~~---al~~l~~~~-~dlvi~d~~l~~~~g~~~~~~l~~~~- 81 (143)
T 2qv0_A 12 VIIVEDEFLAQQELSWLINTH-----SQMEIVGSFDDGLD---VLKFLQHNK-VDAIFLDINIPSLDGVLLAQNISQFA- 81 (143)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----SCCEEEEEESCHHH---HHHHHHHCC-CSEEEECSSCSSSCHHHHHHHHTTST-
T ss_pred EEEEcCCHHHHHHHHHHHHhC-----CCceEEEEeCCHHH---HHHHHHhCC-CCEEEEecCCCCCCHHHHHHHHHccC-
Confidence 455666554566777777761 12233323444333 333444444 47888887777666677777777642
Q ss_pred cccccccccCCCCCcCCCCCCceeEEEEecCCCCcCcCCCCCCCCCEEEEecCCCChhHHHHhhhhc
Q 029806 106 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 172 (187)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~iLv~Td~~~~~~~rGlDi~~v~~VI~yd~P~~~~~y~~R~GR~ 172 (187)
....+++.|... ....+.+. .++.-++ .-|.+.+.+.+++.++
T Consensus 82 --------------------~~~~ii~~s~~~-~~~~~~~~-~g~~~~l--~KP~~~~~l~~~i~~~ 124 (143)
T 2qv0_A 82 --------------------HKPFIVFITAWK-EHAVEAFE-LEAFDYI--LKPYQESRIINMLQKL 124 (143)
T ss_dssp --------------------TCCEEEEEESCC-TTHHHHHH-TTCSEEE--ESSCCHHHHHHHHHHH
T ss_pred --------------------CCceEEEEeCCH-HHHHHHHh-CCcceEE--eCCCCHHHHHHHHHHH
Confidence 124566666541 01111222 1233333 3488888888777665
No 235
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A
Probab=21.66 E-value=65 Score=23.17 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=24.0
Q ss_pred CCCcEEE--EeC-ChhhHHHHHHHHHc----------cCCceEEEEeccC
Q 029806 52 PGLPMIV--CCS-SRDELDAVCSAVSN----------LADISFSSLHSDL 88 (187)
Q Consensus 52 ~~~k~IV--F~~-~~~~~~~l~~~L~~----------~~~i~~~~lhg~~ 88 (187)
+.++++| +|. +-......+..|.+ .|+-++..|.|++
T Consensus 88 ~~~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~ 137 (175)
T 2a2k_A 88 LDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 137 (175)
T ss_dssp --CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred CCCCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCH
Confidence 3466655 487 66666677777764 3754788999985
No 236
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=21.39 E-value=4.3e+02 Score=23.47 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=50.6
Q ss_pred EEEEccCcchHHHHHHHHHHHHhcCCCCCCcEEEEeCChhhHHHHHHHHHcc-CCceEEEEe------------------
Q 029806 25 FYVAVDRLQFKMETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLH------------------ 85 (187)
Q Consensus 25 ~~~~~~~~~~Kl~~L~~ll~~~~~~~~~~~k~IVF~~~~~~~~~l~~~L~~~-~~i~~~~lh------------------ 85 (187)
...-+.... |.-++..+++.. ..++||.+++...+..++..|... +.-.+..+-
T Consensus 32 ~l~g~tgs~-kt~~~a~~~~~~------~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~ 104 (664)
T 1c4o_A 32 TLLGATGTG-KTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLY 104 (664)
T ss_dssp EEEECTTSC-HHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEE
T ss_pred EEEcCCCcH-HHHHHHHHHHHh------CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhh
Confidence 344556655 888888888762 258999999999999999999875 321233322
Q ss_pred --ccC--C---HHHHHHHHHHHhcc
Q 029806 86 --SDL--A---ETERTLILEEFRHT 103 (187)
Q Consensus 86 --g~~--~---~~eR~~~l~~Fr~~ 103 (187)
... + ...|.+++.+...+
T Consensus 105 ~~~~~~~~~~i~~~R~~~l~~L~~~ 129 (664)
T 1c4o_A 105 IEKDASINPEIERLRHSTTRSLLTR 129 (664)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHC
T ss_pred hhhhcccCHHHHHHHHHHHHHHHhC
Confidence 222 2 66888999998765
No 237
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*
Probab=20.91 E-value=29 Score=25.43 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=21.5
Q ss_pred CcEEEEeCCh-hh----HHHHHHHHHccC--CceEEEEeccCC
Q 029806 54 LPMIVCCSSR-DE----LDAVCSAVSNLA--DISFSSLHSDLA 89 (187)
Q Consensus 54 ~k~IVF~~~~-~~----~~~l~~~L~~~~--~i~~~~lhg~~~ 89 (187)
.++||+|.+- .+ +.++...|...| +.++..|.|++.
T Consensus 105 ~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~ 147 (169)
T 3f4a_A 105 LNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFS 147 (169)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHH
T ss_pred CeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHH
Confidence 5889999862 22 233433333333 347889999963
Done!