BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029808
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LTT3|HMG10_ARATH High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10
PE=2 SV=1
Length = 319
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 92/135 (68%), Gaps = 3/135 (2%)
Query: 37 AKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDR 96
AKY+D+ ++S LFW L AF KVPTVGG LDLHRLF+EVTSRGG+ +V++DR
Sbjct: 34 AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93
Query: 97 RWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRKEAPSSSMPDAVSG-SSLDN 155
+WKEV+ F+FPTTITSASFVLRKYYL L+ E VYY E P SS+ SL N
Sbjct: 94 KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYL--EKPVSSLQSTDEALKSLAN 151
Query: 156 GSASPEEGSTINQLG 170
S +PEEG Q+G
Sbjct: 152 ESPNPEEGIDEPQVG 166
>sp|Q9LG02|HMG11_ARATH Putative high mobility group B protein 11 OS=Arabidopsis thaliana
GN=HMGB11 PE=3 SV=2
Length = 337
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 82/105 (78%), Gaps = 2/105 (1%)
Query: 39 YEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRW 98
Y+DI ++ +LFW L FH+S KFK+P VGGK+LDLHRLF EVTSRGGL KVI+DRR
Sbjct: 30 YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89
Query: 99 KEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRKEAPSSS 143
KEV+ FNF TTIT+++FVLRK YL +L+ FE +YYF +AP S+
Sbjct: 90 KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF--QAPLST 132
>sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15
PE=2 SV=1
Length = 448
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 82/130 (63%), Gaps = 2/130 (1%)
Query: 35 PTAKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIR 94
P A YE + LF +LE H G KF VP +GG+ LDLH+LFVEVTSRGG+ K++
Sbjct: 21 PEATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILN 80
Query: 95 DRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRK--EAPSSSMPDAVSGSS 152
+RRWKEV F FP T T+AS+VLRKYY SLL ++EQ+Y+FR + P SM +
Sbjct: 81 ERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSARPC 140
Query: 153 LDNGSASPEE 162
G+ P +
Sbjct: 141 FIQGAIRPSQ 150
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9
PE=2 SV=1
Length = 338
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 75/109 (68%)
Query: 32 YPPPTAKYEDIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGK 91
YP P A +E + + S +FW TL FH KF +P +GGK LDLH L+VEVT RGG K
Sbjct: 27 YPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGYEK 86
Query: 92 VIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRKEAP 140
V+ +++W+EV VF F T TSASFVLRK+YL+LL+H+EQV+ F P
Sbjct: 87 VVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGP 135
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens
GN=ARID2 PE=1 SV=2
Length = 1835
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 6/106 (5%)
Query: 34 PPTAKYEDIAQSSDLFWATLEAFHKSFGDKFK-VPTVGGKALDLHRLFVEVTSRGGLGKV 92
PP + + +A F L FH S G FK +P VGGK LDLH L+ VT+ GG KV
Sbjct: 9 PPDERRKGLA-----FLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKV 63
Query: 93 IRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRKE 138
+W E+V FNFP + ++A+F L++YYL L +E+V++F ++
Sbjct: 64 SEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHFGED 109
>sp|Q6GQD7|ARI3A_XENLA AT-rich interactive domain-containing protein 3A OS=Xenopus laevis
GN=arid3a PE=2 SV=1
Length = 539
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 65 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 124
++P + + LDL+ L+V VT +GGL +VI + W+E+ N PT+ITSA+F LR Y+
Sbjct: 232 RIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMK 291
Query: 125 LLYHFE 130
LY +E
Sbjct: 292 YLYPYE 297
>sp|Q5XGD9|ARI3A_XENTR AT-rich interactive domain-containing protein 3A OS=Xenopus
tropicalis GN=arid3a PE=2 SV=1
Length = 541
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 65 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 124
++P + + LDL+ L+V VT +GGL +VI + W+E+ N PT+ITSA+F LR Y+
Sbjct: 235 RIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMK 294
Query: 125 LLYHFE 130
LY +E
Sbjct: 295 YLYPYE 300
>sp|Q99856|ARI3A_HUMAN AT-rich interactive domain-containing protein 3A OS=Homo sapiens
GN=ARID3A PE=1 SV=2
Length = 593
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 65 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 124
++P + + LDL L+V VT +GGL +VI + W+E+ N PT+ITSA+F LR Y+
Sbjct: 261 RIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMK 320
Query: 125 LLYHFE 130
LY +E
Sbjct: 321 YLYPYE 326
>sp|A6PWV5|ARI3C_MOUSE AT-rich interactive domain-containing protein 3C OS=Mus musculus
GN=Arid3c PE=2 SV=2
Length = 409
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 47 DLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVF 105
DLF +F + G +VP + + LDL+ LF VT++GGL +VI + W+EV
Sbjct: 119 DLF-----SFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGL 173
Query: 106 NFPTTITSASFVLRKYYLSLLYHFE 130
+ PTTITSA+F LR Y+ LY +E
Sbjct: 174 SLPTTITSAAFTLRTQYMKYLYPYE 198
>sp|Q62431|ARI3A_MOUSE AT-rich interactive domain-containing protein 3A OS=Mus musculus
GN=Arid3a PE=1 SV=1
Length = 601
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 65 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 124
++P + + LDL L+V VT +GGL +VI + W+E+ N PT+ITSA+F LR Y+
Sbjct: 266 RIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMK 325
Query: 125 LLYHFE 130
LY +E
Sbjct: 326 YLYPYE 331
>sp|A6NKF2|ARI3C_HUMAN AT-rich interactive domain-containing protein 3C OS=Homo sapiens
GN=ARID3C PE=2 SV=1
Length = 412
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 49 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 107
F L +F + G +VP + + LDL+ LF VT++GGL +VI + W+EV +
Sbjct: 119 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 178
Query: 108 PTTITSASFVLRKYYLSLLYHFE 130
PTTITSA+F LR Y+ LY +E
Sbjct: 179 PTTITSAAFTLRTQYMKYLYPYE 201
>sp|A2BEA6|ARI3A_DANRE AT-rich interactive domain-containing protein 3A OS=Danio rerio
GN=arid3a PE=1 SV=1
Length = 570
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 49 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 107
F L +F + G ++P + + LDL+ L+ VT +GGL +VI + W+E+ N
Sbjct: 238 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNL 297
Query: 108 PTTITSASFVLRKYYLSLLYHFE 130
PT+ITSA+F LR Y+ LY +E
Sbjct: 298 PTSITSAAFTLRTQYMKYLYPYE 320
>sp|Q4H3P5|DRI_CIOIN Protein dead ringer homolog OS=Ciona intestinalis GN=Ci-DRIL1/2
PE=2 SV=1
Length = 571
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 17 SNSNSNNNNSKASSYYPPPTAKYE---DIAQSSDLFWATLEAFHKSFGDKF-KVPTVGGK 72
S +NS N + + +Y YE DI + F L +F + G ++P + +
Sbjct: 222 SQTNSCNGSQQEWTYEEQFKQLYEIDDDIKRKE--FLDDLFSFMQKRGTPVNRIPIMAKQ 279
Query: 73 ALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFE 130
LDL++L+ V +GGL +VI + W+E+ N P++ITSA+F LR Y+ LY FE
Sbjct: 280 VLDLYQLYRLVVEKGGLVEVINKKIWREITKGLNLPSSITSAAFTLRTQYMKYLYPFE 337
>sp|Q9Z1N7|ARI3B_MOUSE AT-rich interactive domain-containing protein 3B OS=Mus musculus
GN=Arid3b PE=2 SV=1
Length = 568
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 65 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 124
++P + + LDL+ L+ VT +GGL ++I + W+E+ N PT+ITSA+F LR Y+
Sbjct: 236 RIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMK 295
Query: 125 LLYHFE 130
LY +E
Sbjct: 296 YLYAYE 301
>sp|Q8IVW6|ARI3B_HUMAN AT-rich interactive domain-containing protein 3B OS=Homo sapiens
GN=ARID3B PE=1 SV=2
Length = 561
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 65 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 124
++P + + LDL+ L+ VT +GGL ++I + W+E+ N PT+ITSA+F LR Y+
Sbjct: 238 RIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMK 297
Query: 125 LLYHFE 130
LY +E
Sbjct: 298 YLYAYE 303
>sp|Q8MQH7|DRI_STRPU Protein dead ringer homolog OS=Strongylocentrotus purpuratus GN=dri
PE=2 SV=1
Length = 490
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 65 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 124
++P + + LDL+ L+ V ++GGL +VI ++W+E+ N P +ITSA+F LR Y+
Sbjct: 225 RIPIMAKQVLDLYELYNLVVAKGGLVEVINKKQWREITKGLNLPASITSAAFTLRTQYMK 284
Query: 125 LLYHFE 130
LY +E
Sbjct: 285 YLYPYE 290
>sp|Q24573|DRI_DROME Protein dead ringer OS=Drosophila melanogaster GN=retn PE=1 SV=2
Length = 911
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 49 FWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNF 107
F L +F + G ++P + LDL+ L+ V +RGGL VI + W+E++ +
Sbjct: 299 FLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHL 358
Query: 108 PTTITSASFVLRKYYLSLLYHFE 130
P++ITSA+F LR Y+ LY +E
Sbjct: 359 PSSITSAAFTLRTQYMKYLYPYE 381
>sp|O02326|CFI1_CAEEL AT-rich interactive domain-containing protein cfi-1
OS=Caenorhabditis elegans GN=cfi-1 PE=1 SV=3
Length = 467
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 65 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 124
++P + + LDL+ L+ V GGL ++I + W+E+ N P++ITSA+F LR Y
Sbjct: 204 RIPIMAKQVLDLYELYRLVVQHGGLVEIINKKLWREITKGLNLPSSITSAAFTLRTQYQK 263
Query: 125 LLYHFE 130
LY +E
Sbjct: 264 YLYDYE 269
>sp|A2BH40|ARI1A_MOUSE AT-rich interactive domain-containing protein 1A OS=Mus musculus
GN=Arid1a PE=1 SV=1
Length = 2283
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 66 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 125
+P VG K LDL+RL+V V GGL +V ++++W+E+ N T +SA+ L+K Y+
Sbjct: 1042 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNV-GTSSSAASSLKKQYIQC 1100
Query: 126 LYHFE 130
LY FE
Sbjct: 1101 LYAFE 1105
>sp|O14497|ARI1A_HUMAN AT-rich interactive domain-containing protein 1A OS=Homo sapiens
GN=ARID1A PE=1 SV=3
Length = 2285
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 66 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 125
+P VG K LDL+RL+V V GGL +V ++++W+E+ N T +SA+ L+K Y+
Sbjct: 1041 LPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNV-GTSSSAASSLKKQYIQC 1099
Query: 126 LYHFE 130
LY FE
Sbjct: 1100 LYAFE 1104
>sp|Q8NFD5|ARI1B_HUMAN AT-rich interactive domain-containing protein 1B OS=Homo sapiens
GN=ARID1B PE=1 SV=2
Length = 2236
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 66 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 125
+P VG K LDL RL+V V GGL +V ++++W+E+ N T +SA+ L+K Y+
Sbjct: 1077 LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNV-GTSSSAASSLKKQYIQY 1135
Query: 126 LYHFEQVYYFRKEAP 140
L+ FE +E P
Sbjct: 1136 LFAFECKIERGEEPP 1150
>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila melanogaster GN=osa PE=1
SV=1
Length = 2716
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 66 VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 125
PT+ + LDL+RL++ V RGG +V + + WK++ + +SA++ LRK+Y
Sbjct: 1024 CPTISKQPLDLYRLYIYVKERGGFVEVTKSKTWKDIAGLLGI-GASSSAAYTLRKHYTKN 1082
Query: 126 LYHFE 130
L FE
Sbjct: 1083 LLTFE 1087
>sp|C0SUW7|ARID6_ARATH AT-rich interactive domain-containing protein 6 OS=Arabidopsis
thaliana GN=ARID6 PE=2 SV=1
Length = 398
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 49 FWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFP 108
F +EAF+K +FK P G+ L++ +L+ V + GG V ++ W++V FN P
Sbjct: 112 FLREVEAFYKESFLEFKPPKFYGQPLNILKLWRAVVNLGGYEVVTTNKLWRQVGESFNPP 171
Query: 109 TTITSASFVLRKYYLSLLYHFEQV 132
T T+ S+ R +Y L +E+
Sbjct: 172 KTCTTVSYTFRNFYEKALLEYEKC 195
>sp|Q0WNR6|ARID5_ARATH AT-rich interactive domain-containing protein 5 OS=Arabidopsis
thaliana GN=ARID5 PE=2 SV=1
Length = 434
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 44 QSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVV 103
Q + F +EAF+K +FK P G+ L+ +L+ V GG V + W++V
Sbjct: 143 QDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGYDVVTTSKLWRQVGE 202
Query: 104 VFNFPTTITSASFVLRKYYLSLLYHFEQ 131
F+ P T T+ S+ R +Y L +E+
Sbjct: 203 SFHPPKTCTTVSWTFRIFYEKALLEYEK 230
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2
Length = 1548
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 61 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120
G K+P V K LDL+ L V GG + +DRRW V N+P+ S +LR
Sbjct: 97 GSSLKIPNVERKILDLYSLNKIVMEEGGYEAICKDRRWARVAQRLNYPSGKNIGS-LLRS 155
Query: 121 YYLSLLYHFE 130
+Y ++Y +E
Sbjct: 156 HYERIIYPYE 165
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid
PE=1 SV=1
Length = 1838
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 49 FWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFP 108
F + F + G K+P V KALDL+ L V GG+ + +DR+W +V +P
Sbjct: 232 FLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYP 291
Query: 109 TTITSASFVLRKYYLSLLYHFE 130
++ S L+ +Y +L+ FE
Sbjct: 292 SS-KSVGATLKAHYERILHPFE 312
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2
SV=1
Length = 1545
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 61 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120
G K+P V + LDL+ L V GG + +DRRW V N+P S +LR
Sbjct: 97 GSSLKIPNVERRILDLYSLSKIVMEEGGYEAICKDRRWARVAQRLNYPAGKNIGS-LLRS 155
Query: 121 YYLSLLYHFE 130
+Y ++Y +E
Sbjct: 156 HYERIIYPYE 165
>sp|P41230|KDM5C_MOUSE Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4
Length = 1554
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 61 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120
G K+P V + LDL+ L V GG + +DRRW V N+P S +LR
Sbjct: 97 GSSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGS-LLRS 155
Query: 121 YYLSLLYHFE 130
+Y ++Y +E
Sbjct: 156 HYERIVYPYE 165
>sp|P41229|KDM5C_HUMAN Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2
Length = 1560
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 61 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120
G K+P V + LDL+ L V GG + +DRRW V N+P S +LR
Sbjct: 97 GSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGS-LLRS 155
Query: 121 YYLSLLYHFE 130
+Y ++Y +E
Sbjct: 156 HYERIVYPYE 165
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2
SV=1
Length = 1556
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 61 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120
G K+P V + LDL+ L V GG + +DRRW V N+P S +LR
Sbjct: 97 GSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGS-LLRS 155
Query: 121 YYLSLLYHFE 130
+Y ++Y +E
Sbjct: 156 HYERIVYPYE 165
>sp|Q940Y3|ARID3_ARATH AT-rich interactive domain-containing protein 3 OS=Arabidopsis
thaliana GN=ARID3 PE=2 SV=1
Length = 786
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 49 FWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFP 108
F L++F + FK P G+ L+ +L+ VT GG KV + W++V F P
Sbjct: 500 FMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTGSKLWRQVGESFRPP 559
Query: 109 TTITSASFVLRKYYLSLLYHFEQ 131
T T+ S+ R +Y L +E+
Sbjct: 560 KTCTTVSWTFRGFYEKALLEYER 582
>sp|Q5XUN4|KDM5D_PANTR Lysine-specific demethylase 5D OS=Pan troglodytes GN=KDM5D PE=2
SV=1
Length = 1535
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 61 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120
G K+P V K LDL+ L V GG + +DRRW V ++P S +LR
Sbjct: 97 GSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPGKNIGS-LLRS 155
Query: 121 YYLSLLYHFE 130
+Y ++Y +E
Sbjct: 156 HYERIIYPYE 165
>sp|Q9BY66|KDM5D_HUMAN Lysine-specific demethylase 5D OS=Homo sapiens GN=KDM5D PE=1 SV=2
Length = 1539
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 61 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120
G K+P V K LDL+ L V GG + +DRRW V ++P S +LR
Sbjct: 97 GSSLKIPNVERKILDLYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPGKNIGS-LLRS 155
Query: 121 YYLSLLYHFE 130
+Y ++Y +E
Sbjct: 156 HYERIIYPYE 165
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3
Length = 1690
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 49 FWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFP 108
F L F + G K+P V K LDL+ L V S+GG V ++++W +V +
Sbjct: 90 FLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYL 149
Query: 109 TTITSASFVLRKYYLSLLYHFE----QVYYFRKEAPSSSMPDAVSGSSLDNGS-ASPEEG 163
+ S +L+ +Y +LY +E V + P+ + + V L + SPE G
Sbjct: 150 PGKGTGS-LLKSHYERILYPYELFQSGVSLMGVQMPNLDLKEKVEPEVLSTDTQTSPEPG 208
Query: 164 STINQL 169
+ +N L
Sbjct: 209 TRMNIL 214
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2
Length = 1690
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 49 FWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFP 108
F L F + G K+P V K LDL+ L V S+GG V ++++W +V +
Sbjct: 90 FLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEIVTKEKKWSKVGSRLGYL 149
Query: 109 TTITSASFVLRKYYLSLLYHFE----QVYYFRKEAPSSSMPDAVSGSSLDNG-SASPEEG 163
+ S +L+ +Y +LY +E V + P + + V L SPE G
Sbjct: 150 PGKGTGS-LLKSHYERILYPYELFQSGVSLMGVQMPDLDLKEKVEAEVLSTDIQPSPERG 208
Query: 164 STIN 167
+ +N
Sbjct: 209 TRMN 212
>sp|Q09441|YP83_CAEEL ARID domain-containing protein C08B11.3 OS=Caenorhabditis elegans
GN=C08B11.3 PE=4 SV=1
Length = 1244
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 35 PTAKYEDIAQSSDLFWATLEAFHKS-FGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVI 93
P K +A+ F+ +L F+K + K+P V G ++L+RL+ V + GG KV
Sbjct: 20 PPEKQRKMAE----FYNSLRMFYKRRWNATLKLPHVQGVEVNLYRLYDTVMALGGWQKVA 75
Query: 94 RDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQV 132
+W ++ +F I ++ Y+ L FEQV
Sbjct: 76 ASDKWSDIAEMFGCKDDILCGDHAIKIIYMRYLSKFEQV 114
>sp|E1BLP6|ARI5B_BOVIN AT-rich interactive domain-containing protein 5B OS=Bos taurus
GN=ARID5B PE=3 SV=1
Length = 1173
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 1/126 (0%)
Query: 16 NSNSNSNNNNSKASSYYPPPTAKYEDIAQSSDLFWATLEAFHKSFGDKF-KVPTVGGKAL 74
N N++NN K S+ P A E+ F L + K ++P +G K +
Sbjct: 295 NKPKNNHNNCKKVSNEEKPKVAIGEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQI 354
Query: 75 DLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYY 134
+L +F GG + R+WK + TSA+ R++Y L+ +E+
Sbjct: 355 NLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIK 414
Query: 135 FRKEAP 140
++ P
Sbjct: 415 GEEDKP 420
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2
Length = 1503
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 61 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120
G K+P V K LDL++L V GG V R+RRW ++ + F S LR
Sbjct: 98 GCTLKIPHVERKILDLYQLNKLVADEGGFDLVCRERRWTKIAMTMGFAPGKAVGSH-LRA 156
Query: 121 YYLSLLYHF 129
+Y +LY +
Sbjct: 157 HYERILYPY 165
>sp|E2R9X2|ARI5B_CANFA AT-rich interactive domain-containing protein 5B OS=Canis
familiaris GN=ARID5B PE=3 SV=1
Length = 1187
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 20 NSNNNNSKASSYYPPPTAKYEDIAQSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHR 78
N++NN K S+ P A E+ F L + K ++P +G K ++L
Sbjct: 296 NNHNNCKKVSNEEKPKVAIGEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWT 355
Query: 79 LFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRKE 138
+F GG + R+WK + TSA+ R++Y L+ +E+ ++
Sbjct: 356 MFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEED 415
Query: 139 AP 140
P
Sbjct: 416 KP 417
>sp|Q8BM75|ARI5B_MOUSE AT-rich interactive domain-containing protein 5B OS=Mus musculus
GN=Arid5b PE=1 SV=3
Length = 1188
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 6 LNGQKSSATSNSNSNSNNNNSKASSYYPPPTAKYEDIAQSSDLFWATLEAFHKSFGDKF- 64
+ G+ SA + +N +NN K S+ P + E+ F L + K
Sbjct: 283 VKGEARSALTKPKNN-HNNCKKTSNEEKPKLSIGEECRADEQAFLVALYKYMKERKTPIE 341
Query: 65 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 124
++P +G K ++L +F GG + R+WK + TSA+ R++Y
Sbjct: 342 RIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYER 401
Query: 125 LLYHFEQVYYFRKEAP 140
L+ +E+ ++ P
Sbjct: 402 LILPYERFIKGEEDKP 417
>sp|Q14865|ARI5B_HUMAN AT-rich interactive domain-containing protein 5B OS=Homo sapiens
GN=ARID5B PE=1 SV=3
Length = 1188
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 22 NNNNSKASSYYPPPTAKYEDIAQSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLF 80
N+N K S+ P A E+ F L + K ++P +G K ++L +F
Sbjct: 297 NHNCKKVSNEEKPKVAIGEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMF 356
Query: 81 VEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRKEAP 140
GG + R+WK + TSA+ R++Y L+ +E+ ++ P
Sbjct: 357 QAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKP 416
>sp|P29374|ARI4A_HUMAN AT-rich interactive domain-containing protein 4A OS=Homo sapiens
GN=ARID4A PE=1 SV=3
Length = 1257
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 47 DLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVF 105
D F L F + G K P +G K L+L +LF V +GG + WK++ +
Sbjct: 313 DNFLQQLYKFMEDRGTPINKPPVLGYKDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYMDL 372
Query: 106 NFPTTITSASFVLRKYYLSLLYHFEQ 131
P ++AS+ ++ Y LY FE+
Sbjct: 373 GIPILNSAASYNVKTAYRKYLYGFEE 398
>sp|Q03214|ECM5_YEAST Protein ECM5 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=ECM5 PE=1 SV=1
Length = 1411
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 49 FWATLEAFHKSFGDKF--KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFN 106
F+A L FH ++P++ + LDL+RL V RGG V + W ++
Sbjct: 191 FYAKLYNFHNKIKKSTLTRIPSIDKRTLDLYRLRSCVKLRGGFNAVCEKKLWAQIGRELG 250
Query: 107 FPTTITSA-SFVLRKYYLSLLYHFE 130
+ I S+ S LR Y +L F+
Sbjct: 251 YSGRIMSSLSTSLRSAYAKILLDFD 275
>sp|Q5ZJ69|ARI5B_CHICK AT-rich interactive domain-containing protein 5B OS=Gallus gallus
GN=ARID5B PE=2 SV=1
Length = 1185
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 9/167 (5%)
Query: 6 LNGQKSSATSNSNSNSNNNNSKASSYYPPPTAKYEDIAQSSDLFWATLEAFHKSFGDKF- 64
+ + SA SN N+N K SS A E+ F L + K
Sbjct: 285 VKCEAKSALPKPKSN-NSNCKKGSSEDKSKIAVGEECRADEQAFLVALYKYMKERKTPIE 343
Query: 65 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 124
++P +G K ++L +F GG + R+WK + TSA+ R++Y
Sbjct: 344 RIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYER 403
Query: 125 LLYHFEQVYYFRKEAPSSSMPDAVSGSSLDNGSASPEEGSTINQLGG 171
L+ +E+ ++ P +P V DN S +EG ++ G
Sbjct: 404 LILPYERFIKGEEDKP---LP-PVKPRKQDNSS---QEGEAKTKVSG 443
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1
Length = 1544
Score = 37.0 bits (84), Expect = 0.075, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 61 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120
G K+P V K LDL +L V GG V +DR+W ++ F S + R
Sbjct: 115 GSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHI-RG 173
Query: 121 YYLSLL 126
+Y +L
Sbjct: 174 HYERIL 179
>sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3
Length = 1544
Score = 37.0 bits (84), Expect = 0.075, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 61 GDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120
G K+P V K LDL +L V GG V +DR+W ++ F S + R
Sbjct: 115 GSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHI-RG 173
Query: 121 YYLSLL 126
+Y +L
Sbjct: 174 HYERIL 179
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1
Length = 1522
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 49 FWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFP 108
F + F + G K+P V K LDL +L V GG V ++R+W ++ F
Sbjct: 81 FLDQIAKFWELQGCTLKIPHVERKILDLFQLNRLVAEEGGFDVVCKERKWTKIATRMGFA 140
Query: 109 TTITSASFVLRKYYLSLLYHF 129
S + R +Y +LY +
Sbjct: 141 PGKAVGSHI-RAHYERILYPY 160
>sp|Q84JT7|ARID1_ARATH AT-rich interactive domain-containing protein 1 OS=Arabidopsis
thaliana GN=ARID1 PE=2 SV=1
Length = 562
Score = 36.6 bits (83), Expect = 0.094, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 21 SNNNNSKASSYYPPPTAKYEDIAQSSDLFWATLEAFHKSF--GDKF-KVP--TVGGKALD 75
S + N S P T + I + LF L++F F D F +P T G+ +D
Sbjct: 21 SLDANRSPESVNPESTGFEKKIKELISLFRPLLDSFLAEFCSADGFLPLPAMTGEGRTVD 80
Query: 76 LHRLFVEVTSRGGLGKVIRDRRWKEVV 102
L LF+ VT +GG V + W EVV
Sbjct: 81 LFNLFLNVTHKGGFDAVSENGSWDEVV 107
>sp|Q62315|JARD2_MOUSE Protein Jumonji OS=Mus musculus GN=Jarid2 PE=1 SV=1
Length = 1234
Score = 36.6 bits (83), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 65 KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 124
++P +GG LDL F + GG+ +V ++W ++ + P T L++ Y
Sbjct: 642 ELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQ 701
Query: 125 LLYHFE 130
L ++
Sbjct: 702 YLLSYD 707
>sp|O74365|SOL1_SCHPO SWI/SNF chromatin-remodeling complex subunit sol1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sol1 PE=1 SV=1
Length = 865
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 43 AQSSDLFWATLEAFHKSFGDKFK-VPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEV 101
A S D F +L +F + G K P + ++L L+ V GG +V W ++
Sbjct: 188 AASFDKFMVSLISFMEKRGTPIKSYPQINNTPINLMMLYALVMRAGGSRQVSAHNFWPKI 247
Query: 102 VVVFNFPTTITSASFVLRKYYLSLLYHFEQVY 133
FP+ A +L +YY S L +E+ +
Sbjct: 248 SASLGFPS--PDAISLLIQYYNSYLLPYEEAW 277
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,227,085
Number of Sequences: 539616
Number of extensions: 2889155
Number of successful extensions: 58294
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 44555
Number of HSP's gapped (non-prelim): 12741
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)