Query 029808
Match_columns 187
No_of_seqs 137 out of 511
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ig6_A MRF-2, modulator recogn 100.0 5.7E-32 1.9E-36 203.6 5.9 105 44-149 2-107 (107)
2 2jxj_A Histone demethylase jar 100.0 1.2E-29 4.2E-34 187.2 7.9 92 41-133 3-94 (96)
3 2cxy_A BAF250B subunit, HBAF25 100.0 4.6E-29 1.6E-33 192.7 10.6 99 43-142 19-118 (125)
4 2jrz_A Histone demethylase jar 100.0 5.2E-29 1.8E-33 190.5 10.5 93 41-134 7-99 (117)
5 2eqy_A RBP2 like, jumonji, at 100.0 8.7E-29 3E-33 190.6 11.5 92 41-133 9-100 (122)
6 2lm1_A Lysine-specific demethy 100.0 5.4E-29 1.8E-33 187.0 8.0 91 42-133 12-102 (107)
7 2rq5_A Protein jumonji; develo 100.0 2.3E-28 8E-33 188.5 10.2 88 45-132 12-100 (121)
8 1c20_A DEAD ringer protein; DN 100.0 2.5E-28 8.5E-33 189.2 9.7 92 43-134 20-112 (128)
9 1kkx_A Transcription regulator 99.9 5.2E-28 1.8E-32 186.8 7.9 90 39-133 12-102 (123)
10 2kk0_A AT-rich interactive dom 99.9 1E-27 3.6E-32 189.6 9.2 90 44-133 33-123 (145)
11 2li6_A SWI/SNF chromatin-remod 99.9 2E-27 6.8E-32 181.4 7.4 91 42-138 16-107 (116)
12 1ity_A TRF1; helix-turn-helix, 91.0 0.31 1.1E-05 32.6 4.4 41 78-128 20-60 (69)
13 2elk_A SPCC24B10.08C protein; 88.7 0.74 2.5E-05 29.8 4.7 39 78-127 19-57 (58)
14 1gvd_A MYB proto-oncogene prot 87.9 0.4 1.4E-05 30.1 2.9 39 78-128 13-51 (52)
15 1x41_A Transcriptional adaptor 87.8 1 3.5E-05 29.3 5.0 38 78-127 18-55 (60)
16 2dim_A Cell division cycle 5-l 87.6 0.42 1.4E-05 32.0 3.1 39 78-128 19-57 (70)
17 2ox0_A JMJC domain-containing 87.3 0.19 6.6E-06 44.9 1.5 20 19-38 62-81 (381)
18 1w0t_A Telomeric repeat bindin 86.9 1.1 3.8E-05 28.3 4.6 39 78-126 12-50 (53)
19 1guu_A C-MYB, MYB proto-oncoge 86.5 0.86 2.9E-05 28.5 3.9 39 78-128 13-51 (52)
20 2d9a_A B-MYB, MYB-related prot 85.6 0.83 2.8E-05 29.5 3.6 39 78-128 18-56 (60)
21 3sjm_A Telomeric repeat-bindin 84.7 1.4 4.8E-05 29.2 4.5 40 78-127 21-60 (64)
22 2yum_A ZZZ3 protein, zinc fing 81.2 1.9 6.6E-05 29.0 4.1 44 78-128 18-61 (75)
23 2cu7_A KIAA1915 protein; nucle 79.7 4.6 0.00016 26.9 5.7 41 78-131 19-59 (72)
24 2din_A Cell division cycle 5-l 79.1 3.6 0.00012 26.9 4.9 40 78-131 19-58 (66)
25 3dxt_A JMJC domain-containing 78.5 0.7 2.4E-05 40.9 1.4 18 20-37 45-62 (354)
26 2k9n_A MYB24; R2R3 domain, DNA 72.9 2.9 0.0001 29.9 3.3 38 78-127 11-48 (107)
27 2yus_A SWI/SNF-related matrix- 72.6 3.2 0.00011 28.7 3.3 36 77-125 27-62 (79)
28 2lpy_A Matrix protein P10; GAG 66.4 15 0.00052 27.7 6.1 55 44-105 5-62 (124)
29 1gv2_A C-MYB, MYB proto-oncoge 60.2 10 0.00035 26.7 4.1 38 78-127 14-51 (105)
30 3opt_A DNA damage-responsive t 59.3 1.1 3.9E-05 39.8 -1.5 18 20-37 40-57 (373)
31 2cqq_A RSGI RUH-037, DNAJ homo 59.1 16 0.00053 24.7 4.6 40 78-127 18-57 (72)
32 2k9n_A MYB24; R2R3 domain, DNA 57.5 16 0.00054 25.9 4.7 40 77-129 62-101 (107)
33 1bax_A M-PMV MA, M-PMV matrix 56.9 12 0.00042 27.0 3.9 53 47-106 9-64 (94)
34 1h8a_C AMV V-MYB, MYB transfor 54.7 20 0.00068 26.1 5.0 39 77-127 36-74 (128)
35 1gv2_A C-MYB, MYB proto-oncoge 49.4 20 0.00069 25.1 4.1 38 77-127 65-102 (105)
36 2cjj_A Radialis; plant develop 45.3 61 0.0021 22.9 6.1 32 95-131 31-62 (93)
37 3osg_A MYB21; transcription-DN 45.1 21 0.00071 26.1 3.7 38 77-127 20-57 (126)
38 2ltp_A Nuclear receptor corepr 50.6 4.6 0.00016 28.3 0.0 30 97-131 37-66 (89)
39 2cqr_A RSGI RUH-043, DNAJ homo 44.2 21 0.00071 24.2 3.3 27 96-127 42-68 (73)
40 2ckx_A NGTRF1, telomere bindin 44.0 38 0.0013 23.4 4.8 40 78-127 10-51 (83)
41 2llk_A Cyclin-D-binding MYB-li 41.2 47 0.0016 22.4 4.7 33 78-124 33-65 (73)
42 3zqc_A MYB3; transcription-DNA 39.6 25 0.00087 25.8 3.4 38 78-128 64-101 (131)
43 2juh_A Telomere binding protei 38.4 55 0.0019 24.3 5.2 42 77-127 26-68 (121)
44 1h89_C C-MYB, MYB proto-oncoge 37.6 44 0.0015 25.1 4.6 39 77-127 67-105 (159)
45 1x58_A Hypothetical protein 49 36.5 84 0.0029 20.8 5.3 41 76-126 16-56 (62)
46 3osg_A MYB21; transcription-DN 36.4 46 0.0016 24.2 4.4 39 77-128 71-109 (126)
47 1fex_A TRF2-interacting telome 35.3 56 0.0019 21.0 4.2 45 78-126 12-57 (59)
48 2do5_A Splicing factor 3B subu 33.8 40 0.0014 21.8 3.1 27 43-69 28-54 (58)
49 2lo0_A Uncharacterized protein 32.4 23 0.00078 24.5 2.0 18 43-60 36-53 (75)
50 2roh_A RTBP1, telomere binding 30.4 79 0.0027 23.5 4.9 40 78-127 41-82 (122)
51 3ezq_B Protein FADD; apoptosis 28.5 44 0.0015 24.6 3.2 28 75-109 4-31 (122)
52 2aje_A Telomere repeat-binding 28.1 57 0.002 23.6 3.6 41 77-127 22-64 (105)
53 4b4c_A Chromodomain-helicase-D 24.9 1.2E+02 0.004 23.5 5.3 53 73-133 12-64 (211)
54 2ebi_A DNA binding protein GT- 22.4 1.3E+02 0.0044 20.1 4.5 35 94-132 32-69 (86)
55 1wgx_A KIAA1903 protein; MYB D 22.0 63 0.0022 21.9 2.7 26 96-126 32-57 (73)
56 2ys8_A RAB-related GTP-binding 21.2 95 0.0032 21.1 3.6 26 102-129 30-55 (90)
57 3hm5_A DNA methyltransferase 1 20.7 2.3E+02 0.0078 20.0 6.2 46 78-131 40-85 (93)
58 2d96_A Nuclear factor NF-kappa 20.7 70 0.0024 23.4 2.9 30 94-123 29-64 (109)
59 1ich_A TNF-1, tumor necrosis f 20.4 78 0.0027 23.2 3.1 31 73-110 10-40 (112)
No 1
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=99.97 E-value=5.7e-32 Score=203.58 Aligned_cols=105 Identities=20% Similarity=0.317 Sum_probs=99.7
Q ss_pred hcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHH
Q 029808 44 QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 122 (187)
Q Consensus 44 ~~~~~Fl~~L~~F~~~rG~pl-~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y 122 (187)
++++.|+++|.+||+++|+++ ++|.|+|++||||+||.+|+++|||++|+++++|.+||+.||++.+++++++.||++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y 81 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 578999999999999999999 7999999999999999999999999999999999999999999998899999999999
Q ss_pred HHhHHHHHHHHHhhccCCCCCCCCCCC
Q 029808 123 LSLLYHFEQVYYFRKEAPSSSMPDAVS 149 (187)
Q Consensus 123 ~kyLl~fE~~~~~~~~~~~~~~~~~~~ 149 (187)
++||++||+ +..++++.+.|++.|.+
T Consensus 82 ~k~L~~yE~-~~~~~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 82 ERLILPYER-FIKGEEDKPLPPIKPRK 107 (107)
T ss_dssp HHHTTTTHH-HHHHHTSSSSCTTCSCC
T ss_pred HHHHHHHHH-HHcCCCCCCCCCCCCCC
Confidence 999999999 55799999999998863
No 2
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=187.18 Aligned_cols=92 Identities=26% Similarity=0.400 Sum_probs=87.4
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCCCCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHH
Q 029808 41 DIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120 (187)
Q Consensus 41 d~~~~~~~Fl~~L~~F~~~rG~pl~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~ 120 (187)
+.+++++.|+++|.+||++||+++++|.|+||+||||+||.+|+++|||++|+++++|.+||+.||+++++ +++..||+
T Consensus 3 ~~~r~~~~F~~~L~~F~~~~g~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~ 81 (96)
T 2jxj_A 3 LGSRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKS 81 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCCCCCCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCCCcCCCEeccHHHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcC-cHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999865 67889999
Q ss_pred HHHHhHHHHHHHH
Q 029808 121 YYLSLLYHFEQVY 133 (187)
Q Consensus 121 ~Y~kyLl~fE~~~ 133 (187)
+|++||++||++.
T Consensus 82 ~Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 82 HYERILYPYELFQ 94 (96)
T ss_dssp HHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
No 3
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=99.96 E-value=4.6e-29 Score=192.69 Aligned_cols=99 Identities=32% Similarity=0.546 Sum_probs=92.3
Q ss_pred hhcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHH
Q 029808 43 AQSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKY 121 (187)
Q Consensus 43 ~~~~~~Fl~~L~~F~~~rG~pl-~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~ 121 (187)
..+++.|+++|.+||++||+++ ++|.|+||+||||+||.+|+++|||++|+++++|.+||+.||++. ++++++.||++
T Consensus 19 ~~~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~s~~~~Lk~~ 97 (125)
T 2cxy_A 19 EPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGT-SSSAASSLKKQ 97 (125)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCS-SHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcCCCCCCCeeECCEeecHHHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCC-CCcHHHHHHHH
Confidence 3467789999999999999999 799999999999999999999999999999999999999999997 47899999999
Q ss_pred HHHhHHHHHHHHHhhccCCCC
Q 029808 122 YLSLLYHFEQVYYFRKEAPSS 142 (187)
Q Consensus 122 Y~kyLl~fE~~~~~~~~~~~~ 142 (187)
|++||++||+++.+++++|+.
T Consensus 98 Y~k~L~~yE~~~~~g~~~p~~ 118 (125)
T 2cxy_A 98 YIQYLFAFECKIERGEEPPPE 118 (125)
T ss_dssp HHHHTHHHHHHHHHCCCCCCS
T ss_pred HHHHHHHHHHHHHcCCCCChh
Confidence 999999999999888876654
No 4
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=99.96 E-value=5.2e-29 Score=190.51 Aligned_cols=93 Identities=26% Similarity=0.458 Sum_probs=89.1
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCCCCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHH
Q 029808 41 DIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120 (187)
Q Consensus 41 d~~~~~~~Fl~~L~~F~~~rG~pl~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~ 120 (187)
..+++++.|+++|.+||+.||+++++|.|+|++||||+||.+|+++|||++|+++++|.+||+.||++++ +++++.||+
T Consensus 7 ~~~r~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~~Lk~ 85 (117)
T 2jrz_A 7 AQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSLLRS 85 (117)
T ss_dssp TSTTTHHHHHHHHHHHHHTTTSCCCCCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCC-CcHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999999999987 889999999
Q ss_pred HHHHhHHHHHHHHH
Q 029808 121 YYLSLLYHFEQVYY 134 (187)
Q Consensus 121 ~Y~kyLl~fE~~~~ 134 (187)
+|++||++||++..
T Consensus 86 ~Y~k~L~~yE~~~~ 99 (117)
T 2jrz_A 86 HYERIVYPYEMYQS 99 (117)
T ss_dssp HHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999874
No 5
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.96 E-value=8.7e-29 Score=190.61 Aligned_cols=92 Identities=23% Similarity=0.415 Sum_probs=87.8
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCCCCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHH
Q 029808 41 DIAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120 (187)
Q Consensus 41 d~~~~~~~Fl~~L~~F~~~rG~pl~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~ 120 (187)
..+++++.|+++|.+||++||+++++|.|+||+||||+||.+|+++|||++|+++++|.+||+.||++++ +++++.||+
T Consensus 9 ~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~-~~~~~~Lr~ 87 (122)
T 2eqy_A 9 AQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPG-KAVGSHIRG 87 (122)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTCCCCCCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSS-SHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHcCCCCCCCeECCEeccHHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCC-CcHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999984 678899999
Q ss_pred HHHHhHHHHHHHH
Q 029808 121 YYLSLLYHFEQVY 133 (187)
Q Consensus 121 ~Y~kyLl~fE~~~ 133 (187)
+|++||++||++.
T Consensus 88 ~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 88 HYERILNPYNLFL 100 (122)
T ss_dssp HHHHTHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 9999999999965
No 6
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.95 E-value=5.4e-29 Score=187.02 Aligned_cols=91 Identities=29% Similarity=0.472 Sum_probs=87.6
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCCCCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHH
Q 029808 42 IAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKY 121 (187)
Q Consensus 42 ~~~~~~~Fl~~L~~F~~~rG~pl~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~ 121 (187)
.+++++.|+++|.+||+.+|+++++|.|+|++||||+||.+|+++|||++|+++++|.+||+.||++.+ +++++.||++
T Consensus 12 ~~~~~~~F~~~L~~F~~~~g~~l~~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~~~lk~~ 90 (107)
T 2lm1_A 12 KTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVGATLKAH 90 (107)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCCSCCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHcCCCCCCCeECCEeecHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC-CcHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999999999999999999985 7899999999
Q ss_pred HHHhHHHHHHHH
Q 029808 122 YLSLLYHFEQVY 133 (187)
Q Consensus 122 Y~kyLl~fE~~~ 133 (187)
|++||++||++.
T Consensus 91 Y~k~L~~yE~~~ 102 (107)
T 2lm1_A 91 YERILHPFEVYT 102 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHH
Confidence 999999999986
No 7
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=99.95 E-value=2.3e-28 Score=188.45 Aligned_cols=88 Identities=22% Similarity=0.419 Sum_probs=84.8
Q ss_pred cHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHH
Q 029808 45 SSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYL 123 (187)
Q Consensus 45 ~~~~Fl~~L~~F~~~rG~pl-~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~ 123 (187)
....|+++|.+||++||+|+ ++|.|+|++||||+||.+|+++|||++|+++++|.+||+.||+|++++++++.||++|+
T Consensus 12 ~~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~ 91 (121)
T 2rq5_A 12 PNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYC 91 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCCCCCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHH
Confidence 46789999999999999999 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHH
Q 029808 124 SLLYHFEQV 132 (187)
Q Consensus 124 kyLl~fE~~ 132 (187)
+||++||++
T Consensus 92 k~L~~YE~~ 100 (121)
T 2rq5_A 92 QYLLSYDSL 100 (121)
T ss_dssp TTHHHHHHC
T ss_pred HHhHHHHCc
Confidence 999999984
No 8
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=99.95 E-value=2.5e-28 Score=189.17 Aligned_cols=92 Identities=33% Similarity=0.577 Sum_probs=89.0
Q ss_pred hhcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHH
Q 029808 43 AQSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKY 121 (187)
Q Consensus 43 ~~~~~~Fl~~L~~F~~~rG~pl-~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~ 121 (187)
.++++.|+++|.+||+++|+++ ++|.|+|++||||+||.+|+++|||++|+++++|.+||+.||++.+++++++.||++
T Consensus 20 ~~~~~~Fl~~L~~F~~~rG~~l~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~ 99 (128)
T 1c20_A 20 DPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQ 99 (128)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCCCccceeECCEeecHHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHH
Confidence 4789999999999999999999 799999999999999999999999999999999999999999999899999999999
Q ss_pred HHHhHHHHHHHHH
Q 029808 122 YLSLLYHFEQVYY 134 (187)
Q Consensus 122 Y~kyLl~fE~~~~ 134 (187)
|++||++||++..
T Consensus 100 Y~k~L~~yE~~~~ 112 (128)
T 1c20_A 100 YMKYLYPYECEKK 112 (128)
T ss_dssp HHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999884
No 9
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=99.95 E-value=5.2e-28 Score=186.81 Aligned_cols=90 Identities=21% Similarity=0.386 Sum_probs=83.9
Q ss_pred chhhhhcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHH
Q 029808 39 YEDIAQSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFV 117 (187)
Q Consensus 39 ~~d~~~~~~~Fl~~L~~F~~~rG~pl-~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~ 117 (187)
+++.+++++.|+++|.+||+++|+|+ ++|.|+|++||||+||.+|+++|||++|+++++|.+||+.||+++ +..
T Consensus 12 ~~~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~~ 86 (123)
T 1kkx_A 12 HGSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQ 86 (123)
T ss_dssp ---CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HHH
T ss_pred cCCcchhHHHHHHHHHHHHHHcCCCCCcCceECCEeecHHHHHHHHHHhcCHHhccccccHHHHHHHHCCCh-----HHH
Confidence 34578899999999999999999999 799999999999999999999999999999999999999999997 679
Q ss_pred HHHHHHHhHHHHHHHH
Q 029808 118 LRKYYLSLLYHFEQVY 133 (187)
Q Consensus 118 Lk~~Y~kyLl~fE~~~ 133 (187)
||++|++||++||+++
T Consensus 87 Lr~~Y~k~L~~yE~~~ 102 (123)
T 1kkx_A 87 LESIYFRILLPYERHM 102 (123)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999955
No 10
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.94 E-value=1e-27 Score=189.59 Aligned_cols=90 Identities=37% Similarity=0.635 Sum_probs=87.1
Q ss_pred hcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHH
Q 029808 44 QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 122 (187)
Q Consensus 44 ~~~~~Fl~~L~~F~~~rG~pl-~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y 122 (187)
.+++.|+++|.+||+++|+|+ ++|.|+|++||||+||.+|+++|||++|+++++|.+||+.||++.+++++++.||++|
T Consensus 33 ~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y 112 (145)
T 2kk0_A 33 PKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQY 112 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCCccceeECCEEecHHHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHH
Confidence 449999999999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHH
Q 029808 123 LSLLYHFEQVY 133 (187)
Q Consensus 123 ~kyLl~fE~~~ 133 (187)
++||++||++.
T Consensus 113 ~k~L~~yE~~~ 123 (145)
T 2kk0_A 113 MKYLYPYECEK 123 (145)
T ss_dssp HHHSSHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 11
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-27 Score=181.40 Aligned_cols=91 Identities=22% Similarity=0.412 Sum_probs=84.7
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHH
Q 029808 42 IAQSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRK 120 (187)
Q Consensus 42 ~~~~~~~Fl~~L~~F~~~rG~pl-~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~ 120 (187)
.+++++.|++.|.+||+++|+++ ++|.|+|++||||+||.+|+++|||++|+++++|.+||+.||+++ +..||.
T Consensus 16 ~~~~~~~F~~~L~~F~~~~G~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-----~~~Lr~ 90 (116)
T 2li6_A 16 NNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQLES 90 (116)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSCCSSCCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-----TTHHHH
T ss_pred cchhHHHHHHHHHHHHHHcCCCCCCCceECCEeecHHHHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-----HHHHHH
Confidence 57899999999999999999999 799999999999999999999999999999999999999999997 459999
Q ss_pred HHHHhHHHHHHHHHhhcc
Q 029808 121 YYLSLLYHFEQVYYFRKE 138 (187)
Q Consensus 121 ~Y~kyLl~fE~~~~~~~~ 138 (187)
+|++||++||++. .+.+
T Consensus 91 ~Y~k~L~~yE~~~-~~~~ 107 (116)
T 2li6_A 91 IYFRILLPYERHM-ISQE 107 (116)
T ss_dssp HHHHHHSHHHHHH-HHTT
T ss_pred HHHHHHHHHHHHH-hCcc
Confidence 9999999999955 4443
No 12
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=90.98 E-value=0.31 Score=32.62 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=30.9
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~ 128 (187)
.|...|.+.|- +.|..||..|++... .+.++|..|.++|.+
T Consensus 20 ~L~~~v~~~G~-------~~W~~Ia~~~~~~~R---t~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 20 NLRSGVRKYGE-------GNWSKILLHYKFNNR---TSVMLKDRWRTMKKL 60 (69)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHSCCSSC---CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCC-------CcHHHHHHHcCcCCC---CHHHHHHHHHHHcCC
Confidence 57788888872 379999999986322 234899999998865
No 13
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=88.74 E-value=0.74 Score=29.84 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=29.0
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl 127 (187)
+|..+|.+.|- +.|..||..++...+ +.+.|..|.++++
T Consensus 19 ~L~~~v~~~G~-------~~W~~IA~~~~~~Rt----~~qcr~r~~~~~~ 57 (58)
T 2elk_A 19 LLIDACETLGL-------GNWADIADYVGNART----KEECRDHYLKTYI 57 (58)
T ss_dssp HHHHHHHHTTT-------TCHHHHHHHHCSSCC----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc-------CCHHHHHHHHCCCCC----HHHHHHHHHHHcc
Confidence 67778888771 379999999985432 3488999988763
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=87.85 E-value=0.4 Score=30.15 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=28.2
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~ 128 (187)
.|..+|.+.|- +.|..||..|+ . .+ +.++|..|.++|.|
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~--~-Rt--~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYGP-------KRWSVIAKHLK--G-RI--GKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTST--T-CC--HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCc-------ChHHHHHHHcC--C-CC--HHHHHHHHHHHcCc
Confidence 46677777762 46999999984 2 22 34899999998853
No 15
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=87.82 E-value=1 Score=29.28 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=27.8
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl 127 (187)
+|..+|...|- +.|..||..|+- .+ +.++|..|.++|.
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~~---Rt--~~qcr~r~~~~l~ 55 (60)
T 1x41_A 18 ALLEAVMDCGF-------GNWQDVANQMCT---KT--KEECEKHYMKYFS 55 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHHTT---SC--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc-------CcHHHHHHHhCC---CC--HHHHHHHHHHHcc
Confidence 46667777761 379999999953 22 3489999999875
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.62 E-value=0.42 Score=31.98 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=28.7
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~ 128 (187)
.|..+|.+.| .+.|..||..|+- . .+.++|..|.++|.|
T Consensus 19 ~L~~~v~~~G-------~~~W~~Ia~~l~~---R--t~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 19 ILKAAVMKYG-------KNQWSRIASLLHR---K--SAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHHTC-------SSCHHHHHHHSTT---C--CHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHC-------cCCHHHHHHHhcC---C--CHHHHHHHHHHHcCC
Confidence 5777788777 2479999999862 1 234889999988854
No 17
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=87.27 E-value=0.19 Score=44.87 Aligned_cols=20 Identities=5% Similarity=0.074 Sum_probs=17.5
Q ss_pred CCCCccccCCCCCCCCCCCC
Q 029808 19 SNSNNNNSKASSYYPPPTAK 38 (187)
Q Consensus 19 ~~sgi~~i~pp~~w~PPf~~ 38 (187)
..+|||||+||+.|+||...
T Consensus 62 ~~~GI~KIIPP~~W~p~~~~ 81 (381)
T 2ox0_A 62 HRAGLAKVVPPKEWKPRASY 81 (381)
T ss_dssp GGGSEEEECCCTTCCSCSCS
T ss_pred cccCceeecCCccCCCcccc
Confidence 37999999999999999754
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=86.92 E-value=1.1 Score=28.25 Aligned_cols=39 Identities=21% Similarity=0.465 Sum_probs=28.8
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLL 126 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyL 126 (187)
.|...|.+.|. +.|..||..|++... + +.+++.-|.++|
T Consensus 12 ~L~~~v~~~G~-------~~W~~Ia~~~~~~~R-t--~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 12 NLRSGVRKYGE-------GNWSKILLHYKFNNR-T--SVMLKDRWRTMK 50 (53)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSC-C--HHHHHHHHHHHH
T ss_pred HHHHHHHHHCc-------CCHHHHHHHcCCCCC-C--HHHHHHHHHHHH
Confidence 57778888872 379999999986422 2 348898888876
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=86.54 E-value=0.86 Score=28.51 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=28.2
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~ 128 (187)
.|..+|...|- ..|..||..|+- .+ +.+++..|.++|.|
T Consensus 13 ~L~~~v~~~G~-------~~W~~Ia~~~~~---Rt--~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGT-------DDWKVIANYLPN---RT--DVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTSTT---CC--HHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC-------CCHHHHHHHcCC---CC--HHHHHHHHHHHcCc
Confidence 46677777763 479999999842 22 34899999998853
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=85.61 E-value=0.83 Score=29.50 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=27.7
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~ 128 (187)
.|..+|.+.|- +.|..||..|.- .+ +.++|..|.++|.|
T Consensus 18 ~L~~~v~~~G~-------~~W~~Ia~~~~~---Rt--~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 18 QLRALVRQFGQ-------QDWKFLASHFPN---RT--DQQCQYRWLRVLSG 56 (60)
T ss_dssp HHHHHHHHTCT-------TCHHHHHHHCSS---SC--HHHHHHHHHHTSCS
T ss_pred HHHHHHHHhCC-------CCHHHHHHHccC---CC--HHHHHHHHHHHcCC
Confidence 46667777662 479999999742 22 34899999988753
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=84.69 E-value=1.4 Score=29.24 Aligned_cols=40 Identities=13% Similarity=0.306 Sum_probs=29.5
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl 127 (187)
.|...|.+.|- +.|..||..+.+... + +.++|.-|..++.
T Consensus 21 ~L~~~V~~~G~-------~~W~~Ia~~~~~~~R-t--~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 21 WVKAGVQKYGE-------GNWAAISKNYPFVNR-T--AVMIKDRWRTMKR 60 (64)
T ss_dssp HHHHHHHHHCT-------TCHHHHHHHSCCSSC-C--HHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-------CchHHHHhhcCCCCC-C--HHHHHHHHHHHhc
Confidence 57778888872 269999999887643 2 3488998887764
No 22
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.20 E-value=1.9 Score=28.96 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=29.9
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~ 128 (187)
.|..+|...|--. +..+.|..||..|+- .+ ..+++..|.+||.+
T Consensus 18 ~L~~~v~~~g~~~--~~~~~W~~IA~~~~~---Rt--~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 18 KLEQLLIKYPPEE--VESRRWQKIADELGN---RT--AKQVASQVQKYFIK 61 (75)
T ss_dssp HHHHHHHHSCCCS--CHHHHHHHHHHHHSS---SC--HHHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCCC--CCcccHHHHHHHhCC---CC--HHHHHHHHHHHHHH
Confidence 4666777777211 112589999999963 22 34899999999865
No 23
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=79.71 E-value=4.6 Score=26.93 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=29.3
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHHHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQ 131 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~fE~ 131 (187)
.|..+|...|- .|..||..|+-- + ..++|..|.+||.+..+
T Consensus 19 ~l~~~~~~~G~--------~W~~Ia~~~~~R---t--~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 19 LFEQGLAKFGR--------RWTKISKLIGSR---T--VLQVKSYARQYFKNKVK 59 (72)
T ss_dssp HHHHHHHHTCS--------CHHHHHHHHSSS---C--HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCc--------CHHHHHHHcCCC---C--HHHHHHHHHHHHHHHHh
Confidence 45667776663 799999987532 2 34899999999876533
No 24
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.06 E-value=3.6 Score=26.89 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=27.7
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHHHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQ 131 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~fE~ 131 (187)
.|..+|...| +.|..||...| . + +.++|..|..+|.+--.
T Consensus 19 ~L~~~~~~~g--------~~W~~Ia~~~g--R--t--~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 19 KLLHLAKLMP--------TQWRTIAPIIG--R--T--AAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp HHHHHHHHCT--------TCHHHHHHHHS--S--C--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CCHHHHhcccC--c--C--HHHHHHHHHHHhChHhc
Confidence 3555566554 27999999555 2 1 34999999999987543
No 25
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=78.46 E-value=0.7 Score=40.88 Aligned_cols=18 Identities=0% Similarity=-0.055 Sum_probs=16.3
Q ss_pred CCCccccCCCCCCCCCCC
Q 029808 20 NSNNNNSKASSYYPPPTA 37 (187)
Q Consensus 20 ~sgi~~i~pp~~w~PPf~ 37 (187)
.+|||||+||++|.|...
T Consensus 45 ~~Gi~KIIPP~~W~~r~~ 62 (354)
T 3dxt_A 45 RAGLAKIIPPKEWKARET 62 (354)
T ss_dssp GGSEEEECCCTTCCSSSC
T ss_pred ccCcccccCcccccCccc
Confidence 689999999999999863
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=72.88 E-value=2.9 Score=29.93 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=27.6
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl 127 (187)
.|..+|...|. +.|..||..|+- .+ +.+++..|.++|.
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~---Rt--~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 11 KLQQLVMRYGA-------KDWIRISQLMIT---RN--PRQCRERWNNYIN 48 (107)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHTTT---SC--HHHHHHHHHHHSS
T ss_pred HHHHHHHHHCC-------CCHHHHhhhcCC---CC--HHHHHHHHHHHHc
Confidence 57778888874 479999999862 11 3477888887774
No 27
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=72.59 E-value=3.2 Score=28.69 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=26.0
Q ss_pred hhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHh
Q 029808 77 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 125 (187)
Q Consensus 77 y~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~ky 125 (187)
.+|..+|...| +.|..||+.++- . + ..+++.+|.++
T Consensus 27 ~~Ll~~v~~~G--------~~W~~IA~~v~~-R--T--~~qcr~r~~~~ 62 (79)
T 2yus_A 27 LLLLEALEMYK--------DDWNKVSEHVGS-R--T--QDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHHSS--------SCHHHHHHHHSS-C--C--HHHHHHHHTTS
T ss_pred HHHHHHHHHhC--------CCHHHHHHHcCC-C--C--HHHHHHHHHHh
Confidence 35667788777 379999999973 2 2 34888888765
No 28
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=66.44 E-value=15 Score=27.75 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=40.5
Q ss_pred hcHHHHHHHHHHHHHhcCCCCCCCeeCCeecchhhHHHHHHhhCCcccc---ccccChHHHHHHh
Q 029808 44 QSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKV---IRDRRWKEVVVVF 105 (187)
Q Consensus 44 ~~~~~Fl~~L~~F~~~rG~pl~~P~I~gk~VDLy~Ly~~V~~~GG~~~V---~~~k~W~eVa~~L 105 (187)
...+.|+..|+..+++||..+ +.=||-.+|..|.+.-=.-.. -.-+.|..|++.|
T Consensus 5 s~~~~fi~~Lk~~LK~rGvkV-------~~k~L~~Ff~~i~~~cPWFp~eGtLd~~~W~kVG~~L 62 (124)
T 2lpy_A 5 SQHERYVEQLKQALKTRGVKV-------KYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCF 62 (124)
T ss_dssp HHHHHHHHHHHHHHHTTTCCC-------CHHHHHHHHHHHHHHCTTCTTTCCCCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCeee-------cHHHHHHHHHHHHHhCCCcCCCCccCHHHHHHHHHHH
Confidence 457899999999999999986 345788899988754221111 1234899999988
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=60.23 E-value=10 Score=26.66 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=26.9
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl 127 (187)
.|..+|.+.|. +.|..||..|. . .+ +.+++..|.++|.
T Consensus 14 ~L~~~v~~~g~-------~~W~~Ia~~l~--~-Rt--~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 14 RVIKLVQKYGP-------KRWSVIAKHLK--G-RI--GKQCRERWHNHLN 51 (105)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTST--T-CC--HHHHHHHHHHTTC
T ss_pred HHHHHHHHhCC-------CcHHHHhhhhc--C-CC--HHHHHHHHHhccC
Confidence 56777887774 46999999883 2 22 3478888888763
No 30
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=59.31 E-value=1.1 Score=39.78 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=16.4
Q ss_pred CCCccccCCCCCCCCCCC
Q 029808 20 NSNNNNSKASSYYPPPTA 37 (187)
Q Consensus 20 ~sgi~~i~pp~~w~PPf~ 37 (187)
.+|||||.||+.|.+...
T Consensus 40 ~~Gi~KVIPPkeW~~~~~ 57 (373)
T 3opt_A 40 KSGVVKVIPPKEWKDKLD 57 (373)
T ss_dssp TSSEEEECCCHHHHTTSC
T ss_pred ccCeEEEeCchhhhhccc
Confidence 699999999999999864
No 31
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=59.06 E-value=16 Score=24.74 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=25.7
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl 127 (187)
.|-+++..+++- ..++|..||..+| . ...+++++|..+..
T Consensus 18 ~fe~al~~~p~~----t~~RW~~IA~~lg--R----t~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 18 QLTRSMVKFPGG----TPGRWEKIAHELG--R----SVTDVTTKAKQLKD 57 (72)
T ss_dssp HHHHHHHHSCTT----CTTHHHHHHHHHT--S----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC----CCcHHHHHHHHhC--C----CHHHHHHHHHHHHH
Confidence 344555555532 1358999999996 2 23488888877653
No 32
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=57.52 E-value=16 Score=25.94 Aligned_cols=40 Identities=13% Similarity=0.259 Sum_probs=28.9
Q ss_pred hhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHHH
Q 029808 77 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHF 129 (187)
Q Consensus 77 y~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~f 129 (187)
..|..+|...| +.|..||..|. . .+ ..+++..|..++..-
T Consensus 62 ~~L~~~~~~~G--------~~W~~Ia~~l~--g-Rt--~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 62 MLLDQKYAEYG--------PKWNKISKFLK--N-RS--DNNIRNRWMMIARHR 101 (107)
T ss_dssp HHHHHHHHHTC--------SCHHHHHHHHS--S-SC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--------cCHHHHHHHCC--C-CC--HHHHHHHHHHHHhhH
Confidence 36777888887 37999999983 2 22 348999998877654
No 33
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=56.88 E-value=12 Score=26.99 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeeCCeecchhhHHHHHHhhCCccccc---cccChHHHHHHhC
Q 029808 47 DLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVI---RDRRWKEVVVVFN 106 (187)
Q Consensus 47 ~~Fl~~L~~F~~~rG~pl~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~---~~k~W~eVa~~Lg 106 (187)
+.|+..|..++++||..+ +.=||.++|..|.+..=.-.+. .-+.|..|.+.|.
T Consensus 9 q~fi~~lk~lLk~RgIkV-------kk~~L~~Ff~fi~~~cPWFp~eGtl~l~~W~kVG~~L~ 64 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV-------KYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 64 (94)
T ss_pred hHHHHHHHHHHHHcCeee-------cHHHHHHHHHHHHHhCCCcCcCCcccHHHHHHHHHHHH
Confidence 789999999999999976 4458888899888743221111 1248999998876
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=54.66 E-value=20 Score=26.12 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=27.9
Q ss_pred hhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHH
Q 029808 77 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 77 y~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl 127 (187)
-.|-.+|...|. +.|..||..|+- .+ +.+++..|.++|.
T Consensus 36 ~~L~~~v~~~g~-------~~W~~Ia~~l~~---Rt--~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 36 QRVIEHVQKYGP-------KRWSDIAKHLKG---RI--GKQCRERWHNHLN 74 (128)
T ss_dssp HHHHHHHHHTCS-------CCHHHHHHHSSS---CC--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC-------CCHHHHHHHhcC---Cc--HHHHHHHHHHhcc
Confidence 467777888774 469999999842 22 3478888888774
No 35
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=49.37 E-value=20 Score=25.08 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=26.8
Q ss_pred hhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHH
Q 029808 77 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 77 y~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl 127 (187)
..|..+|...| +.|..||..| |. .+ ..+++..|..+|.
T Consensus 65 ~~L~~~~~~~G--------~~W~~Ia~~l--~g-Rt--~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 65 RIIYQAHKRLG--------NRWAEIAKLL--PG-RT--DNAIKNHWNSTMR 102 (105)
T ss_dssp HHHHHHHHHHS--------SCHHHHHTTC--TT-CC--HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC--------CCHHHHHHHc--CC-CC--HHHHHHHHHHHHh
Confidence 45777788887 3799999876 32 22 3488999887663
No 36
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=45.29 E-value=61 Score=22.87 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=23.2
Q ss_pred ccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHHHHH
Q 029808 95 DRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQ 131 (187)
Q Consensus 95 ~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~fE~ 131 (187)
.+.|..||..|+- . | ..+++.+|..++.....
T Consensus 31 ~~rW~~IA~~vpG-R--T--~~q~k~ry~~l~~dv~~ 62 (93)
T 2cjj_A 31 PDRWANVARAVEG-R--T--PEEVKKHYEILVEDIKY 62 (93)
T ss_dssp TTHHHHHHHHSTT-C--C--HHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHcCC-C--C--HHHHHHHHHHHHHHHHH
Confidence 3589999999963 2 2 34899999988766433
No 37
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=45.10 E-value=21 Score=26.11 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=26.6
Q ss_pred hhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHH
Q 029808 77 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 77 y~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl 127 (187)
-+|..+|...|. .|..||..|+- . .+.+++..|.++|.
T Consensus 20 ~~L~~~v~~~G~--------~W~~Ia~~~~~--R---t~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 20 EMLKRAVAQHGS--------DWKMIAATFPN--R---NARQCRDRWKNYLA 57 (126)
T ss_dssp HHHHHHHHHHTT--------CHHHHHHTCTT--C---CHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCC--------CHHHHHHHcCC--C---CHHHHHHHHhhhcc
Confidence 356777777763 59999998742 1 13478888888874
No 38
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=50.63 E-value=4.6 Score=28.29 Aligned_cols=30 Identities=10% Similarity=0.253 Sum_probs=21.9
Q ss_pred ChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHHHHH
Q 029808 97 RWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQ 131 (187)
Q Consensus 97 ~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~fE~ 131 (187)
.|..||..|+--+ ..+++..|..+|..+..
T Consensus 37 ~W~~IA~~l~gRt-----~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 37 NWSAIARMVGSKT-----VSQCKNFYFNYKKRQNL 66 (89)
Confidence 5999999975221 23889999988877644
No 39
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=44.17 E-value=21 Score=24.19 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=19.8
Q ss_pred cChHHHHHHhCCCCCCCcHHHHHHHHHHHhHH
Q 029808 96 RRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 96 k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl 127 (187)
+.|..||..|+- .| ..+++..|..++.
T Consensus 42 ~rW~~IA~~vpG---RT--~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 42 DCWDKIARCVPS---KS--KEDCIARYKLLVS 68 (73)
T ss_dssp HHHHHHGGGCSS---SC--HHHHHHHHHHHHS
T ss_pred chHHHHHHHcCC---CC--HHHHHHHHHHHHH
Confidence 589999999962 22 3488888887653
No 40
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=44.04 E-value=38 Score=23.40 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=28.2
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhC--CCCCCCcHHHHHHHHHHHhHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFN--FPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lg--lp~~~t~a~~~Lk~~Y~kyLl 127 (187)
.|-..|.+.|. ..|..|+.... |+. .| ..+||..|.++|.
T Consensus 10 ~L~~gv~k~G~-------g~W~~I~~~~~~~~~~-RT--~~~lKdrWrnllk 51 (83)
T 2ckx_A 10 ALVEAVEHLGT-------GRWRDVKMRAFDNADH-RT--YVDLKDKWKTLVH 51 (83)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHHHCTTCTT-SC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-------CCcHHHHHhhccccCC-CC--HHHHHHHHHHHHH
Confidence 46677888773 47999999744 343 33 3489999988775
No 41
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=41.20 E-value=47 Score=22.43 Aligned_cols=33 Identities=9% Similarity=0.150 Sum_probs=23.0
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLS 124 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~k 124 (187)
.|..+|.+.|- +|..||..| ..+ ..++|..|..
T Consensus 33 ~L~~l~~~~G~--------kW~~IA~~l--gRt----~~q~knRw~~ 65 (73)
T 2llk_A 33 KLKELRIKHGN--------DWATIGAAL--GRS----ASSVKDRCRL 65 (73)
T ss_dssp HHHHHHHHHSS--------CHHHHHHHH--TSC----HHHHHHHHHH
T ss_pred HHHHHHHHHCC--------CHHHHHHHh--CCC----HHHHHHHHHH
Confidence 56677777772 599999999 332 2378887764
No 42
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=39.60 E-value=25 Score=25.75 Aligned_cols=38 Identities=13% Similarity=0.293 Sum_probs=27.4
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~ 128 (187)
.|..+|...|. .|..||..|. . .+ ..+++..|..+|.+
T Consensus 64 ~L~~~~~~~G~--------~W~~Ia~~l~--g-Rt--~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 64 TIFRNYLKLGS--------KWSVIAKLIP--G-RT--DNAIKNRWNSSISK 101 (131)
T ss_dssp HHHHHHHHSCS--------CHHHHTTTST--T-CC--HHHHHHHHHHTTGG
T ss_pred HHHHHHHHHCc--------CHHHHHHHcC--C-CC--HHHHHHHHHHHHHH
Confidence 57778888884 6999999764 2 22 33889999887753
No 43
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=38.41 E-value=55 Score=24.34 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=29.5
Q ss_pred hhHHHHHHhhCCccccccccChHHHHHHhCCC-CCCCcHHHHHHHHHHHhHH
Q 029808 77 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFP-TTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 77 y~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp-~~~t~a~~~Lk~~Y~kyLl 127 (187)
-.|-..|.++|. ..|..|+..+.+. .+.|. .+||..|..+|.
T Consensus 26 ~~L~~gV~k~G~-------G~W~~Ia~~~~~~f~~RT~--v~lKdRWrnllk 68 (121)
T 2juh_A 26 EALVEAVEHLGT-------GRWRDVKMRAFDNADHRTY--VDLKDKWKTLVH 68 (121)
T ss_dssp HHHHHHHHHHGG-------GCHHHHHHHHCSCCSSCCS--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-------CCHHHHHHHhccccCCCCH--HHHHHHHHHHHh
Confidence 356777887773 4799999998642 22333 389998888876
No 44
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=37.64 E-value=44 Score=25.14 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=27.7
Q ss_pred hhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHH
Q 029808 77 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 77 y~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl 127 (187)
-.|..+|...|. +.|..||..|. . .+ +.+++..|.++|.
T Consensus 67 ~~L~~~v~~~g~-------~~W~~Ia~~l~--~-Rt--~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 67 QRVIKLVQKYGP-------KRWSVIAKHLK--G-RI--GKQCRERWHNHLN 105 (159)
T ss_dssp HHHHHHHHHHCS-------CCHHHHHHTST--T-CC--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCc-------ccHHHHHHHcC--C-CC--HHHHHHHHHHHhC
Confidence 357777888774 46999999883 2 22 3488888888773
No 45
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=36.47 E-value=84 Score=20.78 Aligned_cols=41 Identities=24% Similarity=0.479 Sum_probs=29.3
Q ss_pred hhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhH
Q 029808 76 LHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLL 126 (187)
Q Consensus 76 Ly~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyL 126 (187)
--.|...|.++|- .|..|+...-+-.+.+++ .||.-|....
T Consensus 16 ~~~L~~gV~k~G~--------~W~~I~~~y~f~~~RT~V--dLKdk~r~L~ 56 (62)
T 1x58_A 16 VNYLFHGVKTMGN--------HWNSILWSFPFQKGRRAV--DLAHKYHRLI 56 (62)
T ss_dssp HHHHHHHHHHHCS--------CHHHHHHHSCCCTTCCHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhH--------hHHHHHHhCCCccCcccc--hHHHHHHHHH
Confidence 3457777887763 699999988875555554 7888887643
No 46
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=36.42 E-value=46 Score=24.18 Aligned_cols=39 Identities=13% Similarity=0.330 Sum_probs=26.9
Q ss_pred hhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHH
Q 029808 77 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 77 y~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~ 128 (187)
-.|..+|.+.|. .|..||..|. . .+ ..++|..|..++..
T Consensus 71 ~~L~~~v~~~G~--------~W~~Ia~~l~--g-Rt--~~~~k~rw~~l~~k 109 (126)
T 3osg_A 71 ALLVQKIQEYGR--------QWAIIAKFFP--G-RT--DIHIKNRWVTISNK 109 (126)
T ss_dssp HHHHHHHHHHCS--------CHHHHHTTST--T-CC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc--------CHHHHHHHcC--C-CC--HHHHHHHHHHHHHh
Confidence 467777888773 6999999764 2 22 23788888776643
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=35.30 E-value=56 Score=20.99 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=29.1
Q ss_pred hHHHHHHhhCCc-cccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhH
Q 029808 78 RLFVEVTSRGGL-GKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLL 126 (187)
Q Consensus 78 ~Ly~~V~~~GG~-~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyL 126 (187)
.|+..|.+.... ..+..++.|.++++.. ++.. .-.+.|..|.++|
T Consensus 12 ~L~~~v~~~~~~~~~~~Gn~iwk~la~~~-~~~H---twqSwRdRy~k~l 57 (59)
T 1fex_A 12 AILTYVKENARSPSSVTGNALWKAMEKSS-LTQH---SWQSLKDRYLKHL 57 (59)
T ss_dssp HHHHHHHHTCCSTTTTTSSHHHHHHHHSC-SSSC---CSHHHHHHHHHHT
T ss_pred HHHHHHHHhccccCCCccHHHHHHHHHhH-CCCC---CHHHHHHHHHHHc
Confidence 466666665211 3577788999999821 3332 1248899999887
No 48
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.84 E-value=40 Score=21.81 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=22.4
Q ss_pred hhcHHHHHHHHHHHHHhcCCCCCCCee
Q 029808 43 AQSSDLFWATLEAFHKSFGDKFKVPTV 69 (187)
Q Consensus 43 ~~~~~~Fl~~L~~F~~~rG~pl~~P~I 69 (187)
.-.|+..++.|+.|+.+.|..+.-|.+
T Consensus 28 ~g~REElvdRLk~Y~~QtGi~lnkP~~ 54 (58)
T 2do5_A 28 QGNREELVERLQSYTRQTGIVLNRPSG 54 (58)
T ss_dssp CSCHHHHHHHHHHHHHHHCCCCCCTTC
T ss_pred cccHHHHHHHHHHHhhccceeecCCCC
Confidence 346999999999999999998865554
No 49
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=32.37 E-value=23 Score=24.54 Aligned_cols=18 Identities=22% Similarity=0.613 Sum_probs=15.8
Q ss_pred hhcHHHHHHHHHHHHHhc
Q 029808 43 AQSSDLFWATLEAFHKSF 60 (187)
Q Consensus 43 ~~~~~~Fl~~L~~F~~~r 60 (187)
+-+-+.|+++|+.|+++|
T Consensus 36 vl~TeeFW~DL~gFL~qR 53 (75)
T 2lo0_A 36 VVATEAFWDDLQGFLEQR 53 (75)
T ss_dssp TTTSHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHh
Confidence 446789999999999998
No 50
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=30.41 E-value=79 Score=23.51 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=27.1
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhC--CCCCCCcHHHHHHHHHHHhHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFN--FPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lg--lp~~~t~a~~~Lk~~Y~kyLl 127 (187)
.|-..|.++|. ..|..|+..+. |+. .| +.+||.-|.++|.
T Consensus 41 ~L~~gV~k~G~-------g~W~~I~~~~~~~~~~-RT--~vdlKdRWrnllk 82 (122)
T 2roh_A 41 LLVEAVEHLGT-------GRWRDVKFRAFENVHH-RT--YVDLKDKWKTLVH 82 (122)
T ss_dssp HHHHHHHHHSS-------SCHHHHHHHHHSSSCC-CC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-------CChHHHHHHhccccCC-CC--HHHHHHHHHHHHh
Confidence 46666777763 37999999763 433 33 3489988888764
No 51
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=28.51 E-value=44 Score=24.64 Aligned_cols=28 Identities=18% Similarity=0.437 Sum_probs=21.8
Q ss_pred chhhHHHHHHhhCCccccccccChHHHHHHhCCCC
Q 029808 75 DLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPT 109 (187)
Q Consensus 75 DLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~ 109 (187)
||-+.|..|.+.=| ..|.++|+.|||..
T Consensus 4 DL~~~f~~Ia~~lG-------~~Wk~LAR~LGlse 31 (122)
T 3ezq_B 4 DLCAAFNVICDNVG-------KDWRRLARQLKVSD 31 (122)
T ss_dssp HHHHHHHHHHTTCC-------TTHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHhhh-------hhHHHHHHHhCCCH
Confidence 67777888775333 47999999999985
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=28.05 E-value=57 Score=23.61 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=28.3
Q ss_pred hhHHHHHHhhCCccccccccChHHHHHHhC--CCCCCCcHHHHHHHHHHHhHH
Q 029808 77 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFN--FPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 77 y~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lg--lp~~~t~a~~~Lk~~Y~kyLl 127 (187)
-.|-..|.+.|. ..|..|+..+. |+. .| ...||..|..+|.
T Consensus 22 ~~L~~gV~k~G~-------g~W~~I~~~~~~~f~~-RT--~v~lKdrWrnllk 64 (105)
T 2aje_A 22 EALVQAVEKLGT-------GRWRDVKLCAFEDADH-RT--YVDLKDKWKTLVH 64 (105)
T ss_dssp HHHHHHHHHHCS-------SSHHHHHSSSSSSTTC-CC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-------CChHHHHHHhccccCC-CC--HHHHHHHHHHHHh
Confidence 357777888774 37999999763 332 33 3489988887764
No 53
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=24.91 E-value=1.2e+02 Score=23.54 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=37.1
Q ss_pred ecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHHHHHHH
Q 029808 73 ALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVY 133 (187)
Q Consensus 73 ~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~fE~~~ 133 (187)
.-+...|++++.+.|-. ...|.+|+..-.+... + ...|+.+|..++..+.+..
T Consensus 12 ~~E~r~fira~~kfG~~-----~~r~~~I~~da~L~~K-s--~~~v~~y~~~f~~~c~~~~ 64 (211)
T 4b4c_A 12 DAEIRRFIKSYKKFGGP-----LERLDAIARDAELVDK-S--ETDLRRLGELVHNGCIKAL 64 (211)
T ss_dssp HHHHHHHHHHHTTCSSG-----GGCHHHHHHHTTCTTS-C--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCc-----hhHHHHHHHHhccCCC-C--HHHHHHHHHHHHHHHHHHH
Confidence 34678899999999842 3479999999888753 2 2377777776666655543
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=22.42 E-value=1.3e+02 Score=20.10 Aligned_cols=35 Identities=14% Similarity=0.367 Sum_probs=23.3
Q ss_pred cccChHHHHHHh---CCCCCCCcHHHHHHHHHHHhHHHHHHH
Q 029808 94 RDRRWKEVVVVF---NFPTTITSASFVLRKYYLSLLYHFEQV 132 (187)
Q Consensus 94 ~~k~W~eVa~~L---glp~~~t~a~~~Lk~~Y~kyLl~fE~~ 132 (187)
....|.+||..| |+..+ +.+.+.-+......|...
T Consensus 32 ~~~~W~~Ia~~m~~~G~~rs----~~qC~~K~~nL~k~Yk~~ 69 (86)
T 2ebi_A 32 NKHLWEQISSKMREKGFDRS----PDMCTDKWRNLLKEFKKA 69 (86)
T ss_dssp CHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHCSC
T ss_pred chHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHHH
Confidence 455999999997 46432 346677777666666543
No 55
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=21.99 E-value=63 Score=21.93 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=19.1
Q ss_pred cChHHHHHHhCCCCCCCcHHHHHHHHHHHhH
Q 029808 96 RRWKEVVVVFNFPTTITSASFVLRKYYLSLL 126 (187)
Q Consensus 96 k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyL 126 (187)
+.|..||+.++--+ ...++++|...+
T Consensus 32 ~rWe~IA~~V~gKT-----~eE~~~hY~~l~ 57 (73)
T 1wgx_A 32 GFWSEVAAAVGSRS-----PEECQRKYMENP 57 (73)
T ss_dssp SHHHHHHHHTTTSC-----HHHHHHHHHHSS
T ss_pred cHHHHHHHHcCCCC-----HHHHHHHHHHHH
Confidence 48999999997521 347888888764
No 56
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.25 E-value=95 Score=21.06 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=15.4
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHhHHHH
Q 029808 102 VVVFNFPTTITSASFVLRKYYLSLLYHF 129 (187)
Q Consensus 102 a~~Lglp~~~t~a~~~Lk~~Y~kyLl~f 129 (187)
.+.||++..++. ..||+.|.+..+.|
T Consensus 30 y~iLgv~~~as~--~eIk~aYr~la~~~ 55 (90)
T 2ys8_A 30 WDMLGVKPGASR--DEVNKAYRKLAVLL 55 (90)
T ss_dssp HHHHTCCTTCCH--HHHHHHHHHHHHHH
T ss_pred HHHcCcCCCCCH--HHHHHHHHHHHHHH
Confidence 456677665432 36777777765544
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=20.74 E-value=2.3e+02 Score=19.99 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=31.5
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHHHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQ 131 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~fE~ 131 (187)
.||..|.+.|- +|..|+..+.......-....||.-|.......-.
T Consensus 40 ~Lf~L~~~fdl--------RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 40 HLFDLSRRFDL--------RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp HHHHHHHHTTT--------CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--------CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46777776665 89999999986431111245899999887765544
No 58
>2d96_A Nuclear factor NF-kappa-B P100 subunit; six helix bundle, processing, proteasome, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.67 E-value=70 Score=23.40 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=21.1
Q ss_pred cccChHHHHHHhCCCC------CCCcHHHHHHHHHH
Q 029808 94 RDRRWKEVVVVFNFPT------TITSASFVLRKYYL 123 (187)
Q Consensus 94 ~~k~W~eVa~~Lglp~------~~t~a~~~Lk~~Y~ 123 (187)
..+.|+.+|.+||+.. ..++.+..|-..|+
T Consensus 29 ~~~~Wr~LA~~L~~~~l~~~f~~~~SPt~~LL~l~E 64 (109)
T 2d96_A 29 AQGSWAELAERLGLRSLVDTYRQTTSPSGSLLRSYE 64 (109)
T ss_dssp CSSCHHHHHHHHTCHHHHHHHHTSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhChhHHHHHHhCCCChHHHHHHHHH
Confidence 3579999999999763 23455566666664
No 59
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=20.38 E-value=78 Score=23.24 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=22.4
Q ss_pred ecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCC
Q 029808 73 ALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTT 110 (187)
Q Consensus 73 ~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~ 110 (187)
.-|+-.||..|...|+ +.|.+++++||+...
T Consensus 10 ~~~~~~l~~i~d~v~~-------~~WK~~aRkLGLse~ 40 (112)
T 1ich_A 10 TDDPATLYAVVENVPP-------LRWKEFVKRLGLSDH 40 (112)
T ss_dssp ---CHHHHHHHHHSCS-------TTHHHHHHHHTCCHH
T ss_pred ccchHHHHHHHHhCCH-------HHHHHHHHHcCCCHH
Confidence 4677788888776554 479999999999863
Done!