Query 029808
Match_columns 187
No_of_seqs 137 out of 511
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 05:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029808.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029808hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ig6a_ a.4.3.1 (A:) MRF-2 DNA 100.0 3.9E-31 2.8E-35 197.7 5.9 104 44-148 2-106 (107)
2 d1ryua_ a.4.3.1 (A:) SWI-SNF c 100.0 1.1E-29 8.1E-34 193.4 6.9 97 44-141 19-116 (120)
3 d1c20a_ a.4.3.1 (A:) DNA-bindi 99.9 3.4E-28 2.5E-32 186.7 9.8 91 44-134 21-112 (128)
4 d1kkxa_ a.4.3.1 (A:) Transcrip 99.9 4.8E-27 3.5E-31 174.1 8.2 88 44-136 3-91 (102)
5 d1guua_ a.4.1.3 (A:) c-Myb, DN 90.6 0.14 1E-05 31.0 3.8 39 78-128 11-49 (50)
6 d1x41a1 a.4.1.1 (A:8-54) Trans 86.7 0.75 5.5E-05 27.2 5.2 36 78-125 11-46 (47)
7 d1w0ua_ a.4.1.4 (A:) Telomeric 85.4 0.6 4.3E-05 28.5 4.4 40 78-127 12-51 (55)
8 d1gvda_ a.4.1.3 (A:) c-Myb, DN 85.0 0.33 2.4E-05 29.6 2.9 39 78-128 13-51 (52)
9 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 82.6 1.6 0.00011 27.0 5.7 39 78-129 12-50 (65)
10 d1gv2a2 a.4.1.3 (A:144-190) c- 77.7 1.5 0.00011 25.8 4.1 36 78-126 11-46 (47)
11 d1w0ta_ a.4.1.4 (A:) DNA-bindi 75.1 2.4 0.00018 25.3 4.6 40 77-126 11-50 (52)
12 d2cjja1 a.4.1.3 (A:8-70) Radia 66.9 9 0.00065 23.3 6.1 46 77-131 10-55 (63)
13 d2ckxa1 a.4.1.3 (A:578-660) Te 55.3 17 0.0012 23.3 6.1 42 78-128 10-52 (83)
14 d2esna1 a.4.5.37 (A:3-91) Prob 54.2 6.1 0.00044 25.6 3.6 67 67-133 1-84 (89)
15 d1siqa2 e.6.1.1 (A:3-238) Glut 51.8 4.6 0.00033 30.2 3.0 30 31-60 3-32 (236)
16 d2iw5b1 a.4.1.3 (B:376-440) RE 49.2 16 0.0011 22.1 4.9 40 76-128 13-52 (65)
17 d1igna1 a.4.1.6 (A:360-445) DN 47.6 4.6 0.00033 26.7 2.1 44 78-128 11-54 (86)
18 d1ug2a_ a.4.1.3 (A:) 2610100b2 47.4 28 0.002 23.3 6.3 34 94-132 54-87 (95)
19 d1gh6a_ a.2.3.1 (A:) Large T a 40.5 6.2 0.00045 26.8 1.9 31 99-129 8-38 (114)
20 d2gf5a1 a.77.1.2 (A:89-191) FA 39.9 12 0.00089 24.4 3.4 31 73-110 6-36 (103)
21 d2cqra1 a.4.1.3 (A:7-66) DnaJ 37.0 15 0.0011 22.0 3.2 38 77-123 21-58 (60)
22 d2axpa1 c.37.1.1 (A:2-165) Hyp 33.6 8.4 0.00061 27.4 1.7 32 68-99 118-151 (164)
23 d1x3ha1 g.39.1.3 (A:8-42) Leup 31.7 6.5 0.00048 21.8 0.7 20 159-180 16-35 (35)
24 d2f76x1 a.61.1.3 (X:1-94) Maso 31.3 65 0.0048 21.1 7.5 54 46-106 8-64 (94)
25 d1fexa_ a.4.1.3 (A:) Rap1 {Hum 30.7 33 0.0024 20.8 4.1 44 79-126 13-57 (59)
26 d1icha_ a.77.1.2 (A:) Tumor ne 29.2 20 0.0015 22.6 3.0 14 97-110 15-28 (87)
27 d1jhfa1 a.4.5.2 (A:2-72) LexA 28.5 60 0.0043 19.8 5.4 35 42-108 3-37 (71)
28 d1fafa_ a.2.3.1 (A:) Large T a 27.2 27 0.002 22.2 3.4 31 99-129 11-41 (79)
29 d1zk8a1 a.4.1.9 (A:6-77) Trans 24.1 68 0.0049 18.9 5.2 49 81-133 13-66 (72)
30 d1v7ba1 a.4.1.9 (A:1-74) Trans 23.8 69 0.005 18.9 6.0 54 78-135 11-69 (74)
31 d1kl9a1 a.60.14.1 (A:89-182) E 23.2 33 0.0024 22.9 3.3 31 98-133 23-53 (94)
32 d1xc5a1 a.4.1.3 (A:413-480) Nu 22.2 49 0.0035 19.9 3.8 35 78-125 27-61 (68)
33 d1fada_ a.77.1.2 (A:) FADD (Mo 22.0 20 0.0015 22.9 1.9 30 73-109 6-35 (95)
34 d1l3la1 a.4.6.2 (A:170-234) Qu 21.4 25 0.0018 21.1 2.1 30 94-125 18-47 (65)
35 d2fd5a1 a.4.1.9 (A:1-76) Proba 20.9 81 0.0059 18.6 6.2 48 82-133 18-70 (76)
36 d2np5a1 a.4.1.9 (A:9-77) Trans 20.3 79 0.0058 18.3 5.6 47 82-132 12-63 (69)
37 d2qtva3 c.62.1.2 (A:120-390) S 20.3 52 0.0038 24.8 4.4 75 17-92 171-252 (271)
38 d1fsea_ a.4.6.2 (A:) Germinati 20.3 26 0.0019 21.0 2.1 29 95-125 19-47 (67)
39 d1hdja_ a.2.3.1 (A:) HSP40 {Hu 20.1 32 0.0023 21.2 2.5 26 102-129 6-31 (77)
No 1
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.96 E-value=3.9e-31 Score=197.70 Aligned_cols=104 Identities=20% Similarity=0.304 Sum_probs=96.1
Q ss_pred hcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHH
Q 029808 44 QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 122 (187)
Q Consensus 44 ~~~~~Fl~~L~~F~~~rG~pl-~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y 122 (187)
.+++.|+++|.+||++||+++ ++|.|+|++||||+||.+|+++|||++|+.+++|.+||++||++.++++++..||++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~ia~~lg~~~~~~~~~~~Lk~~Y 81 (107)
T d1ig6a_ 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCCCCcCCeECCccccHHHHHHHHHHhCChhhccccccHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 478999999999999999998 7999999999999999999999999999999999999999999998899999999999
Q ss_pred HHhHHHHHHHHHhhccCCCCCCCCCC
Q 029808 123 LSLLYHFEQVYYFRKEAPSSSMPDAV 148 (187)
Q Consensus 123 ~kyLl~fE~~~~~~~~~~~~~~~~~~ 148 (187)
++||++||+++ .+.++.+.++++|.
T Consensus 82 ~~~L~~yE~~~-~~~~~~~~p~~~~r 106 (107)
T d1ig6a_ 82 ERLILPYERFI-KGEEDKPLPPIKPR 106 (107)
T ss_dssp HHHTTTTHHHH-HHHTSSSSCTTCSC
T ss_pred HHHHHHHHHHH-hcCCCCCCCCCCCC
Confidence 99999999966 55666677777664
No 2
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.95 E-value=1.1e-29 Score=193.38 Aligned_cols=97 Identities=32% Similarity=0.534 Sum_probs=91.1
Q ss_pred hcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHH
Q 029808 44 QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 122 (187)
Q Consensus 44 ~~~~~Fl~~L~~F~~~rG~pl-~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y 122 (187)
.+++.|++.|.+||++||+++ ++|.|+||+||||+||.+|+++|||++|+++++|.+||+.||++. ++++++.||++|
T Consensus 19 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gr~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~l~~~~-~~~~~~~Lk~~Y 97 (120)
T d1ryua_ 19 PERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGT-SSSAASSLKKQY 97 (120)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCCSCCSSSSCCHHHHHHHHHHHTCTTGGGTSSHHHHHHHHTTSCC-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCcCCeECCeeccHHHHHHHHHHhcCHHhhcccchHHHHHHHhCCCC-CCCHHHHHHHHH
Confidence 467789999999999999999 799999999999999999999999999999999999999999986 678999999999
Q ss_pred HHhHHHHHHHHHhhccCCC
Q 029808 123 LSLLYHFEQVYYFRKEAPS 141 (187)
Q Consensus 123 ~kyLl~fE~~~~~~~~~~~ 141 (187)
.+||++||+++.+++++|+
T Consensus 98 ~r~L~~yE~~~~~~~~~p~ 116 (120)
T d1ryua_ 98 IQCLYAFECKIERGEDPPP 116 (120)
T ss_dssp HHHTTTTTTTTTTTTSCCC
T ss_pred HHHHHHHHHHHHcCCCCCc
Confidence 9999999999988887654
No 3
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.95 E-value=3.4e-28 Score=186.74 Aligned_cols=91 Identities=33% Similarity=0.584 Sum_probs=87.1
Q ss_pred hcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHH
Q 029808 44 QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 122 (187)
Q Consensus 44 ~~~~~Fl~~L~~F~~~rG~pl-~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y 122 (187)
.+++.|++.|.+||++||+++ ++|.|+||+||||+||.+|+++|||++|+.+++|.+||+.||++.+++++++.||.+|
T Consensus 21 ~er~~F~~~L~~f~~~rg~~~~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y 100 (128)
T d1c20a_ 21 PKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQY 100 (128)
T ss_dssp HHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCcCCeECCeeccHHHHHHHHHHhcCHHHhcccccHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 468899999999999999999 7999999999999999999999999999999999999999999998899999999999
Q ss_pred HHhHHHHHHHHH
Q 029808 123 LSLLYHFEQVYY 134 (187)
Q Consensus 123 ~kyLl~fE~~~~ 134 (187)
.+||++||++..
T Consensus 101 ~k~L~~fE~~~~ 112 (128)
T d1c20a_ 101 MKYLYPYECEKK 112 (128)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999753
No 4
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.93 E-value=4.8e-27 Score=174.09 Aligned_cols=88 Identities=22% Similarity=0.408 Sum_probs=81.5
Q ss_pred hcHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHH
Q 029808 44 QSSDLFWATLEAFHKSFGDKF-KVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYY 122 (187)
Q Consensus 44 ~~~~~Fl~~L~~F~~~rG~pl-~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y 122 (187)
.+.+.|++.|.+||++||+++ ++|.|+|++||||+||.+|+++|||++|+++++|.+||++||++. +.+||++|
T Consensus 3 ~~~e~F~~~L~~f~~~rg~~~~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~-----~~~lr~~Y 77 (102)
T d1kkxa_ 3 KQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQLESIY 77 (102)
T ss_dssp CHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcCCeECCeeeeHHHHHHHHHHHcChHHhcccCcHHHHHHHHCCCh-----HHHHHHHH
Confidence 578999999999999999999 799999999999999999999999999999999999999999874 45899999
Q ss_pred HHhHHHHHHHHHhh
Q 029808 123 LSLLYHFEQVYYFR 136 (187)
Q Consensus 123 ~kyLl~fE~~~~~~ 136 (187)
++||++||+++...
T Consensus 78 ~~~L~~yE~~~~~~ 91 (102)
T d1kkxa_ 78 FRILLPYERHMISQ 91 (102)
T ss_dssp HHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999976333
No 5
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=90.62 E-value=0.14 Score=30.99 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=28.7
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~ 128 (187)
.|...|.+.|. +.|..||..|+- .+ +.+++..|.+||.|
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~---Rt--~~qcr~Rw~~~L~P 49 (50)
T d1guua_ 11 KLKKLVEQNGT-------DDWKVIANYLPN---RT--DVQCQHRWQKVLNP 49 (50)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTSTT---CC--HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCC-------CCHHHHHHHHCC---CC--HHHHHHHHHhhCCC
Confidence 56677887773 259999998852 22 44999999999854
No 6
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.67 E-value=0.75 Score=27.23 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=26.1
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHh
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 125 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~ky 125 (187)
+|-.+|+..| .+.|..||..|+-- + +.+.+..|.+|
T Consensus 11 ~L~~~v~~~G-------~~nW~~Ia~~~~~R---t--~~Qcr~r~~~~ 46 (47)
T d1x41a1 11 ALLEAVMDCG-------FGNWQDVANQMCTK---T--KEECEKHYMKY 46 (47)
T ss_dssp HHHHHHHHTC-------TTCHHHHHHHHTTS---C--HHHHHHHHHHH
T ss_pred HHHHHHHHHC-------CccHHHHHHHcCCC---C--HHHHHHHHHHh
Confidence 5667787766 23699999999832 2 44888888875
No 7
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.43 E-value=0.6 Score=28.55 Aligned_cols=40 Identities=13% Similarity=0.335 Sum_probs=28.8
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLY 127 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl 127 (187)
.|...|.+.| .+.|..|+..+.+... + +.+++.-|.+++.
T Consensus 12 ~L~~~V~~~G-------~~~W~~I~~~~~~~~R-t--~~q~k~Rwrn~~k 51 (55)
T d1w0ua_ 12 WVKAGVQKYG-------EGNWAAISKNYPFVNR-T--AVMIKDRWRTMKR 51 (55)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHSCCSSC-C--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------CChHHHHHhhcCCCCc-C--HHHHHHHHHHHhc
Confidence 5677788877 1269999999887643 2 3489998887654
No 8
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=85.01 E-value=0.33 Score=29.57 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=28.2
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~ 128 (187)
+|-..|.+.|- +.|..||..|+- .+ +.+++.-|.+||.|
T Consensus 13 ~L~~~v~~~g~-------~~W~~Ia~~l~~---Rt--~~qc~~Rw~~~L~P 51 (52)
T d1gvda_ 13 RLIKLVQKYGP-------KRWSVIAKHLKG---RI--GKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHCT-------TCHHHHHTTSTT---CC--HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCC-------CCHHHHHHHHCC---CC--HHHHHHHHHhhCCC
Confidence 56677777762 369999999852 22 34899999998854
No 9
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.62 E-value=1.6 Score=26.99 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=28.1
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHF 129 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~f 129 (187)
.|..+|...|. .|..||..|+- . + ..+++..|.++|.+-
T Consensus 12 ~l~~~~~~~G~--------~W~~Ia~~~~~-R--t--~~q~k~ry~~~~~~~ 50 (65)
T d2cu7a1 12 LFEQGLAKFGR--------RWTKISKLIGS-R--T--VLQVKSYARQYFKNK 50 (65)
T ss_dssp HHHHHHHHTCS--------CHHHHHHHHSS-S--C--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--------hHHHHHHHcCC-C--C--HHHHHHHHHHHHHHH
Confidence 45666776663 69999999862 2 2 338999999888754
No 10
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=77.74 E-value=1.5 Score=25.81 Aligned_cols=36 Identities=17% Similarity=0.358 Sum_probs=25.9
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLL 126 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyL 126 (187)
.|...|.+.| +.|..||..|. . .+ +.++|..|..+|
T Consensus 11 ~L~~~v~~~G--------~~W~~Ia~~~~--g-Rt--~~~~knr~~~~l 46 (47)
T d1gv2a2 11 IIYQAHKRLG--------NRWAEIAKLLP--G-RT--DNAIKNHWNSTM 46 (47)
T ss_dssp HHHHHHHHHS--------SCHHHHHTTCT--T-CC--HHHHHHHHHHHT
T ss_pred HHHHHHHHHh--------hHHHHHHhHcC--C-CC--HHHHHHHHHHHc
Confidence 4667777777 37999999763 2 22 348999998876
No 11
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.08 E-value=2.4 Score=25.31 Aligned_cols=40 Identities=20% Similarity=0.458 Sum_probs=27.4
Q ss_pred hhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhH
Q 029808 77 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLL 126 (187)
Q Consensus 77 y~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyL 126 (187)
-.|...|.+.|- ..|..|+..+.+... + +.+++.-|.+++
T Consensus 11 ~~L~~~v~~~G~-------~~W~~I~~~~~~~~R-t--~~q~r~Rw~nl~ 50 (52)
T d1w0ta_ 11 KNLRSGVRKYGE-------GNWSKILLHYKFNNR-T--SVMLKDRWRTMK 50 (52)
T ss_dssp HHHHHHHHHHCT-------TCHHHHHHHSCCSSC-C--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-------CCHHHHHhhcCCCCC-C--HHHHHHHHHHHH
Confidence 357788888772 279999998876543 2 337888776653
No 12
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=66.88 E-value=9 Score=23.30 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=30.0
Q ss_pred hhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHHHHH
Q 029808 77 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQ 131 (187)
Q Consensus 77 y~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~fE~ 131 (187)
-.|..+|...|. .....|..||..|+-- + +.+++..|.+.+.....
T Consensus 10 ~~L~~~v~~~~~----~~~~~W~~Ia~~l~gR---t--~~qc~~r~~~L~~dik~ 55 (63)
T d2cjja1 10 KAFERALAVYDK----DTPDRWANVARAVEGR---T--PEEVKKHYEILVEDIKY 55 (63)
T ss_dssp HHHHHHHHHSCT----TCTTHHHHHHHHSTTC---C--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CCchHHHHHHHHcCCC---C--HHHHHHHHHHHHHHhhc
Confidence 356777777764 2234799999999622 1 34888889665554443
No 13
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=55.33 E-value=17 Score=23.25 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=29.5
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCC-CCCcHHHHHHHHHHHhHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPT-TITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~-~~t~a~~~Lk~~Y~kyLl~ 128 (187)
.|-..|.+.|.. .|..|+..+.+.. +.+ +.+++.-|.++|.+
T Consensus 10 ~L~~~V~~~G~~-------~W~~I~~~~~~~~~~Rt--~~qck~RWrn~l~~ 52 (83)
T d2ckxa1 10 ALVEAVEHLGTG-------RWRDVKMRAFDNADHRT--YVDLKDKWKTLVHT 52 (83)
T ss_dssp HHHHHHHHHCSS-------CHHHHHHHHCTTCTTSC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcc-------cHHHHHHHHHhhccCCC--HHHHHHHHHHHhhh
Confidence 567788888852 6999999875321 222 34899999988843
No 14
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=54.24 E-value=6.1 Score=25.60 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=42.9
Q ss_pred CeeCCeecchhhHHHHHHhhCCccccccc---------cChHHHHHHhCCCC----C----CCcHHHHHHHHHHHhHHHH
Q 029808 67 PTVGGKALDLHRLFVEVTSRGGLGKVIRD---------RRWKEVVVVFNFPT----T----ITSASFVLRKYYLSLLYHF 129 (187)
Q Consensus 67 P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~---------k~W~eVa~~Lglp~----~----~t~a~~~Lk~~Y~kyLl~f 129 (187)
|.+..-++++++.|..|.+.|.+.++.+. +.=.++=+.+|.+- + -|..+..|-....+.|..+
T Consensus 1 p~l~~ldl~~L~~f~~v~~~gs~t~AA~~l~isq~avs~~l~~lE~~~g~~Lf~R~~~~~~lT~~g~~l~~~~~~~l~~l 80 (89)
T d2esna1 1 PLLRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRAL 80 (89)
T ss_dssp CCTTTSCTTHHHHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEEETTEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHhCCHHHHHHHHCCCCcHhhHHHHHHHhcCCceeEEECCCceeECHHHHHHHHHHHHHHHHH
Confidence 45556678889999999999998776553 12223334455542 0 2566777777777777777
Q ss_pred HHHH
Q 029808 130 EQVY 133 (187)
Q Consensus 130 E~~~ 133 (187)
|...
T Consensus 81 ~~~~ 84 (89)
T d2esna1 81 GEGL 84 (89)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6653
No 15
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.77 E-value=4.6 Score=30.15 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=27.6
Q ss_pred CCCCCCCCchhhhhcHHHHHHHHHHHHHhc
Q 029808 31 YYPPPTAKYEDIAQSSDLFWATLEAFHKSF 60 (187)
Q Consensus 31 ~w~PPf~~~~d~~~~~~~Fl~~L~~F~~~r 60 (187)
+|+-||..+.+++++.+.|.++.++|.+++
T Consensus 3 ~~~d~~~~d~~Lteeq~~l~d~~r~f~~~~ 32 (236)
T d1siqa2 3 DWQDPLVLEEQLTTDEILIRDTFRTYCQER 32 (236)
T ss_dssp CTTSTTCGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccccCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999875
No 16
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.18 E-value=16 Score=22.11 Aligned_cols=40 Identities=5% Similarity=0.148 Sum_probs=28.2
Q ss_pred hhhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHH
Q 029808 76 LHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 76 Ly~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~ 128 (187)
.-.|..+|...|- .|..||..|+--+ ..+++..|.++...
T Consensus 13 ~~~f~~~~~~~G~--------~w~~Ia~~~~~kt-----~~q~~~~y~~~~k~ 52 (65)
T d2iw5b1 13 QLLAVQAIRKYGR--------DFQAISDVIGNKS-----VVQVKNFFVNYRRR 52 (65)
T ss_dssp HHHHHHHHHHHSS--------CHHHHHHHHSSCC-----HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhCc--------hHHHHHHHcCCCC-----HHHHHHHHHHHHhh
Confidence 3456667777772 5999999986321 34899999887644
No 17
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.60 E-value=4.6 Score=26.69 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=28.8
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHH
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYH 128 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~ 128 (187)
.|...|...|-.. +....|..||..|.- .+ +.++|.-|.++|.+
T Consensus 11 ~L~~~v~~~g~~~--~~~~~W~~IA~~lpg---Rt--~~qcr~Rw~~~L~p 54 (86)
T d1igna1 11 FILDVVRKNPTRR--TTHTLYDEISHYVPN---HT--GNSIRHRFRVYLSK 54 (86)
T ss_dssp HHHHHHHTSGGGT--TCSHHHHHHTTTSTT---SC--HHHHHHHHHHTTGG
T ss_pred HHHHHHHHhCcCc--CCccCHHHHHHHcCC---CC--HHHHHHHHHHHcCc
Confidence 3556666665432 122369999998742 22 45899999999977
No 18
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Probab=47.36 E-value=28 Score=23.35 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=26.1
Q ss_pred cccChHHHHHHhCCCCCCCcHHHHHHHHHHHhHHHHHHH
Q 029808 94 RDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQV 132 (187)
Q Consensus 94 ~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~fE~~ 132 (187)
..+.|..|+..|+--. ..++|.-|...+.-|+..
T Consensus 54 ~~~tw~~Ia~~L~~Rs-----~~qvr~Rf~~Lm~lf~~~ 87 (95)
T d1ug2a_ 54 QPHTFSVISQQLGNKT-----PVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp CTTTHHHHHHHHSSCC-----HHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHHh
Confidence 3567999999996443 238999998888888764
No 19
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=40.53 E-value=6.2 Score=26.82 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=22.2
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHhHHHH
Q 029808 99 KEVVVVFNFPTTITSASFVLRKYYLSLLYHF 129 (187)
Q Consensus 99 ~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~f 129 (187)
.+....||++..++.....||++|.+..+.|
T Consensus 8 ~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~ 38 (114)
T d1gh6a_ 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEF 38 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4677889998876544458999998776543
No 20
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.93 E-value=12 Score=24.42 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=22.6
Q ss_pred ecchhhHHHHHHhhCCccccccccChHHHHHHhCCCCC
Q 029808 73 ALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTT 110 (187)
Q Consensus 73 ~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~ 110 (187)
+-||-..|..|.+ +|. +.|..+|+.||++..
T Consensus 6 ~~dl~~~f~~ia~-----~lg--~~W~~La~~Lgl~~~ 36 (103)
T d2gf5a1 6 EEDLCAAFNVICD-----NVG--KDWRRLARQLKVSDT 36 (103)
T ss_dssp HHHHHHHHHHHHH-----SCC--TTHHHHHHHTTCCHH
T ss_pred hhhHHHHHHHHHH-----HHH--HhHHHHHHHcCCCHH
Confidence 4467777887764 332 369999999999863
No 21
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.01 E-value=15 Score=21.99 Aligned_cols=38 Identities=8% Similarity=-0.023 Sum_probs=24.3
Q ss_pred hhHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHH
Q 029808 77 HRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYL 123 (187)
Q Consensus 77 y~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~ 123 (187)
-.|..+|...|.- ..+.|..||..|+- .+ +.+++..|.
T Consensus 21 ~~L~~~v~~~~~~----~~~~W~~IA~~l~~---Rt--~~qc~~R~~ 58 (60)
T d2cqra1 21 KLLELALQQYPRG----SSDCWDKIARCVPS---KS--KEDCIARYK 58 (60)
T ss_dssp HHHHHHHHHSCSS----SHHHHHHHGGGCSS---SC--HHHHHHHHH
T ss_pred HHHHHHHHHcCCc----cchHHHHHHHHcCC---CC--HHHHHHHHH
Confidence 4677788877642 23479999999862 22 236666664
No 22
>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}
Probab=33.62 E-value=8.4 Score=27.40 Aligned_cols=32 Identities=34% Similarity=0.620 Sum_probs=25.4
Q ss_pred eeCCeecc-hhhHHHHHHhhCCccccccc-cChH
Q 029808 68 TVGGKALD-LHRLFVEVTSRGGLGKVIRD-RRWK 99 (187)
Q Consensus 68 ~I~gk~VD-Ly~Ly~~V~~~GG~~~V~~~-k~W~ 99 (187)
.|.|+.+| +..||++|+...|...-+-. .+|.
T Consensus 118 yiegkdidsilelyrevmsnaglhtyswdtgqws 151 (164)
T d2axpa1 118 YIEGKDIDSILELYREVMSNAGLHTYSWDTGQWS 151 (164)
T ss_dssp SCCSSHHHHHHHHHHHHHHTCSSCEEEEETTTSC
T ss_pred ccccCCHHHHHHHHHHHHhcCCceeeecccCCcc
Confidence 57899998 46899999999998876533 4774
No 23
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.75 E-value=6.5 Score=21.76 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=16.2
Q ss_pred CCCCCccccccCCCCCCCCCcc
Q 029808 159 SPEEGSTINQLGGQGMFHPRHF 180 (187)
Q Consensus 159 ~p~~~~~~~~~~~~~~~~~~~~ 180 (187)
.|+.|..|+-||. -+||.||
T Consensus 16 ~~I~g~~v~Al~~--~wHpeCF 35 (35)
T d1x3ha1 16 RPVLENYLSAMDT--VWHPECF 35 (35)
T ss_dssp CBCCSSCEEETTE--EECTTTC
T ss_pred CcccchheeecCC--ccCcccC
Confidence 5777889999985 5999887
No 24
>d2f76x1 a.61.1.3 (X:1-94) Mason-Pfizer monkey virus matrix protein {Simian Mason-Pfizer virus [TaxId: 11855]}
Probab=31.32 E-value=65 Score=21.12 Aligned_cols=54 Identities=24% Similarity=0.240 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeeCCeecchhhHHHHHHhhCCccccc---cccChHHHHHHhC
Q 029808 46 SDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVI---RDRRWKEVVVVFN 106 (187)
Q Consensus 46 ~~~Fl~~L~~F~~~rG~pl~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~---~~k~W~eVa~~Lg 106 (187)
...|+..|...+++||..+ +.=||.+||..|.+.-=.--.. .-+.|..|.+.|.
T Consensus 8 ~~~~i~~Lk~lLk~rGvkV-------~~~~L~~f~~~I~~~cPWFp~~Gtl~~~~W~kvG~~l~ 64 (94)
T d2f76x1 8 HERYVEQLKQALKTRGVKV-------KYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQ 64 (94)
T ss_dssp HHHHHHHHHHHHHTTTCCC-------CHHHHHHHHHHHHHHCCCCCCCSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCeec-------CHHHHHHHHHHHHHhCCCccccCCccHHHHHHHHHHHH
Confidence 3689999999999999976 4468889999987653221111 1248999999883
No 25
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.74 E-value=33 Score=20.83 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=27.3
Q ss_pred HHHHHHhhCCc-cccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHhH
Q 029808 79 LFVEVTSRGGL-GKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLL 126 (187)
Q Consensus 79 Ly~~V~~~GG~-~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyL 126 (187)
|+..|.+.... ..++-++.|.+++++ .++... -.+.|..|.|.|
T Consensus 13 l~~yv~~~~~~~~~~~Gn~iwk~l~~~-~~~~Ht---wQSwrdRY~K~L 57 (59)
T d1fexa_ 13 ILTYVKENARSPSSVTGNALWKAMEKS-SLTQHS---WQSLKDRYLKHL 57 (59)
T ss_dssp HHHHHHHTCCSTTTTTSSHHHHHHHHS-CSSSCC---SHHHHHHHHHHT
T ss_pred HHHHHHHhccCcCCccHHHHHHHHHHh-cCCCCC---HHHHHHHHHHHh
Confidence 45555443221 356777799998853 344321 238999999987
No 26
>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.21 E-value=20 Score=22.58 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=12.5
Q ss_pred ChHHHHHHhCCCCC
Q 029808 97 RWKEVVVVFNFPTT 110 (187)
Q Consensus 97 ~W~eVa~~Lglp~~ 110 (187)
.|..+|+.|||...
T Consensus 15 ~Wk~lar~LGls~~ 28 (87)
T d1icha_ 15 RWKEFVKRLGLSDH 28 (87)
T ss_dssp THHHHHHHHTCCHH
T ss_pred HHHHHHHHhCcCHH
Confidence 69999999999863
No 27
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=28.45 E-value=60 Score=19.75 Aligned_cols=35 Identities=9% Similarity=0.106 Sum_probs=28.6
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCCCCCeeCCeecchhhHHHHHHhhCCccccccccChHHHHHHhCCC
Q 029808 42 IAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFP 108 (187)
Q Consensus 42 ~~~~~~~Fl~~L~~F~~~rG~pl~~P~I~gk~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp 108 (187)
++...+.+++-+.+|+.+.|.+- ...+|++.||+.
T Consensus 3 LT~rQ~~vL~~I~~~~~~~G~~P--------------------------------s~rei~~~~g~~ 37 (71)
T d1jhfa1 3 LTARQQEVFDLIRDHISQTGMPP--------------------------------TRAEIAQRLGFR 37 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCC--------------------------------CHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHHHhCCCC--------------------------------CHHHHHHHcCCC
Confidence 35667888899999999998752 589999999996
No 28
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=27.21 E-value=27 Score=22.16 Aligned_cols=31 Identities=6% Similarity=0.137 Sum_probs=21.2
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHhHHHH
Q 029808 99 KEVVVVFNFPTTITSASFVLRKYYLSLLYHF 129 (187)
Q Consensus 99 ~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~f 129 (187)
.+..+.||+++++..-...||+.|.+....|
T Consensus 11 ~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~ 41 (79)
T d1fafa_ 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLL 41 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4556788998875323348999998876543
No 29
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=24.10 E-value=68 Score=18.91 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=34.4
Q ss_pred HHHHhhCCccccccccChHHHHHHhCCCCC-----CCcHHHHHHHHHHHhHHHHHHHH
Q 029808 81 VEVTSRGGLGKVIRDRRWKEVVVVFNFPTT-----ITSASFVLRKYYLSLLYHFEQVY 133 (187)
Q Consensus 81 ~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~-----~t~a~~~Lk~~Y~kyLl~fE~~~ 133 (187)
..+....|++.++ =.+||+++|+..+ ..+-...+..+...++..+....
T Consensus 13 ~~l~~~~G~~~~t----~~~Ia~~agvs~~slY~yF~~k~~L~~~~~~~~~~~~~~~l 66 (72)
T d1zk8a1 13 AEIADANGVQEVT----LASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIKKLHNRL 66 (72)
T ss_dssp HHHHHHHCGGGCC----HHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccc----HHHHHHHhCCCHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3456677899887 7799999999864 34555566666666666665544
No 30
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=23.80 E-value=69 Score=18.92 Aligned_cols=54 Identities=9% Similarity=0.053 Sum_probs=37.3
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCC-----CCcHHHHHHHHHHHhHHHHHHHHHh
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTT-----ITSASFVLRKYYLSLLYHFEQVYYF 135 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~-----~t~a~~~Lk~~Y~kyLl~fE~~~~~ 135 (187)
.--..+...-||..++ =.+||+..|+..+ ..+-...+..+...++..|......
T Consensus 11 ~aa~~l~~~~G~~~~s----~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~l~~ 69 (74)
T d1v7ba1 11 RTAIDYIGEYSLETLS----YDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKELRD 69 (74)
T ss_dssp HHHHHHHHHSCSTTCC----HHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccC----HHHHHHHhCcCcchHhhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566778888887 7899999999875 2444556666677777777665543
No 31
>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.23 E-value=33 Score=22.91 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=25.5
Q ss_pred hHHHHHHhCCCCCCCcHHHHHHHHHHHhHHHHHHHH
Q 029808 98 WKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVY 133 (187)
Q Consensus 98 W~eVa~~Lglp~~~t~a~~~Lk~~Y~kyLl~fE~~~ 133 (187)
=+.||+.++++.+ ..|-..|++.-+||.+.|
T Consensus 23 lRhVAe~~~~~~~-----~~lE~LY~~iaWpl~~ky 53 (94)
T d1kl9a1 23 LRHVAEVLEYTKD-----EQLESLFQRTAWVFDDKY 53 (94)
T ss_dssp HHHHHHHTTCCSH-----HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHhCCCcc-----ccHHHHHHHhhcccHHHh
Confidence 4678889998753 389999999999998876
No 32
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.22 E-value=49 Score=19.86 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=22.0
Q ss_pred hHHHHHHhhCCccccccccChHHHHHHhCCCCCCCcHHHHHHHHHHHh
Q 029808 78 RLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 125 (187)
Q Consensus 78 ~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~ky 125 (187)
.|..+|...| +.|..||..|+-- + ..+++..|..+
T Consensus 27 ~f~~~~~~~G--------~~w~~Ia~~~~~r---t--~~q~~~~yy~~ 61 (68)
T d1xc5a1 27 TFREKFMQHP--------KNFGLIASFLERK---T--VAECVLYYYLT 61 (68)
T ss_dssp HHHHHHHHTT--------SCSSSHHHHTTTS---C--HHHHHHHHHHH
T ss_pred HHHHHHHHHC--------CcHHHHHHHcCCC---C--HHHHHHHHHHH
Confidence 4555566655 2599999987532 1 23788887543
No 33
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.05 E-value=20 Score=22.91 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=22.4
Q ss_pred ecchhhHHHHHHhhCCccccccccChHHHHHHhCCCC
Q 029808 73 ALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPT 109 (187)
Q Consensus 73 ~VDLy~Ly~~V~~~GG~~~V~~~k~W~eVa~~Lglp~ 109 (187)
+.||-..|..|.+.=| ..|..+|+.||++.
T Consensus 6 ~~~l~~~f~~ia~~lg-------~~Wk~Lar~Lgls~ 35 (95)
T d1fada_ 6 EAYLQVAFDIVCDNVG-------RDWKRLARELKVSE 35 (95)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHTTCCH
T ss_pred HhhHHHHHHHHHHHHH-------HhHHHHHHHcCCCH
Confidence 3567777888775322 36999999999985
No 34
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=21.40 E-value=25 Score=21.08 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=21.5
Q ss_pred cccChHHHHHHhCCCCCCCcHHHHHHHHHHHh
Q 029808 94 RDRRWKEVVVVFNFPTTITSASFVLRKYYLSL 125 (187)
Q Consensus 94 ~~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~ky 125 (187)
....=.+||+.|++... ++-..++++|.|+
T Consensus 18 ~G~s~~eIA~~l~iS~~--TV~~~~~~i~~Kl 47 (65)
T d1l3la1 18 VGKTMEEIADVEGVKYN--SVRVKLREAMKRF 47 (65)
T ss_dssp TTCCHHHHHHHHTCCHH--HHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHCCCHH--HHHHHHHHHHHHc
Confidence 34566899999999863 4556777777764
No 35
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.94 E-value=81 Score=18.64 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=35.2
Q ss_pred HHHhhCCccccccccChHHHHHHhCCCCC-----CCcHHHHHHHHHHHhHHHHHHHH
Q 029808 82 EVTSRGGLGKVIRDRRWKEVVVVFNFPTT-----ITSASFVLRKYYLSLLYHFEQVY 133 (187)
Q Consensus 82 ~V~~~GG~~~V~~~k~W~eVa~~Lglp~~-----~t~a~~~Lk~~Y~kyLl~fE~~~ 133 (187)
.+...-||+.++ -.+||++.|+..+ ..+-...+..++.+++..+....
T Consensus 18 ~l~~~~G~~~~s----i~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~~~~l 70 (76)
T d2fd5a1 18 QALLERGAVEPS----VGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELL 70 (76)
T ss_dssp HHHHHHTTTSCC----HHHHHHHTTCCGGGGGGTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccccc----HHHHHHHhCCCccchhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344556788886 8999999999875 35556677777777777777654
No 36
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=20.32 E-value=79 Score=18.29 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=32.4
Q ss_pred HHHhhCCccccccccChHHHHHHhCCCCC-----CCcHHHHHHHHHHHhHHHHHHH
Q 029808 82 EVTSRGGLGKVIRDRRWKEVVVVFNFPTT-----ITSASFVLRKYYLSLLYHFEQV 132 (187)
Q Consensus 82 ~V~~~GG~~~V~~~k~W~eVa~~Lglp~~-----~t~a~~~Lk~~Y~kyLl~fE~~ 132 (187)
.+...-||+.++ ..+||++.|++.+ ..+-...+..++..++..+...
T Consensus 12 ~l~~~~G~~~~t----i~~Ia~~agvs~~~iy~~F~sK~~L~~~~~~~~~~~~~~~ 63 (69)
T d2np5a1 12 DVAAESGLEGAS----VREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKLLAR 63 (69)
T ss_dssp HHHHHHCGGGCC----HHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccccC----HHHHHHHhCCCHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 455677888886 8999999999875 2444545666666666555543
No 37
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.30 E-value=52 Score=24.80 Aligned_cols=75 Identities=11% Similarity=0.045 Sum_probs=53.5
Q ss_pred CCCCCCccccCCCCCCCCCCCCchh-------hhhcHHHHHHHHHHHHHhcCCCCCCCeeCCeecchhhHHHHHHhhCCc
Q 029808 17 SNSNSNNNNSKASSYYPPPTAKYED-------IAQSSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGL 89 (187)
Q Consensus 17 ~~~~sgi~~i~pp~~w~PPf~~~~d-------~~~~~~~Fl~~L~~F~~~rG~pl~~P~I~gk~VDLy~Ly~~V~~~GG~ 89 (187)
.+.+.|+.+++. +.-+.+...+.| .......|++.|..=+.+.|..+.+-......+||..|-..+..-||.
T Consensus 171 g~pt~GpG~l~~-r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s~~~~dl~~l~~l~~~TGG~ 249 (271)
T d2qtva3 171 GPGTVAPGLIVN-SELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGV 249 (271)
T ss_dssp SCCCSSSSCSSC-SBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCCSHHHHTHHHHTTTCC
T ss_pred CCCCCCCccccc-cccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEecCccCChHHHHhHHhhCCce
Confidence 344667766643 333333333222 234678899999999999999888778888999999999999999995
Q ss_pred ccc
Q 029808 90 GKV 92 (187)
Q Consensus 90 ~~V 92 (187)
--.
T Consensus 250 v~~ 252 (271)
T d2qtva3 250 LLL 252 (271)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 38
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=20.29 E-value=26 Score=21.00 Aligned_cols=29 Identities=14% Similarity=0.128 Sum_probs=20.1
Q ss_pred ccChHHHHHHhCCCCCCCcHHHHHHHHHHHh
Q 029808 95 DRRWKEVVVVFNFPTTITSASFVLRKYYLSL 125 (187)
Q Consensus 95 ~k~W~eVa~~Lglp~~~t~a~~~Lk~~Y~ky 125 (187)
...=.+||+.||+... ++-..++.+|.|+
T Consensus 19 G~s~~eIA~~L~is~~--TV~~~~~~i~~Kl 47 (67)
T d1fsea_ 19 DKTTKEIASELFISEK--TVRNHISNAMQKL 47 (67)
T ss_dssp TCCHHHHHHHHTSCHH--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCHH--HHHHHHHHHHHHc
Confidence 3456799999999753 3555677777663
No 39
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.08 E-value=32 Score=21.24 Aligned_cols=26 Identities=4% Similarity=0.137 Sum_probs=17.6
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHhHHHH
Q 029808 102 VVVFNFPTTITSASFVLRKYYLSLLYHF 129 (187)
Q Consensus 102 a~~Lglp~~~t~a~~~Lk~~Y~kyLl~f 129 (187)
.+.||+++.++ ...|++.|.+.++.|
T Consensus 6 Y~iLgv~~~as--~~eIk~ay~~l~~~~ 31 (77)
T d1hdja_ 6 YQTLGLARGAS--DEEIKRAYRRQALRY 31 (77)
T ss_dssp HHHHTCCTTCC--HHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCcC--HHHHHHHHHHHHHHh
Confidence 56788887643 237888888766554
Done!