BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029809
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZE8|LBD39_ARATH LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39
PE=2 SV=1
Length = 240
Score = 187 bits (475), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 87/112 (77%), Positives = 103/112 (91%), Gaps = 1/112 (0%)
Query: 1 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
MSCNGCRVLRKGCSETCILR CLQWI++ E+QG+AT+F+AKFFGR+ L+SFI++VP+ QR
Sbjct: 1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60
Query: 61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTA 112
PALFQSLLFEACGRTVNPV+GAVG+L + NWHVC+AAVETVL GGTL RP +
Sbjct: 61 PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTL-RPIS 111
>sp|Q9SN23|LBD38_ARATH LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38
PE=2 SV=1
Length = 247
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 84/107 (78%), Positives = 100/107 (93%)
Query: 1 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
MSCNGCRVLRKGCSE CILR C+QWI++PEAQG+AT+F+AKFFGR+ L+SFI+AVP+ Q
Sbjct: 1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60
Query: 61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTL 107
PALFQSLL+EACGRTVNPV+GAVGLL +GNW+VC+AAVETVL GG+L
Sbjct: 61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSL 107
>sp|Q9FN11|LBD37_ARATH LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37
PE=2 SV=1
Length = 250
Score = 183 bits (465), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 83/110 (75%), Positives = 101/110 (91%), Gaps = 1/110 (0%)
Query: 1 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
MSCNGCRVLRKGCSE CILR C+QWI+T +AQG+AT+F+AKFFGR+ L+SFI+AVP QR
Sbjct: 1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60
Query: 61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRP 110
PALFQSLL+EACGRTVNPV+GA+G+L +GNW++C+AAVETVL GG+L RP
Sbjct: 61 PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSL-RP 109
>sp|Q9M886|LBD41_ARATH LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41
PE=2 SV=1
Length = 263
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 114/186 (61%), Gaps = 7/186 (3%)
Query: 1 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
MSCNGCRVLRKGCSE C +R CL WI +PEAQ NAT+FLAKF+GR+ L++ I A P H R
Sbjct: 3 MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62
Query: 61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRT 120
P +F+SLL EACGR VNP+ G+VGLL SGNW +C+ AVE V+ G ++ A A T
Sbjct: 63 PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEP-VKEIATDAATIGQ 121
Query: 121 GPKPNNFD-----KDEGSPPAQSNPSSDGVMTGKRG-RGRSPAMSFYSDTTDFQSSKRGG 174
GP +D KD+ S A + + + +R R + A+ S+ ++S
Sbjct: 122 GPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTRRAKRVSTVAIQAESEGKSDEASHDSS 181
Query: 175 DHHQDK 180
HQ +
Sbjct: 182 LSHQSE 187
>sp|Q9ZW96|LBD40_ARATH LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40
PE=2 SV=1
Length = 233
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 94/126 (74%), Gaps = 1/126 (0%)
Query: 1 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
MSCNGCRVLRKGCSE C +R CLQWI + E+Q NAT+FLAKF+GR+ L++ + P H R
Sbjct: 3 MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62
Query: 61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRT 120
PA+F+SLL+EACGR VNP+ G+VGLL SGNWH+C+AAVE V+ G + P A A T
Sbjct: 63 PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSP-VTPIACDAAVTGQ 121
Query: 121 GPKPNN 126
P NN
Sbjct: 122 APPFNN 127
>sp|Q9CA30|LBD42_ARATH LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42
PE=2 SV=1
Length = 233
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/119 (58%), Positives = 93/119 (78%)
Query: 1 MSCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
+SCNGCRVLRKGC++ C +R CLQWI + ++Q NATLFLAKF+GR+ LL+ I + P H R
Sbjct: 3 ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLR 62
Query: 61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTR 119
PA+F+SLL+EACGR VNPVDG+VGL+ SGNW C+AAV+ VL+G + P+A+ +
Sbjct: 63 PAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASASH 121
>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10
PE=2 SV=1
Length = 311
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C++LR+ C++ C+ P +F+ + FG S++ + +P QR
Sbjct: 6 CAACKLLRRKCTQECVFAPYF-----PPTNPQKFIFVHRVFGASNVTKILNDLPPDQRED 60
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATT 117
SL +EA R +P+ G VGL+S ++ + + + + L+ P A
Sbjct: 61 TVNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDAVI 115
>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12
PE=2 SV=2
Length = 193
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C++LR+ C++ CI P + + K FG S++ + +P HQR
Sbjct: 9 CASCKLLRRRCAKDCIFAPYF-----PPDDPHKFAIVHKVFGASNVSKMLQELPVHQRAD 63
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRTGP 122
SL+FEA R +PV G VG +S V + ++ ++ ++ T ++
Sbjct: 64 AVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHH 123
Query: 123 KPNNFDKDEGS 133
+ D+D +
Sbjct: 124 QVLELDQDHKA 134
>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36
PE=2 SV=1
Length = 313
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C+ LR+ C++ C+ P Q F+ K FG S++ + + +QR
Sbjct: 8 CAACKFLRRKCTQECVFAPYF-----PPDQPQKFAFVHKVFGASNVAKLLNELASNQRED 62
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLS 87
SL +EA R +PV G VGL+S
Sbjct: 63 AVNSLFYEAEARLRDPVYGCVGLIS 87
>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4
PE=2 SV=1
Length = 172
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C++LR+ C++ C+ D P+ N + + FG S++ + +P HQR
Sbjct: 14 CAACKLLRRRCAQDCVFSPYFP-ADEPQKFAN----VHRVFGASNVNKMLQELPIHQRGD 68
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLSS 88
S+++EA R +PV G VG +SS
Sbjct: 69 AVSSMVYEANARVRDPVYGCVGAISS 94
>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1
PE=2 SV=1
Length = 190
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C++LR+ C+E C+L P + FG S+++ F+ +P+ QR
Sbjct: 34 CAACKILRRRCAERCVLAPYF-----PPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 88
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVE 99
S+++EA R +PV G G + +H+ R E
Sbjct: 89 AVNSMVYEAEARIRDPVYGCAGAI----YHLQRQVSE 121
>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11
PE=2 SV=2
Length = 232
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C++LR+ C++ C+L P + FG S+++ F+ +P+ QR
Sbjct: 56 CAACKILRRRCADKCVLAPYF-----PPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 110
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVE 99
S+++EA R +PV G G + +H+ R E
Sbjct: 111 AVNSMVYEAGARMRDPVYGCAGAI----YHLQRQVSE 143
>sp|Q9LRW1|LBD22_ARATH LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22
PE=2 SV=1
Length = 268
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 2 SCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRP 61
+C C+ R+ C+ C+L P + L K FG S++ I ++ ++
Sbjct: 36 ACAACKYQRRKCAPDCLLAPYF-----PHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKD 90
Query: 62 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHV--CRAAVETVLSGGTLIRPTA 112
A +++F++ R +PVDG G++ + + R +E VL + R A
Sbjct: 91 AAMHTIMFQSDARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFRDRA 143
>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25
PE=2 SV=3
Length = 159
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C+ LR+ C+ C+ P + + + FG S++ + V HQR
Sbjct: 40 CAACKFLRRKCTSDCVFAPYF-----PPEEPTKFANVHRIFGASNVSKILHEVAPHQRED 94
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIR 109
SL +EA R +PV G VG +S V R E + L+R
Sbjct: 95 AVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMR 141
>sp|Q9SRL8|LBD21_ARATH LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21
PE=2 SV=1
Length = 165
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 2 SCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKF---FGRSDLLSFIAAVPQH 58
SC C++L++ C+ TCI P + + + AK FG S++ + VP+
Sbjct: 11 SCAACKLLKRRCTPTCIF--------APYFRSSDLITFAKVHKVFGASNVSKLLGEVPEE 62
Query: 59 QRPALFQSLLFEACGRTVNPVDGAVGLLSS 88
QR SL +EA R +PV G +G ++S
Sbjct: 63 QRQETVNSLAYEAEVRLKDPVYGCIGAIAS 92
>sp|Q9SA51|LBD3_ARATH LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3
PE=2 SV=1
Length = 165
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C GC++LR+ C + SC+ P + + K FG S++ + + ++ R
Sbjct: 15 CAGCKLLRRKC----VKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSD 70
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRTGP 122
S+++EA R +PV G VG +SS + + + + LI T R
Sbjct: 71 AVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIH----IRTLHRIHT 126
Query: 123 KPNNFDKDEGSPPAQSNPSSDGVMTGKRGRGRSPAMSFYSDTTDF 167
KP + + P+ + SD M A+++ D DF
Sbjct: 127 KPPPYTASTVTFPSNKDFYSDIDM----------AVAYTDDAGDF 161
>sp|Q9SJW5|LBD14_ARATH LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14
PE=2 SV=1
Length = 188
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C GC+ LR+ C E C+ + E N + K FG S+ I+ +P H R
Sbjct: 8 CGGCKFLRRKCVEGCVFAP---YFCYEEGSSNFAA-IHKVFGASNFSKLISHLPDHDRCD 63
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVL 102
+++ +EA R +P+ G V + S V + VL
Sbjct: 64 AVRTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVL 103
>sp|Q9LHS8|LBD33_ARATH LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33
PE=2 SV=1
Length = 177
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 9/153 (5%)
Query: 2 SCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRP 61
SC C+ LR+ C+ C+ + E + + K FG S++ + +PQHQR
Sbjct: 7 SCGACKFLRRKCNRDCVFSPYFSY----EQASSHFAAVHKVFGASNVSKHLLHLPQHQRN 62
Query: 62 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRTG 121
++ +EA R +PV G V + + + V E G + + + + G
Sbjct: 63 IAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQM----KNFSYSNQNG 118
Query: 122 PKPNNF-DKDEGSPPAQSNPSSDGVMTGKRGRG 153
+ NN + A +N + V+ GR
Sbjct: 119 SQLNNIPEFVNQMTMATTNFVDESVLNNADGRN 151
>sp|Q9AT61|LBD13_ARATH LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13
PE=2 SV=2
Length = 268
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C++LR+ C+E C + E A + K FG S++ + V + QR
Sbjct: 53 CAACKLLRRRCAEECPFSP---YFSPHEPHKFAAVH--KVFGASNVSKMLLEVGESQRGD 107
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLIRPTAPAATTTRTGP 122
SL++EA R +P+ G +G +S+ H+ E ++R ATT +
Sbjct: 108 AANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTITS-- 165
Query: 123 KPNNFD 128
NNF+
Sbjct: 166 LQNNFN 171
>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB
PE=2 SV=1
Length = 186
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C+ LR+ C CI P + + + K FG S++ + + HQR
Sbjct: 12 CAACKFLRRKCMPGCIFAPYF-----PPEEPHKFANVHKIFGASNVTKLLNELLPHQRED 66
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVE 99
SL +EA R +PV G VG +S V R E
Sbjct: 67 AVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKE 103
>sp|O81323|LBD30_ARATH LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30
PE=2 SV=1
Length = 228
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 5 GCRVLRKGCSETCILRSCLQWIDTPEAQGNATLF-LAKFFGRSDLLSFIAAVPQHQRPAL 63
C+ LR+ C CI + D+ QG A + K FG S++ + VP+H+RP
Sbjct: 20 ACKFLRRKCVAGCIFAP---YFDS--EQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDA 74
Query: 64 FQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVE 99
S+ FEA R +P+ G V + S V E
Sbjct: 75 VVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTE 110
>sp|Q8L5T5|LBD15_ARATH LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15
PE=2 SV=2
Length = 224
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C++LR+ C++ C + E A++ K FG S++ + VP+ QR
Sbjct: 46 CAACKLLRRRCAQECPFSP---YFSPHEPHKFASVH--KVFGASNVSKMLMEVPESQRAD 100
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLS 87
SL++EA R +PV G +G +S
Sbjct: 101 AANSLVYEANVRLRDPVYGCMGAIS 125
>sp|Q9SSM9|LBD7_ARATH LOB domain-containing protein 7 OS=Arabidopsis thaliana GN=LBD7
PE=2 SV=1
Length = 214
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 2 SCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRP 61
+C C+ RK C + CIL P+ N L K FG S++ + + + QR
Sbjct: 13 ACAACKHQRKKCKKNCILARYF-----PQDGTNKFLNAHKLFGVSNITKMLKRIEESQRD 67
Query: 62 ALFQSLLFEACGRTVNPVDGA 82
++L++ A R ++PV G
Sbjct: 68 IAMENLIYHANARALDPVGGV 88
>sp|Q9LNB9|LBD2_ARATH LOB domain-containing protein 2 OS=Arabidopsis thaliana GN=LBD2
PE=2 SV=2
Length = 206
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 2 SCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRP 61
+C C+ RK C+ CIL T E Q + K FG S++ + V + R
Sbjct: 24 ACASCKHQRKKCNNECILSPYFPARKTKEFQA-----VHKVFGVSNVQKMVRTVREEDRT 78
Query: 62 ALFQSLLFEACGRTVNPVDGAVG 84
L SL +EA R +PV G+ G
Sbjct: 79 KLSDSLTWEALWRQKDPVLGSYG 101
>sp|O81322|LBD31_ARATH LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31
PE=2 SV=2
Length = 220
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 9/106 (8%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C+ LR+ C C+ + D+ E + T + K FG S+ + +P +R
Sbjct: 12 CGACKFLRRKCVADCVFAP---YFDSVEGTSHFTA-VHKVFGASNASKLLMMIPASRRLD 67
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCR-----AAVETVLS 103
+L +EA R +PV G VG + + V A V+T LS
Sbjct: 68 AVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLS 113
>sp|O04479|LBD6_ARATH LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6
PE=1 SV=1
Length = 199
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C+ LR+ C C+ D P+ N + K FG S++ + + QR
Sbjct: 10 CAACKFLRRKCQPECVFAPYFPP-DQPQKFAN----VHKVFGASNVTKLLNELHPSQRED 64
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLS 87
SL +EA R +PV G VG++S
Sbjct: 65 AVNSLAYEADMRLRDPVYGCVGVIS 89
>sp|Q9SLB7|LBD16_ARATH LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16
PE=2 SV=1
Length = 245
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLF-LAKFFGRSDLLSFIAAVPQHQRP 61
C C+ LR+ C+ CI QG A + K FG S++ + VP H R
Sbjct: 16 CGACKFLRRKCASDCIFAPYFS-----SEQGAARFAAIHKVFGASNVSKLLLNVPIHDRC 70
Query: 62 ALFQSLLFEACGRTVNPVDGAVGLL 86
++ +EA R +PV G V +
Sbjct: 71 EAVVTIAYEAQARLHDPVYGCVSHI 95
>sp|O22132|LBD19_ARATH LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19
PE=2 SV=1
Length = 191
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 5 GCRVLRKGCSETCILRSCLQWIDTPEAQGNATLF-LAKFFGRSDLLSFIAAVPQHQRPAL 63
C+ LR+ C + C+ + D QG A + K FG S+ + +P H+R
Sbjct: 19 ACKFLRRKCVKGCVFAP---YFDA--EQGTARFAAVHKVFGASNASKMLLRLPLHKRLDA 73
Query: 64 FQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVE 99
+L +EA R +PV G+VG L S V E
Sbjct: 74 VVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAE 109
>sp|A1YKY7|IAL1_MAIZE Protein IAL1 OS=Zea mays PE=2 SV=1
Length = 269
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C+ LR+ C C+ D P+ + + + FG S++ + + QR
Sbjct: 34 CAACKFLRRKCQPDCVFAPYFPP-DNPQK----FVRVHRVFGASNVTKLMNEIHPLQRED 88
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLS 87
SL +EA R +PV G VG++S
Sbjct: 89 AMNSLAYEADMRIRDPVYGCVGVIS 113
>sp|Q9SCS4|LBD28_ARATH LOB domain-containing protein 28 OS=Arabidopsis thaliana GN=LBD28
PE=2 SV=1
Length = 198
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C+ LR+ C+E C+ P + + + K FG S + + I ++ QR
Sbjct: 13 CAACKHLRRKCTEDCVFAPYF-----PSTKLDNYEAVHKVFGASHVATLINSLHPCQREF 67
Query: 63 LFQSLLFEACGRTVNPVDGAVGLL 86
+L +EA + +PV+G +G++
Sbjct: 68 AMDTLAWEAQVQANDPVNGCLGII 91
>sp|Q32SG3|LBD6_MAIZE LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1
Length = 260
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C+ LR+ C C+ D P+ + + + FG S++ + + QR
Sbjct: 34 CAACKFLRRKCQPDCVFAPYFPP-DNPQK----FVHVHRVFGASNVTKLLNELHPFQRED 88
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLS 87
SL +EA R +PV G VG++S
Sbjct: 89 AVNSLAYEADMRLRDPVYGCVGVIS 113
>sp|P59468|LBD24_ARATH LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24
PE=2 SV=1
Length = 121
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C+ LR+ C + C+ + + Q A + + +G ++ + +P R
Sbjct: 6 CAACKYLRRRCPKDCVFSP---YFPPNDPQKFACVH--RIYGAGNVSKMLQQLPDQTRAE 60
Query: 63 LFQSLLFEACGRTVNPVDGAVGLL 86
+SL FEA R +PV G VG++
Sbjct: 61 AVESLCFEAKCRVDDPVYGCVGII 84
>sp|P59467|LBD23_ARATH LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23
PE=2 SV=1
Length = 121
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C+ LR+ C + C+ + + Q A + + +G ++ + +P R
Sbjct: 6 CAACKYLRRRCPKDCVFSP---YFPPNDPQKFACVH--RIYGAGNVSKMLQQLPDQTRAE 60
Query: 63 LFQSLLFEACGRTVNPVDGAVGLL 86
+SL FEA R +PV G VG++
Sbjct: 61 AVESLCFEAKCRVDDPVYGCVGII 84
>sp|Q9STS6|LBD27_ARATH LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27
PE=2 SV=1
Length = 328
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 2 SCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRP 61
+C C+ R+ C+ C L P Q + + FG ++ + + + Q+P
Sbjct: 36 ACAACKYQRRRCAADCPLAPYF-----PAEQPKLFQNVHRLFGVRSIVKILEKLDETQKP 90
Query: 62 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVE 99
+S++F++ R +PV G +G+ + + A E
Sbjct: 91 EAMKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWFAEEE 128
>sp|O22131|LBD18_ARATH LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18
PE=2 SV=2
Length = 262
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 5 GCRVLRKGCSETCILRSCLQWIDTPEAQGNATLF-LAKFFGRSDLLSFIAAVPQHQRPAL 63
C+ LR+ C CI + D+ QG+A + K FG S++ + +P H+R
Sbjct: 40 ACKFLRRKCVPGCIFAP---YFDS--EQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDA 94
Query: 64 FQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVET 100
++ +EA R +P+ G V + + V E
Sbjct: 95 VVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEV 131
>sp|Q8LQH4|LBD6_ORYSJ LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica
GN=LBD6 PE=2 SV=1
Length = 269
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C+ LR+ C C+ D P+ + + + FG S++ + + +QR
Sbjct: 39 CAACKFLRRKCQPDCVFAPYFPP-DNPQK----FVHVHRVFGASNVTKLLNELHPYQRED 93
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLS 87
SL +EA R +PV G V ++S
Sbjct: 94 AVNSLAYEADMRLRDPVYGCVAIIS 118
>sp|A2WXT0|LBD6_ORYSI LOB domain-containing protein 6 OS=Oryza sativa subsp. indica
GN=LBD6 PE=3 SV=1
Length = 269
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPA 62
C C+ LR+ C C+ D P+ + + + FG S++ + + +QR
Sbjct: 39 CAACKFLRRKCQPDCVFAPYFPP-DNPQK----FVHVHRVFGASNVTKLLNELHPYQRED 93
Query: 63 LFQSLLFEACGRTVNPVDGAVGLLS 87
SL +EA R +PV G V ++S
Sbjct: 94 AVNSLAYEADMRLRDPVYGCVAIIS 118
>sp|Q9SRV3|LBD20_ARATH LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20
PE=2 SV=1
Length = 273
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLF-LAKFFGRSDLLSFIAAVPQHQRP 61
C C+ LR+ C CI QG A + K FG S++ + +P ++R
Sbjct: 52 CGACKFLRRKCVSGCIFAPHF-----GSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRH 106
Query: 62 ALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVLSGGTLI 108
++ +EA R +PV G V + + V E + LI
Sbjct: 107 DAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQLI 153
>sp|Q9FFL3|LBD35_ARATH LOB domain-containing protein 35 OS=Arabidopsis thaliana GN=LBD35
PE=2 SV=1
Length = 206
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 3 CNGCRVLRKGCSETCIL--RSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60
C+ C+V++ C+ CI L ++T E L + FG ++ +A + QR
Sbjct: 6 CSACKVMKCDCAPNCIFAPHFPLTNLETFER-------LHRIFGAGNVFKILANLDPIQR 58
Query: 61 PALFQSLLFEACGRTVNPVDGAVGLLS 87
+L +EA +P+ G VG+ +
Sbjct: 59 ETAVNALCYEAEALERDPIFGCVGIFN 85
>sp|Q9M2J7|LBD29_ARATH LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29
PE=2 SV=1
Length = 218
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 18/139 (12%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLA--KFFGRSDLLSFIAAVPQHQR 60
C C+ LR+ C++ C+ QG A+ F A K FG S+ ++ +P R
Sbjct: 12 CGACKFLRRKCAKGCVFAPYF-----CHEQG-ASHFAAIHKVFGASNASKLLSHLPISDR 65
Query: 61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVCRAAVETVL----SGGTLIRPTAPAAT 116
++ +EA R +P+ G V + + V E + + ++I +P
Sbjct: 66 CEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSP--- 122
Query: 117 TTRTGPKPNNFDKDEGSPP 135
T PN++ D P
Sbjct: 123 ---TSENPNSYYGDTTKAP 138
>sp|Q9C8V8|LBD5_ARATH LOB domain-containing protein 5 OS=Arabidopsis thaliana GN=LBD5
PE=2 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 41 KFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDGAVGLLSSGNWHV 93
+ FG ++++ + P+ ++ L S++ E T +P+ G G++ W +
Sbjct: 43 ELFGTPNIITMMQHAPEEKKQMLATSIIMEGNAWTEDPISGGFGMIQKLMWKI 95
>sp|Q9SLB6|LBD17_ARATH LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17
PE=2 SV=1
Length = 244
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 3 CNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLA--KFFGRSDLLSFIAAVPQHQR 60
C C+ LR+ C + C+ QG A+ F A + FG S+ ++ +P R
Sbjct: 8 CGACKFLRRRCVKGCVFAPYF-----CHEQG-ASHFAAIHQVFGASNASKLLSHLPMEDR 61
Query: 61 PALFQSLLFEACGRTVNPVDGAVGLLSSGNWHV 93
++ +EA R +P+ G V + S V
Sbjct: 62 REAATTIYYEAQARRQDPIYGCVSHIFSLQQQV 94
>sp|Q9V460|SPT5H_DROME Transcription elongation factor SPT5 OS=Drosophila melanogaster
GN=Spt5 PE=1 SV=1
Length = 1078
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 111 TAPAATTTRTGPKPNNFDKDEGSPPAQSNPSSDGVMTGKRGRGRSPAMSFYSDTTDFQSS 170
TA + T G + N+D D +P PS DG MT + G A + + DF S
Sbjct: 819 TAAGSKTPLVGSQTPNWDTDTRTPYGTMTPSHDGSMTPRHGAWDPTANTTPARNNDFDYS 878
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 109 RPTAPAATTTRTGPKPNNFDKDE-------GSPPAQSNPSSDG 144
RP AP + N D+DE G PPAQ+NP G
Sbjct: 415 RPNAPVFIPPPAQNRAGNVDQDEQDFGAAVGVPPAQANPDDQG 457
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,730,248
Number of Sequences: 539616
Number of extensions: 3077786
Number of successful extensions: 8538
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 8460
Number of HSP's gapped (non-prelim): 65
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)