Query 029809
Match_columns 187
No_of_seqs 135 out of 273
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:00:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 2.8E-46 6.1E-51 285.7 9.0 101 2-107 1-101 (101)
2 PF11333 DUF3135: Protein of u 37.5 53 0.0012 24.6 3.7 60 29-94 15-76 (83)
3 PF04706 Dickkopf_N: Dickkopf 25.8 33 0.00071 23.8 0.8 15 2-16 22-36 (52)
4 PF15300 INT_SG_DDX_CT_C: INTS 25.3 50 0.0011 24.0 1.7 27 46-72 23-51 (65)
5 PF03242 LEA_3: Late embryogen 21.3 39 0.00084 26.0 0.5 20 68-87 58-77 (93)
6 PF00172 Zn_clus: Fungal Zn(2) 17.0 56 0.0012 20.6 0.4 14 2-15 2-15 (40)
7 PRK00451 glycine dehydrogenase 16.1 91 0.002 28.1 1.7 34 21-60 3-36 (447)
8 PF08158 NUC130_3NT: NUC130/3N 14.7 1.2E+02 0.0027 20.8 1.7 23 47-69 19-45 (52)
9 PF14653 IGFL: Insulin growth 14.4 86 0.0019 24.2 1.0 15 10-24 42-56 (89)
10 KOG3641 Zinc carboxypeptidase 14.2 1.1E+02 0.0023 31.1 1.8 61 17-82 189-249 (650)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=2.8e-46 Score=285.68 Aligned_cols=101 Identities=31% Similarity=0.571 Sum_probs=95.9
Q ss_pred CccchhhcccCCCCCCccccccCCCCCchhhhhhhHHHHhhhchhcHHHHHhhCCCCChHHHHHHHHHhhccCCCCCCCC
Q 029809 2 SCNGCRVLRKGCSETCILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDG 81 (187)
Q Consensus 2 ~CAACK~lRRrC~~~CilAPyf~~Fpa~~~q~fa~~~vhKvFG~sNv~kmL~~lp~~~R~~a~~SL~YEA~~R~~DPVyG 81 (187)
+|||||||||+|+++|+|||| ||++++++|.+ ||||||++||+|||+++|+++|+++|+||+|||++|.+|||||
T Consensus 1 ~CaaCk~lRr~C~~~C~laPy---FP~~~~~~F~~--vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~G 75 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPY---FPADQPQRFAN--VHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYG 75 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCC---CChhHHHHHHH--HHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcc
Confidence 799999999999999999999 79999999985 9999999999999999999999999999999999999999999
Q ss_pred cHHHHHhHHHHHHHHHHHHHHccCcc
Q 029809 82 AVGLLSSGNWHVCRAAVETVLSGGTL 107 (187)
Q Consensus 82 cvG~I~~Lq~qi~qaave~VL~g~~i 107 (187)
|+|+||.|+|||++++.|.++.+..|
T Consensus 76 c~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 76 CVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999888887766543
No 2
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=37.52 E-value=53 Score=24.61 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=44.2
Q ss_pred chhhhhhhHHHHhhhchhcHHHHHhhCCCCC--hHHHHHHHHHhhccCCCCCCCCcHHHHHhHHHHHH
Q 029809 29 PEAQGNATLFLAKFFGRSDLLSFIAAVPQHQ--RPALFQSLLFEACGRTVNPVDGAVGLLSSGNWHVC 94 (187)
Q Consensus 29 ~~~q~fa~~~vhKvFG~sNv~kmL~~lp~~~--R~~a~~SL~YEA~~R~~DPVyGcvG~I~~Lq~qi~ 94 (187)
++|++|.. +-..-+-.+|...|++. |-.++++=|==--.|.+||+.-|+-+..-+..++.
T Consensus 15 ~dPe~fe~------lr~~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~ 76 (83)
T PF11333_consen 15 NDPEAFEQ------LRQELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFY 76 (83)
T ss_pred hCHHHHHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 46777875 22345677999999865 45556666666667899999999988888888874
No 3
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=25.81 E-value=33 Score=23.77 Aligned_cols=15 Identities=40% Similarity=0.879 Sum_probs=13.4
Q ss_pred CccchhhcccCCCCC
Q 029809 2 SCNGCRVLRKGCSET 16 (187)
Q Consensus 2 ~CAACK~lRRrC~~~ 16 (187)
.|..||-+|++|..|
T Consensus 22 ~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 22 KCLPCRKRRKRCTRD 36 (52)
T ss_pred cChhhccCCCCCCCC
Confidence 489999999999976
No 4
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=25.32 E-value=50 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=23.3
Q ss_pred hcHHHHHhhC--CCCChHHHHHHHHHhhc
Q 029809 46 SDLLSFIAAV--PQHQRPALFQSLLFEAC 72 (187)
Q Consensus 46 sNv~kmL~~l--p~~~R~~a~~SL~YEA~ 72 (187)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3688899987 67899999999999995
No 5
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=21.28 E-value=39 Score=25.97 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=16.1
Q ss_pred HHhhccCCCCCCCCcHHHHH
Q 029809 68 LFEACGRTVNPVDGAVGLLS 87 (187)
Q Consensus 68 ~YEA~~R~~DPVyGcvG~I~ 87 (187)
-.|-..|..|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 56778999999999976544
No 6
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=17.01 E-value=56 Score=20.56 Aligned_cols=14 Identities=29% Similarity=0.878 Sum_probs=10.8
Q ss_pred CccchhhcccCCCC
Q 029809 2 SCNGCRVLRKGCSE 15 (187)
Q Consensus 2 ~CAACK~lRRrC~~ 15 (187)
+|..|+..+.+|..
T Consensus 2 aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 2 ACDRCRRRKVKCDG 15 (40)
T ss_dssp SBHHHHHHTS--ST
T ss_pred cChHHHhhCcCcCC
Confidence 69999999999987
No 7
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=16.15 E-value=91 Score=28.09 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=23.6
Q ss_pred cccCCCCCchhhhhhhHHHHhhhchhcHHHHHhhCCCCCh
Q 029809 21 SCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQR 60 (187)
Q Consensus 21 Pyf~~Fpa~~~q~fa~~~vhKvFG~sNv~kmL~~lp~~~R 60 (187)
|| +|+.+ +.-.. +-+.||.++|-.+++.+|.+.|
T Consensus 3 ~~---~~~~~-~~~~~--~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 3 PY---IPHTE-EDIRE--MLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CC---CCCCH-HHHHH--HHHHhCCCCHHHHHHhCCHHHH
Confidence 66 88864 44433 7799999999888776664433
No 8
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=14.74 E-value=1.2e+02 Score=20.85 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=18.3
Q ss_pred cHHHHHh----hCCCCChHHHHHHHHH
Q 029809 47 DLLSFIA----AVPQHQRPALFQSLLF 69 (187)
Q Consensus 47 Nv~kmL~----~lp~~~R~~a~~SL~Y 69 (187)
.+..+|+ .++++.|..+++||+-
T Consensus 19 ~L~~lL~~~~~~L~p~lR~~lv~aLiL 45 (52)
T PF08158_consen 19 ELIDLLRNHHTVLDPDLRMKLVKALIL 45 (52)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 4666675 4889999999999974
No 9
>PF14653 IGFL: Insulin growth factor-like family
Probab=14.43 E-value=86 Score=24.20 Aligned_cols=15 Identities=20% Similarity=0.893 Sum_probs=12.7
Q ss_pred ccCCCCCCccccccC
Q 029809 10 RKGCSETCILRSCLQ 24 (187)
Q Consensus 10 RRrC~~~CilAPyf~ 24 (187)
-++|..+|.|.|+|+
T Consensus 42 T~~Cg~~Ctf~pcfe 56 (89)
T PF14653_consen 42 TRKCGPNCTFWPCFE 56 (89)
T ss_pred ccccCCCCCccCccc
Confidence 368999999999974
No 10
>KOG3641 consensus Zinc carboxypeptidase [Amino acid transport and metabolism]
Probab=14.21 E-value=1.1e+02 Score=31.06 Aligned_cols=61 Identities=7% Similarity=0.096 Sum_probs=49.1
Q ss_pred CccccccCCCCCchhhhhhhHHHHhhhchhcHHHHHhhCCCCChHHHHHHHHHhhccCCCCCCCCc
Q 029809 17 CILRSCLQWIDTPEAQGNATLFLAKFFGRSDLLSFIAAVPQHQRPALFQSLLFEACGRTVNPVDGA 82 (187)
Q Consensus 17 CilAPyf~~Fpa~~~q~fa~~~vhKvFG~sNv~kmL~~lp~~~R~~a~~SL~YEA~~R~~DPVyGc 82 (187)
=.+-|++...|.+ |.+..+++=.|+.+ +|+.+.+|+-++.|+.+-.+|.-+.+-.+|-.++
T Consensus 189 ~~~~P~~~H~pi~----~k~pi~e~~~~~q~-~ki~~~l~~~~~sd~~~~vv~~ld~~~~~p~~~~ 249 (650)
T KOG3641|consen 189 QYLKPAVLHPPIY----FKAPIVESRLNSQS-SKISSCLPPAPVSDLEKAVVYDLDAHSTIPHNAE 249 (650)
T ss_pred ceeceecccCCCc----cCccceeccccccc-cchhhhcCCCChhhhhhhhcccccCCcCCCCCcc
Confidence 3455665554543 55567999999999 9999999999999999999999999999994444
Done!