Query 029809
Match_columns 187
No_of_seqs 135 out of 273
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p9x_A Hypothetical protein PH 17.0 44 0.0015 25.2 1.0 16 29-45 44-59 (99)
2 1lrv_A LRV, leucine-rich repea 16.9 45 0.0015 27.5 1.2 29 2-35 13-48 (244)
3 2jr2_A UPF0352 protein CPS_261 15.4 41 0.0014 24.3 0.5 20 48-67 41-60 (76)
4 1hdl_A HF6478, serine proteina 12.0 1.8E+02 0.006 19.6 2.9 29 72-100 22-50 (55)
5 2jrx_A UPF0352 protein YEJL; h 10.5 1.8E+02 0.0061 21.3 2.6 20 48-67 41-61 (83)
6 2csf_A DNA-binding protein SAT 10.5 1.1E+02 0.0039 23.1 1.6 17 37-53 39-57 (101)
7 2juz_A UPF0352 protein HI0840; 10.3 1.7E+02 0.0057 21.3 2.4 20 48-67 41-61 (80)
8 3coq_A Regulatory protein GAL4 8.4 1.2E+02 0.0041 20.1 1.0 16 1-16 2-17 (89)
9 3cxj_A Uncharacterized protein 8.1 1.3E+02 0.0046 24.1 1.3 29 49-77 66-94 (165)
10 2dk8_A DNA-directed RNA polyme 8.1 95 0.0033 22.2 0.4 24 48-71 35-58 (81)
No 1
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=17.00 E-value=44 Score=25.22 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=13.9
Q ss_pred chhhhhhhHHHHhhhch
Q 029809 29 PEAQGNATLFLAKFFGR 45 (187)
Q Consensus 29 ~~~q~fa~~~vhKvFG~ 45 (187)
++|++|.. .|.++||-
T Consensus 44 eDP~kFke-aV~~LFGE 59 (99)
T 2p9x_A 44 DDPQKFKE-AVSKLFGE 59 (99)
T ss_dssp HCHHHHHH-HHHHHHCH
T ss_pred cCHHHHHH-HHHHHHHH
Confidence 57899997 79999995
No 2
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=16.86 E-value=45 Score=27.51 Aligned_cols=29 Identities=14% Similarity=0.357 Sum_probs=22.9
Q ss_pred Cccchhhcc-----cCCCCC--CccccccCCCCCchhhhhh
Q 029809 2 SCNGCRVLR-----KGCSET--CILRSCLQWIDTPEAQGNA 35 (187)
Q Consensus 2 ~CAACK~lR-----RrC~~~--CilAPyf~~Fpa~~~q~fa 35 (187)
.|+.|.|.- -+|.+. |+..+| +..-.+|.
T Consensus 13 ~c~~c~~~~~~~~~~~c~~~~~c~~~~~-----~~ri~~~~ 48 (244)
T 1lrv_A 13 DCRVCSFRMSLLLTGRCTPGDACVAVES-----GRQIDRFF 48 (244)
T ss_dssp CTTTSTTTTTTGGGTSSBTTTBCSSSSC-----HHHHHHHH
T ss_pred cccCCCCcccchhcCCCCCCchHhhcCc-----HHHHHHHH
Confidence 699999998 789966 999998 55555554
No 3
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=15.39 E-value=41 Score=24.32 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=16.2
Q ss_pred HHHHHhhCCCCChHHHHHHH
Q 029809 48 LLSFIAAVPQHQRPALFQSL 67 (187)
Q Consensus 48 v~kmL~~lp~~~R~~a~~SL 67 (187)
++++|+++++.||..++++.
T Consensus 41 vTnlln~V~~~qR~~iAe~F 60 (76)
T 2jr2_A 41 VTNIIAQVPESKRVAVVDNF 60 (76)
T ss_dssp HHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 56778899999999887764
No 4
>1hdl_A HF6478, serine proteinase inhibitor lekti; putative serine proteinase inhibitor; NMR {Homo sapiens} SCOP: g.68.1.2 PDB: 1uuc_A
Probab=12.04 E-value=1.8e+02 Score=19.63 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=24.5
Q ss_pred ccCCCCCCCCcHHHHHhHHHHHHHHHHHH
Q 029809 72 CGRTVNPVDGAVGLLSSGNWHVCRAAVET 100 (187)
Q Consensus 72 ~~R~~DPVyGcvG~I~~Lq~qi~qaave~ 100 (187)
+-|.-|||-|.=|++..=.--+|++.+|.
T Consensus 22 Ctre~~Pvcg~DGkty~NkC~~Ck~~le~ 50 (55)
T 1hdl_A 22 CPQDKKFFQSLDGIMFINKCATCKMILEK 50 (55)
T ss_dssp CCSCGGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcccCCCCCEeccHhHHHHHHHHh
Confidence 56888999999999998888899876653
No 5
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=10.48 E-value=1.8e+02 Score=21.28 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=15.1
Q ss_pred HHHHHh-hCCCCChHHHHHHH
Q 029809 48 LLSFIA-AVPQHQRPALFQSL 67 (187)
Q Consensus 48 v~kmL~-~lp~~~R~~a~~SL 67 (187)
++++|+ .+++.||..++++.
T Consensus 41 vTNlln~~V~~~qR~~iAe~F 61 (83)
T 2jrx_A 41 VTNLINTSIAPAQRQAIANSF 61 (83)
T ss_dssp HHHHHHHHSCTTSHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHH
Confidence 455665 69999999887764
No 6
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=10.47 E-value=1.1e+02 Score=23.06 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=13.9
Q ss_pred HHHHhhhch--hcHHHHHh
Q 029809 37 LFLAKFFGR--SDLLSFIA 53 (187)
Q Consensus 37 ~~vhKvFG~--sNv~kmL~ 53 (187)
+|+.+|+++ ..+..||+
T Consensus 39 ~FAk~vlnRsQGtLSelLR 57 (101)
T 2csf_A 39 LFAKVAANKSQGWLCELLR 57 (101)
T ss_dssp HHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHhchhHHHHHHh
Confidence 568999999 67888887
No 7
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=10.26 E-value=1.7e+02 Score=21.30 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=15.2
Q ss_pred HHHHHh-hCCCCChHHHHHHH
Q 029809 48 LLSFIA-AVPQHQRPALFQSL 67 (187)
Q Consensus 48 v~kmL~-~lp~~~R~~a~~SL 67 (187)
++++|+ .+++.||..++++.
T Consensus 41 vTnlln~~V~~~qR~~iAe~F 61 (80)
T 2juz_A 41 ASNLLTTSVPQTQCEALAQAF 61 (80)
T ss_dssp HHHHHTTSSCSTTHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHH
Confidence 456665 69999999887764
No 8
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=8.38 E-value=1.2e+02 Score=20.12 Aligned_cols=16 Identities=31% Similarity=0.823 Sum_probs=13.2
Q ss_pred CCccchhhcccCCCCC
Q 029809 1 MSCNGCRVLRKGCSET 16 (187)
Q Consensus 1 ~~CAACK~lRRrC~~~ 16 (187)
.+|..||..+-+|...
T Consensus 2 ~aC~~Cr~rK~kCd~~ 17 (89)
T 3coq_A 2 QACDICRLKKLKCSKE 17 (89)
T ss_dssp CCCHHHHHHTCCCCCC
T ss_pred ccchhhhccCCCCCCc
Confidence 3799999999999764
No 9
>3cxj_A Uncharacterized protein; PSI-II, structural genomics structure initiative; 2.80A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=8.07 E-value=1.3e+02 Score=24.14 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=24.8
Q ss_pred HHHHhhCCCCChHHHHHHHHHhhccCCCC
Q 029809 49 LSFIAAVPQHQRPALFQSLLFEACGRTVN 77 (187)
Q Consensus 49 ~kmL~~lp~~~R~~a~~SL~YEA~~R~~D 77 (187)
.+.|.++++++|...+.+|.|+....-.|
T Consensus 66 ~~~L~~l~~~eR~~fl~~i~~~Ll~~~vd 94 (165)
T 3cxj_A 66 QAGIRALSMEKRTEFIWKVRFTLNRFGVD 94 (165)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTTTTCE
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCe
Confidence 46789999999999999999999876543
No 10
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=8.05 E-value=95 Score=22.21 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHHHHhhCCCCChHHHHHHHHHhh
Q 029809 48 LLSFIAAVPQHQRPALFQSLLFEA 71 (187)
Q Consensus 48 v~kmL~~lp~~~R~~a~~SL~YEA 71 (187)
+.+++-.+++++|..+++.|+-+-
T Consensus 35 L~~~~p~~~~~~r~~aIN~LL~~g 58 (81)
T 2dk8_A 35 IQNEMPHIEAQQRAVAINRLLSMG 58 (81)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHcC
Confidence 455555666677888888877653
Done!