Your job contains 1 sequence.
>029810
MVFRSRSRSRGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRIS
RGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSSRDIGR
GDRGRYRSGRDDYGYRRSPRRSPYRGGRDYSPRHSPPYGGRSRRERSRSVPRSPYGSPER
KYARGSR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029810
(187 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025092 - symbol:SR45a "serine/arginine rich-l... 270 1.8e-23 1
ASPGD|ASPL0000005578 - symbol:AN6676 species:162425 "Emer... 169 2.1e-12 1
DICTYBASE|DDB_G0292698 - symbol:DDB_G0292698 "RNA-binding... 159 2.8e-11 1
UNIPROTKB|Q9DDU8 - symbol:TRA2B "Uncharacterized protein"... 147 5.2e-10 1
POMBASE|SPAC25G10.01 - symbol:SPAC25G10.01 "RNA-binding p... 146 7.4e-10 1
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"... 141 8.4e-10 1
UNIPROTKB|Q3ZBT6 - symbol:TRA2B "Transformer-2 protein ho... 144 1.1e-09 1
UNIPROTKB|E2RD37 - symbol:TRA2B "Uncharacterized protein"... 144 1.1e-09 1
UNIPROTKB|P62995 - symbol:TRA2B "Transformer-2 protein ho... 144 1.1e-09 1
MGI|MGI:106016 - symbol:Tra2b "transformer 2 beta homolog... 144 1.1e-09 1
RGD|619886 - symbol:Tra2b "transformer 2 beta homolog (Dr... 144 1.1e-09 1
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a... 143 1.6e-09 1
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si... 138 1.8e-09 1
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho... 138 1.8e-09 1
UNIPROTKB|F1NPM7 - symbol:TRA2A "Uncharacterized protein"... 141 2.2e-09 1
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"... 138 4.7e-09 1
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"... 138 4.8e-09 1
UNIPROTKB|I3LBN9 - symbol:TRA2B "Uncharacterized protein"... 138 4.8e-09 1
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo... 138 4.9e-09 1
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol... 138 4.9e-09 1
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho... 138 4.9e-09 1
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (... 138 4.9e-09 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 133 5.9e-09 1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 132 7.6e-09 1
ZFIN|ZDB-GENE-030131-579 - symbol:rbmx "RNA binding motif... 139 7.8e-09 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 131 9.7e-09 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 131 9.7e-09 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 131 9.7e-09 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 131 1.0e-08 1
UNIPROTKB|E1BDE7 - symbol:SAFB2 "Uncharacterized protein"... 135 1.1e-08 2
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 129 1.6e-08 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 129 1.6e-08 1
UNIPROTKB|Q6IRQ4 - symbol:rbmx "RNA-binding motif protein... 136 1.6e-08 1
UNIPROTKB|A9UMT9 - symbol:LOC100135403 "LOC100135403 prot... 136 1.6e-08 1
ZFIN|ZDB-GENE-030131-698 - symbol:safb "scaffold attachme... 141 1.8e-08 1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 2.5e-08 1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 127 2.6e-08 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 127 2.6e-08 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 127 2.6e-08 1
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein... 132 2.6e-08 1
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein... 132 2.7e-08 1
UNIPROTKB|F1LVK5 - symbol:F1LVK5 "Uncharacterized protein... 130 2.7e-08 1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 130 2.8e-08 1
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ... 132 2.9e-08 1
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote... 134 2.9e-08 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 128 3.0e-08 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 126 3.3e-08 1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 3.5e-08 1
UNIPROTKB|Q29RT0 - symbol:RBMX "RNA-binding motif protein... 133 3.8e-08 1
UNIPROTKB|F1PPN1 - symbol:SAFB2 "Uncharacterized protein"... 138 4.0e-08 1
UNIPROTKB|J9JHN8 - symbol:SAFB2 "Uncharacterized protein"... 138 4.0e-08 1
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer... 136 4.6e-08 1
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ... 132 4.7e-08 1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei... 132 4.8e-08 1
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ... 132 4.8e-08 1
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l... 132 4.8e-08 1
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein... 132 4.8e-08 1
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein... 132 4.8e-08 1
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein... 132 4.8e-08 1
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein... 132 4.8e-08 1
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,... 132 4.8e-08 1
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ... 132 4.8e-08 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 124 5.3e-08 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 124 5.3e-08 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 124 5.3e-08 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 124 5.3e-08 1
RGD|1306751 - symbol:Rbmxrtl "RNA binding motif protein, ... 131 6.1e-08 1
RGD|1585845 - symbol:Rbmxl1 "RNA binding motif protein, X... 131 6.1e-08 1
UNIPROTKB|K7GKR9 - symbol:RBMX "Uncharacterized protein" ... 123 6.8e-08 1
TAIR|locus:2179624 - symbol:AT5G19030 species:3702 "Arabi... 123 6.8e-08 1
UNIPROTKB|G3X6B1 - symbol:LOC787645 "Uncharacterized prot... 134 7.2e-08 1
UNIPROTKB|F1SBU9 - symbol:SAFB2 "Uncharacterized protein"... 135 8.4e-08 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 122 8.7e-08 1
MGI|MGI:2146808 - symbol:Safb2 "scaffold attachment facto... 135 8.8e-08 1
UNIPROTKB|H9KZ12 - symbol:H9KZ12 "Uncharacterized protein... 134 9.7e-08 1
UNIPROTKB|O75526 - symbol:RBMXL2 "RNA-binding motif prote... 129 1.0e-07 1
UNIPROTKB|H9L022 - symbol:SAFB2 "Uncharacterized protein"... 133 1.0e-07 1
ZFIN|ZDB-GENE-040426-1094 - symbol:tra2b "transformer 2 b... 126 1.1e-07 1
UNIPROTKB|Q14151 - symbol:SAFB2 "Scaffold attachment fact... 134 1.1e-07 1
UNIPROTKB|K7GMF5 - symbol:RBMX "Uncharacterized protein" ... 121 1.1e-07 1
UNIPROTKB|F5GZU3 - symbol:SAFB "Scaffold attachment facto... 132 1.3e-07 1
UNIPROTKB|B7Z2F6 - symbol:SAFB "cDNA FLJ54744, highly sim... 132 1.3e-07 1
UNIPROTKB|H3BR27 - symbol:RBMX "RNA-binding motif protein... 120 1.4e-07 1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi... 120 1.4e-07 1
UNIPROTKB|K7GQ39 - symbol:RBMX "Uncharacterized protein" ... 120 1.4e-07 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 120 1.4e-07 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 120 1.4e-07 1
FB|FBgn0039229 - symbol:Saf-B "Scaffold attachment factor... 133 1.4e-07 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 125 1.5e-07 1
UNIPROTKB|E1B9I2 - symbol:SAFB "Uncharacterized protein" ... 132 1.6e-07 1
UNIPROTKB|Q15424 - symbol:SAFB "Scaffold attachment facto... 132 1.7e-07 1
WARNING: Descriptions of 742 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2025092 [details] [associations]
symbol:SR45a "serine/arginine rich-like protein 45a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0009644 "response to high light
intensity" evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009644
GO:GO:0030529 GO:GO:0043484 eggNOG:COG0724 HSSP:Q14103
EMBL:BT005797 IPI:IPI00529615 RefSeq:NP_563787.2 UniGene:At.24511
ProteinModelPortal:Q84TH4 SMR:Q84TH4 STRING:Q84TH4
EnsemblPlants:AT1G07350.1 GeneID:837246 KEGG:ath:AT1G07350
TAIR:At1g07350 HOGENOM:HOG000239942 InParanoid:Q84TH4 OMA:SYSPYYR
ProtClustDB:CLSN2918464 ArrayExpress:Q84TH4 Genevestigator:Q84TH4
Uniprot:Q84TH4
Length = 382
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 55/101 (54%), Positives = 67/101 (66%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
++ NPGN+LYVTGLS RVTERDLE HF+KEGKV LV++P TR SRGF F++M V
Sbjct: 68 SDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVG 127
Query: 73 DAERCIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLGLK 113
DA RCI+ L+ SVL+GR I G YLGL+
Sbjct: 128 DANRCIRSLDHSVLQGRVITVEKARRRRGRTPTPGKYLGLR 168
>ASPGD|ASPL0000005578 [details] [associations]
symbol:AN6676 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 EMBL:AACD01000111 eggNOG:NOG297815
OMA:GIHPRLT OrthoDB:EOG4KPXM5 RefSeq:XP_664280.1
ProteinModelPortal:Q5AYF4 STRING:Q5AYF4
EnsemblFungi:CADANIAT00007461 GeneID:2870465 KEGG:ani:AN6676.2
HOGENOM:HOG000180680 Uniprot:Q5AYF4
Length = 307
Score = 169 (64.5 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 36/95 (37%), Positives = 50/95 (52%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
N G+ L+VTG+ R+TE D+ + F K G V SC ++V+P T+ SRGF FV M E A+
Sbjct: 64 NTGSNLFVTGIHPRLTESDISRLFEKYGDVESCSIMVDPHTKESRGFGFVNMVTAEQADA 123
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
+ L V+EGR + G Y G
Sbjct: 124 AKEGLQGEVIEGRTLSIEKARRSRPRTPTPGKYFG 158
>DICTYBASE|DDB_G0292698 [details] [associations]
symbol:DDB_G0292698 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
Length = 306
Score = 159 (61.0 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 33/95 (34%), Positives = 51/95 (53%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
N GNTL+V+ L+ R E DL F+ GKV C ++++P T+ SRGF FVT ++A+
Sbjct: 68 NNGNTLHVSNLNPRTRESDLRDTFASIGKVIDCTILLDPNTKESRGFGFVTYSSGDEAQD 127
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
I+ L+ + ++G I G Y+G
Sbjct: 128 AIQRLDSTKIDGNTIRVEKSKRSKARDPTPGFYMG 162
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 147 (56.8 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 37/95 (38%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FSK G +A +V + ++R SRGFAFV + VEDA+
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKE 174
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
+ N L+GR I G Y+G
Sbjct: 175 AKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 146 (56.5 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
N GN L+V+G+++R+ E +L++ FSK G V ++ EP T+ SRGF F++ VE+A
Sbjct: 98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATS 157
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
I LN GR + G Y+G
Sbjct: 158 AIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG 192
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FS+ G + +V + RT SRGFAFV + ++D++
Sbjct: 15 DPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKE 74
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
+++ N L+GR I G Y+G
Sbjct: 75 AMEHANGMELDGRRIRVDYSITKRAHTPTPGIYMG 109
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 36/95 (37%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FSK G +A +V + ++R SRGFAFV + V+DA+
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
+ N L+GR I G Y+G
Sbjct: 175 AKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 36/95 (37%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FSK G +A +V + ++R SRGFAFV + V+DA+
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
+ N L+GR I G Y+G
Sbjct: 175 AKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 36/95 (37%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FSK G +A +V + ++R SRGFAFV + V+DA+
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
+ N L+GR I G Y+G
Sbjct: 175 AKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 36/95 (37%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FSK G +A +V + ++R SRGFAFV + V+DA+
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
+ N L+GR I G Y+G
Sbjct: 175 AKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 36/95 (37%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FSK G +A +V + ++R SRGFAFV + V+DA+
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
+ N L+GR I G Y+G
Sbjct: 175 AKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 143 (55.4 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FS+ G +A +V + RT SRGFAFV + ++DA+
Sbjct: 132 DPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKE 191
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
++ N L+GR I G Y+G
Sbjct: 192 AMERANGMELDGRRIRVDYSITKRPHTPTPGIYMG 226
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FS+ G ++ +V + RT SRGFAFV + ++D++
Sbjct: 15 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 74
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
++ N L+GR I G Y+G
Sbjct: 75 AMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 109
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FS+ G ++ +V + RT SRGFAFV + ++D++
Sbjct: 15 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 74
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
++ N L+GR I G Y+G
Sbjct: 75 AMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 109
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 141 (54.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FS+ G + +V + RT SRGFAFV + ++D++
Sbjct: 118 DPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKE 177
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
+++ N L+GR I G Y+G
Sbjct: 178 AMEHANGMELDGRRIRVDYSITKRAHTPTPGIYMG 212
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 138 (53.6 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FS+ G ++ +V + RT SRGFAFV + ++D++
Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 175
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
++ N L+GR I G Y+G
Sbjct: 176 AMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 210
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 138 (53.6 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FS+ G ++ +V + RT SRGFAFV + ++D++
Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 175
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
++ N L+GR I G Y+G
Sbjct: 176 AMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 210
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 138 (53.6 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 35/95 (36%), Positives = 48/95 (50%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TE DL + FSK G +A +V + ++R SRGFAFV + V+DA+
Sbjct: 107 DPNCCLGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 166
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
+ N L+GR I G Y+G
Sbjct: 167 AKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 201
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 138 (53.6 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FS+ G ++ +V + RT SRGFAFV + ++D++
Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 175
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
++ N L+GR I G Y+G
Sbjct: 176 AMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 210
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 138 (53.6 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FS+ G ++ +V + RT SRGFAFV + ++D++
Sbjct: 114 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 173
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
++ N L+GR I G Y+G
Sbjct: 174 AMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 208
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 138 (53.6 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FS+ G ++ +V + RT SRGFAFV + ++D++
Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 175
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
++ N L+GR I G Y+G
Sbjct: 176 AMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 210
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 138 (53.6 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FS+ G ++ +V + RT SRGFAFV + ++D++
Sbjct: 114 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 173
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
++ N L+GR I G Y+G
Sbjct: 174 AMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 208
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GL+ TE LE+ FSK G+VA +V + ++ SRGF FVT + EDA+ + +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 139 (54.0 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T +E+ LE +FSK G+++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAAREMNGKPLDGKPI 79
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 131 (51.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|E1BDE7 [details] [associations]
symbol:SAFB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 OMA:GTEDNGL EMBL:DAAA02019580
IPI:IPI00837910 Ensembl:ENSBTAT00000044703 Uniprot:E1BDE7
Length = 954
Score = 135 (52.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDA 74
+ + G L+V+GLS+ DL+ FSK GKV +V R+ +R + FVTM ++A
Sbjct: 401 SNSSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEA 460
Query: 75 ERCIKYLNQSVLEGRYI 91
+CI +L+++ L GR I
Sbjct: 461 TKCISHLHRTELHGRMI 477
Score = 33 (16.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 176 GSPERKYARGSR 187
G P ++AR SR
Sbjct: 811 GGPPERHARDSR 822
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 136 (52.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G+V L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + LN L+G+ I
Sbjct: 62 AKDAARELNGKALDGKPI 79
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 136 (52.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G+V L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + LN L+G+ I
Sbjct: 62 AKDAARELNGKALDGKPI 79
>ZFIN|ZDB-GENE-030131-698 [details] [associations]
symbol:safb "scaffold attachment factor B"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360
SMART:SM00513 ZFIN:ZDB-GENE-030131-698 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 EMBL:BX323550 EMBL:BX901933
IPI:IPI00993560 Ensembl:ENSDART00000129766 ArrayExpress:F1QVW3
Bgee:F1QVW3 Uniprot:F1QVW3
Length = 888
Score = 141 (54.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G L+V+GLS+ DL+ FSK GKV +V R+ +R + FVTM +E+A +CI
Sbjct: 417 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMCSIEEATKCI 476
Query: 79 KYLNQSVLEGRYI 91
+L+++ L GR I
Sbjct: 477 SHLHRTELHGRMI 489
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 131 (51.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 132 (51.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 5 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 64 AKDAARDMNGKSLDGKAI 81
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 132 (51.5 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>UNIPROTKB|F1LVK5 [details] [associations]
symbol:F1LVK5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 IPI:IPI00569674 PRIDE:F1LVK5
Ensembl:ENSRNOT00000007700 Uniprot:F1LVK5
Length = 249
Score = 130 (50.8 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E +P L V GLS +TERDL + FSK G VA +V + ++ SR FAFV + ++D
Sbjct: 81 ENPDPNYFLGVFGLSLYITERDLREVFSKYGPVADVSIVYDQQSSQSREFAFVCFENIDD 140
Query: 74 AERCIKYLNQSVLEG 88
A+ ++ N L+G
Sbjct: 141 AKEAKEHANGMELDG 155
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 130 (50.8 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 32/70 (45%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
+YV L+ VT+ LE FS++GKV S + P T S GF FVT ED E I L
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238
Query: 82 NQSVLEGRYI 91
N S+LEG+ I
Sbjct: 239 NNSLLEGQKI 248
Score = 97 (39.2 bits), Expect = 0.00014, P = 0.00014
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
+Y+ + VT L K + G V ++ + + SR F F TM VEDA ++ L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 82 NQSVLEGRYI 91
N + +EGR I
Sbjct: 138 NGNTVEGREI 147
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 132 (51.5 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 134 (52.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 128 (50.1 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS TE+ LE+ FSK G +A ++ + T SRGF FVT + EDA+ + +
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 85 NGKQVDGRMI 94
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GL+ ER LE HFS G ++ +V + T+ SRGF F+T E A ++ +
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 82 NQSVLEGRYI 91
N L+GR I
Sbjct: 68 NGESLDGRQI 77
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 131 (51.2 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKSVDGRQI 77
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 133 (51.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+ E+ LE F K G+++ L+ + T SRGFAF+T + D
Sbjct: 3 EADRPGK-LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ ++ +N L+G+ I
Sbjct: 62 AKAAVRDMNGKSLDGKAI 79
>UNIPROTKB|F1PPN1 [details] [associations]
symbol:SAFB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 EMBL:AAEX03012513
Ensembl:ENSCAFT00000029866 Uniprot:F1PPN1
Length = 953
Score = 138 (53.6 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 15 TG-NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
TG N G L+V+GLS+ DL+ F+K GKV +V R+ +R + FVTM ++
Sbjct: 401 TGSNSGRNLWVSGLSSTTRATDLKNLFNKYGKVVGAKVVTNARSPGARCYGFVTMSTSDE 460
Query: 74 AERCIKYLNQSVLEGRYI 91
A +CI +L+++ L GR I
Sbjct: 461 ATKCISHLHRTELHGRMI 478
>UNIPROTKB|J9JHN8 [details] [associations]
symbol:SAFB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 OMA:GTEDNGL EMBL:AAEX03012513
Ensembl:ENSCAFT00000045160 Uniprot:J9JHN8
Length = 954
Score = 138 (53.6 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 15 TG-NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
TG N G L+V+GLS+ DL+ F+K GKV +V R+ +R + FVTM ++
Sbjct: 402 TGSNSGRNLWVSGLSSTTRATDLKNLFNKYGKVVGAKVVTNARSPGARCYGFVTMSTSDE 461
Query: 74 AERCIKYLNQSVLEGRYI 91
A +CI +L+++ L GR I
Sbjct: 462 ATKCISHLHRTELHGRMI 479
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 136 (52.9 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERC 77
P L++ L T L +HFS+ + +VV+P+T+ S+G+ FVT VEDA+
Sbjct: 35 PRRELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAA 94
Query: 78 IKYLNQSVLEGRYI 91
++ LN S EG+ I
Sbjct: 95 LEELNGSTFEGKKI 108
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 132 (51.5 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDAARDMNGKSLDGKAI 79
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 132 (51.5 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 4 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 62
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 63 AKDAARDMNGKSLDGKAI 80
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GL+ E LE+ F+K G+++ +V + T+ SRGF FVT + V+DA+ + +
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 67 NGKSVDGRQI 76
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G+ LYV L+ RV + DLE+ F+ G V S +V++ T SRGF FV M ++A+ I
Sbjct: 2 GSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAI 61
Query: 79 KYLNQSVLEGR 89
LN ++GR
Sbjct: 62 AGLNGKEMDGR 72
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GL+ E LE+ FSK G+++ +V + T+ SRGF FVT + +DA+ + +
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 67 NGKAVDGRQI 76
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE FSK G++ +V + T+ SRGF FVT + EDA+ + +
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 68 NGKTVDGRQI 77
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 131 (51.2 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDVARDMNGKSLDGKAI 79
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 131 (51.2 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKDVARDMNGKSLDGKAI 79
>UNIPROTKB|K7GKR9 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
Length = 196
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVL 86
A+ + +N +L
Sbjct: 62 AKDAARDMNGKLL 74
>TAIR|locus:2179624 [details] [associations]
symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
++L+V G S V+E L+K FS+ G+V + ++ RTR S G+ +V + EDA+ ++
Sbjct: 77 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136
Query: 80 YLNQSVLEGRYI 91
+N +GR+I
Sbjct: 137 AMNGKFFDGRFI 148
>UNIPROTKB|G3X6B1 [details] [associations]
symbol:LOC787645 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102108 EMBL:DAAA02019579 EMBL:DAAA02019580
Ensembl:ENSBTAT00000002342 Uniprot:G3X6B1
Length = 699
Score = 134 (52.2 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FSK GKV +V R+ +R + FVTM VE+A +CI
Sbjct: 346 GRYFWVSGLSSTTRAADLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTVEEATKCI 405
Query: 79 KYLNQSVLEGRYI 91
+L+++ L G+ I
Sbjct: 406 NHLHKTELHGKMI 418
>UNIPROTKB|F1SBU9 [details] [associations]
symbol:SAFB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 OMA:GTEDNGL EMBL:CU928983
Ensembl:ENSSSCT00000014770 Uniprot:F1SBU9
Length = 953
Score = 135 (52.6 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDA 74
+ + G L+V+GLS+ DL+ FSK GKV +V R+ +R + FVTM ++A
Sbjct: 399 SSSSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEA 458
Query: 75 ERCIKYLNQSVLEGRYI 91
+CI +L+++ L GR I
Sbjct: 459 TKCISHLHRTELHGRMI 475
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GL+ E+ LE HFS G ++ +V + T+ SRGF F+T E A ++ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 82 NQSVLEGRYI 91
N L+GR I
Sbjct: 68 NGESLDGRQI 77
>MGI|MGI:2146808 [details] [associations]
symbol:Safb2 "scaffold attachment factor B2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
MGI:MGI:2146808 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108
eggNOG:NOG248048 HOGENOM:HOG000092533 HOVERGEN:HBG078408
OrthoDB:EOG4F4S9X CTD:9667 OMA:GTEDNGL ChiTaRS:SAFB2 EMBL:BC050855
EMBL:BC028827 IPI:IPI00857736 RefSeq:NP_001025150.2
UniGene:Mm.214973 UniGene:Mm.482517 ProteinModelPortal:Q80YR5
SMR:Q80YR5 PhosphoSite:Q80YR5 PaxDb:Q80YR5 PRIDE:Q80YR5
Ensembl:ENSMUST00000075510 GeneID:224902 KEGG:mmu:224902
UCSC:uc008dcg.1 NextBio:377444 Bgee:Q80YR5 CleanEx:MM_SAFB2
Genevestigator:Q80YR5 GermOnline:ENSMUSG00000042625 Uniprot:Q80YR5
Length = 991
Score = 135 (52.6 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G L+V+GLS+ DL+ FSK GKV +V R+ +R + FVTM ++A +CI
Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509
Query: 79 KYLNQSVLEGRYI 91
+L+++ L GR I
Sbjct: 510 SHLHRTELHGRMI 522
>UNIPROTKB|H9KZ12 [details] [associations]
symbol:H9KZ12 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 EMBL:AADN02043355 EMBL:AADN02043356
Ensembl:ENSGALT00000003015 OMA:HERDERQ Uniprot:H9KZ12
Length = 873
Score = 134 (52.2 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G L+V+GLS+ DL+ FSK GKV +V R+ +R + FVTM E+A +CI
Sbjct: 404 GRNLWVSGLSSSTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSEEATKCI 463
Query: 79 KYLNQSVLEGRYI 91
+L+++ L G+ I
Sbjct: 464 NHLHRTELHGKMI 476
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+ E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKAAARDMNGKSLDGKAI 79
>UNIPROTKB|H9L022 [details] [associations]
symbol:SAFB2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 OMA:DKADRKD EMBL:AADN02043356
Ensembl:ENSGALT00000021807 Uniprot:H9L022
Length = 762
Score = 133 (51.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAE 75
G G +V+GL++ DL+ FSK GKV +V R+ +R + FVTM E+A
Sbjct: 400 GGSGRNFWVSGLASTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEAT 459
Query: 76 RCIKYLNQSVLEGRYI 91
+CI +L+++ L G+ I
Sbjct: 460 KCITHLHKTELHGKII 475
>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
symbol:tra2b "transformer 2 beta homolog
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
Uniprot:Q7ZUG9
Length = 278
Score = 126 (49.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 33/95 (34%), Positives = 47/95 (49%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
+P L V GLS TERDL + FSK G ++ +V + ++R SRGFA V + ED++
Sbjct: 120 DPNCCLGVFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENREDSKE 179
Query: 77 CIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
+ N L+GR I G Y+G
Sbjct: 180 AKERANGMELDGRRIRVDYSITKGPHTPTPGIYMG 214
>UNIPROTKB|Q14151 [details] [associations]
symbol:SAFB2 "Scaffold attachment factor B2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102
PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 Gene3D:1.10.720.30
EMBL:AC004611 eggNOG:NOG248048 HOGENOM:HOG000092533
HOVERGEN:HBG078408 OrthoDB:EOG4F4S9X EMBL:D50928 EMBL:BC025279
IPI:IPI00005648 RefSeq:NP_055464.1 UniGene:Hs.655392
ProteinModelPortal:Q14151 SMR:Q14151 IntAct:Q14151
MINT:MINT-5006081 STRING:Q14151 PhosphoSite:Q14151 DMDM:38372432
PaxDb:Q14151 PeptideAtlas:Q14151 PRIDE:Q14151
Ensembl:ENST00000252542 GeneID:9667 KEGG:hsa:9667 UCSC:uc002mcd.3
CTD:9667 GeneCards:GC19M005587 HGNC:HGNC:21605 HPA:HPA050894
MIM:608066 neXtProt:NX_Q14151 PharmGKB:PA134987683
InParanoid:Q14151 OMA:GTEDNGL PhylomeDB:Q14151 ChiTaRS:SAFB2
GenomeRNAi:9667 NextBio:36299 ArrayExpress:Q14151 Bgee:Q14151
CleanEx:HS_SAFB2 Genevestigator:Q14151 GermOnline:ENSG00000130254
Uniprot:Q14151
Length = 953
Score = 134 (52.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G L+V+GLS+ DL+ FSK GKV +V R+ +R + FVTM ++A +CI
Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465
Query: 79 KYLNQSVLEGRYI 91
+L+++ L GR I
Sbjct: 466 SHLHRTELHGRMI 478
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 5 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63
Query: 74 AERCIKYLNQSVL 86
A+ + +N ++
Sbjct: 64 AKDAARDMNGKMM 76
>UNIPROTKB|F5GZU3 [details] [associations]
symbol:SAFB "Scaffold attachment factor B1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC011499 EMBL:AC004611 EMBL:AC134303 HGNC:HGNC:10520
ChiTaRS:SAFB IPI:IPI00983392 ProteinModelPortal:F5GZU3 SMR:F5GZU3
Ensembl:ENST00000433404 UCSC:uc010xiu.2 ArrayExpress:F5GZU3
Bgee:F5GZU3 Uniprot:F5GZU3
Length = 747
Score = 132 (51.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FSK GKV +V R+ +R + FVTM E+A +CI
Sbjct: 235 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 294
Query: 79 KYLNQSVLEGRYI 91
+L+++ L G+ I
Sbjct: 295 NHLHKTELHGKMI 307
>UNIPROTKB|B7Z2F6 [details] [associations]
symbol:SAFB "cDNA FLJ54744, highly similar to Scaffold
attachment factor B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011499
EMBL:AC004611 EMBL:AC134303 UniGene:Hs.728802 HGNC:HGNC:10520
HOVERGEN:HBG078408 ChiTaRS:SAFB EMBL:AK294671 IPI:IPI01018318
SMR:B7Z2F6 STRING:B7Z2F6 Ensembl:ENST00000538656 UCSC:uc010xit.2
Uniprot:B7Z2F6
Length = 759
Score = 132 (51.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FSK GKV +V R+ +R + FVTM E+A +CI
Sbjct: 248 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 307
Query: 79 KYLNQSVLEGRYI 91
+L+++ L G+ I
Sbjct: 308 NHLHKTELHGKMI 320
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 3 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLN 82
A+ + +N
Sbjct: 62 AKDAARDMN 70
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSV 85
N V
Sbjct: 68 NGKV 71
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT + D
Sbjct: 5 EADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 63
Query: 74 AERCIKYLN 82
A+ + +N
Sbjct: 64 AKDAARDMN 72
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GL+ E+ LE HFS G ++ +V + T+ SRGF F+T E A ++ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 82 NQSVLEGRYI 91
N L+GR I
Sbjct: 68 NGESLDGRQI 77
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GL+ E+ LE HFS G ++ +V + T+ SRGF F+T E A ++ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 82 NQSVLEGRYI 91
N L+GR I
Sbjct: 68 NGESLDGRQI 77
>FB|FBgn0039229 [details] [associations]
symbol:Saf-B "Scaffold attachment factor B" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 GO:GO:0005654 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:1.10.720.30 GO:GO:0016363
GO:GO:0000381 FlyBase:FBgn0039229 EMBL:BT001582
ProteinModelPortal:Q8IGV1 STRING:Q8IGV1 PRIDE:Q8IGV1
InParanoid:Q8IGV1 ArrayExpress:Q8IGV1 Bgee:Q8IGV1 Uniprot:Q8IGV1
Length = 977
Score = 133 (51.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V+GLST DL+ FSK GKV +V RT +R + +VTM DA RCI+ L
Sbjct: 363 LWVSGLSTLTRASDLKAIFSKFGKVIGAKVVTNTRTPGTRCYGYVTMSSSADASRCIENL 422
Query: 82 NQSVLEGRYI 91
+++ L GR I
Sbjct: 423 HRTELHGRII 432
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 125 (49.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
GN +YV LS V + LE FS++GKV ++ + + S+GF FVT D ++ + I
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262
Query: 79 KYLNQSVLEGRYI 91
K L+ + L+GR I
Sbjct: 263 KSLDGADLDGRQI 275
>UNIPROTKB|E1B9I2 [details] [associations]
symbol:SAFB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102
PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
EMBL:DAAA02019576 GeneTree:ENSGT00690000102108 OMA:DKADRKD
EMBL:DAAA02019577 EMBL:DAAA02019578 EMBL:DAAA02019579
IPI:IPI01000416 Ensembl:ENSBTAT00000002344 Uniprot:E1B9I2
Length = 902
Score = 132 (51.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FSK GKV +V R+ +R + FVTM E+A +CI
Sbjct: 404 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 463
Query: 79 KYLNQSVLEGRYI 91
+L+++ L G+ I
Sbjct: 464 NHLHKTELHGKMI 476
>UNIPROTKB|Q15424 [details] [associations]
symbol:SAFB "Scaffold attachment factor B1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001047 "core promoter binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=IEA] [GO:0040007 "growth" evidence=IEA] [GO:0042445
"hormone metabolic process" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003690 "double-stranded DNA binding" evidence=TAS] [GO:0006325
"chromatin organization" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360
SMART:SM00513 GO:GO:0005634 GO:GO:0040007 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351 GO:GO:0003682
GO:GO:0003723 Gene3D:1.10.720.30 GO:GO:0003690 GO:GO:0001047
GO:GO:0042445 GO:GO:0030520 GO:GO:0006325 EMBL:AC011499 EMBL:U72355
EMBL:AK298707 EMBL:AC004611 EMBL:AC134303 EMBL:AB208780 EMBL:L43631
IPI:IPI00300631 IPI:IPI00941773 PIR:S64732 RefSeq:NP_002958.2
UniGene:Hs.728802 ProteinModelPortal:Q15424 SMR:Q15424
IntAct:Q15424 MINT:MINT-1033560 STRING:Q15424 PhosphoSite:Q15424
DMDM:116242782 PaxDb:Q15424 PRIDE:Q15424 Ensembl:ENST00000292123
Ensembl:ENST00000454510 GeneID:6294 KEGG:hsa:6294 UCSC:uc002mcf.3
CTD:6294 GeneCards:GC19P005574 H-InvDB:HIX0014682 HGNC:HGNC:10520
HPA:CAB001969 HPA:HPA016832 HPA:HPA020076 MIM:602895
neXtProt:NX_Q15424 PharmGKB:PA34928 eggNOG:NOG248048
HOGENOM:HOG000092533 HOVERGEN:HBG078408 InParanoid:Q15424
OMA:DKADRKD PhylomeDB:Q15424 ChiTaRS:SAFB GenomeRNAi:6294
NextBio:24435 ArrayExpress:Q15424 Bgee:Q15424 CleanEx:HS_SAFB
Genevestigator:Q15424 GermOnline:ENSG00000160633 Uniprot:Q15424
Length = 915
Score = 132 (51.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FSK GKV +V R+ +R + FVTM E+A +CI
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 79 KYLNQSVLEGRYI 91
+L+++ L G+ I
Sbjct: 465 NHLHKTELHGKMI 477
>UNIPROTKB|B7ZLP6 [details] [associations]
symbol:SAFB "SAFB protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.10.720.30 EMBL:AC011499 EMBL:AC004611
EMBL:AC134303 UniGene:Hs.728802 GeneID:6294 KEGG:hsa:6294 CTD:6294
HGNC:HGNC:10520 HOVERGEN:HBG078408 ChiTaRS:SAFB GenomeRNAi:6294
NextBio:24435 EMBL:BC143939 IPI:IPI00646058 RefSeq:NP_001188268.1
ProteinModelPortal:B7ZLP6 STRING:B7ZLP6 PRIDE:B7ZLP6
Ensembl:ENST00000592224 UCSC:uc002mce.4 Bgee:B7ZLP6 Uniprot:B7ZLP6
Length = 916
Score = 132 (51.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FSK GKV +V R+ +R + FVTM E+A +CI
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 79 KYLNQSVLEGRYI 91
+L+++ L G+ I
Sbjct: 465 NHLHKTELHGKMI 477
>UNIPROTKB|A0AV56 [details] [associations]
symbol:SAFB "SAFB protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102
PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
EMBL:AC011499 EMBL:AC004611 EMBL:AC134303 UniGene:Hs.728802
GeneID:6294 KEGG:hsa:6294 CTD:6294 HGNC:HGNC:10520
HOGENOM:HOG000092533 HOVERGEN:HBG078408 ChiTaRS:SAFB
GenomeRNAi:6294 NextBio:24435 OrthoDB:EOG4F4S9X EMBL:BC126219
EMBL:BC143937 IPI:IPI00983392 RefSeq:NP_001188267.1
ProteinModelPortal:A0AV56 SMR:A0AV56 STRING:A0AV56 PRIDE:A0AV56
Ensembl:ENST00000588852 UCSC:uc002mcg.3 ArrayExpress:A0AV56
Bgee:A0AV56 Uniprot:A0AV56
Length = 917
Score = 132 (51.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FSK GKV +V R+ +R + FVTM E+A +CI
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 79 KYLNQSVLEGRYI 91
+L+++ L G+ I
Sbjct: 465 NHLHKTELHGKMI 477
>UNIPROTKB|F1S7J6 [details] [associations]
symbol:SAFB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042445 "hormone
metabolic process" evidence=IEA] [GO:0040007 "growth" evidence=IEA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 GO:GO:0005634 GO:GO:0040007
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
Gene3D:1.10.720.30 GO:GO:0001047 GO:GO:0042445 GO:GO:0030520
GeneTree:ENSGT00690000102108 OMA:DKADRKD EMBL:CU928983
EMBL:FP089464 Ensembl:ENSSSCT00000014769 Uniprot:F1S7J6
Length = 920
Score = 132 (51.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FSK GKV +V R+ +R + FVTM E+A +CI
Sbjct: 407 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 466
Query: 79 KYLNQSVLEGRYI 91
+L+++ L G+ I
Sbjct: 467 NHLHKTELHGKMI 479
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 121 (47.7 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
+T+YV+ L +T DL + FSK GKV ++ + TR S+G AF+ E A+ C +
Sbjct: 10 STVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCSR 69
Query: 80 YLNQSVLEGRYI 91
LN L GR I
Sbjct: 70 ALNNKQLFGRVI 81
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GL+ E+ LE HFS G ++ +V + T+ SRGF F+T E A ++ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 82 NQSVLEGRYI 91
N L+GR I
Sbjct: 68 NGESLDGRQI 77
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GL+ E+ LE HFS G ++ +V + T+ SRGF F+T E A ++ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 82 NQSVLEGRYI 91
N L+GR I
Sbjct: 68 NGESLDGRQI 77
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V+ LS T++ L + FS G++ L+ + T+ +GF F+T D +DA + +K L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 82 NQSVLEGRYI 91
+ +++GR I
Sbjct: 69 DGKIVDGRLI 78
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS TE+ LE FSK G + + + T SRGF FVT + +DA+ ++ +
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 82 NQSVLEGRYI 91
N ++GR I
Sbjct: 67 NGKSVDGRTI 76
>UNIPROTKB|E2QYH6 [details] [associations]
symbol:SAFB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102
PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 EMBL:AAEX03012513
Ensembl:ENSCAFT00000029855 OMA:WELEERE Uniprot:E2QYH6
Length = 1054
Score = 132 (51.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FSK GKV +V R+ +R + FVTM E+A +CI
Sbjct: 543 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 602
Query: 79 KYLNQSVLEGRYI 91
+L+++ L G+ I
Sbjct: 603 NHLHKTELHGKMI 615
>GENEDB_PFALCIPARUM|MAL8P1.83 [details] [associations]
symbol:MAL8P1.83 "eukaryotictranslation
initiation factor, putative" species:5833 "Plasmodium falciparum"
[GO:0006412 "translation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743 HSSP:P19339
KO:K03248 PANTHER:PTHR10352 HOGENOM:HOG000239560 EMBL:AL844507
RefSeq:XP_001349368.1 ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3
MINT:MINT-1709542 EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434
KEGG:pfa:MAL8P1.83 EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR
ProtClustDB:CLSZ2435783 Uniprot:Q8IAZ3
Length = 266
Score = 123 (48.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
+T N T+ VT LS V E +L F K G + FL T+ S+GFAF+T E+
Sbjct: 179 DTQNKECTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREE 238
Query: 74 AERCIKYLNQSVLE 87
A+R I+ LN+ E
Sbjct: 239 AKRAIEKLNRHGFE 252
>UNIPROTKB|Q8IAZ3 [details] [associations]
symbol:MAL8P1.83 "Eukaryotic translation initiation factor
3 subunit G" species:36329 "Plasmodium falciparum 3D7" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 HSSP:P19339 KO:K03248 PANTHER:PTHR10352
HOGENOM:HOG000239560 EMBL:AL844507 RefSeq:XP_001349368.1
ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3 MINT:MINT-1709542
EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434 KEGG:pfa:MAL8P1.83
EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR ProtClustDB:CLSZ2435783
Uniprot:Q8IAZ3
Length = 266
Score = 123 (48.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
+T N T+ VT LS V E +L F K G + FL T+ S+GFAF+T E+
Sbjct: 179 DTQNKECTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREE 238
Query: 74 AERCIKYLNQSVLE 87
A+R I+ LN+ E
Sbjct: 239 AKRAIEKLNRHGFE 252
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 N 82
N
Sbjct: 68 N 68
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 119 (46.9 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS + T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 9 LFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 69 PHKV-DGRVV 77
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 104 (41.7 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERC 77
P ++L+V +S DL + F + G + ++ ++ +R RGFA++ + V DAE
Sbjct: 8 PNSSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDA 67
Query: 78 IKYLNQSVLEGRYI 91
+ L++ + GR I
Sbjct: 68 LHNLDRKWVCGRQI 81
Score = 34 (17.0 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 177 SPERKYARGSR 187
SP R ARG R
Sbjct: 181 SPSRSRARGGR 191
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T ISRG F+ D +AE IK L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 82 N 82
N
Sbjct: 187 N 187
Score = 89 (36.4 bits), Expect = 0.00056, P = 0.00056
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDA 74
T + L V L +T+ +L+ F G++ SC LV + T S G+ FV +DA
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 75 ERCIKYLNQSVLEGRYI 91
E+ I LN L+ + I
Sbjct: 94 EKAINTLNGLRLQTKTI 110
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GL+ E+ LE HFS G ++ +V + T+ SRGF F+T E A ++ +
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 82 NQSVLEGRYI 91
N L+GR I
Sbjct: 68 NGKSLDGRQI 77
>UNIPROTKB|J9NS74 [details] [associations]
symbol:J9NS74 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 EMBL:AAEX03026257
Ensembl:ENSCAFT00000046273 OMA:TTHQEAI Uniprot:J9NS74
Length = 186
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E +PG L++ GL+T+ E+ LE F K GK+ L+ + T SR FAFVT + D
Sbjct: 3 EADHPGK-LFIVGLNTKTIEKCLETVFDKYGKIVEVILMKDHETNKSREFAFVTFESPAD 61
Query: 74 AERCIKYLN 82
A+ + +N
Sbjct: 62 AKDAARDVN 70
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 124 (48.7 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE--DAERCIK 79
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE DA C +
Sbjct: 38 LFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCAR 97
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 124 (48.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE--DAERCIK 79
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE DA C +
Sbjct: 38 LFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCAR 97
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 122 (48.0 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE+ + +
Sbjct: 11 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 70
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 71 PHKV-DGRVV 79
>DICTYBASE|DDB_G0278349 [details] [associations]
symbol:tra2 "putative transformer-2 protein"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0278349 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 HSSP:P62995 KO:K12897 eggNOG:NOG297815
RefSeq:XP_642304.1 ProteinModelPortal:Q54Y98 PRIDE:Q54Y98
EnsemblProtists:DDB0233352 GeneID:8621510 KEGG:ddi:DDB_G0278349
OMA:GIHPRLT Uniprot:Q54Y98
Length = 326
Score = 123 (48.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 31/97 (31%), Positives = 45/97 (46%)
Query: 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDA 74
T +P N L V GL+ + ERDL+ FS+ GK+ L+++ +T S+ F FV + EDA
Sbjct: 108 TASPSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKEDA 167
Query: 75 ERCIKYLNQSVLEGRYIXXXXXXXXXXXXXXXGHYLG 111
R + L G+ I G Y G
Sbjct: 168 VRAKEECQDLQLHGKSIRTDFSATKKPHEPTPGKYFG 204
>RGD|620613 [details] [associations]
symbol:Safb "scaffold attachment factor B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0040007 "growth" evidence=ISO] [GO:0042445 "hormone metabolic
process" evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0050684
"regulation of mRNA processing" evidence=IDA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 RGD:620613 GO:GO:0005634 GO:GO:0000166
GO:GO:0043565 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0006351
GO:GO:0003723 Gene3D:1.10.720.30 GO:GO:0050684 CTD:6294
HOVERGEN:HBG078408 EMBL:AF056324 IPI:IPI00209618 RefSeq:NP_071789.1
UniGene:Rn.88640 ProteinModelPortal:O88453 IntAct:O88453
PhosphoSite:O88453 PRIDE:O88453 GeneID:64196 KEGG:rno:64196
NextBio:612872 Genevestigator:O88453 Uniprot:O88453
Length = 931
Score = 129 (50.5 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FS+ GKV +V R+ +R + FVTM E+A +CI
Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486
Query: 79 KYLNQSVLEGRYI 91
+L+++ L G+ I
Sbjct: 487 NHLHKTELHGKMI 499
>MGI|MGI:2146974 [details] [associations]
symbol:Safb "scaffold attachment factor B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0030520 "intracellular estrogen receptor
signaling pathway" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042445 "hormone metabolic process" evidence=IMP] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0050684 "regulation of mRNA processing"
evidence=ISO] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 MGI:MGI:2146974 GO:GO:0005634
GO:GO:0040007 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0006351 GO:GO:0003682 GO:GO:0003723 Gene3D:1.10.720.30
GO:GO:0001047 GO:GO:0042445 GO:GO:0030520 EMBL:CH466537
EMBL:CT485788 GeneTree:ENSGT00690000102108 CTD:6294
HOGENOM:HOG000092533 OMA:DKADRKD ChiTaRS:SAFB EMBL:BC018200
EMBL:AK087504 IPI:IPI00944159 RefSeq:NP_001156772.1
UniGene:Mm.255066 ProteinModelPortal:D3YXK2 SMR:D3YXK2
IntAct:D3YXK2 PRIDE:D3YXK2 Ensembl:ENSMUST00000095224 GeneID:224903
KEGG:mmu:224903 UCSC:uc008dck.2 OrthoDB:EOG4F4S9X NextBio:377448
Bgee:D3YXK2 Uniprot:D3YXK2
Length = 937
Score = 129 (50.5 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FS+ GKV +V R+ +R + FVTM E+A +CI
Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486
Query: 79 KYLNQSVLEGRYI 91
+L+++ L G+ I
Sbjct: 487 SHLHKTELHGKMI 499
>UNIPROTKB|J3KQ82 [details] [associations]
symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
Ensembl:ENST00000454978 Uniprot:J3KQ82
Length = 459
Score = 125 (49.1 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E +PG L++ GL+ E+ L+ F K G ++ L+++ RT SRGFAF+T + D
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEV-LLIKDRTSKSRGFAFITFENPAD 60
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ K +N + L G+ I
Sbjct: 61 AKNAAKDMNGTSLHGKAI 78
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 122 (48.0 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE+ + +
Sbjct: 23 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 82
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 83 PHKV-DGRVV 91
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 123 (48.4 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE--DAERCIK 79
L++ GLS + L +HF K G + C ++ +P+T+ SRGF FVT VE DA C
Sbjct: 34 LFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAMCA- 92
Query: 80 YLNQSVLEGRYI 91
+L++ ++GR +
Sbjct: 93 WLHK--VDGRVV 102
>UNIPROTKB|Q15415 [details] [associations]
symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
Uniprot:Q15415
Length = 496
Score = 125 (49.1 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E +PG L++ GL+ E+ L+ F K G ++ L+++ RT SRGFAF+T + D
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEV-LLIKDRTSKSRGFAFITFENPAD 60
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ K +N + L G+ I
Sbjct: 61 AKNAAKDMNGTSLHGKAI 78
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 122 (48.0 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G ++V GLS +++DL+ +F+K G+V+ C + ++P T SRGF F+ E ++ +
Sbjct: 63 GVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVL 122
Query: 79 KYLNQSVLEGRYI 91
++ + L+GR I
Sbjct: 123 EH-KEHRLDGRLI 134
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 121 (47.7 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAE 75
GN + ++V GLS VTER LE F + GK+ C ++V T RGF F+T A+
Sbjct: 8 GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67
Query: 76 RCIKYLNQSVLEGRYI 91
IK+++ L + I
Sbjct: 68 DAIKHMHGRELGNKVI 83
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 117 (46.2 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 12 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 71
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 72 PHKV-DGRVV 80
>UNIPROTKB|B7ZMD9 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
Length = 459
Score = 124 (48.7 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E +PG L++ GL+ E+ L+ F K G ++ L+++ RT SRGFAF+T + D
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEV-LLIKDRTSKSRGFAFITFENPAD 60
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ K +N L G+ I
Sbjct: 61 AKNAAKDMNGKSLHGKAI 78
>UNIPROTKB|J3KPK3 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
Ensembl:ENST00000382658 Uniprot:J3KPK3
Length = 459
Score = 124 (48.7 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E +PG L++ GL+ E+ L+ F K G ++ L+++ RT SRGFAF+T + D
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEV-LLIKDRTSKSRGFAFITFENPAD 60
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ K +N L G+ I
Sbjct: 61 AKNAAKDMNGKSLHGKAI 78
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E +PG L++ GL+ E+ L+ F K G ++ L+++ RT SRGFAF+T + D
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEV-LLIKDRTSKSRGFAFITFENPAD 60
Query: 74 AERCIKYLNQSVL 86
A+ K +N ++
Sbjct: 61 AKNAAKDMNGKMM 73
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEP-RTRISRGFAFVTMDGVEDAERCI 78
+TL+V G+S TE L + FS+ G+V ++++ R R +GFA+VT E+AE+ +
Sbjct: 21 STLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCR-PKGFAYVTFSSKEEAEKAL 79
Query: 79 KYLNQSVLEGRYI 91
LN +++GR +
Sbjct: 80 LELNAQLVDGRVV 92
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 126 (49.4 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
N +TL+V L+ + + DL FS G + +V P T +RG+ FVT +EDA+R
Sbjct: 2 NSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Query: 77 CIKYLNQSVLEGRYI 91
K L L GR +
Sbjct: 62 AAKELKNKKLHGRIL 76
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 117 (46.2 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
+T+YV+ L +T DL + FSK GKV ++ + TR S+G AF+ + A+ C +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTR 69
Query: 80 YLNQSVLEGRYI 91
+N L GR I
Sbjct: 70 AINNKQLFGRVI 81
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 117 (46.2 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
+T+YV+ L +T DL + FSK GKV ++ + TR S+G AF+ + A+ C +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 69
Query: 80 YLNQSVLEGRYI 91
+N L GR I
Sbjct: 70 AINNKQLFGRVI 81
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 121 (47.7 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE--DAERCIK 79
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE DA C +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
>ZFIN|ZDB-GENE-041210-114 [details] [associations]
symbol:zcrb1 "zinc finger CCHC-type and RNA binding
motif 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-041210-114 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:AL929504 GeneTree:ENSGT00600000084414
HSSP:Q7YZ92 CTD:85437 HOGENOM:HOG000007632 KO:K13154
OrthoDB:EOG4GXFNW EMBL:BC092992 IPI:IPI00501794
RefSeq:NP_001017589.1 UniGene:Dr.80171 ProteinModelPortal:Q5SP50
SMR:Q5SP50 Ensembl:ENSDART00000067174 GeneID:550251 KEGG:dre:550251
eggNOG:NOG270852 InParanoid:Q5SP50 OMA:YRYSSVA NextBio:20879514
Bgee:Q5SP50 Uniprot:Q5SP50
Length = 218
Score = 117 (46.2 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
+T+YV+ + +T D+ K SK GKV +V + TR+S+G AFV E A C +
Sbjct: 10 STVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYNCSR 69
Query: 80 YLNQSVLEGRYI 91
LN L GR +
Sbjct: 70 SLNNKQLFGRMV 81
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 121 (47.7 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE--DAERCIK 79
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE DA C +
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 74
>UNIPROTKB|A6NDE4 [details] [associations]
symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
family 1 member B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
Genevestigator:A6NDE4 Uniprot:A6NDE4
Length = 496
Score = 124 (48.7 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E +PG L++ GL+ E+ L+ F K G ++ L+++ RT SRGFAF+T + D
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEV-LLIKDRTSKSRGFAFITFENPAD 60
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ K +N L G+ I
Sbjct: 61 AKNAAKDMNGKSLHGKAI 78
>UNIPROTKB|A6NEQ0 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
Genevestigator:A6NEQ0 Uniprot:A6NEQ0
Length = 496
Score = 124 (48.7 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E +PG L++ GL+ E+ L+ F K G ++ L+++ RT SRGFAF+T + D
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEV-LLIKDRTSKSRGFAFITFENPAD 60
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ K +N L G+ I
Sbjct: 61 AKNAAKDMNGKSLHGKAI 78
>UNIPROTKB|P0C7P1 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
Length = 496
Score = 124 (48.7 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E +PG L++ GL+ E+ L+ F K G ++ L+++ RT SRGFAF+T + D
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEV-LLIKDRTSKSRGFAFITFENPAD 60
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ K +N L G+ I
Sbjct: 61 AKNAAKDMNGKSLHGKAI 78
>UNIPROTKB|P0DJD3 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
Uniprot:P0DJD3
Length = 496
Score = 124 (48.7 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E +PG L++ GL+ E+ L+ F K G ++ L+++ RT SRGFAF+T + D
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEV-LLIKDRTSKSRGFAFITFENPAD 60
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ K +N L G+ I
Sbjct: 61 AKNAAKDMNGKSLHGKAI 78
>UNIPROTKB|P0DJD4 [details] [associations]
symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
family 1 member C" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
Uniprot:P0DJD4
Length = 496
Score = 124 (48.7 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E +PG L++ GL+ E+ L+ F K G ++ L+++ RT SRGFAF+T + D
Sbjct: 3 EADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEV-LLIKDRTSKSRGFAFITFENPAD 60
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ K +N L G+ I
Sbjct: 61 AKNAAKDMNGKSLHGKAI 78
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 122 (48.0 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE+ + +
Sbjct: 35 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 94
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 95 PHKV-DGRVV 103
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 117 (46.2 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L + GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE+ + +
Sbjct: 10 LLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCAR 69
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 70 PHKV-DGRVV 78
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GL+ E+ LE HF G ++ +V + T+ SRGF F+T E A ++ +
Sbjct: 8 LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 82 NQSVLEGRYI 91
N L+GR I
Sbjct: 68 NGESLDGRQI 77
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 117 (46.2 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 35 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 94
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 95 PHKV-DGRVV 103
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 121 (47.7 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE--DAERCIK 79
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE DA C +
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 74
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 117 (46.2 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE-DAERCIK 79
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT E DA C +
Sbjct: 15 LFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCAR 73
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 120 (47.3 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C +V++P T+ SRGF FVT VE+ + +
Sbjct: 25 LFIGGLSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRSRGFGFVTYTTVEEVDAAMNAR 83
Query: 82 NQSVLEGRYI 91
Q ++GR +
Sbjct: 84 PQK-MDGRVV 92
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 120 (47.3 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAE 75
L++ GL+ + TE L +HF+ G + C +V+ P+T+ SR F FVT VE+A+
Sbjct: 30 LFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEAD 83
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 121 (47.7 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE--DAERCIK 79
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE DA C +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 121 (47.7 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE--DAERCIK 79
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE DA C +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 121 (47.7 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE--DAERCIK 79
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE DA C +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 121 (47.7 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE--DAERCIK 79
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE DA C +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 121 (47.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE--DAERCIK 79
L++ GLS T+ L +HF K G + C ++ +P+T+ SRGF FVT VE DA C +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 114 (45.2 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE--DAERCIK 79
L++ GLS T+ L +HF K G + C ++ +P+T+ SR F+FVT V+ DA C +
Sbjct: 15 LFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQ 74
Query: 80 YLNQSVLEGRYI 91
N ++GR +
Sbjct: 75 PHN---VDGRVV 83
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GL+ E+ LE HFS G + +V + TR S+GF F+T E A ++
Sbjct: 8 LFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRAT 67
Query: 82 NQSVLEGRYI 91
N L+GR I
Sbjct: 68 NGESLDGRQI 77
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 119 (46.9 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVT 67
G+ ++V GLS VT+RDLE+ FS+ G + C +++E T SRGF F+T
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFIT 54
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 119 (46.9 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
++V GLS T++DL+ +F+K G+V C L ++P T SRGF FV E E+ I
Sbjct: 56 MFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ- 114
Query: 82 NQSVLEGRYI 91
+ L G+ I
Sbjct: 115 KEHKLNGKVI 124
Score = 92 (37.4 bits), Expect = 0.00075, P = 0.00074
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
+T P ++V GLS E + ++F G+V S L +E +T RGF F+T E
Sbjct: 133 KTKEPVKKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEP 192
Query: 74 AERCI--KYLN 82
++ + KY N
Sbjct: 193 VKKIMEKKYHN 203
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 117 (46.2 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
+++ GLS T++DL+ +FSK G+V C L ++P T SRGF FV E ++ +
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 138
Query: 82 NQSVLEGRYI 91
+ L G+ I
Sbjct: 139 KEHKLNGKVI 148
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
+++ GLS T++DL+ +FSK G+V C L ++P T SRGF FV E ++ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 59
Query: 82 NQSVLEGRYI 91
+ L G+ I
Sbjct: 60 KEHKLNGKVI 69
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
T+ + L++ GLS TE+ L + FSK G+V +V++ + S+GF FVT +
Sbjct: 27 TQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASAD 86
Query: 73 DAERCIKYLNQSVLEGRYI 91
+A++ + N L GR I
Sbjct: 87 EAQKALMEFNGQQLNGRTI 105
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 118 (46.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTT 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|Q8N7X1 [details] [associations]
symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
Length = 1067
Score = 125 (49.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVED 73
E P L++ GL+ + E+ L+ F K G + FL+ + +T SRGFAFVT + D
Sbjct: 3 EADRP-EKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPAD 61
Query: 74 AERCIKYLNQSVLEGRYI 91
A+ + +N L+G+ I
Sbjct: 62 AKAAARDMNGKYLDGKAI 79
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 115 (45.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 82 NQSVLEGRYI 91
V GR +
Sbjct: 69 PHKV-NGRVV 77
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 115 (45.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ RGF FVT VE+ + +
Sbjct: 9 LFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNAR 68
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 69 PHKV-DGRVV 77
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 117 (46.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 117 (46.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 117 (46.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 117 (46.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 117 (46.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 117 (46.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 117 (46.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>DICTYBASE|DDB_G0287197 [details] [associations]
symbol:ncbp2 "nuclear cap-binding protein subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0005846 "nuclear cap
binding complex" evidence=IEA;ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000339 "RNA cap binding"
evidence=IEA;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287197 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000398
eggNOG:COG0724 GO:GO:0006370 EMBL:AAFI02000098 GO:GO:0000339
PANTHER:PTHR18847 GO:GO:0005846 HSSP:P52298 KO:K12883
RefSeq:XP_637361.1 ProteinModelPortal:Q54KR9 SMR:Q54KR9
STRING:Q54KR9 EnsemblProtists:DDB0233456 GeneID:8625983
KEGG:ddi:DDB_G0287197 InParanoid:Q54KR9 OMA:KEDAADC
ProtClustDB:CLSZ2497150 Uniprot:Q54KR9
Length = 234
Score = 114 (45.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
+T+YV LS TE L + FSK G++ + ++ + GF FV EDA CIK
Sbjct: 32 STIYVGYLSFYTTEEQLYELFSKCGEIKRIIMGLDRNQKTPCGFCFVEYYSKEDAADCIK 91
Query: 80 YLNQSVLEGRYI 91
Y+N S L+ R I
Sbjct: 92 YINGSKLDERLI 103
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDA 74
+G G LYV L +T +L + F + G V +V + T SRGF FVTM +E+A
Sbjct: 112 SGEEGR-LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
Query: 75 ERCIKYLNQSVLEGRYI 91
+ ++ N S + GR +
Sbjct: 171 KEAMQMFNSSQIGGRTV 187
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 115 (45.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
+TLYV+ L +T D+ FS GKVA ++ + TR SRG AFV EDA + +
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 80 YLNQSVLEGR 89
++ +L GR
Sbjct: 117 SMDAKILNGR 126
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKY 80
++YV GL++ +++ L+ FS G++ S V T IS G+A++ + EDA + I
Sbjct: 5 SIYVGGLNSHISKEILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKAIDD 64
Query: 81 LNQSVLEGRYI 91
LN EG ++
Sbjct: 65 LNDQPFEGNHL 75
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 117 (46.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T ISRG F+ D +AE IK L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 82 N 82
N
Sbjct: 187 N 187
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
+++ GLS T++DL+ +FSK G+V C L ++P T SRGF FV E ++ +
Sbjct: 3 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 61
Query: 82 NQSVLEGRYI 91
+ L G+ I
Sbjct: 62 KEHKLNGKVI 71
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T ISRG F+ D +AE IK L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 82 N 82
N
Sbjct: 187 N 187
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T ISRG F+ D +AE IK L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 82 N 82
N
Sbjct: 187 N 187
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T ISRG F+ D +AE IK L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 82 N 82
N
Sbjct: 187 N 187
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T ISRG F+ D +AE IK L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 82 N 82
N
Sbjct: 187 N 187
>UNIPROTKB|C9JAA9 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010655
EMBL:AC018635 HGNC:HGNC:21863 ChiTaRS:RBM28 IPI:IPI00945927
ProteinModelPortal:C9JAA9 SMR:C9JAA9 STRING:C9JAA9
Ensembl:ENST00000478061 ArrayExpress:C9JAA9 Bgee:C9JAA9
Uniprot:C9JAA9
Length = 283
Score = 115 (45.5 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G TL+V L LE+ FS+ G V CF+V E ++ RGF +VT +ED +R +
Sbjct: 3 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 62
Query: 79 KYLNQSVLEG 88
K + + EG
Sbjct: 63 KEI--TTFEG 70
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 30/74 (40%), Positives = 38/74 (51%)
Query: 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERC 77
P +YV L V LE+ FS+ GKV +V + T SRGF FVTM V++
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Query: 78 IKYLNQSVLEGRYI 91
I L+ LEGR I
Sbjct: 302 ISALDGQNLEGRAI 315
Score = 99 (39.9 bits), Expect = 0.00014, P = 0.00014
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V L+ V + L F + G V ++ T SRGF FVTM V++AE ++
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 82 NQSVLEGRYI 91
N+ L GR +
Sbjct: 212 NRYDLNGRLL 221
>UNIPROTKB|J9NZ20 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
Uniprot:J9NZ20
Length = 217
Score = 112 (44.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
+T+YV+ L +T DL + FSK GKV ++ + TR S+G AF+ + A C +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTR 69
Query: 80 YLNQSVLEGRYI 91
+N L GR I
Sbjct: 70 AINNKQLFGRVI 81
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 112 (44.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
+T+YV+ L +T DL + FSK GKV ++ + TR S+G AF+ + A C +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTR 69
Query: 80 YLNQSVLEGRYI 91
+N L GR I
Sbjct: 70 AINNKQLFGRVI 81
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 112 (44.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
+T+YV+ L +T DL + FSK GKV ++ + TR S+G AF+ + A C +
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTR 69
Query: 80 YLNQSVLEGRYI 91
+N L GR I
Sbjct: 70 AINNKQLFGRVI 81
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 114 (45.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GL+ T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 37 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 96
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 97 PHKV-DGRVV 105
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T ISRG F+ D +AE IK L
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 82 N 82
N
Sbjct: 215 N 215
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T ISRG F+ D +AE IK L
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 82 N 82
N
Sbjct: 216 N 216
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T ISRG F+ D +AE IK L
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 82 N 82
N
Sbjct: 216 N 216
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 112 (44.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
+++ GLS T++DL+ +FSK G+V C L ++P T SRGF FV E ++ +
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 157
Query: 82 NQSVLEGRYI 91
+ L G+ I
Sbjct: 158 KEHKLNGKVI 167
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
N ++V+ L V L++HFSK G + ++VV+ T+ SRGF FVT D + ++ ++
Sbjct: 3 NKIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAME 62
Query: 80 YLNQ 83
N+
Sbjct: 63 AENE 66
>DICTYBASE|DDB_G0279695 [details] [associations]
symbol:DDB_G0279695 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279695 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000032 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_641604.1
ProteinModelPortal:Q54WE9 PRIDE:Q54WE9 EnsemblProtists:DDB0233747
GeneID:8622181 KEGG:ddi:DDB_G0279695 InParanoid:Q54WE9 OMA:HEMDGRQ
Uniprot:Q54WE9
Length = 84
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
N ++V + + + L+ HFSK G V+ ++V++ T+ S+GF FVT D E A+ +
Sbjct: 3 NRIFVARIPWSICKIALKTHFSKFGPVSDGYVVLDRITKRSKGFGFVTFDNAESAQNAVN 62
Query: 80 YLNQSVLEGRYI 91
+++ ++GR +
Sbjct: 63 SVHE--MDGRQL 72
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79
N ++VT L V + L+ HFS+ G + C++V++ T+ S+GF FV + E + I
Sbjct: 4 NKIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAIN 63
Query: 80 YLNQSVLEGR 89
N+ + GR
Sbjct: 64 SDNE--INGR 71
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV +S TE DL + FS G V S ++ +P T S+G +V M E+A+ I+ L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 82 NQSVLEGRYI 91
+ ++L R I
Sbjct: 65 DGALLRNRVI 74
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV +S TE DL + FS G V S ++ +P T S+G +V M E+A+ I+ L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 82 NQSVLEGRYI 91
+ ++L R I
Sbjct: 65 DGALLRNRVI 74
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
++V GLS L++ F GK+ +V++ + +SRGF FVT D +E A ++ +
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 82 NQSVLEGRYI 91
L+GR I
Sbjct: 98 QNKELDGRII 107
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 117 (46.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T ISRG F+ D +AE IK L
Sbjct: 167 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 226
Query: 82 N 82
N
Sbjct: 227 N 227
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 116 (45.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 82 N 82
N
Sbjct: 192 N 192
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 115 (45.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS TE L HF + GK+ C ++ +P + SRGF FVT V + + +
Sbjct: 15 LFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMTAR 74
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 75 PHKV-DGRVV 83
>UNIPROTKB|F1P8M3 [details] [associations]
symbol:F1P8M3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015267
Ensembl:ENSCAFT00000039191 Uniprot:F1P8M3
Length = 210
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 23 YVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82
+++GLS + T L HF + G + C + +P T++SRGF FV +E+ + +K
Sbjct: 17 FISGLSFKTTYETLRSHFEQWGMLIDCVAMRDPNTKLSRGFGFVMYATMEEVDAAMKARP 76
Query: 83 QSVLEGRYI 91
V +GR +
Sbjct: 77 HKV-DGRVV 84
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 116 (45.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 82 N 82
N
Sbjct: 194 N 194
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 116 (45.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 82 N 82
N
Sbjct: 194 N 194
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 116 (45.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 82 N 82
N
Sbjct: 199 N 199
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 116 (45.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 82 N 82
N
Sbjct: 199 N 199
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 116 (45.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 82 N 82
N
Sbjct: 187 N 187
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 116 (45.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 82 N 82
N
Sbjct: 187 N 187
>UNIPROTKB|F1M131 [details] [associations]
symbol:F1M131 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00196639
Ensembl:ENSRNOT00000018496 ArrayExpress:F1M131 Uniprot:F1M131
Length = 376
Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDA 74
+G+ ++V+GLS+ DL+ F K GKV S +V R+ ++ + VTM +
Sbjct: 290 SGSSTKNIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEV 349
Query: 75 ERCIKYLNQSVLEGRYI 91
RCI +L+++ L G+ I
Sbjct: 350 SRCIAHLHRTELHGQLI 366
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 82 N 82
N
Sbjct: 194 N 194
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 82 N 82
N
Sbjct: 194 N 194
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
Query: 82 N 82
N
Sbjct: 210 N 210
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 82 N 82
N
Sbjct: 198 N 198
>UNIPROTKB|F1S050 [details] [associations]
symbol:SLTM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003034 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037
PROSITE:PS50102 PROSITE:PS50800 SMART:SM00360 SMART:SM00513
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.10.720.30 GeneTree:ENSGT00690000102108 EMBL:CU582792
Ensembl:ENSSSCT00000005073 OMA:MESKDET Uniprot:F1S050
Length = 633
Score = 119 (46.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDA 74
+G+ ++V+GLS+ DL+ F K GKV S +V R+ ++ + VTM +
Sbjct: 379 SGSSTKNIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEV 438
Query: 75 ERCIKYLNQSVLEGRYI 91
RCI +L++S L G+ I
Sbjct: 439 SRCIAHLHRSELHGQLI 455
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 82 N 82
N
Sbjct: 199 N 199
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 82 N 82
N
Sbjct: 199 N 199
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
Query: 82 N 82
N
Sbjct: 216 N 216
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LYV+GL +T+++LE+ FS+ G++ + ++V+ T +SRG F+ D +AE IK L
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 82 N 82
N
Sbjct: 215 N 215
>FB|FBgn0028382 [details] [associations]
symbol:cyp33 "cyclophilin-33" species:7227 "Drosophila
melanogaster" [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA;NAS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0006457 "protein folding" evidence=IEA;NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0006457 GO:GO:0006911
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00690000101651
KO:K09564 EMBL:AF182826 EMBL:AY061421 RefSeq:NP_523773.1
UniGene:Dm.2854 ProteinModelPortal:Q9V3G3 SMR:Q9V3G3 DIP:DIP-21959N
IntAct:Q9V3G3 MINT:MINT-1643160 STRING:Q9V3G3 PaxDb:Q9V3G3
PRIDE:Q9V3G3 EnsemblMetazoa:FBtr0086945 GeneID:36984
KEGG:dme:Dmel_CG4886 UCSC:CG4886-RA CTD:36984 FlyBase:FBgn0028382
InParanoid:Q9V3G3 OMA:AFIEFEL OrthoDB:EOG4QV9TN PhylomeDB:Q9V3G3
GenomeRNAi:36984 NextBio:801358 Bgee:Q9V3G3 GermOnline:CG4886
Uniprot:Q9V3G3
Length = 300
Score = 114 (45.2 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 29/75 (38%), Positives = 39/75 (52%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
N T+YV GL+ VTER L F G +A + + ++ RGFAF+ + EDA
Sbjct: 3 NDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAA 62
Query: 77 CIKYLNQSVLEGRYI 91
I +N S L GR I
Sbjct: 63 AIDNMNDSELCGRTI 77
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 114 (45.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAE 75
L++ GL+ + +E L HF G + C +VV P+T+ SR F FVT VE+A+
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEAD 62
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 114 (45.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAE 75
L++ GL+ + +E L HF G + C +VV P+T+ SR F FVT VE+A+
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEAD 62
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GL +R TE+ L ++ + GK+ C ++ +P + SRGF FVT V + + +
Sbjct: 23 LFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAAR 82
Query: 82 NQSVLEGRYI 91
SV +G+ +
Sbjct: 83 PHSV-DGKVV 91
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 121 (47.7 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 30/71 (42%), Positives = 38/71 (53%)
Query: 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKY 80
T+ V+GL +T LE+ FS+ G V CFLV + RGFAFV ED R I+
Sbjct: 21 TVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIEL 80
Query: 81 LNQSVLEGRYI 91
N S + GR I
Sbjct: 81 KNGSTVGGRRI 91
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 114 (45.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAE 75
L++ GL+ + +E L HF G + C +VV P+T+ SR F FVT VE+A+
Sbjct: 14 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEAD 67
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 114 (45.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAE 75
L++ GL+ + +E L HF G + C +VV P+T+ SR F FVT VE+A+
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEAD 62
>WB|WBGene00001484 [details] [associations]
symbol:fox-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0018991
"oviposition" evidence=IMP] [GO:0016071 "mRNA metabolic process"
evidence=IMP] [GO:0007617 "mating behavior" evidence=IMP]
[GO:0007538 "primary sex determination" evidence=IGI] [GO:0042464
"dosage compensation by hypoactivation of X chromosome"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0018991
GO:GO:0016071 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007617 GO:GO:0034046 GO:GO:0042464 GO:GO:0007538
GO:GO:0008143 EMBL:U14946 EMBL:FO080846 PIR:T16825
RefSeq:NP_508446.1 ProteinModelPortal:Q10572 SMR:Q10572
IntAct:Q10572 MINT:MINT-1104789 STRING:Q10572 PaxDb:Q10572
EnsemblMetazoa:T07D1.4.1 EnsemblMetazoa:T07D1.4.2 GeneID:180549
KEGG:cel:CELE_T07D1.4 UCSC:T07D1.4.2 CTD:180549 WormBase:T07D1.4
eggNOG:NOG258617 GeneTree:ENSGT00390000013767 HOGENOM:HOG000016611
InParanoid:Q10572 KO:K14946 OMA:VNCATAR NextBio:909832
Uniprot:Q10572
Length = 415
Score = 116 (45.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 13 TETGNPG-NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGV 71
T +G G L+V+ + R + DL+ F K G V+ ++ R S+GF FVTM+
Sbjct: 145 TSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERP 202
Query: 72 EDAERCIKYLNQSVLEGRYI 91
+DAER + L+ S++EGR I
Sbjct: 203 QDAERARQELHGSMIEGRKI 222
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 114 (45.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ LS T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + +
Sbjct: 16 LFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
Q V GR +
Sbjct: 76 PQKV-NGRVV 84
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 114 (45.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAE 75
L++ GL+ + +E L HF G + C +VV P+T+ SR F FVT VE+A+
Sbjct: 14 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEAD 67
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 114 (45.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GLS T+ L HF + G + C ++ +P T+ SRGF FVT VE + +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNAR 75
Query: 82 NQSVLEGRYI 91
V +GR +
Sbjct: 76 PHKV-DGRVV 84
>TAIR|locus:2080772 [details] [associations]
symbol:EIF3G1 "eukaryotic translation initiation factor
3G1" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS;TAS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0005886 EMBL:CP002686
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003743
GO:GO:0005852 KO:K03248 OMA:SNLSEAM InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 IPI:IPI00938678
RefSeq:NP_001154607.1 UniGene:At.25153 ProteinModelPortal:F4J6A1
SMR:F4J6A1 PRIDE:F4J6A1 EnsemblPlants:AT3G11400.2 GeneID:820313
KEGG:ath:AT3G11400 Uniprot:F4J6A1
Length = 321
Score = 114 (45.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
N N++ VT LS E DL + F G V ++ ++ +T +SRGF FV EDA+R
Sbjct: 237 NDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQR 296
Query: 77 CIKYLN 82
I LN
Sbjct: 297 AINKLN 302
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 114 (45.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ G S T+ L HF + G + C ++ +P T+ SRGF FVT VE+ + + +
Sbjct: 16 LFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAM-HA 74
Query: 82 NQSVLEGRYI 91
++GR +
Sbjct: 75 RPHKVDGRVV 84
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 114 (45.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
GN +++ GLS +++DL ++ S+ G+V C + +P T SRGF FV ++ +
Sbjct: 50 GNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL 109
Query: 79 KYLNQSVLEGRYI 91
+ L + L+G+ I
Sbjct: 110 E-LKEHKLDGKLI 121
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 114 (45.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
GN +++ GLS +++DL ++ S+ G+V C + +P T SRGF FV ++ +
Sbjct: 50 GNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL 109
Query: 79 KYLNQSVLEGRYI 91
+ L + L+G+ I
Sbjct: 110 E-LKEHKLDGKLI 121
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 114 (45.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
LY++GL +T++D+E FS+ G++ + ++V+ T +SRG AF+ D +AE I
Sbjct: 108 LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 82 N 82
N
Sbjct: 168 N 168
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 112 (44.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
+++ GLS T++DL+ +FSK G+V C L ++P T SRGF FV E ++ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 59
Query: 82 NQSVLEGRYI 91
+ L G+ I
Sbjct: 60 KEHKLNGKVI 69
WARNING: HSPs involving 592 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 187 104 0.00091 102 3 11 22 0.42 30
29 0.50 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 842
No. of states in DFA: 502 (53 KB)
Total size of DFA: 101 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.70u 0.06s 9.76t Elapsed: 00:00:02
Total cpu time: 9.71u 0.06s 9.77t Elapsed: 00:00:02
Start: Thu May 9 19:12:30 2013 End: Thu May 9 19:12:32 2013
WARNINGS ISSUED: 2