BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029810
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 12/145 (8%)
Query: 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76
N GN L+V+G+++R+ E +L++ FSK G V ++ EP T+ SRGF F++ VE+A
Sbjct: 98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATS 157
Query: 77 CIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGL---KSSRDIGRGD------RGRYR 127
I LN GR + V++++R RP +PTPG Y+G ++SRD + R YR
Sbjct: 158 AIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNNKDGGYRRNNYR 217
Query: 128 SGRDDYGYRRSPRRSPYRGGRDYSP 152
RD YR S R P R R++SP
Sbjct: 218 D-RDSNRYRNSYR--PSRPQREHSP 239
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 5 SRSRSRGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFA 64
+R R G +P L V GLS TERDL + FSK G +A +V + ++R SRGFA
Sbjct: 103 TRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFA 162
Query: 65 FVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLG---LKSSRDIGRG 121
FV + V+DA+ + N L+GR I V+ S KRP TPTPG Y+G SSR
Sbjct: 163 FVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYY 222
Query: 122 DRGRYRSGRDDYGY 135
DRG Y G DD Y
Sbjct: 223 DRG-YDRGYDDRDY 235
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 5 SRSRSRGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFA 64
+R R G +P L V GLS TERDL + FSK G +A +V + ++R SRGFA
Sbjct: 103 TRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFA 162
Query: 65 FVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLG---LKSSRDIGRG 121
FV + V+DA+ + N L+GR I V+ S KRP TPTPG Y+G SSR
Sbjct: 163 FVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYY 222
Query: 122 DRGRYRSGRDDYGY 135
DRG Y G DD Y
Sbjct: 223 DRG-YDRGYDDRDY 235
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 5 SRSRSRGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFA 64
+R R G +P L V GLS TERDL + FSK G +A +V + ++R SRGFA
Sbjct: 103 TRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFA 162
Query: 65 FVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLG---LKSSRDIGRG 121
FV + V+DA+ + N L+GR I V+ S KRP TPTPG Y+G SSR
Sbjct: 163 FVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYY 222
Query: 122 DRGRYRSGRDDYGY 135
DRG Y G DD Y
Sbjct: 223 DRG-YDRGYDDRDY 235
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Query: 5 SRSRSRGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFA 64
+R R G +P L V GLS TERDL + FSK G +A +V + ++R SRGFA
Sbjct: 103 TRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFA 162
Query: 65 FVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLG---LKSSRDIGRG 121
FV + V+DA+ + N L+GR I V+ S KRP TPTPG Y+G SSR
Sbjct: 163 FVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYY 222
Query: 122 DRGRYRSGRDDYGY 135
DRG Y G DD Y
Sbjct: 223 DRG-YDRGYDDRDY 235
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%)
Query: 5 SRSRSRGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFA 64
+R R G +P L V GLS TERDL + FS+ G ++ +V + RT SRGFA
Sbjct: 102 NRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFA 161
Query: 65 FVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLG 111
FV + ++D++ ++ N L+GR I V+ S KR TPTPG Y+G
Sbjct: 162 FVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 208
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 62/107 (57%)
Query: 5 SRSRSRGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFA 64
+R R G +P L V GLS TERDL + FS+ G ++ +V + RT SRGFA
Sbjct: 104 NRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFA 163
Query: 65 FVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLG 111
FV + ++D++ ++ N L+GR I V+ S KR TPTPG Y+G
Sbjct: 164 FVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 210
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 53/99 (53%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
T +P N L V GL+ + ERDL+ FS+ GK+ L+++ +T S+ F FV + E
Sbjct: 106 ANTASPSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKE 165
Query: 73 DAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLG 111
DA R + L G+ I + S K+P PTPG Y G
Sbjct: 166 DAVRAKEECQDLQLHGKSIRTDFSATKKPHEPTPGKYFG 204
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+T E+ LE F K G+V L+ + T SRGFAFVT +
Sbjct: 2 VEADRPGK-LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRRKRPRTPT 105
DA+ + LN L+G+ I VE++ + TP+
Sbjct: 61 DAKDAARELNGKALDGKPIKVEQATKPSFSTPS 93
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+T +E+ LE +FSK G+++ L+ + T SRGFAFVT +
Sbjct: 2 AEADRPGK-LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPG 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRRKR 100
DA+ + +N L+G+ I VE++ + +
Sbjct: 61 DAKDAAREMNGKPLDGKPIKVEQATKPQ 88
>sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus
musculus GN=Rbmy1a1 PE=1 SV=2
Length = 380
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
ET PG +++ GL+ + ++ L++ F + G VA L+ + T+ SRGFAF+T +
Sbjct: 2 AETNQPG-KIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR-------KRPRTPTPGHYLGLKSSRDIGRGDRGR 125
DA+ +K +N +L+G+ I V+++RR + R P+ G GRG R R
Sbjct: 61 DAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSR 120
Query: 126 YRSG 129
RSG
Sbjct: 121 ARSG 124
>sp|Q15424|SAFB1_HUMAN Scaffold attachment factor B1 OS=Homo sapiens GN=SAFB PE=1 SV=4
Length = 915
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FSK GKV +V R+ +R + FVTM E+A +CI
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 79 KYLNQSVLEGRYITVERSRRK 99
+L+++ L G+ I+VE+++ +
Sbjct: 465 NHLHKTELHGKMISVEKAKNE 485
>sp|Q14151|SAFB2_HUMAN Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1
Length = 953
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 10 RGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD 69
+GR +G+ G L+V+GLS+ DL+ FSK GKV +V R+ +R + FVTM
Sbjct: 398 KGRVGSGS-GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMS 456
Query: 70 GVEDAERCIKYLNQSVLEGRYITVERSRRK 99
++A +CI +L+++ L GR I+VE+++ +
Sbjct: 457 TSDEATKCISHLHRTELHGRMISVEKAKNE 486
>sp|Q5R452|SAFB1_PONAB Scaffold attachment factor B1 OS=Pongo abelii GN=SAFB PE=2 SV=1
Length = 914
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FSK GKV +V R+ +R + FVTM E+A +CI
Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464
Query: 79 KYLNQSVLEGRYITVERSRRK 99
+L+++ L G+ I+VE+++ +
Sbjct: 465 NHLHKTELHGKMISVEKAKNE 485
>sp|Q80YR5|SAFB2_MOUSE Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2
Length = 991
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G L+V+GLS+ DL+ FSK GKV +V R+ +R + FVTM ++A +CI
Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509
Query: 79 KYLNQSVLEGRYITVERSRRK 99
+L+++ L GR I+VE+++ +
Sbjct: 510 SHLHRTELHGRMISVEKAKNE 530
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT +
Sbjct: 2 VEADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ + +N L+G+ I VE++ +
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT +
Sbjct: 2 VEADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ + +N L+G+ I VE++ +
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT +
Sbjct: 2 VEADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ + +N L+G+ I VE++ +
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT +
Sbjct: 2 VEADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ + +N L+G+ I VE++ +
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
ET PG +++ GL+ + ++ L++ F + G VA L+ + T+ SRGFAF+T
Sbjct: 2 AETDQPGK-IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR-------KRPRTPTPGHYLGLKSSRDIGRGDRGR 125
DA+ +K +N +L+G+ I V+++RR + R P+ G GRG R R
Sbjct: 61 DAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSR 120
Query: 126 YRSG 129
RSG
Sbjct: 121 ARSG 124
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes
GN=RBMX PE=2 SV=1
Length = 391
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT +
Sbjct: 2 VEADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ + +N L+G+ I VE++ +
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT +
Sbjct: 2 VEADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ + +N L+G+ I VE++ +
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GL+ + E+ L+ F K G + FL+ + +T SRGFAFVT + DA+ + +
Sbjct: 10 LFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 82 NQSVLEGRYITVERSRR-----KRPRTPTPG 107
N L+G+ I V ++ + R PTPG
Sbjct: 70 NGKYLDGKAIMVAQTIKPAFESSRWVPPTPG 100
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT +
Sbjct: 2 VEADRPGK-LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ + +N L+G+ I VE++ +
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT +
Sbjct: 2 VEADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ + +N L+G+ I VE++ +
Sbjct: 61 DAKDVARDMNGKSLDGKAIKVEQATK 86
>sp|Q8N7X1|RMXL3_HUMAN RNA-binding motif protein, X-linked-like-3 OS=Homo sapiens
GN=RBMXL3 PE=2 SV=2
Length = 1067
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GL+ + E+ L+ F K G + FL+ + +T SRGFAFVT + DA+ + +
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 82 NQSVLEGRYITVERS-----RRKRPRTPTPG 107
N L+G+ I V ++ + R PTPG
Sbjct: 70 NGKYLDGKAIMVAQTIKPAFKSSRWVPPTPG 100
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+T E+ LE F K G++ L+ + T SRGFAFVT +
Sbjct: 2 VEADRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ + +N L+G+ I VE++ +
Sbjct: 61 DAKDVARDMNGKSLDGKAIKVEQATK 86
>sp|O88453|SAFB1_RAT Scaffold attachment factor B1 OS=Rattus norvegicus GN=Safb PE=1
SV=2
Length = 931
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FS+ GKV +V R+ +R + FVTM E+A +CI
Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486
Query: 79 KYLNQSVLEGRYITVERSR 97
+L+++ L G+ I+VE+++
Sbjct: 487 NHLHKTELHGKMISVEKAK 505
>sp|D3YXK2|SAFB1_MOUSE Scaffold attachment factor B1 OS=Mus musculus GN=Safb PE=1 SV=2
Length = 937
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78
G +V+GLS+ DL+ FS+ GKV +V R+ +R + FVTM E+A +CI
Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486
Query: 79 KYLNQSVLEGRYITVERSR 97
+L+++ L G+ I+VE+++
Sbjct: 487 SHLHKTELHGKMISVEKAK 505
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E +PG L++ GL+ E+ L+ F K G ++ L+ + RT SRGFAF+T +
Sbjct: 2 VEADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ K +N + L G+ I VE++++
Sbjct: 60 DAKNAAKDMNGTSLHGKAIKVEQAKK 85
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B
OS=Homo sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E +PG L++ GL+ E+ L+ F K G ++ L+ + RT SRGFAF+T +
Sbjct: 2 VEADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ K +N L G+ I VE++++
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKK 85
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D
OS=Homo sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E +PG L++ GL+ E+ L+ F K G ++ L+ + RT SRGFAF+T +
Sbjct: 2 VEADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ K +N L G+ I VE++++
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKK 85
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1
OS=Homo sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E +PG L++ GL+ E+ L+ F K G ++ L+ + RT SRGFAF+T +
Sbjct: 2 VEADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ K +N L G+ I VE++++
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKK 85
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E
OS=Homo sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E +PG L++ GL+ E+ L+ F K G ++ L+ + RT SRGFAF+T +
Sbjct: 2 VEADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ K +N L G+ I VE++++
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKK 85
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYITVERS 96
N ++GR I V+++
Sbjct: 68 NGKSVDGRQIRVDQA 82
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYITVERS 96
N ++GR I V+++
Sbjct: 68 NGKSVDGRQIRVDQA 82
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C
OS=Homo sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E +PG L++ GL+ E+ L+ F K G ++ L+ + RT SRGFAF+T +
Sbjct: 2 VEADHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ K +N L G+ I VE++++
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAQK 85
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYITVERS 96
N ++GR I V+++
Sbjct: 68 NGKSVDGRQIRVDQA 82
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYITVERS 96
N ++GR I V+++
Sbjct: 68 NGKSVDGRQIRVDQA 82
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE+ FSK G+++ +V + T+ SRGF FVT + ++DA+ + +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 82 NQSVLEGRYITVERS 96
N ++GR I V+++
Sbjct: 68 NGKSVDGRQIRVDQA 82
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX
PE=2 SV=1
Length = 396
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+ E+ LE F K G+++ L+ + T SRGFAF+T +
Sbjct: 2 VEADRPGK-LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ ++ +N L+G+ I V ++ +
Sbjct: 61 DAKAAVRDMNGKSLDGKAIKVAQATK 86
>sp|O02008|TRA2_DROVI Transformer-2 sex-determining protein OS=Drosophila virilis GN=tra2
PE=3 SV=1
Length = 272
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 5 SRSRSRGRTETGNPGNT--LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRG 62
SR R R R +P + + V GL+T T++ + + F+K G + +V++ T SRG
Sbjct: 88 SRDRQRMRQARDHPQASRCIGVFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRG 147
Query: 63 FAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSSRDIGRGD 122
F F+ + + DA ++GR I V+ S +R TPTPG Y+G + SR +GR
Sbjct: 148 FCFIYFENLGDARVAKDACTGMEVDGRRIRVDYSITQRAHTPTPGVYMG-RPSRPLGRRS 206
Query: 123 RGR 125
R R
Sbjct: 207 RER 209
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GL+ TE LE+ FSK G+VA +V + ++ SRGF FVT + EDA+ + +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 82 NQSVLEGRYITVERS 96
N ++GR I V+++
Sbjct: 68 NGKSVDGRQIRVDQA 82
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+ E+ LE F K G++ L+ + T SRGFAFVT +
Sbjct: 2 VEADRPGK-LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
DA+ + +N L+G+ I V ++ +
Sbjct: 61 DAKAAARDMNGKSLDGKAIKVAQATK 86
>sp|Q498L2|SLTM_XENLA SAFB-like transcription modulator OS=Xenopus laevis GN=sltm PE=2
SV=1
Length = 998
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKY 80
L+V+GLS+ DL+ F K GKV S +V R+ ++ + VTM D RCI +
Sbjct: 346 NLWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSADVARCISH 405
Query: 81 LNQSVLEGRYITVER 95
L+++ L G+ I+VE+
Sbjct: 406 LHRTELHGQQISVEK 420
>sp|P19018|TRA2_DROME Transformer-2 sex-determining protein OS=Drosophila melanogaster
GN=tra2 PE=1 SV=1
Length = 264
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%)
Query: 4 RSRSRSRGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGF 63
R R R E + V GL+T ++ + + F+K G + +V++ +T+ SRGF
Sbjct: 81 RDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGF 140
Query: 64 AFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLG 111
F+ + + DA + ++GR I V+ S +R TPTPG YLG
Sbjct: 141 CFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLG 188
>sp|Q4R813|RMXL2_MACFA RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis
GN=RBMXL2 PE=2 SV=1
Length = 394
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVE 72
E PG L++ GL+ E+ LE F K G++ L+ + T SRGFAFVT +
Sbjct: 2 VEADRPGK-LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 73 DAERCIKYLNQSVLEGRYITVERSRR 98
+A+ + +N L+G+ I V ++ +
Sbjct: 61 NAKAAARDMNGKSLDGKAIKVAQATK 86
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L+V GLS E+ LE FSK G++ +V + T+ SRGF FVT + EDA+ + +
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 82 NQSVLEGRYITVERS 96
N ++GR I V+++
Sbjct: 68 NGKTVDGRQIRVDQA 82
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GL+ E LE+ F+K G+++ +V + T+ SRGF FVT + V+DA+ + +
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 82 NQSVLEGRYITVERS 96
N ++GR I V+++
Sbjct: 67 NGKSVDGRQIRVDQA 81
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81
L++ GL+ E LE+ FSK G+++ +V + T+ SRGF FVT + +DA+ + +
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 82 NQSVLEGRYITVERS 96
N ++GR I V+++
Sbjct: 67 NGKAVDGRQIRVDQA 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,972,351
Number of Sequences: 539616
Number of extensions: 3561198
Number of successful extensions: 12077
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 419
Number of HSP's that attempted gapping in prelim test: 9926
Number of HSP's gapped (non-prelim): 2169
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)