Query 029810
Match_columns 187
No_of_seqs 284 out of 2665
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:01:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0107 Alternative splicing f 99.9 7.3E-24 1.6E-28 151.7 16.3 81 17-102 8-88 (195)
2 PLN03134 glycine-rich RNA-bind 99.9 5.5E-23 1.2E-27 147.7 15.2 87 15-101 30-116 (144)
3 KOG0113 U1 small nuclear ribon 99.8 5.9E-20 1.3E-24 141.5 15.6 100 12-111 94-193 (335)
4 KOG4207 Predicted splicing fac 99.8 9.3E-20 2E-24 134.0 13.4 89 13-101 7-95 (256)
5 KOG0121 Nuclear cap-binding pr 99.8 2.7E-20 5.7E-25 127.1 8.1 98 15-125 32-129 (153)
6 TIGR01659 sex-lethal sex-letha 99.8 6.9E-19 1.5E-23 143.0 14.7 84 18-101 192-277 (346)
7 TIGR01659 sex-lethal sex-letha 99.8 3.1E-19 6.8E-24 145.0 11.8 85 14-98 102-186 (346)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 6.6E-19 1.4E-23 143.8 12.4 84 18-101 268-351 (352)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.7E-18 3.6E-23 141.5 11.0 83 18-100 2-84 (352)
10 PF00076 RRM_1: RNA recognitio 99.8 2.8E-18 6.2E-23 108.0 9.5 70 22-92 1-70 (70)
11 KOG0122 Translation initiation 99.8 3E-18 6.4E-23 128.9 9.9 84 16-99 186-269 (270)
12 KOG0130 RNA-binding protein RB 99.7 6.4E-18 1.4E-22 116.5 7.4 84 16-99 69-152 (170)
13 KOG0149 Predicted RNA-binding 99.7 6.2E-18 1.3E-22 126.6 7.3 80 18-98 11-90 (247)
14 KOG0105 Alternative splicing f 99.7 4.3E-17 9.2E-22 118.2 9.7 81 17-100 4-84 (241)
15 PF14259 RRM_6: RNA recognitio 99.7 1.2E-16 2.5E-21 101.0 9.6 70 22-92 1-70 (70)
16 TIGR01648 hnRNP-R-Q heterogene 99.7 5.9E-16 1.3E-20 132.4 15.4 77 17-101 231-309 (578)
17 TIGR01645 half-pint poly-U bin 99.7 2.9E-16 6.4E-21 134.6 12.4 85 17-101 202-286 (612)
18 PLN03120 nucleic acid binding 99.7 2.7E-16 5.8E-21 121.2 10.3 76 19-98 4-79 (260)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.7 4.5E-16 9.8E-21 133.0 12.4 83 17-99 293-375 (509)
20 TIGR01645 half-pint poly-U bin 99.7 3E-16 6.5E-21 134.5 9.6 83 15-97 103-185 (612)
21 KOG0125 Ataxin 2-binding prote 99.7 3.4E-16 7.4E-21 122.2 8.8 86 12-99 89-174 (376)
22 TIGR01622 SF-CC1 splicing fact 99.7 5.6E-16 1.2E-20 130.8 10.9 81 18-98 185-265 (457)
23 TIGR01622 SF-CC1 splicing fact 99.7 8.6E-16 1.9E-20 129.7 11.1 83 16-99 86-168 (457)
24 TIGR01628 PABP-1234 polyadenyl 99.7 7.3E-16 1.6E-20 133.3 10.8 79 20-98 1-79 (562)
25 PLN03213 repressor of silencin 99.7 6.5E-16 1.4E-20 126.6 9.7 81 14-98 5-87 (759)
26 KOG0111 Cyclophilin-type pepti 99.6 2E-16 4.3E-21 117.6 5.7 89 14-102 5-93 (298)
27 smart00362 RRM_2 RNA recogniti 99.6 1.6E-15 3.5E-20 94.8 9.2 72 21-94 1-72 (72)
28 PLN03121 nucleic acid binding 99.6 1.5E-15 3.3E-20 115.4 10.4 77 17-97 3-79 (243)
29 TIGR01648 hnRNP-R-Q heterogene 99.6 8.8E-16 1.9E-20 131.3 9.8 78 16-94 55-133 (578)
30 KOG0131 Splicing factor 3b, su 99.6 5.1E-16 1.1E-20 112.2 6.9 84 14-97 4-87 (203)
31 TIGR01628 PABP-1234 polyadenyl 99.6 1.8E-15 3.9E-20 130.9 11.0 84 16-100 282-365 (562)
32 KOG0126 Predicted RNA-binding 99.6 3.1E-17 6.7E-22 118.5 0.0 80 18-97 34-113 (219)
33 KOG0148 Apoptosis-promoting RN 99.6 1.1E-15 2.4E-20 116.7 8.4 88 13-100 56-143 (321)
34 KOG0148 Apoptosis-promoting RN 99.6 3E-15 6.4E-20 114.4 10.2 82 14-101 159-240 (321)
35 KOG0114 Predicted RNA-binding 99.6 7.4E-15 1.6E-19 97.0 10.0 81 15-98 14-94 (124)
36 smart00360 RRM RNA recognition 99.6 4.1E-15 8.9E-20 92.6 8.5 71 24-94 1-71 (71)
37 KOG0117 Heterogeneous nuclear 99.6 4.6E-15 1E-19 120.0 9.9 83 15-97 79-162 (506)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.2E-14 2.5E-19 123.6 11.9 80 16-100 272-352 (481)
39 cd00590 RRM RRM (RNA recogniti 99.6 2.4E-14 5.1E-19 90.0 9.9 74 21-95 1-74 (74)
40 KOG0145 RNA-binding protein EL 99.6 1.3E-14 2.7E-19 110.5 9.8 85 15-99 37-121 (360)
41 KOG0146 RNA-binding protein ET 99.6 2.6E-15 5.6E-20 114.6 5.9 89 13-101 279-367 (371)
42 COG0724 RNA-binding proteins ( 99.6 1.4E-14 2.9E-19 112.9 10.0 80 19-98 115-194 (306)
43 KOG0145 RNA-binding protein EL 99.6 2.4E-14 5.2E-19 109.0 10.6 83 17-99 276-358 (360)
44 KOG0415 Predicted peptidyl pro 99.6 4.2E-15 9E-20 117.4 6.6 85 14-98 234-318 (479)
45 KOG0117 Heterogeneous nuclear 99.6 5.8E-15 1.2E-19 119.5 7.5 77 17-101 257-333 (506)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 2E-14 4.4E-19 122.2 10.3 76 18-99 1-78 (481)
47 KOG0109 RNA-binding protein LA 99.5 7.4E-15 1.6E-19 113.2 5.8 72 20-99 3-74 (346)
48 KOG0108 mRNA cleavage and poly 99.5 1.7E-14 3.8E-19 119.3 8.4 82 20-101 19-100 (435)
49 KOG0144 RNA-binding protein CU 99.5 2.1E-14 4.5E-19 115.9 8.0 89 14-102 29-120 (510)
50 KOG0109 RNA-binding protein LA 99.5 1.5E-14 3.1E-19 111.6 6.5 100 16-128 75-174 (346)
51 KOG0144 RNA-binding protein CU 99.5 1.3E-14 2.8E-19 117.1 5.7 86 17-103 122-210 (510)
52 KOG0127 Nucleolar protein fibr 99.5 9.8E-14 2.1E-18 114.9 8.8 86 14-99 287-378 (678)
53 PF13893 RRM_5: RNA recognitio 99.5 2.1E-13 4.6E-18 82.3 7.9 56 36-96 1-56 (56)
54 KOG0127 Nucleolar protein fibr 99.5 1.2E-13 2.7E-18 114.4 8.8 82 18-100 116-197 (678)
55 smart00361 RRM_1 RNA recogniti 99.5 2.4E-13 5.2E-18 85.9 8.0 61 33-93 2-69 (70)
56 KOG0116 RasGAP SH3 binding pro 99.5 8.9E-13 1.9E-17 108.7 12.7 88 12-100 281-368 (419)
57 KOG4212 RNA-binding protein hn 99.4 2.1E-12 4.6E-17 104.7 11.9 79 19-98 44-123 (608)
58 KOG0124 Polypyrimidine tract-b 99.4 2.5E-13 5.3E-18 107.9 4.7 77 19-95 113-189 (544)
59 KOG0147 Transcriptional coacti 99.4 4.3E-13 9.4E-18 111.2 6.3 80 20-99 279-358 (549)
60 KOG0131 Splicing factor 3b, su 99.4 1.3E-12 2.7E-17 94.8 7.2 90 11-100 88-178 (203)
61 TIGR01642 U2AF_lg U2 snRNP aux 99.4 2.2E-12 4.8E-17 110.4 8.4 75 16-97 172-258 (509)
62 KOG4206 Spliceosomal protein s 99.3 8.7E-12 1.9E-16 93.4 8.4 83 15-100 5-91 (221)
63 KOG0123 Polyadenylate-binding 99.3 1.1E-11 2.5E-16 101.5 8.8 79 22-103 79-157 (369)
64 KOG4208 Nucleolar RNA-binding 99.3 1.5E-11 3.3E-16 90.8 8.5 87 13-99 43-130 (214)
65 KOG0132 RNA polymerase II C-te 99.3 8.4E-12 1.8E-16 107.2 8.1 79 19-103 421-499 (894)
66 KOG4205 RNA-binding protein mu 99.3 8.9E-12 1.9E-16 99.3 7.3 87 18-105 96-182 (311)
67 KOG0153 Predicted RNA-binding 99.3 1.7E-11 3.7E-16 96.8 8.2 79 14-98 223-302 (377)
68 KOG4661 Hsp27-ERE-TATA-binding 99.3 2.3E-11 5E-16 101.7 8.6 84 17-100 403-486 (940)
69 KOG4205 RNA-binding protein mu 99.2 1E-11 2.2E-16 99.0 5.6 83 18-101 5-87 (311)
70 KOG0124 Polypyrimidine tract-b 99.2 3.8E-11 8.3E-16 95.6 7.3 83 17-99 208-290 (544)
71 KOG0110 RNA-binding protein (R 99.2 5.1E-11 1.1E-15 101.6 8.0 78 20-97 516-596 (725)
72 PF04059 RRM_2: RNA recognitio 99.2 2.2E-10 4.9E-15 76.2 9.1 80 20-99 2-87 (97)
73 KOG0533 RRM motif-containing p 99.2 1.3E-10 2.8E-15 89.4 8.9 83 16-99 80-162 (243)
74 KOG0123 Polyadenylate-binding 99.2 9.9E-11 2.2E-15 96.0 8.4 74 20-99 2-75 (369)
75 KOG0146 RNA-binding protein ET 99.2 3.9E-11 8.4E-16 92.0 5.5 84 18-102 18-104 (371)
76 KOG0106 Alternative splicing f 99.2 4.9E-11 1.1E-15 90.0 5.1 72 20-99 2-73 (216)
77 KOG4212 RNA-binding protein hn 99.1 1.2E-10 2.5E-15 94.8 7.1 76 16-96 533-608 (608)
78 KOG1457 RNA binding protein (c 99.1 5.7E-10 1.2E-14 83.6 10.0 87 16-102 31-121 (284)
79 KOG0110 RNA-binding protein (R 99.1 6.9E-11 1.5E-15 100.8 5.1 85 15-99 609-693 (725)
80 KOG1548 Transcription elongati 99.1 5.3E-10 1.1E-14 88.5 8.6 83 16-99 131-221 (382)
81 KOG4209 Splicing factor RNPS1, 99.0 4.4E-10 9.6E-15 86.5 6.2 84 15-99 97-180 (231)
82 KOG4454 RNA binding protein (R 99.0 1.3E-10 2.8E-15 86.8 2.1 81 15-97 5-85 (267)
83 KOG1995 Conserved Zn-finger pr 98.9 2.8E-09 6.2E-14 84.8 7.7 85 16-100 63-155 (351)
84 KOG0151 Predicted splicing reg 98.9 4.2E-09 9.2E-14 90.1 7.3 83 16-98 171-256 (877)
85 KOG4660 Protein Mei2, essentia 98.9 1.7E-09 3.6E-14 90.3 4.2 72 16-92 72-143 (549)
86 KOG4211 Splicing factor hnRNP- 98.9 1.1E-08 2.3E-13 84.5 8.5 81 15-99 6-86 (510)
87 KOG0106 Alternative splicing f 98.8 9.6E-09 2.1E-13 77.6 6.5 74 12-93 92-165 (216)
88 KOG1190 Polypyrimidine tract-b 98.8 2.9E-08 6.3E-13 80.3 9.3 81 19-104 297-378 (492)
89 KOG0226 RNA-binding proteins [ 98.8 1.1E-08 2.4E-13 78.0 4.9 85 14-98 185-269 (290)
90 KOG0120 Splicing factor U2AF, 98.7 1.3E-08 2.8E-13 85.5 5.0 90 12-101 282-371 (500)
91 PF08777 RRM_3: RNA binding mo 98.7 4.7E-08 1E-12 66.4 6.2 72 19-96 1-77 (105)
92 PF11608 Limkain-b1: Limkain b 98.7 1.9E-07 4.1E-12 59.8 7.6 69 20-98 3-76 (90)
93 KOG4211 Splicing factor hnRNP- 98.7 7.7E-08 1.7E-12 79.5 7.4 80 17-97 101-180 (510)
94 KOG4849 mRNA cleavage factor I 98.6 1.1E-07 2.4E-12 75.7 7.0 75 20-94 81-157 (498)
95 KOG1457 RNA binding protein (c 98.6 4.5E-08 9.7E-13 73.6 4.3 68 16-87 207-274 (284)
96 KOG4206 Spliceosomal protein s 98.6 3.8E-07 8.2E-12 68.7 7.9 78 15-97 142-220 (221)
97 KOG0147 Transcriptional coacti 98.4 9E-08 2E-12 80.0 2.5 85 16-101 176-260 (549)
98 KOG1456 Heterogeneous nuclear 98.4 1.9E-06 4.1E-11 69.4 9.4 82 14-100 282-364 (494)
99 KOG4210 Nuclear localization s 98.4 3.6E-07 7.8E-12 72.7 4.7 83 18-101 183-266 (285)
100 KOG2314 Translation initiation 98.3 2.9E-06 6.2E-11 71.6 8.4 80 17-97 56-142 (698)
101 KOG3152 TBP-binding protein, a 98.2 8E-07 1.7E-11 68.1 3.0 73 18-90 73-157 (278)
102 COG5175 MOT2 Transcriptional r 98.2 3.7E-06 7.9E-11 67.0 6.7 80 19-98 114-202 (480)
103 KOG0105 Alternative splicing f 98.2 2.1E-05 4.5E-10 57.8 9.4 65 16-87 112-176 (241)
104 KOG4307 RNA binding protein RB 98.2 5.9E-06 1.3E-10 71.3 7.6 76 20-95 868-943 (944)
105 KOG1456 Heterogeneous nuclear 98.2 1.3E-05 2.9E-10 64.6 9.0 83 13-100 114-200 (494)
106 KOG1365 RNA-binding protein Fu 98.1 3.7E-06 8E-11 67.9 5.2 80 17-97 278-360 (508)
107 KOG0129 Predicted RNA-binding 98.1 9.3E-06 2E-10 67.9 7.4 69 12-80 363-432 (520)
108 PF14605 Nup35_RRM_2: Nup53/35 98.1 8.5E-06 1.8E-10 48.3 5.0 52 20-78 2-53 (53)
109 KOG1855 Predicted RNA-binding 98.1 6.9E-06 1.5E-10 67.2 5.6 75 10-84 222-309 (484)
110 KOG1190 Polypyrimidine tract-b 98.1 1.3E-05 2.7E-10 65.4 6.7 78 17-98 412-490 (492)
111 KOG0120 Splicing factor U2AF, 98.1 1.4E-05 3.1E-10 67.4 7.2 64 34-97 424-490 (500)
112 PF05172 Nup35_RRM: Nup53/35/4 98.0 2.7E-05 5.9E-10 52.2 7.0 78 18-97 5-90 (100)
113 PF08952 DUF1866: Domain of un 98.0 4.1E-05 8.8E-10 54.5 7.7 77 15-100 23-108 (146)
114 KOG1548 Transcription elongati 97.9 4.1E-05 8.9E-10 61.2 7.6 79 17-99 263-352 (382)
115 KOG2202 U2 snRNP splicing fact 97.9 4.5E-06 9.8E-11 64.1 1.9 64 34-98 83-147 (260)
116 KOG0129 Predicted RNA-binding 97.8 6E-05 1.3E-09 63.1 7.3 67 15-82 255-327 (520)
117 KOG2416 Acinus (induces apopto 97.8 2.1E-05 4.4E-10 66.9 4.0 77 16-98 441-521 (718)
118 KOG0112 Large RNA-binding prot 97.7 5.5E-05 1.2E-09 67.1 4.7 78 15-98 451-530 (975)
119 PF10309 DUF2414: Protein of u 97.6 0.0004 8.7E-09 42.2 6.7 55 19-81 5-62 (62)
120 PF08675 RNA_bind: RNA binding 97.6 0.00043 9.2E-09 44.5 7.0 57 18-83 8-64 (87)
121 KOG1996 mRNA splicing factor [ 97.6 0.00028 6.1E-09 55.4 6.6 65 33-97 300-365 (378)
122 KOG4307 RNA binding protein RB 97.4 0.00012 2.5E-09 63.6 3.2 83 14-96 429-511 (944)
123 KOG4676 Splicing factor, argin 97.4 0.00022 4.7E-09 58.1 4.5 74 20-94 8-84 (479)
124 KOG2193 IGF-II mRNA-binding pr 97.4 0.00013 2.8E-09 59.9 3.3 76 20-101 2-78 (584)
125 KOG0128 RNA-binding protein SA 97.4 0.00014 3E-09 64.3 3.4 80 19-99 736-815 (881)
126 KOG1365 RNA-binding protein Fu 97.3 0.00094 2E-08 54.4 7.3 75 20-96 162-240 (508)
127 KOG4660 Protein Mei2, essentia 97.3 0.00043 9.3E-09 58.6 5.5 57 43-99 413-473 (549)
128 KOG0128 RNA-binding protein SA 97.2 2.1E-05 4.5E-10 69.3 -3.8 68 20-87 668-735 (881)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 97.1 0.00093 2E-08 49.6 5.1 84 16-99 4-98 (176)
130 PF15023 DUF4523: Protein of u 97.0 0.0054 1.2E-07 43.5 7.8 77 13-97 80-160 (166)
131 KOG0115 RNA-binding protein p5 97.0 0.001 2.2E-08 51.4 4.2 75 20-95 32-110 (275)
132 PF03880 DbpA: DbpA RNA bindin 97.0 0.0056 1.2E-07 38.7 7.0 67 21-96 2-74 (74)
133 KOG2591 c-Mpl binding protein, 97.0 0.0013 2.9E-08 55.8 5.2 71 17-94 173-247 (684)
134 KOG0112 Large RNA-binding prot 96.9 0.00021 4.5E-09 63.6 -0.2 83 13-96 366-448 (975)
135 PF07576 BRAP2: BRCA1-associat 96.9 0.02 4.4E-07 39.1 9.6 70 17-88 10-81 (110)
136 KOG2068 MOT2 transcription fac 96.9 0.0004 8.7E-09 55.5 1.0 81 19-99 77-163 (327)
137 PRK11634 ATP-dependent RNA hel 96.8 0.049 1.1E-06 48.3 13.8 70 20-98 487-562 (629)
138 KOG2135 Proteins containing th 96.4 0.0019 4.2E-08 53.9 1.9 73 19-98 372-445 (526)
139 KOG4285 Mitotic phosphoprotein 96.4 0.018 4E-07 45.6 7.2 69 19-95 197-266 (350)
140 PF04847 Calcipressin: Calcipr 96.1 0.019 4.1E-07 42.9 5.8 61 32-98 8-70 (184)
141 KOG4676 Splicing factor, argin 96.0 0.001 2.3E-08 54.2 -1.4 73 20-97 152-224 (479)
142 KOG2253 U1 snRNP complex, subu 95.9 0.0054 1.2E-07 53.2 2.5 73 14-95 35-107 (668)
143 PF11767 SET_assoc: Histone ly 95.8 0.06 1.3E-06 33.2 6.3 55 30-93 11-65 (66)
144 KOG4574 RNA-binding protein (c 95.8 0.0092 2E-07 53.2 3.5 77 23-105 302-380 (1007)
145 KOG0804 Cytoplasmic Zn-finger 95.7 0.053 1.2E-06 45.3 7.4 68 19-88 74-142 (493)
146 KOG4210 Nuclear localization s 95.4 0.01 2.2E-07 47.4 2.3 80 18-97 87-166 (285)
147 KOG2318 Uncharacterized conser 94.4 0.26 5.6E-06 42.6 7.9 81 16-96 171-305 (650)
148 KOG2193 IGF-II mRNA-binding pr 93.9 0.0037 8.1E-08 51.6 -3.7 77 19-99 80-157 (584)
149 smart00596 PRE_C2HC PRE_C2HC d 93.3 0.19 4.2E-06 31.1 4.1 61 34-97 2-63 (69)
150 PF07530 PRE_C2HC: Associated 93.1 0.23 5.1E-06 30.8 4.3 62 34-98 2-64 (68)
151 KOG4410 5-formyltetrahydrofola 92.6 0.55 1.2E-05 37.3 6.6 49 17-71 328-377 (396)
152 KOG4483 Uncharacterized conser 92.2 0.46 1E-05 39.4 6.0 57 17-80 389-446 (528)
153 KOG2891 Surface glycoprotein [ 91.1 0.11 2.3E-06 41.1 1.3 39 15-53 145-195 (445)
154 KOG4207 Predicted splicing fac 90.4 6.6 0.00014 30.0 10.1 59 31-89 28-88 (256)
155 KOG4019 Calcineurin-mediated s 89.6 0.37 7.9E-06 35.7 2.8 76 17-98 8-89 (193)
156 KOG2295 C2H2 Zn-finger protein 84.8 0.12 2.5E-06 44.5 -2.3 73 17-89 229-301 (648)
157 PF03468 XS: XS domain; Inter 84.1 2.5 5.4E-05 29.1 4.4 56 21-79 10-75 (116)
158 COG5638 Uncharacterized conser 80.2 6.6 0.00014 33.0 6.2 77 13-89 140-286 (622)
159 KOG1295 Nonsense-mediated deca 79.5 2.3 5E-05 35.1 3.4 69 18-86 6-77 (376)
160 COG0724 RNA-binding proteins ( 79.5 2.4 5.3E-05 32.2 3.5 66 13-78 219-284 (306)
161 KOG4365 Uncharacterized conser 79.2 0.33 7.1E-06 40.7 -1.5 77 20-97 4-80 (572)
162 PF10567 Nab6_mRNP_bdg: RNA-re 75.2 8.4 0.00018 30.9 5.2 82 16-97 12-106 (309)
163 KOG4454 RNA binding protein (R 73.5 0.84 1.8E-05 35.0 -0.6 76 17-93 78-157 (267)
164 PF15513 DUF4651: Domain of un 71.7 11 0.00025 22.8 4.1 19 34-52 9-27 (62)
165 PF00403 HMA: Heavy-metal-asso 67.5 22 0.00049 20.7 6.2 54 21-80 1-58 (62)
166 PF02714 DUF221: Domain of unk 66.9 8 0.00017 31.2 3.7 32 64-97 1-32 (325)
167 PRK11230 glycolate oxidase sub 64.5 43 0.00094 29.1 7.9 50 33-83 203-256 (499)
168 COG0150 PurM Phosphoribosylami 62.1 2.8 6.1E-05 34.3 0.2 48 33-84 275-322 (345)
169 PF14893 PNMA: PNMA 61.4 13 0.00028 30.5 3.9 56 16-73 15-74 (331)
170 PRK10629 EnvZ/OmpR regulon mod 60.9 54 0.0012 22.9 8.1 71 19-97 35-109 (127)
171 KOG3424 40S ribosomal protein 60.4 35 0.00076 23.6 5.2 46 30-76 34-84 (132)
172 KOG3702 Nuclear polyadenylated 59.8 8.7 0.00019 34.1 2.8 70 21-91 513-582 (681)
173 KOG4008 rRNA processing protei 59.7 8.3 0.00018 29.9 2.4 36 15-50 36-71 (261)
174 PRK11901 hypothetical protein; 58.2 44 0.00095 27.3 6.3 64 17-85 243-308 (327)
175 PF07292 NID: Nmi/IFP 35 domai 57.4 19 0.00041 23.5 3.5 31 64-95 1-33 (88)
176 COG2608 CopZ Copper chaperone 57.4 43 0.00093 20.6 5.7 45 20-70 4-48 (71)
177 COG5507 Uncharacterized conser 56.2 14 0.00031 24.6 2.7 21 61-81 66-86 (117)
178 PF01282 Ribosomal_S24e: Ribos 55.4 54 0.0012 21.1 5.9 47 29-76 11-62 (84)
179 COG3254 Uncharacterized conser 54.6 55 0.0012 22.1 5.3 42 34-78 27-68 (105)
180 KOG4213 RNA-binding protein La 54.3 21 0.00046 26.6 3.6 49 31-79 118-168 (205)
181 PF03439 Spt5-NGN: Early trans 54.3 21 0.00047 22.8 3.4 24 60-83 43-66 (84)
182 KOG0156 Cytochrome P450 CYP2 s 51.5 36 0.00078 29.5 5.2 68 13-91 27-97 (489)
183 TIGR03636 L23_arch archaeal ri 51.0 56 0.0012 20.7 4.8 57 22-81 16-74 (77)
184 PF11823 DUF3343: Protein of u 50.7 29 0.00062 21.4 3.4 26 63-88 3-28 (73)
185 PRK08559 nusG transcription an 50.2 56 0.0012 23.4 5.4 34 46-84 36-69 (153)
186 PF09902 DUF2129: Uncharacteri 50.2 49 0.0011 20.7 4.3 38 39-85 16-53 (71)
187 KOG4840 Predicted hydrolases o 49.0 42 0.00091 26.2 4.6 74 19-97 37-116 (299)
188 PF08734 GYD: GYD domain; Int 48.8 73 0.0016 20.7 5.9 45 34-82 23-68 (91)
189 COG0225 MsrA Peptide methionin 48.7 52 0.0011 24.4 4.9 74 21-98 59-137 (174)
190 PF08156 NOP5NT: NOP5NT (NUC12 48.1 6.2 0.00013 24.3 0.1 39 34-82 27-65 (67)
191 TIGR00387 glcD glycolate oxida 47.6 95 0.0021 26.2 7.1 51 31-82 144-198 (413)
192 PF07237 DUF1428: Protein of u 47.2 87 0.0019 21.1 5.9 48 35-82 24-86 (103)
193 PRK14548 50S ribosomal protein 46.3 66 0.0014 20.8 4.6 56 23-81 24-81 (84)
194 PF09383 NIL: NIL domain; Int 46.0 40 0.00087 20.8 3.6 52 30-83 13-68 (76)
195 smart00666 PB1 PB1 domain. Pho 45.6 72 0.0016 19.7 6.7 56 22-82 12-69 (81)
196 PRK01178 rps24e 30S ribosomal 45.5 77 0.0017 21.1 5.0 46 30-76 30-80 (99)
197 PF07420 DUF1509: Protein of u 45.1 17 0.00037 29.1 2.1 18 167-184 333-350 (377)
198 PF11411 DNA_ligase_IV: DNA li 44.7 18 0.00039 19.4 1.5 16 29-44 19-34 (36)
199 PRK02302 hypothetical protein; 44.4 64 0.0014 21.1 4.3 38 39-85 22-59 (89)
200 PRK10905 cell division protein 44.0 54 0.0012 26.8 4.8 63 18-84 246-309 (328)
201 smart00195 DSPc Dual specifici 43.2 1E+02 0.0022 21.0 5.8 18 21-38 7-24 (138)
202 PF05189 RTC_insert: RNA 3'-te 42.0 67 0.0015 21.2 4.4 48 21-68 12-64 (103)
203 COG5193 LHP1 La protein, small 41.8 14 0.0003 31.0 1.2 60 20-79 175-244 (438)
204 PLN02805 D-lactate dehydrogena 41.4 1.6E+02 0.0035 26.1 7.7 50 32-82 279-332 (555)
205 KOG0835 Cyclin L [General func 40.4 45 0.00096 27.4 3.8 6 32-37 214-219 (367)
206 PF05036 SPOR: Sporulation rel 40.3 9.2 0.0002 23.2 -0.0 60 20-82 5-65 (76)
207 PF08544 GHMP_kinases_C: GHMP 39.6 91 0.002 19.2 5.4 43 34-82 37-80 (85)
208 PF14581 SseB_C: SseB protein 38.9 58 0.0013 21.6 3.8 81 17-97 3-89 (108)
209 KOG2854 Possible pfkB family c 38.7 38 0.00082 27.8 3.2 64 17-80 158-231 (343)
210 cd00027 BRCT Breast Cancer Sup 38.7 76 0.0017 18.0 4.7 26 20-45 2-27 (72)
211 PF11491 DUF3213: Protein of u 38.3 1.1E+02 0.0024 19.7 4.7 67 22-95 3-73 (88)
212 COG5584 Predicted small secret 37.5 86 0.0019 20.8 4.1 31 26-56 29-59 (103)
213 KOG2187 tRNA uracil-5-methyltr 37.3 33 0.00072 29.9 2.8 38 61-98 63-100 (534)
214 CHL00123 rps6 ribosomal protei 36.9 1.2E+02 0.0027 19.9 6.5 57 21-79 10-80 (97)
215 COG4010 Uncharacterized protei 36.7 1.3E+02 0.0029 21.6 5.2 46 26-81 118-163 (170)
216 cd04904 ACT_AAAH ACT domain of 36.5 1E+02 0.0022 18.9 7.1 50 32-83 13-65 (74)
217 KOG1999 RNA polymerase II tran 36.3 1.1E+02 0.0023 29.0 5.9 27 61-87 210-236 (1024)
218 PTZ00071 40S ribosomal protein 35.7 1.3E+02 0.0029 21.2 5.1 46 30-76 35-86 (132)
219 PF14026 DUF4242: Protein of u 35.7 1.1E+02 0.0025 19.1 8.1 61 22-85 3-70 (77)
220 PF09869 DUF2096: Uncharacteri 35.6 1.4E+02 0.003 22.0 5.4 51 20-81 113-163 (169)
221 KOG3580 Tight junction protein 35.5 2.9E+02 0.0064 25.0 8.1 17 63-79 63-79 (1027)
222 COG0030 KsgA Dimethyladenosine 35.1 45 0.00098 26.4 3.1 33 19-51 95-127 (259)
223 KOG3432 Vacuolar H+-ATPase V1 34.7 66 0.0014 21.9 3.3 24 28-51 42-65 (121)
224 PF09707 Cas_Cas2CT1978: CRISP 34.7 1.2E+02 0.0026 19.6 4.5 50 17-69 23-72 (86)
225 PRK10590 ATP-dependent RNA hel 34.4 2.9E+02 0.0063 23.5 12.1 9 21-29 316-324 (456)
226 PRK12450 foldase protein PrsA; 34.2 96 0.0021 25.1 4.9 39 30-82 132-170 (309)
227 KOG3671 Actin regulatory prote 33.7 64 0.0014 28.0 3.9 47 33-84 92-138 (569)
228 PF12829 Mhr1: Transcriptional 33.5 1.2E+02 0.0026 19.9 4.4 53 26-82 19-72 (91)
229 cd04880 ACT_AAAH-PDT-like ACT 32.5 1.2E+02 0.0025 18.4 6.2 51 32-83 12-66 (75)
230 PF01071 GARS_A: Phosphoribosy 32.5 1.5E+02 0.0033 22.3 5.4 59 32-94 25-86 (194)
231 PF14111 DUF4283: Domain of un 32.3 18 0.00039 25.5 0.4 73 20-98 16-91 (153)
232 KOG2888 Putative RNA binding p 32.0 19 0.00041 29.5 0.5 10 34-43 172-181 (453)
233 PF04127 DFP: DNA / pantothena 31.9 1.9E+02 0.0042 21.5 5.9 59 21-81 20-79 (185)
234 TIGR00110 ilvD dihydroxy-acid 31.6 3.6E+02 0.0079 23.9 8.2 36 61-99 383-418 (535)
235 PRK06737 acetolactate synthase 31.5 1.4E+02 0.003 18.8 7.2 61 21-84 6-67 (76)
236 PF12623 Hen1_L: RNA repair, l 31.5 1.9E+02 0.0041 22.6 5.8 67 15-82 114-184 (245)
237 PTZ00191 60S ribosomal protein 31.3 1.5E+02 0.0032 21.3 4.9 54 23-79 85-140 (145)
238 PHA01632 hypothetical protein 31.3 49 0.0011 19.6 2.0 19 24-42 21-39 (64)
239 PRK05772 translation initiatio 31.2 1.5E+02 0.0032 24.8 5.6 50 31-82 3-57 (363)
240 PF00585 Thr_dehydrat_C: C-ter 31.0 1.5E+02 0.0033 19.1 5.0 62 21-84 11-74 (91)
241 COG5470 Uncharacterized conser 30.8 1.2E+02 0.0026 20.1 4.0 42 35-78 24-70 (96)
242 cd06408 PB1_NoxR The PB1 domai 30.2 1.6E+02 0.0034 19.1 4.8 53 24-82 15-68 (86)
243 PRK00911 dihydroxy-acid dehydr 30.0 3.8E+02 0.0083 23.8 8.1 36 61-99 398-433 (552)
244 KOG0862 Synaptobrevin/VAMP-lik 29.8 31 0.00068 26.4 1.4 13 59-71 107-119 (216)
245 TIGR00405 L26e_arch ribosomal 29.8 1.7E+02 0.0038 20.5 5.2 25 60-84 37-61 (145)
246 PF00564 PB1: PB1 domain; Int 29.7 1.1E+02 0.0024 18.9 3.8 54 26-84 17-72 (84)
247 COG1098 VacB Predicted RNA bin 29.3 1.7E+02 0.0037 20.5 4.7 33 64-96 21-61 (129)
248 PF08206 OB_RNB: Ribonuclease 29.0 20 0.00044 21.1 0.2 37 60-97 7-44 (58)
249 PF00398 RrnaAD: Ribosomal RNA 28.4 65 0.0014 25.2 3.0 23 19-41 97-119 (262)
250 KOG1232 Proteins containing th 28.0 98 0.0021 26.2 3.9 54 25-79 230-287 (511)
251 PF13291 ACT_4: ACT domain; PD 27.8 1.5E+02 0.0033 18.1 7.1 63 21-83 8-71 (80)
252 PRK02886 hypothetical protein; 27.8 1.8E+02 0.0039 19.0 4.4 38 39-85 20-57 (87)
253 PF14401 RLAN: RimK-like ATPgr 26.5 1.6E+02 0.0034 21.3 4.5 58 19-76 87-145 (153)
254 PF01037 AsnC_trans_reg: AsnC 26.4 1.5E+02 0.0032 17.6 6.6 45 32-80 11-55 (74)
255 PF01842 ACT: ACT domain; Int 26.3 1.4E+02 0.0029 17.1 5.7 47 32-81 13-61 (66)
256 PF09341 Pcc1: Transcription f 26.2 1.1E+02 0.0025 18.8 3.3 20 63-82 4-23 (76)
257 KOG1719 Dual specificity phosp 25.7 2.8E+02 0.006 20.4 5.5 27 69-95 90-116 (183)
258 COG0217 Uncharacterized conser 25.6 3.3E+02 0.0072 21.3 6.4 39 17-55 92-136 (241)
259 PRK00274 ksgA 16S ribosomal RN 25.4 73 0.0016 25.1 2.8 22 21-42 107-128 (272)
260 PF03389 MobA_MobL: MobA/MobL 25.4 2.4E+02 0.0051 21.5 5.5 48 21-71 69-124 (216)
261 TIGR00755 ksgA dimethyladenosi 25.2 1E+02 0.0022 23.9 3.6 24 21-44 96-119 (253)
262 PF05727 UPF0228: Uncharacteri 25.2 1.7E+02 0.0036 20.5 4.1 54 27-95 59-122 (127)
263 TIGR01743 purR_Bsub pur operon 24.9 2E+02 0.0043 22.9 5.1 42 36-82 45-86 (268)
264 TIGR01033 DNA-binding regulato 24.7 3E+02 0.0066 21.4 6.0 29 17-45 92-122 (238)
265 PF13820 Nucleic_acid_bd: Puta 24.7 1.7E+02 0.0037 21.1 4.3 22 62-83 46-67 (149)
266 PRK04405 prsA peptidylprolyl i 24.6 1.7E+02 0.0038 23.5 4.9 40 30-83 128-167 (298)
267 PTZ00338 dimethyladenosine tra 24.6 66 0.0014 25.9 2.4 22 21-42 103-124 (294)
268 PLN02373 soluble inorganic pyr 24.3 80 0.0017 23.7 2.6 38 33-82 138-175 (188)
269 PF14657 Integrase_AP2: AP2-li 24.3 1.4E+02 0.003 16.5 3.8 30 53-82 9-38 (46)
270 cd04878 ACT_AHAS N-terminal AC 24.2 1.5E+02 0.0033 17.0 7.6 50 32-83 13-64 (72)
271 COG5594 Uncharacterized integr 24.0 85 0.0018 29.0 3.1 28 61-88 357-384 (827)
272 PRK09213 pur operon repressor; 23.6 2E+02 0.0044 22.9 5.0 42 36-82 47-88 (271)
273 TIGR00587 nfo apurinic endonuc 23.5 1.8E+02 0.0039 22.9 4.7 58 19-82 137-202 (274)
274 COG1207 GlmU N-acetylglucosami 23.5 2.5E+02 0.0055 24.1 5.6 67 17-83 95-173 (460)
275 cd06405 PB1_Mekk2_3 The PB1 do 22.9 2.1E+02 0.0046 18.1 7.6 61 26-95 15-76 (79)
276 PF07045 DUF1330: Protein of u 22.7 1.8E+02 0.0039 17.3 5.0 42 36-79 11-57 (65)
277 cd04889 ACT_PDH-BS-like C-term 22.6 1.6E+02 0.0034 16.5 5.7 42 34-78 13-55 (56)
278 PF08442 ATP-grasp_2: ATP-gras 22.5 1.8E+02 0.0039 22.0 4.3 53 31-87 25-81 (202)
279 cd00412 pyrophosphatase Inorga 22.4 81 0.0018 22.9 2.3 38 33-81 116-153 (155)
280 PRK00110 hypothetical protein; 22.1 3.2E+02 0.007 21.4 5.7 29 17-45 92-122 (245)
281 PF04026 SpoVG: SpoVG; InterP 22.1 2.2E+02 0.0048 18.3 4.1 26 45-70 2-27 (84)
282 COG5236 Uncharacterized conser 22.1 2.9E+02 0.0062 23.1 5.5 49 34-90 265-313 (493)
283 PF06014 DUF910: Bacterial pro 21.8 74 0.0016 19.3 1.7 18 32-49 3-20 (62)
284 PF01762 Galactosyl_T: Galacto 21.8 1.3E+02 0.0028 22.2 3.4 36 17-52 19-57 (195)
285 PF02829 3H: 3H domain; Inter 21.8 2.5E+02 0.0055 18.6 6.9 52 29-83 7-58 (98)
286 PF02617 ClpS: ATP-dependent C 21.3 98 0.0021 19.5 2.3 34 61-94 47-81 (82)
287 PF11004 Kdo_hydroxy: 3-deoxy- 21.2 1.9E+02 0.0042 23.1 4.3 47 15-62 17-64 (281)
288 KOG0132 RNA polymerase II C-te 21.2 2.6E+02 0.0056 26.0 5.5 17 62-78 510-526 (894)
289 PRK13014 methionine sulfoxide 21.1 2.5E+02 0.0053 21.1 4.7 24 21-44 61-84 (186)
290 PRK14054 methionine sulfoxide 21.0 2.3E+02 0.0049 21.0 4.5 73 21-96 56-132 (172)
291 PF05573 NosL: NosL; InterPro 21.0 1.3E+02 0.0029 21.3 3.2 21 61-81 114-134 (149)
292 smart00650 rADc Ribosomal RNA 21.0 1.8E+02 0.0038 20.8 3.9 23 20-42 78-100 (169)
293 COG1691 NCAIR mutase (PurE)-re 20.9 88 0.0019 24.4 2.3 54 27-81 15-69 (254)
294 PF13689 DUF4154: Domain of un 20.8 2E+02 0.0044 20.1 4.1 34 63-97 28-61 (145)
295 PRK12378 hypothetical protein; 20.7 3.7E+02 0.0081 20.9 5.8 29 17-45 89-119 (235)
296 PRK11558 putative ssRNA endonu 20.6 2.4E+02 0.0051 18.8 4.0 51 17-70 25-75 (97)
297 PF00719 Pyrophosphatase: Inor 20.5 1.8E+02 0.0039 21.1 3.8 38 33-81 113-150 (156)
298 COG0045 SucC Succinyl-CoA synt 20.1 5.4E+02 0.012 21.8 7.1 63 31-96 26-95 (387)
No 1
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=7.3e-24 Score=151.70 Aligned_cols=81 Identities=37% Similarity=0.606 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
+.+++|||+||+..+++.||+.+|..||.|..|+|..++ .|||||||++..+|+.|+..|+|..|+|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 457999999999999999999999999999999998754 789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 029810 97 RRKRPR 102 (187)
Q Consensus 97 ~~~~~~ 102 (187)
+.+...
T Consensus 83 ~G~~r~ 88 (195)
T KOG0107|consen 83 TGRPRG 88 (195)
T ss_pred cCCccc
Confidence 877653
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.91 E-value=5.5e-23 Score=147.68 Aligned_cols=87 Identities=26% Similarity=0.404 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
.....++|||+|||+++++++|+++|.+||.|..|.|+.+..|+++++||||+|++.++|++||+.|++..|+|+.|.|+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 029810 95 RSRRKRP 101 (187)
Q Consensus 95 ~a~~~~~ 101 (187)
++..+..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9986543
No 3
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=5.9e-20 Score=141.48 Aligned_cols=100 Identities=27% Similarity=0.402 Sum_probs=90.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
.....++-+||||+-|+.+|+|.+|+.+|+.||+|+.|.|+.++.|++++|||||+|+++.++.+|.+..+|..|+|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 34445788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCC
Q 029810 92 TVERSRRKRPRTPTPGHYLG 111 (187)
Q Consensus 92 ~v~~a~~~~~~~~~~~~~~g 111 (187)
.|.+-.....+...|..-+|
T Consensus 174 ~VDvERgRTvkgW~PRRLGG 193 (335)
T KOG0113|consen 174 LVDVERGRTVKGWLPRRLGG 193 (335)
T ss_pred EEEecccccccccccccccC
Confidence 99998887777665544333
No 4
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.84 E-value=9.3e-20 Score=133.96 Aligned_cols=89 Identities=34% Similarity=0.526 Sum_probs=82.8
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.++.+.-++|.|-||..-|+.++|..+|++||.|.+|.|+.|..|.+++|||||.|....+|+.|+++|+|..|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 45566678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 029810 93 VERSRRKRP 101 (187)
Q Consensus 93 v~~a~~~~~ 101 (187)
|++|+-...
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 999885433
No 5
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.7e-20 Score=127.10 Aligned_cols=98 Identities=29% Similarity=0.473 Sum_probs=88.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
....+++|||+||+..++|++|.++|+++|+|..|.|-.|+.+..++|||||+|.+.++|+.||+.+++..++.+.|.|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029810 95 RSRRKRPRTPTPGHYLGLKSSRDIGRGDRGR 125 (187)
Q Consensus 95 ~a~~~~~~~~~~~~~~g~~~~r~~g~g~~g~ 125 (187)
|.- |.-.++.+|+|..|+
T Consensus 112 ~D~-------------GF~eGRQyGRG~sGG 129 (153)
T KOG0121|consen 112 WDA-------------GFVEGRQYGRGKSGG 129 (153)
T ss_pred ccc-------------cchhhhhhcCCCCCC
Confidence 854 455567777776654
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.81 E-value=6.9e-19 Score=142.96 Aligned_cols=84 Identities=30% Similarity=0.461 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC--eEEEEEe
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG--RYITVER 95 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g--~~l~v~~ 95 (187)
..++|||+|||+.+++++|+++|++||+|+.|.|+.+..++++++||||+|++.++|++||+.|++..|.+ +.|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999998866 6899999
Q ss_pred ccCCCC
Q 029810 96 SRRKRP 101 (187)
Q Consensus 96 a~~~~~ 101 (187)
++....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 886543
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.81 E-value=3.1e-19 Score=144.96 Aligned_cols=85 Identities=31% Similarity=0.497 Sum_probs=80.7
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.+....++|||+|||+++|+++|+++|+.||+|+.|+|+.+..++++++||||+|+++++|++||+.|++..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccC
Q 029810 94 ERSRR 98 (187)
Q Consensus 94 ~~a~~ 98 (187)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98765
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.80 E-value=6.6e-19 Score=143.85 Aligned_cols=84 Identities=26% Similarity=0.349 Sum_probs=79.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
.+.+|||+|||+.+++++|+++|++||.|..|.|+.+..|+.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 029810 98 RKRP 101 (187)
Q Consensus 98 ~~~~ 101 (187)
.+..
T Consensus 348 ~~~~ 351 (352)
T TIGR01661 348 NKAY 351 (352)
T ss_pred CCCC
Confidence 7643
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=1.7e-18 Score=141.50 Aligned_cols=83 Identities=30% Similarity=0.432 Sum_probs=79.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
+.++|||+|||..+++++|+++|+.||+|..|.|+.++.+++++|||||+|.+.++|++||+.|++..|.|+.|.|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 029810 98 RKR 100 (187)
Q Consensus 98 ~~~ 100 (187)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.77 E-value=2.8e-18 Score=107.98 Aligned_cols=70 Identities=39% Similarity=0.605 Sum_probs=66.6
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 22 l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
|||+|||+++++++|+++|.+||.|..+.+..+ .++..+++|||+|++.++|++|++.|++..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 6788899999999999999999999999999999885
No 11
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3e-18 Score=128.90 Aligned_cols=84 Identities=35% Similarity=0.486 Sum_probs=80.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
....++|-|.||+.++++++|.++|.+||.|..|.|..++.||.++|||||+|.+.++|++||+.|||.-++.-.|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 029810 96 SRRK 99 (187)
Q Consensus 96 a~~~ 99 (187)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9975
No 12
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=6.4e-18 Score=116.52 Aligned_cols=84 Identities=27% Similarity=0.480 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
...+..|||.++...+++++|.+.|..||+|++|++.++..||..+|||+|+|++.++|++||..|||..|.++.|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 029810 96 SRRK 99 (187)
Q Consensus 96 a~~~ 99 (187)
+..+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8755
No 13
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=6.2e-18 Score=126.63 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
.-++|||++|+|++..++|+++|++||+|++..|+.|+.|++++||+||+|.+.+.|+.|++ -....|+|++..|++|-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhh
Confidence 45799999999999999999999999999999999999999999999999999999999999 34568999999988875
Q ss_pred C
Q 029810 98 R 98 (187)
Q Consensus 98 ~ 98 (187)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 14
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=4.3e-17 Score=118.17 Aligned_cols=81 Identities=28% Similarity=0.381 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
...++|||+|||.++.+.+|+++|.+||.|..|.|.... ...+||||+|+++.+|+.||..-+|..++|..|.|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 456899999999999999999999999999999986543 23579999999999999999999999999999999998
Q ss_pred cCCC
Q 029810 97 RRKR 100 (187)
Q Consensus 97 ~~~~ 100 (187)
..-.
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 7543
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.71 E-value=1.2e-16 Score=100.96 Aligned_cols=70 Identities=37% Similarity=0.616 Sum_probs=64.4
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 22 l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
|||+|||+++++++|.++|..||.|..+.+..++. +..+++|||+|.++++|++|+..+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88899999999999999999999998999999874
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.70 E-value=5.9e-16 Score=132.38 Aligned_cols=77 Identities=36% Similarity=0.453 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcC--CceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKE--GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
...++|||+||++++++++|+++|++| |+|+.|.++ ++||||+|++.++|++||+.||+.+|+|+.|+|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 446789999999999999999999999 999999876 4599999999999999999999999999999999
Q ss_pred eccCCCC
Q 029810 95 RSRRKRP 101 (187)
Q Consensus 95 ~a~~~~~ 101 (187)
|+++...
T Consensus 303 ~Akp~~~ 309 (578)
T TIGR01648 303 LAKPVDK 309 (578)
T ss_pred EccCCCc
Confidence 9987543
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.69 E-value=2.9e-16 Score=134.56 Aligned_cols=85 Identities=22% Similarity=0.455 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
...++|||+||+.++++++|+++|+.||.|..+.|..+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34579999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 029810 97 RRKRP 101 (187)
Q Consensus 97 ~~~~~ 101 (187)
...+.
T Consensus 282 i~pP~ 286 (612)
T TIGR01645 282 VTPPD 286 (612)
T ss_pred CCCcc
Confidence 86543
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.68 E-value=2.7e-16 Score=121.20 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccC
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 98 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 98 (187)
.++|||+||++.+++++|+++|+.||+|..|.|+.+.. ..+||||+|.++++|+.||. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998764 36899999999999999996 999999999999999864
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.68 E-value=4.5e-16 Score=132.99 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
...++|||+|||..+++++|+++|+.||.|..+.|+.+..++.++|||||+|.+.++|+.||+.|+|..|.|+.|.|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCC
Q 029810 97 RRK 99 (187)
Q Consensus 97 ~~~ 99 (187)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 654
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=3e-16 Score=134.51 Aligned_cols=83 Identities=28% Similarity=0.393 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
.....++|||+||++.+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|+.||+.|||..|.|+.|.|.
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecc
Q 029810 95 RSR 97 (187)
Q Consensus 95 ~a~ 97 (187)
+..
T Consensus 183 rp~ 185 (612)
T TIGR01645 183 RPS 185 (612)
T ss_pred ccc
Confidence 644
No 21
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=3.4e-16 Score=122.24 Aligned_cols=86 Identities=33% Similarity=0.503 Sum_probs=77.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
..+.....+.|+|.|||+...+.||+.+|.+||.|.+|.|+.+. .-+|||+||+|++.++|++|-++|||..|.|++|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 34455667899999999999999999999999999999999875 3369999999999999999999999999999999
Q ss_pred EEEeccCC
Q 029810 92 TVERSRRK 99 (187)
Q Consensus 92 ~v~~a~~~ 99 (187)
+|..++..
T Consensus 167 EVn~ATar 174 (376)
T KOG0125|consen 167 EVNNATAR 174 (376)
T ss_pred EEeccchh
Confidence 99998754
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.66 E-value=5.6e-16 Score=130.81 Aligned_cols=81 Identities=30% Similarity=0.455 Sum_probs=77.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
..++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|+|..|.|+.|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred C
Q 029810 98 R 98 (187)
Q Consensus 98 ~ 98 (187)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.65 E-value=8.6e-16 Score=129.68 Aligned_cols=83 Identities=33% Similarity=0.472 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
..+..+|||+|||..+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||. |++..|.|..|.|++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999998 999999999999988
Q ss_pred ccCC
Q 029810 96 SRRK 99 (187)
Q Consensus 96 a~~~ 99 (187)
+...
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 7543
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.65 E-value=7.3e-16 Score=133.28 Aligned_cols=79 Identities=34% Similarity=0.457 Sum_probs=75.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 98 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 98 (187)
.+|||+|||.++|+++|.++|.+||.|..|.|+.+..|++++|||||+|.+.++|++||+.|++..|.|+.|.|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999764
No 25
>PLN03213 repressor of silencing 3; Provisional
Probab=99.65 E-value=6.5e-16 Score=126.56 Aligned_cols=81 Identities=27% Similarity=0.415 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCH--HHHHHHHHHhCCCccCCeEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGV--EDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~--~~a~~ai~~l~g~~i~g~~l 91 (187)
+....+.+|||+||++.+++++|..+|..||.|..|.|+ ..|| +|||||+|.+. +++++||..|||..|.|..|
T Consensus 5 es~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 5 SSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 345567899999999999999999999999999999998 5566 89999999987 78999999999999999999
Q ss_pred EEEeccC
Q 029810 92 TVERSRR 98 (187)
Q Consensus 92 ~v~~a~~ 98 (187)
+|+.|++
T Consensus 81 KVNKAKP 87 (759)
T PLN03213 81 RLEKAKE 87 (759)
T ss_pred EEeeccH
Confidence 9999886
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2e-16 Score=117.61 Aligned_cols=89 Identities=33% Similarity=0.502 Sum_probs=83.0
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.....-.+|||++|..++++.-|...|-+||.|+.|.++.|.++++.++|+||+|+..|+|.+||..||+.+|.|+.|.|
T Consensus 5 ~~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 5 QMANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred cccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 34556689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 029810 94 ERSRRKRPR 102 (187)
Q Consensus 94 ~~a~~~~~~ 102 (187)
.+|+|.+..
T Consensus 85 N~AkP~kik 93 (298)
T KOG0111|consen 85 NLAKPEKIK 93 (298)
T ss_pred eecCCcccc
Confidence 999986543
No 27
>smart00362 RRM_2 RNA recognition motif.
Probab=99.65 E-value=1.6e-15 Score=94.84 Aligned_cols=72 Identities=44% Similarity=0.626 Sum_probs=66.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
+|||.|||..+++++|+++|.+||.|..+.+..+. +.+.++|||+|.+.++|++|++.+++..|.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999888765 5678999999999999999999999999999998873
No 28
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.64 E-value=1.5e-15 Score=115.38 Aligned_cols=77 Identities=23% Similarity=0.287 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
..+.+|||+||++.+|+++|++||+.||+|..|.|+.+..+ .+||||+|+++++|+.||. |+|..|.++.|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 35689999999999999999999999999999999988543 4799999999999999997 9999999999999876
Q ss_pred c
Q 029810 97 R 97 (187)
Q Consensus 97 ~ 97 (187)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=8.8e-16 Score=131.30 Aligned_cols=78 Identities=29% Similarity=0.477 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CeEEEEE
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GRYITVE 94 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~-g~~l~v~ 94 (187)
...+++|||+|||+++++++|.++|++||.|..|.|+.+ .++++++||||+|.+.++|++||+.||+..|. ++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445799999999999999999999999999999999999 78999999999999999999999999998774 5555554
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.64 E-value=5.1e-16 Score=112.22 Aligned_cols=84 Identities=32% Similarity=0.431 Sum_probs=79.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.+.+...+|||+||+..++++.|+++|-+.|+|..++|+.+..+...+|||||+|.++++|+-||+.|+...|.|++|.|
T Consensus 4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 4 IERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred cccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 35667899999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred Eecc
Q 029810 94 ERSR 97 (187)
Q Consensus 94 ~~a~ 97 (187)
..+.
T Consensus 84 ~kas 87 (203)
T KOG0131|consen 84 NKAS 87 (203)
T ss_pred Eecc
Confidence 9877
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.63 E-value=1.8e-15 Score=130.87 Aligned_cols=84 Identities=31% Similarity=0.552 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
...+++|||+||+.++++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|++||..||+..|.|+.|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 456788999999999999999999999999999999988 5788999999999999999999999999999999999999
Q ss_pred ccCCC
Q 029810 96 SRRKR 100 (187)
Q Consensus 96 a~~~~ 100 (187)
+..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 98653
No 32
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=3.1e-17 Score=118.49 Aligned_cols=80 Identities=28% Similarity=0.429 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
.+.-|||+|||.++||.||..+|++||+|+.|.++.|..||+++||||+.|++..+...|+..|||..|.|+.|.|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998654
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.1e-15 Score=116.66 Aligned_cols=88 Identities=28% Similarity=0.419 Sum_probs=81.9
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.+.......|||+.|...++-++|++.|.+||+|.+++|+.|..|++++||+||.|-+.++||.||..|+|..|..+.|.
T Consensus 56 k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 33444467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 029810 93 VERSRRKR 100 (187)
Q Consensus 93 v~~a~~~~ 100 (187)
..||..++
T Consensus 136 TNWATRKp 143 (321)
T KOG0148|consen 136 TNWATRKP 143 (321)
T ss_pred ccccccCc
Confidence 99998765
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3e-15 Score=114.37 Aligned_cols=82 Identities=20% Similarity=0.396 Sum_probs=75.6
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
...+.+++|||+||+..+++++|++.|+.||.|.+|.|+++ +||+||.|++.|.|..||..+|+.+|.|+.|++
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 34567899999999999999999999999999999999987 679999999999999999999999999999999
Q ss_pred EeccCCCC
Q 029810 94 ERSRRKRP 101 (187)
Q Consensus 94 ~~a~~~~~ 101 (187)
.|-+....
T Consensus 233 sWGKe~~~ 240 (321)
T KOG0148|consen 233 SWGKEGDD 240 (321)
T ss_pred eccccCCC
Confidence 99876544
No 35
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=7.4e-15 Score=96.97 Aligned_cols=81 Identities=23% Similarity=0.362 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
+++.+..|||.|||..+|.+++.++|.+||.|..|.|-..+.| +|.|||.|++..+|.+|+.+|.|..+.+..|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 4566789999999999999999999999999999999766554 7899999999999999999999999999999998
Q ss_pred eccC
Q 029810 95 RSRR 98 (187)
Q Consensus 95 ~a~~ 98 (187)
+.++
T Consensus 91 yyq~ 94 (124)
T KOG0114|consen 91 YYQP 94 (124)
T ss_pred ecCH
Confidence 8765
No 36
>smart00360 RRM RNA recognition motif.
Probab=99.61 E-value=4.1e-15 Score=92.62 Aligned_cols=71 Identities=44% Similarity=0.615 Sum_probs=66.5
Q ss_pred EcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 24 VTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 24 V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
|+|||..+++++|+++|.+||.|..+.+..+..++.++++|||+|.+.++|+.|+..|++..|.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999888778889999999999999999999999999999998874
No 37
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=4.6e-15 Score=120.05 Aligned_cols=83 Identities=31% Similarity=0.421 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc-CCeEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL-EGRYITV 93 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i-~g~~l~v 93 (187)
...-++.|||+.||.++.|++|.-+|++.|+|-++.|++++.+|.++|||||+|.+.++|++||+.||+++| .|+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 346789999999999999999999999999999999999999999999999999999999999999999988 5888888
Q ss_pred Eecc
Q 029810 94 ERSR 97 (187)
Q Consensus 94 ~~a~ 97 (187)
..+.
T Consensus 159 c~Sv 162 (506)
T KOG0117|consen 159 CVSV 162 (506)
T ss_pred EEee
Confidence 7654
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.59 E-value=1.2e-14 Score=123.63 Aligned_cols=80 Identities=26% Similarity=0.363 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 16 GNPGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
..++++|||+||++ .+++++|+++|++||.|..|+|+.+. ++||||+|.+.++|+.||..||+..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998763 6899999999999999999999999999999999
Q ss_pred eccCCC
Q 029810 95 RSRRKR 100 (187)
Q Consensus 95 ~a~~~~ 100 (187)
+++.+.
T Consensus 347 ~s~~~~ 352 (481)
T TIGR01649 347 PSKQQN 352 (481)
T ss_pred Eccccc
Confidence 987654
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.59 E-value=2.4e-14 Score=89.96 Aligned_cols=74 Identities=47% Similarity=0.630 Sum_probs=68.1
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
+|+|.|||..+++++|+++|..||.|..+.+..+..+ ...++|||+|.+.++|..|++.+++..+++..|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999877654 5678999999999999999999999999999998864
No 40
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.3e-14 Score=110.54 Aligned_cols=85 Identities=32% Similarity=0.429 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
..+.-+.|.|.-||.++|+++|+.+|...|+|+.|+++.|+.+|++.||+||.|-++++|++||..|||..+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 029810 95 RSRRK 99 (187)
Q Consensus 95 ~a~~~ 99 (187)
+|++.
T Consensus 117 yARPS 121 (360)
T KOG0145|consen 117 YARPS 121 (360)
T ss_pred eccCC
Confidence 99874
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=2.6e-15 Score=114.65 Aligned_cols=89 Identities=24% Similarity=0.361 Sum_probs=84.2
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
..+.+++++|||-.||.+..+.||.++|-.||.|+..+|+.|..|+.+++|+||.|+++.+|++||.+|||..|.-+.|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 029810 93 VERSRRKRP 101 (187)
Q Consensus 93 v~~a~~~~~ 101 (187)
|.+.+++..
T Consensus 359 VQLKRPkda 367 (371)
T KOG0146|consen 359 VQLKRPKDA 367 (371)
T ss_pred hhhcCcccc
Confidence 999887643
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.58 E-value=1.4e-14 Score=112.88 Aligned_cols=80 Identities=44% Similarity=0.595 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccC
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 98 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 98 (187)
..+|||+|||..+++++|.++|.+||.|..+.|..+..++.++|||||+|.+.++|..|+..+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999999653
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.4e-14 Score=109.04 Aligned_cols=83 Identities=29% Similarity=0.352 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
..+..|||-||.++++|.-|+++|.+||.|..|+|+.|..|.+++||+||.+.+-++|..||..|||..+.++.|.|.+.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q 029810 97 RRK 99 (187)
Q Consensus 97 ~~~ 99 (187)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 644
No 44
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.2e-15 Score=117.38 Aligned_cols=85 Identities=29% Similarity=0.485 Sum_probs=80.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
+..+|.+.|||..|.+-|+.+||.-+|+.||.|..|.|+.+..||.+..||||+|++.+++++|.-+|++..|++..|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccC
Q 029810 94 ERSRR 98 (187)
Q Consensus 94 ~~a~~ 98 (187)
.+++.
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 99764
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=5.8e-15 Score=119.51 Aligned_cols=77 Identities=31% Similarity=0.375 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
..-..|||.||+.+||++.|+++|.+||.|..|+.+.| ||||+|.+.++|.+||+.+|+++|+|..|.|.+|
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 34578999999999999999999999999999988744 9999999999999999999999999999999999
Q ss_pred cCCCC
Q 029810 97 RRKRP 101 (187)
Q Consensus 97 ~~~~~ 101 (187)
++..+
T Consensus 329 KP~~k 333 (506)
T KOG0117|consen 329 KPVDK 333 (506)
T ss_pred CChhh
Confidence 98654
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.56 E-value=2e-14 Score=122.17 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh--CCCccCCeEEEEEe
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL--NQSVLEGRYITVER 95 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l--~g~~i~g~~l~v~~ 95 (187)
++.+|||+|||+.+++++|.++|++||.|..|.|+.+ ++||||+|++.++|++||+.| ++..|.|+.|.|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999998853 579999999999999999975 67899999999999
Q ss_pred ccCC
Q 029810 96 SRRK 99 (187)
Q Consensus 96 a~~~ 99 (187)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8754
No 47
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.55 E-value=7.4e-15 Score=113.22 Aligned_cols=72 Identities=33% Similarity=0.539 Sum_probs=68.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccCC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 99 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 99 (187)
.+|||+|||.++++.+|+.+|++||+|.+|+|++ .|+||+.++...|+.||..||+.+|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 5799999999999999999999999999999984 49999999999999999999999999999999998876
No 48
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.54 E-value=1.7e-14 Score=119.32 Aligned_cols=82 Identities=29% Similarity=0.445 Sum_probs=79.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccCC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 99 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 99 (187)
..|||+|||.++++++|.++|+..|.|..++++.|.+||+++||||++|.+.++|+.|++.||+.++.|.+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred CC
Q 029810 100 RP 101 (187)
Q Consensus 100 ~~ 101 (187)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=2.1e-14 Score=115.93 Aligned_cols=89 Identities=26% Similarity=0.400 Sum_probs=79.2
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC-ccCC--eE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS-VLEG--RY 90 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~-~i~g--~~ 90 (187)
.++....++||+-||..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+||.. .|.| ..
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 33456679999999999999999999999999999999999999999999999999999999999999986 4554 57
Q ss_pred EEEEeccCCCCC
Q 029810 91 ITVERSRRKRPR 102 (187)
Q Consensus 91 l~v~~a~~~~~~ 102 (187)
|.|++|....++
T Consensus 109 vqvk~Ad~E~er 120 (510)
T KOG0144|consen 109 VQVKYADGERER 120 (510)
T ss_pred eeecccchhhhc
Confidence 899998876554
No 50
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.53 E-value=1.5e-14 Score=111.63 Aligned_cols=100 Identities=28% Similarity=0.470 Sum_probs=85.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
....++|+|+||.+.++.++|++.|++||+|++++|+ ++|+||+|+-.++|..||..|++.+|.|+.++|++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 4467899999999999999999999999999999998 45999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029810 96 SRRKRPRTPTPGHYLGLKSSRDIGRGDRGRYRS 128 (187)
Q Consensus 96 a~~~~~~~~~~~~~~g~~~~r~~g~g~~g~~~~ 128 (187)
++..-...+..+. ...++.+|..|.|..
T Consensus 147 stsrlrtapgmgD-----q~~cyrcGkeghwsk 174 (346)
T KOG0109|consen 147 STSRLRTAPGMGD-----QSGCYRCGKEGHWSK 174 (346)
T ss_pred eccccccCCCCCC-----HHHheeccccccccc
Confidence 9987766665542 234666676666643
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1.3e-14 Score=117.07 Aligned_cols=86 Identities=30% Similarity=0.521 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC-ccCC--eEEEE
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS-VLEG--RYITV 93 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~-~i~g--~~l~v 93 (187)
....+|||+.|+..++|.+|.++|.+||.|++|.|+.+.+ +.++|||||.|.+.+-|..||+.||+. ++.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 4478999999999999999999999999999999999875 888999999999999999999999996 4654 58999
Q ss_pred EeccCCCCCC
Q 029810 94 ERSRRKRPRT 103 (187)
Q Consensus 94 ~~a~~~~~~~ 103 (187)
+||.+++.+.
T Consensus 201 kFADtqkdk~ 210 (510)
T KOG0144|consen 201 KFADTQKDKD 210 (510)
T ss_pred EecccCCCch
Confidence 9999887653
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=9.8e-14 Score=114.93 Aligned_cols=86 Identities=33% Similarity=0.500 Sum_probs=77.7
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC-----C-CccC
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN-----Q-SVLE 87 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~-----g-~~i~ 87 (187)
++...+.+|||.|||+++|+++|.+.|.+||+|..+.|+.++.|+.++|.|||.|.+..+|++||+... + ..|.
T Consensus 287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 445567999999999999999999999999999999999999999999999999999999999999762 3 5688
Q ss_pred CeEEEEEeccCC
Q 029810 88 GRYITVERSRRK 99 (187)
Q Consensus 88 g~~l~v~~a~~~ 99 (187)
|+.|.|..+-++
T Consensus 367 GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 367 GRLLKVTLAVTR 378 (678)
T ss_pred ccEEeeeeccch
Confidence 999999988654
No 53
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.49 E-value=2.1e-13 Score=82.28 Aligned_cols=56 Identities=41% Similarity=0.576 Sum_probs=50.5
Q ss_pred HHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 36 LEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 36 L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
|.++|++||+|..+.+..+. .++|||+|.+.++|+.|++.||+..|.|++|.|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997553 479999999999999999999999999999999986
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.2e-13 Score=114.37 Aligned_cols=82 Identities=28% Similarity=0.494 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
+-..|+|.|||+.+.+.+|+.+|+.||.|..|.|+...+++. +|||||.|....+|+.||+.+|+..|+|++|.|.||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl-cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL-CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc-cceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 368999999999999999999999999999999997776555 4999999999999999999999999999999999987
Q ss_pred CCC
Q 029810 98 RKR 100 (187)
Q Consensus 98 ~~~ 100 (187)
++.
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 653
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.48 E-value=2.4e-13 Score=85.91 Aligned_cols=61 Identities=30% Similarity=0.485 Sum_probs=55.0
Q ss_pred HHHHHHHhh----cCCceeEEE-EeecCCC--CCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 33 ERDLEKHFS----KEGKVASCF-LVVEPRT--RISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 33 ~~~L~~~f~----~~G~i~~~~-i~~~~~~--~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
+++|+++|. +||.|..|. |+.+..+ +.++|||||+|.+.++|++|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777666 888999999999999999999999999999999876
No 56
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.47 E-value=8.9e-13 Score=108.69 Aligned_cols=88 Identities=22% Similarity=0.314 Sum_probs=72.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
..++.....+|||.|||.++++.+|+++|..||.|+...|..-...++..+||||+|.+.+.++.||++ +...|++++|
T Consensus 281 ~~~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl 359 (419)
T KOG0116|consen 281 NQEPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKL 359 (419)
T ss_pred CcceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeE
Confidence 344555667799999999999999999999999999987765443344448999999999999999995 4778999999
Q ss_pred EEEeccCCC
Q 029810 92 TVERSRRKR 100 (187)
Q Consensus 92 ~v~~a~~~~ 100 (187)
.|+..++..
T Consensus 360 ~Veek~~~~ 368 (419)
T KOG0116|consen 360 NVEEKRPGF 368 (419)
T ss_pred EEEeccccc
Confidence 999877543
No 57
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.43 E-value=2.1e-12 Score=104.72 Aligned_cols=79 Identities=22% Similarity=0.378 Sum_probs=72.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhh-cCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFS-KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
...+||+|||.++.|++|+++|. +.|+|..|.++.|. .++++|||.|||+++|.+++|++.||.+.++|+.|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 45699999999999999999995 78999999999886 58999999999999999999999999999999999998765
Q ss_pred C
Q 029810 98 R 98 (187)
Q Consensus 98 ~ 98 (187)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 3
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=2.5e-13 Score=107.93 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=74.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
-+.|||+.|.+++.|+.|+..|..||+|+.|.+.+|..|+++++||||+|+-+|.|+.|++.||+..+.|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999974
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.40 E-value=4.3e-13 Score=111.18 Aligned_cols=80 Identities=34% Similarity=0.471 Sum_probs=75.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccCC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 99 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 99 (187)
..|||+||..++++++|..+|+.||.|..|.+.++..||.++||+||+|.+.++|.+|++.|||.+|-|..|+|.....+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999876644
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.39 E-value=1.3e-12 Score=94.77 Aligned_cols=90 Identities=28% Similarity=0.381 Sum_probs=81.3
Q ss_pred CCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 11 GRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS-CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 11 ~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~-~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
..+...+.+..|||+||.+++++..|.++|+.||.|.. -.++.+..|+.+++|+||.|++.+.+.+||+.|++..++..
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr 167 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNR 167 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCC
Confidence 34556677799999999999999999999999998776 47888889999999999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 029810 90 YITVERSRRKR 100 (187)
Q Consensus 90 ~l~v~~a~~~~ 100 (187)
+|.|.++..+.
T Consensus 168 ~itv~ya~k~~ 178 (203)
T KOG0131|consen 168 PITVSYAFKKD 178 (203)
T ss_pred ceEEEEEEecC
Confidence 99999998653
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.36 E-value=2.2e-12 Score=110.35 Aligned_cols=75 Identities=21% Similarity=0.409 Sum_probs=61.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcC------------CceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKE------------GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~------------G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
.....+|||+|||+.+|+++|.++|.++ +.|..+.+. ..++||||+|.+.++|+.||+ |+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 4456799999999999999999999875 233444432 347899999999999999995 999
Q ss_pred CccCCeEEEEEecc
Q 029810 84 SVLEGRYITVERSR 97 (187)
Q Consensus 84 ~~i~g~~l~v~~a~ 97 (187)
..|.|..|.|....
T Consensus 245 ~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 245 IIYSNVFLKIRRPH 258 (509)
T ss_pred eEeeCceeEecCcc
Confidence 99999999997543
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.32 E-value=8.7e-12 Score=93.38 Aligned_cols=83 Identities=25% Similarity=0.423 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHH----HhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEK----HFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~----~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
+.+++.||||.||+..+..++|+. +|++||.|..|.+.. |.+.+|-|||.|.+.+.|-.|+.+|+|..|.|+.
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 345566999999999999998877 999999999998774 3556889999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 029810 91 ITVERSRRKR 100 (187)
Q Consensus 91 l~v~~a~~~~ 100 (187)
+.|++|+.+-
T Consensus 82 mriqyA~s~s 91 (221)
T KOG4206|consen 82 MRIQYAKSDS 91 (221)
T ss_pred hheecccCcc
Confidence 9999998653
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.1e-11 Score=101.54 Aligned_cols=79 Identities=29% Similarity=0.543 Sum_probs=73.2
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccCCCC
Q 029810 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRKRP 101 (187)
Q Consensus 22 l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~~~ 101 (187)
|||.||++.++..+|.++|+.||+|..|+|..+.. | ++|| ||+|+++++|++||+.|||..+.++.|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999998875 3 7999 9999999999999999999999999999988877665
Q ss_pred CC
Q 029810 102 RT 103 (187)
Q Consensus 102 ~~ 103 (187)
+.
T Consensus 156 r~ 157 (369)
T KOG0123|consen 156 RE 157 (369)
T ss_pred hc
Confidence 44
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.30 E-value=1.5e-11 Score=90.85 Aligned_cols=87 Identities=21% Similarity=0.267 Sum_probs=77.6
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcC-CceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKE-GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~-G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
.+.......+||..||..+.+.+|..+|.+| |.|..+.+..+..||.++|||||+|++++.|+-|.+.||+..|.++-|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3445566788999999999999999999998 678888888999999999999999999999999999999999999999
Q ss_pred EEEeccCC
Q 029810 92 TVERSRRK 99 (187)
Q Consensus 92 ~v~~a~~~ 99 (187)
.|.+..+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99886654
No 65
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.29 E-value=8.4e-12 Score=107.17 Aligned_cols=79 Identities=32% Similarity=0.537 Sum_probs=72.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccC
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 98 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 98 (187)
.+||||++|+..+++.||..+|+.||+|..|.++.. .+||||.+...++|++|+.+|....|.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 489999999999999999999999999999998755 67999999999999999999999999999999999986
Q ss_pred CCCCC
Q 029810 99 KRPRT 103 (187)
Q Consensus 99 ~~~~~ 103 (187)
+-.+.
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 65443
No 66
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.28 E-value=8.9e-12 Score=99.31 Aligned_cols=87 Identities=28% Similarity=0.454 Sum_probs=80.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
...+|||++||.++++++|+++|.+||.|..+.+++|..+...++|+||.|.+++++++++. ++-+.|+++.|.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999988 77889999999999999
Q ss_pred CCCCCCCC
Q 029810 98 RKRPRTPT 105 (187)
Q Consensus 98 ~~~~~~~~ 105 (187)
++....+.
T Consensus 175 pk~~~~~~ 182 (311)
T KOG4205|consen 175 PKEVMQST 182 (311)
T ss_pred chhhcccc
Confidence 88766544
No 67
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1.7e-11 Score=96.81 Aligned_cols=79 Identities=30% Similarity=0.484 Sum_probs=69.0
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh-CCCccCCeEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL-NQSVLEGRYIT 92 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l-~g~~i~g~~l~ 92 (187)
++...-++|||++|...+++.+|.+.|.+||+|..+.+... +++|||+|.+.+.|+.|.+++ +...|+|..|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 34445689999999999999999999999999999998765 459999999999999988765 44578999999
Q ss_pred EEeccC
Q 029810 93 VERSRR 98 (187)
Q Consensus 93 v~~a~~ 98 (187)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.26 E-value=2.3e-11 Score=101.67 Aligned_cols=84 Identities=37% Similarity=0.625 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
..+.+|||.+|...|...+|+.||++||.|+-.+|+++..+--..+|+||++.+.++|.+||..||..+|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34679999999999999999999999999999999988776666889999999999999999999999999999999998
Q ss_pred cCCC
Q 029810 97 RRKR 100 (187)
Q Consensus 97 ~~~~ 100 (187)
+..+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7543
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.24 E-value=1e-11 Score=99.00 Aligned_cols=83 Identities=31% Similarity=0.548 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
..++|||++|+|+++++.|++.|.+||+|.+|.++.+..++.+.+|+||+|++.+.+.++|. ...+.|+++.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999988888877 55678999999998887
Q ss_pred CCCC
Q 029810 98 RKRP 101 (187)
Q Consensus 98 ~~~~ 101 (187)
+...
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 7654
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=3.8e-11 Score=95.61 Aligned_cols=83 Identities=23% Similarity=0.472 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
..-+.|||..+.++++++||+.+|+.||+|..|.+.....++.++||+||+|.+......||..||-..+.|+-|.|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred cCC
Q 029810 97 RRK 99 (187)
Q Consensus 97 ~~~ 99 (187)
-..
T Consensus 288 vTP 290 (544)
T KOG0124|consen 288 VTP 290 (544)
T ss_pred cCC
Confidence 543
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=5.1e-11 Score=101.57 Aligned_cols=78 Identities=33% Similarity=0.477 Sum_probs=70.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTR---ISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~---~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
++|||.||++.++.++|..+|..+|.|..+.|.+.+... .+.|||||+|.++++|+.|++.|+|+.|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 449999999999999999999999999999887655321 23499999999999999999999999999999999998
Q ss_pred c
Q 029810 97 R 97 (187)
Q Consensus 97 ~ 97 (187)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 72
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.19 E-value=2.2e-10 Score=76.22 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=71.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhc--CCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC----CeEEEE
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSK--EGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE----GRYITV 93 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~----g~~l~v 93 (187)
+||.|.|||...+.++|.+++.. .|....+.++.|..+..+.|||||.|.+++.|....+.++|..|. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999998854 367778899999999999999999999999999999999999775 567889
Q ss_pred EeccCC
Q 029810 94 ERSRRK 99 (187)
Q Consensus 94 ~~a~~~ 99 (187)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 988754
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.18 E-value=1.3e-10 Score=89.42 Aligned_cols=83 Identities=25% Similarity=0.333 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
....++|+|.||+..++++||+++|..||.++.+.|.++. .|.+.|.|-|.|...++|++||+.+++..++|..|+++.
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3344889999999999999999999999999998888876 588899999999999999999999999999999999987
Q ss_pred ccCC
Q 029810 96 SRRK 99 (187)
Q Consensus 96 a~~~ 99 (187)
..+.
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 6643
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=9.9e-11 Score=96.05 Aligned_cols=74 Identities=38% Similarity=0.513 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccCC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 99 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 99 (187)
..|||+ +++|+..|.++|+.+|+|..+.|+.+. | +.|||||.|.++++|++||..||...|.|+.|.|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468998 899999999999999999999999998 7 8999999999999999999999999999999999998744
No 75
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.9e-11 Score=92.02 Aligned_cols=84 Identities=25% Similarity=0.441 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC-ccCC--eEEEEE
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS-VLEG--RYITVE 94 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~-~i~g--~~l~v~ 94 (187)
...+|||+.|...-.|+|+..+|..||.|.+|.+....+ +.++|||||.|.+..+|++||..|||. ++-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 568999999999999999999999999999999987764 788999999999999999999999997 4554 479999
Q ss_pred eccCCCCC
Q 029810 95 RSRRKRPR 102 (187)
Q Consensus 95 ~a~~~~~~ 102 (187)
++...+++
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 99876654
No 76
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=4.9e-11 Score=89.97 Aligned_cols=72 Identities=32% Similarity=0.548 Sum_probs=66.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccCC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 99 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 99 (187)
..|||++||+.+.+.+|.+||..||.|..|.|. .+|+||+|++..+|+.||..||+.+|.+..+.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999886 569999999999999999999999999999999998854
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.14 E-value=1.2e-10 Score=94.78 Aligned_cols=76 Identities=28% Similarity=0.312 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
....++|||.|||.++||+.|++-|..||.|..++|+. .+++++ .|.|.++++|+.|+..|++..|+|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45568999999999999999999999999999998843 365565 9999999999999999999999999999986
Q ss_pred c
Q 029810 96 S 96 (187)
Q Consensus 96 a 96 (187)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.13 E-value=5.7e-10 Score=83.58 Aligned_cols=87 Identities=21% Similarity=0.331 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccC---CeEE
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPR-TRISRGFAFVTMDGVEDAERCIKYLNQSVLE---GRYI 91 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~---g~~l 91 (187)
...-.||||.+||.++...+|..+|..|--.+.+.|..... ....+.+|||+|.+.++|++|+.+|||..|+ ++.|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34468999999999999999999999987666655543322 2233579999999999999999999999885 7789
Q ss_pred EEEeccCCCCC
Q 029810 92 TVERSRRKRPR 102 (187)
Q Consensus 92 ~v~~a~~~~~~ 102 (187)
+|++++.....
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 99999876544
No 79
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=6.9e-11 Score=100.82 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
.....+.|+|.|||..++..+|+++|..||.|..|.|+.....+.+.|||||+|-++.+|..|+.+|...-|.|+.|.++
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 34447899999999999999999999999999999999776667778999999999999999999999889999999999
Q ss_pred eccCC
Q 029810 95 RSRRK 99 (187)
Q Consensus 95 ~a~~~ 99 (187)
|++..
T Consensus 689 wA~~d 693 (725)
T KOG0110|consen 689 WAKSD 693 (725)
T ss_pred hhccc
Confidence 99854
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.09 E-value=5.3e-10 Score=88.46 Aligned_cols=83 Identities=25% Similarity=0.347 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS--------CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 87 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~ 87 (187)
...++.|||.|||.++|.+++.++|++||.|.. |+|..+.. |+.+|=|+|.|...++++.||+.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445678999999999999999999999998764 66666654 889999999999999999999999999999
Q ss_pred CeEEEEEeccCC
Q 029810 88 GRYITVERSRRK 99 (187)
Q Consensus 88 g~~l~v~~a~~~ 99 (187)
|+.|.|+.|+-+
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 999999988743
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.04 E-value=4.4e-10 Score=86.50 Aligned_cols=84 Identities=24% Similarity=0.315 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
...+...|||+|+...+|.++|...|+.||.|..+.|+.+..++++++|+||+|.+.+.++.|+. |++..|.+..|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 45567899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred eccCC
Q 029810 95 RSRRK 99 (187)
Q Consensus 95 ~a~~~ 99 (187)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87755
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.3e-10 Score=86.78 Aligned_cols=81 Identities=19% Similarity=0.139 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
..+...||||+|+...++++.|.++|.+-|+|..|.|..++.. ..+ ||||+|.++..+.-|++.|||..+.+..|.|+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-CCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 4556789999999999999999999999999999999887753 334 99999999999999999999999999888887
Q ss_pred ecc
Q 029810 95 RSR 97 (187)
Q Consensus 95 ~a~ 97 (187)
+-.
T Consensus 83 ~r~ 85 (267)
T KOG4454|consen 83 LRC 85 (267)
T ss_pred ccc
Confidence 643
No 83
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.95 E-value=2.8e-09 Score=84.83 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS--------CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 87 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~ 87 (187)
.....+|||.+||..+++++|.++|.+++.|.. |+|-++++|++.++-|.|.|.+...|++||..++++.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 556789999999999999999999999998753 677788899999999999999999999999999999999
Q ss_pred CeEEEEEeccCCC
Q 029810 88 GRYITVERSRRKR 100 (187)
Q Consensus 88 g~~l~v~~a~~~~ 100 (187)
+.+|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998887554
No 84
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.90 E-value=4.2e-09 Score=90.14 Aligned_cols=83 Identities=25% Similarity=0.320 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecC---CCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEP---RTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.+.+++|||+||++.++++.|...|..||+|..|+|+... +......|+||.|-+..+|++|++.|+|..|.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 5667899999999999999999999999999999988544 2333456899999999999999999999999999999
Q ss_pred EEeccC
Q 029810 93 VERSRR 98 (187)
Q Consensus 93 v~~a~~ 98 (187)
+.|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999864
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=1.7e-09 Score=90.32 Aligned_cols=72 Identities=31% Similarity=0.410 Sum_probs=64.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.-+..+|+|-|||..+++++|..+|+.||+|..|..... ..+.+||+|.+..+|++|+++|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345679999999999999999999999999999766443 367999999999999999999999999999887
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.87 E-value=1.1e-08 Score=84.47 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=67.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
+......|-|.+|||++|++||.+||+.++ |..+.+ ...+++..|-|||+|++++++++|++ .+...+..+-|+|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~--~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEI--PRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEE--eccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 345567788899999999999999999985 566444 44568889999999999999999999 67778888889997
Q ss_pred eccCC
Q 029810 95 RSRRK 99 (187)
Q Consensus 95 ~a~~~ 99 (187)
.+...
T Consensus 82 ~~~~~ 86 (510)
T KOG4211|consen 82 TAGGA 86 (510)
T ss_pred ccCCc
Confidence 77543
No 87
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=9.6e-09 Score=77.62 Aligned_cols=74 Identities=36% Similarity=0.486 Sum_probs=65.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
...+....+.|+|.+|+..+.+++|.+.|.++|.+..+.+. .+++||+|++.++|..||..|++..|.++.|
T Consensus 92 ~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l 163 (216)
T KOG0106|consen 92 YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRI 163 (216)
T ss_pred cCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCcee
Confidence 34556677899999999999999999999999999555442 5589999999999999999999999999999
Q ss_pred EE
Q 029810 92 TV 93 (187)
Q Consensus 92 ~v 93 (187)
++
T Consensus 164 ~~ 165 (216)
T KOG0106|consen 164 SV 165 (216)
T ss_pred ee
Confidence 99
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.82 E-value=2.9e-08 Score=80.35 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=72.4
Q ss_pred CCeEEEcCCCC-CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 19 GNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 19 ~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
+..|.|.||.. .+|.+.|..+|..||+|..|+|+.++ +.-|+|.|.+...|+.|+++|+|+.|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 67888999987 68999999999999999999999876 3479999999999999999999999999999999998
Q ss_pred CCCCCCC
Q 029810 98 RKRPRTP 104 (187)
Q Consensus 98 ~~~~~~~ 104 (187)
.....-+
T Consensus 372 H~~vqlp 378 (492)
T KOG1190|consen 372 HTNVQLP 378 (492)
T ss_pred CccccCC
Confidence 7655433
No 89
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.76 E-value=1.1e-08 Score=78.03 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=77.1
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
+-.+....||.+.|..+++.+.|-..|.+|-......++.+..|++++||+||.|.+++++..|+..|+|.-++...|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 34566789999999999999999999999998888999999999999999999999999999999999999999998887
Q ss_pred EeccC
Q 029810 94 ERSRR 98 (187)
Q Consensus 94 ~~a~~ 98 (187)
..+..
T Consensus 265 RkS~w 269 (290)
T KOG0226|consen 265 RKSEW 269 (290)
T ss_pred hhhhH
Confidence 65543
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=1.3e-08 Score=85.49 Aligned_cols=90 Identities=24% Similarity=0.327 Sum_probs=81.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
..........|||++||..+++.++++++..||.+....++.+..++-+++|||.+|.+......|+..|||..+.+++|
T Consensus 282 ~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~l 361 (500)
T KOG0120|consen 282 STDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKL 361 (500)
T ss_pred ccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCcee
Confidence 34445667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 029810 92 TVERSRRKRP 101 (187)
Q Consensus 92 ~v~~a~~~~~ 101 (187)
.|+.|.....
T Consensus 362 vvq~A~~g~~ 371 (500)
T KOG0120|consen 362 VVQRAIVGAS 371 (500)
T ss_pred Eeehhhccch
Confidence 9998875443
No 91
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.70 E-value=4.7e-08 Score=66.39 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=45.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC-----ccCCeEEEE
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS-----VLEGRYITV 93 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~-----~i~g~~l~v 93 (187)
++.|+|.+++..++.++|+++|.+||.|..|.+.... ..|||.|.+.+.|++|++++... .|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3678999999999999999999999999999887543 37999999999999999876543 567777777
Q ss_pred Eec
Q 029810 94 ERS 96 (187)
Q Consensus 94 ~~a 96 (187)
+..
T Consensus 75 ~vL 77 (105)
T PF08777_consen 75 EVL 77 (105)
T ss_dssp E--
T ss_pred EEC
Confidence 654
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.66 E-value=1.9e-07 Score=59.80 Aligned_cols=69 Identities=30% Similarity=0.308 Sum_probs=47.6
Q ss_pred CeEEEcCCCCCCcHHH----HHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 20 NTLYVTGLSTRVTERD----LEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~----L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
+.|+|.|||.+.+... |++++.-+| .|..|. .+.|+|.|.+.+.|+.|.+.|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999888765 566666776 566552 3589999999999999999999999999999999
Q ss_pred eccC
Q 029810 95 RSRR 98 (187)
Q Consensus 95 ~a~~ 98 (187)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9753
No 93
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.66 E-value=7.7e-08 Score=79.53 Aligned_cols=80 Identities=26% Similarity=0.322 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
.....|-|.+||+.||++||.+||+..-.|....++.....+.+.|.|||.|++.+.|++||. -|...|.-+-|+|-.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 466889999999999999999999988766663433334457788999999999999999998 5677888888988765
Q ss_pred c
Q 029810 97 R 97 (187)
Q Consensus 97 ~ 97 (187)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 94
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.62 E-value=1.1e-07 Score=75.69 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=67.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCC--ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEG--KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
..+||+||-|++|++||.+.+...| .|.+++++.+..+|+++|||+|...+.+..++.|+.|..++|.|+.-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 5789999999999999999998777 57778888888999999999999999999999999999999999866554
No 95
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.61 E-value=4.5e-08 Score=73.56 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=55.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 87 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~ 87 (187)
.....+|||.||..+++|++|+.+|+.|-....++|... .| ...|||+|++.+.|..||..|+|..|.
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 345679999999999999999999999986655555422 22 458999999999999999999987653
No 96
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.55 E-value=3.8e-07 Score=68.68 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=68.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CeEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GRYITV 93 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~-g~~l~v 93 (187)
...++.++|+.|||.+++.+.|..+|.+|.....|.++... .+.|||+|.+...|..|...|++..|- ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 35678899999999999999999999999988888887543 569999999999999999999998876 778888
Q ss_pred Eecc
Q 029810 94 ERSR 97 (187)
Q Consensus 94 ~~a~ 97 (187)
.+++
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 8764
No 97
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.45 E-value=9e-08 Score=80.03 Aligned_cols=85 Identities=27% Similarity=0.368 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
+....+||+--|+..++.-+|.+||+.+|.|..|.|+.|..++.++|.|||+|.+.+.+..||. |.|..+.|.+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 3445788888889999999999999999999999999999999999999999999999999996 999999999999988
Q ss_pred ccCCCC
Q 029810 96 SRRKRP 101 (187)
Q Consensus 96 a~~~~~ 101 (187)
....+.
T Consensus 255 sEaekn 260 (549)
T KOG0147|consen 255 SEAEKN 260 (549)
T ss_pred cHHHHH
Confidence 765443
No 98
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.43 E-value=1.9e-06 Score=69.36 Aligned_cols=82 Identities=27% Similarity=0.323 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCC-CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 14 ETGNPGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
....++..++|.+|.. .+.-+.|..+|..||.|..|++++.+ .+.|.|++.+..+.+.|+..||+..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 4456789999999988 56678899999999999999998765 57899999999999999999999999999999
Q ss_pred EEeccCCC
Q 029810 93 VERSRRKR 100 (187)
Q Consensus 93 v~~a~~~~ 100 (187)
|.+++...
T Consensus 357 v~~SkQ~~ 364 (494)
T KOG1456|consen 357 VCVSKQNF 364 (494)
T ss_pred Eeeccccc
Confidence 99988543
No 99
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.40 E-value=3.6e-07 Score=72.66 Aligned_cols=83 Identities=24% Similarity=0.456 Sum_probs=74.2
Q ss_pred CCCeEE-EcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 18 PGNTLY-VTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 18 ~~~~l~-V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
...++| |.+|+..+++++|+..|..+|.|..+.+..+..++..++||||.|.+...+..++.. +...|.+..+.|...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 999999999999999999999999999999999999999999999999999999886 788899999999988
Q ss_pred cCCCC
Q 029810 97 RRKRP 101 (187)
Q Consensus 97 ~~~~~ 101 (187)
.+...
T Consensus 262 ~~~~~ 266 (285)
T KOG4210|consen 262 EPRPK 266 (285)
T ss_pred CCCcc
Confidence 76543
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=2.9e-06 Score=71.56 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCCCCcH------HHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-Ce
Q 029810 17 NPGNTLYVTGLSTRVTE------RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GR 89 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~------~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~-g~ 89 (187)
.-.+.|+|.|+|.--.. .-|..+|+++|+|..+.++.+..+| .+||.|++|++..+|+.|++.|||+.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 55678999999873322 3477889999999999999887766 7999999999999999999999999874 67
Q ss_pred EEEEEecc
Q 029810 90 YITVERSR 97 (187)
Q Consensus 90 ~l~v~~a~ 97 (187)
++.|..-+
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 77776543
No 101
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.23 E-value=8e-07 Score=68.07 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=61.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCC--------CCcc----eEEEEEecCHHHHHHHHHHhCCCc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRT--------RISR----GFAFVTMDGVEDAERCIKYLNQSV 85 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~--------~~~~----g~afV~f~~~~~a~~ai~~l~g~~ 85 (187)
..-.|||++||+.+...-|+++|.+||+|-.|.|.....+ +.+. --++|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988755433 2222 237899999999999999999999
Q ss_pred cCCeE
Q 029810 86 LEGRY 90 (187)
Q Consensus 86 i~g~~ 90 (187)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.23 E-value=3.7e-06 Score=66.96 Aligned_cols=80 Identities=25% Similarity=0.485 Sum_probs=62.4
Q ss_pred CCeEEEcCCCCCCcHHH----H--HHHhhcCCceeEEEEeecCCCC-CcceE--EEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 19 GNTLYVTGLSTRVTERD----L--EKHFSKEGKVASCFLVVEPRTR-ISRGF--AFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~----L--~~~f~~~G~i~~~~i~~~~~~~-~~~g~--afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
-+-|||-+|++.+..++ | .++|.+||.|..|.|.+..... ...+. .||+|.+.++|..||.+.+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35688999999776665 3 6789999999998886433111 11122 49999999999999999999999999
Q ss_pred EEEEEeccC
Q 029810 90 YITVERSRR 98 (187)
Q Consensus 90 ~l~v~~a~~ 98 (187)
.|+..+...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988764
No 103
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.19 E-value=2.1e-05 Score=57.83 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=57.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 87 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~ 87 (187)
......|.|.+||+..+|+||++.+.+-|.|+...+..+ +++.|+|...++++-||.+|+...+.
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 344578999999999999999999999999999998765 38999999999999999999887654
No 104
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.19 E-value=5.9e-06 Score=71.25 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=66.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
+.|-+.|+|++++-+||.+||..|-.+-.-.++.-.+.|...|-|.|.|++.++|..|...|++..|..++|.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3777899999999999999999998776655555556789999999999999999999999999999999988764
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.18 E-value=1.3e-05 Score=64.59 Aligned_cols=83 Identities=27% Similarity=0.296 Sum_probs=66.9
Q ss_pred CCCCCCCCeEEEcCCCC--CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-C-
Q 029810 13 TETGNPGNTLYVTGLST--RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-G- 88 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~--~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~-g- 88 (187)
.+...++..|.+.=|.+ .+|.+.|..+....|+|..|.|++.. ---|.|||++.+.|++|.++|||..|. |
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEEeechhHHHHHHHhhcccccccccc
Confidence 45556666666665544 78999999999999999999888652 226999999999999999999999875 3
Q ss_pred eEEEEEeccCCC
Q 029810 89 RYITVERSRRKR 100 (187)
Q Consensus 89 ~~l~v~~a~~~~ 100 (187)
.+|+|++|++.+
T Consensus 189 CTLKIeyAkP~r 200 (494)
T KOG1456|consen 189 CTLKIEYAKPTR 200 (494)
T ss_pred eeEEEEecCcce
Confidence 489999999754
No 106
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.15 E-value=3.7e-06 Score=67.93 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCc-eeE--EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGK-VAS--CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~-i~~--~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.....|-+.+||...+.+||.+||..|.. |.. |+|+.+. .|...|-|||+|.+.++|.+|+...+++....+.|+|
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 33678899999999999999999999874 444 7777775 4888899999999999999999999988888888888
Q ss_pred Eecc
Q 029810 94 ERSR 97 (187)
Q Consensus 94 ~~a~ 97 (187)
-.+.
T Consensus 357 fp~S 360 (508)
T KOG1365|consen 357 FPCS 360 (508)
T ss_pred eecc
Confidence 6554
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=9.3e-06 Score=67.86 Aligned_cols=69 Identities=20% Similarity=0.292 Sum_probs=63.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhh-cCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFS-KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKY 80 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 80 (187)
.+.+.++..||||++||..++.++|..+|. -||.|..+-|-+|++-+.++|-|=|+|.+..+-.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 456778899999999999999999999998 899999999999988899999999999999999999883
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.10 E-value=8.5e-06 Score=48.29 Aligned_cols=52 Identities=17% Similarity=0.443 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai 78 (187)
+.|-|.+.+....+. |...|..||+|..+.+... ..+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 567889999877654 5558889999999888621 459999999999999985
No 109
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.08 E-value=6.9e-06 Score=67.18 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeec---CC--CCC--------cceEEEEEecCHHHHHH
Q 029810 10 RGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVE---PR--TRI--------SRGFAFVTMDGVEDAER 76 (187)
Q Consensus 10 ~~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~---~~--~~~--------~~g~afV~f~~~~~a~~ 76 (187)
..-..+..+..+|.+.|||.+-.-+.|.++|..+|.|+.|.|+.. .. .+. .+-+|||+|+..+.|.+
T Consensus 222 p~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K 301 (484)
T KOG1855|consen 222 PEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK 301 (484)
T ss_pred CCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence 334455668899999999998888999999999999999999865 21 111 14579999999999999
Q ss_pred HHHHhCCC
Q 029810 77 CIKYLNQS 84 (187)
Q Consensus 77 ai~~l~g~ 84 (187)
|.+.|+..
T Consensus 302 A~e~~~~e 309 (484)
T KOG1855|consen 302 ARELLNPE 309 (484)
T ss_pred HHHhhchh
Confidence 99988644
No 110
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.06 E-value=1.3e-05 Score=65.40 Aligned_cols=78 Identities=24% Similarity=0.382 Sum_probs=64.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe-EEEEEe
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR-YITVER 95 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~-~l~v~~ 95 (187)
++..+|.+.|||..++|++|+++|..-|...+...... +...+|++.+++.|+|..|+-.+|.+.+.+. -|.|.+
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~----kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ----KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC----CCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 56779999999999999999999998886654433322 2245999999999999999999999988655 899999
Q ss_pred ccC
Q 029810 96 SRR 98 (187)
Q Consensus 96 a~~ 98 (187)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 874
No 111
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=1.4e-05 Score=67.43 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=53.0
Q ss_pred HHHHHHhhcCCceeEEEEeecC---CCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 34 RDLEKHFSKEGKVASCFLVVEP---RTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 34 ~~L~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
++|+..+.+||.|..|.|+.+. ...-..|..||+|++.++++.|+++|+|.+|.+++|.+.|..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 3566677899999999998662 222335789999999999999999999999999999988754
No 112
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.04 E-value=2.7e-05 Score=52.23 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=51.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEE-EeecC------CCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCF-LVVEP------RTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~-i~~~~------~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
..+-|.|-+.|+.. ...|.+.|++||+|.+.. +..+. ..-....|..|.|+++.+|++||. .||..|.|..
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 45668888999884 466888999999998764 10000 001124599999999999999999 8999998864
Q ss_pred -EEEEecc
Q 029810 91 -ITVERSR 97 (187)
Q Consensus 91 -l~v~~a~ 97 (187)
|-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4566654
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=98.00 E-value=4.1e-05 Score=54.48 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=52.6
Q ss_pred CCCCCCeEEEcCCC----C--CCcH---HHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 029810 15 TGNPGNTLYVTGLS----T--RVTE---RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 85 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp----~--~~t~---~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~ 85 (187)
..++..||.|.=+. . ...+ .+|.+.|..||++.-+.+..+ .-+|+|.+-+.|.+|+. |+|.+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcE
Confidence 34556677665444 1 1222 367888999999988887633 58999999999999999 99999
Q ss_pred cCCeEEEEEeccCCC
Q 029810 86 LEGRYITVERSRRKR 100 (187)
Q Consensus 86 i~g~~l~v~~a~~~~ 100 (187)
|+|+.|+|.+..+..
T Consensus 94 v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 94 VNGRTLKIRLKTPDW 108 (146)
T ss_dssp ETTEEEEEEE-----
T ss_pred ECCEEEEEEeCCccH
Confidence 999999999877643
No 114
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.95 E-value=4.1e-05 Score=61.18 Aligned_cols=79 Identities=23% Similarity=0.360 Sum_probs=63.0
Q ss_pred CCCCeEEEcCCCC----CCc-------HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 029810 17 NPGNTLYVTGLST----RVT-------ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 85 (187)
Q Consensus 17 ~~~~~l~V~~Lp~----~~t-------~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~ 85 (187)
....+|.|.||=. ..+ +++|.+...+||.|..|.|.- .++.|.+-|.|.+.++|+.||+.|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3457888888732 222 356777789999999998863 3347899999999999999999999999
Q ss_pred cCCeEEEEEeccCC
Q 029810 86 LEGRYITVERSRRK 99 (187)
Q Consensus 86 i~g~~l~v~~a~~~ 99 (187)
|.|++|+..+...+
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999999876543
No 115
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.93 E-value=4.5e-06 Score=64.06 Aligned_cols=64 Identities=25% Similarity=0.258 Sum_probs=52.5
Q ss_pred HHHHHHhh-cCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccC
Q 029810 34 RDLEKHFS-KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 98 (187)
Q Consensus 34 ~~L~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 98 (187)
++|...|+ +||+|.++.|..+-. -.-.|-++|.|..+++|++|+..||+..|.|++|.+++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45555565 999999987765432 34467899999999999999999999999999999998753
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=6e-05 Score=63.12 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=51.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecC---CCCCcce---EEEEEecCHHHHHHHHHHhC
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEP---RTRISRG---FAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~---~~~~~~g---~afV~f~~~~~a~~ai~~l~ 82 (187)
...-..+|||++||++++|+.|...|..||.|. |.++... .--.++| |+|+.|+++..+.+.|.++.
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 345568999999999999999999999999865 4554211 1122356 99999999999888777654
No 117
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.81 E-value=2.1e-05 Score=66.89 Aligned_cols=77 Identities=18% Similarity=0.308 Sum_probs=63.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhh-cCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc---CCeEE
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFS-KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL---EGRYI 91 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i---~g~~l 91 (187)
....+.|+|.||-.-+|.-+|++++. ..|.|..++| |. .+-.|||.|.+.++|.+.+.+|||..| +.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 45679999999999999999999998 4556666633 22 256899999999999999999999876 56788
Q ss_pred EEEeccC
Q 029810 92 TVERSRR 98 (187)
Q Consensus 92 ~v~~a~~ 98 (187)
.|.|...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 8888754
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.67 E-value=5.5e-05 Score=67.09 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=68.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC--eEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG--RYIT 92 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g--~~l~ 92 (187)
...+++.+||++|..++....|..+|..||.|..|.+-.. .-||+|.|++...|++|++.|.+..|.+ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4567789999999999999999999999999999887433 4599999999999999999999999875 5688
Q ss_pred EEeccC
Q 029810 93 VERSRR 98 (187)
Q Consensus 93 v~~a~~ 98 (187)
|.++..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 888764
No 119
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.63 E-value=0.0004 Score=42.24 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcC---CceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKE---GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~---G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 81 (187)
..+|+|.||. +++.++|+.+|..| .....|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4689999985 57778999999988 235678887664 5899999999999999865
No 120
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.63 E-value=0.00043 Score=44.46 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=42.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
-....+|+ +|.++...||.++|+.||.|. |.++.+ .-|||...+.+.|..|+..+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 34566676 999999999999999999876 444433 2699999999999999998764
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.55 E-value=0.00028 Score=55.41 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=51.9
Q ss_pred HHHHHHHhhcCCceeEEEEeecCCCCCc-ceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 33 ERDLEKHFSKEGKVASCFLVVEPRTRIS-RGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 33 ~~~L~~~f~~~G~i~~~~i~~~~~~~~~-~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
++++++.+++||.|..|.|+.....-.. .--.||+|+..++|.+|+-.|||..|.|+.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 3568889999999999988766421111 1247999999999999999999999999999887754
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.42 E-value=0.00012 Score=63.58 Aligned_cols=83 Identities=19% Similarity=0.132 Sum_probs=66.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
-+...+..|||..||..+++.++.++|...-.|++..++..--++...+.|||+|..++++.+|+..-+.+-+..+.|.|
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 45677899999999999999999999998888877433333345667789999999988888888766677777788888
Q ss_pred Eec
Q 029810 94 ERS 96 (187)
Q Consensus 94 ~~a 96 (187)
.-.
T Consensus 509 ~si 511 (944)
T KOG4307|consen 509 DSI 511 (944)
T ss_pred ech
Confidence 654
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.41 E-value=0.00022 Score=58.07 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=57.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPR---TRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
..|.|.||.+.++.+++..||.-.|+|..+.|+.+.. .....-.|||-|.+...+..|.. |.+..|-+..|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 3899999999999999999999999999998875321 11223479999999998888877 66665555555554
No 124
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.41 E-value=0.00013 Score=59.91 Aligned_cols=76 Identities=34% Similarity=0.459 Sum_probs=59.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC-ccCCeEEEEEeccC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS-VLEGRYITVERSRR 98 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~-~i~g~~l~v~~a~~ 98 (187)
+.+||+||.+.++..+|..+|..--.-..-.++.. .+|+||.+.+...|.+|++.++++ ++.|+.+.|+.+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 47899999999999999999975421111111111 469999999999999999999987 68999999998766
Q ss_pred CCC
Q 029810 99 KRP 101 (187)
Q Consensus 99 ~~~ 101 (187)
+..
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 543
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.39 E-value=0.00014 Score=64.25 Aligned_cols=80 Identities=23% Similarity=0.180 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccC
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 98 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 98 (187)
...|||.|+|+..|.++|+.++..+|.+..+.++..+ .|+++|.|||.|.++.+|..++...+...+....+.|+.+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4678999999999999999999999999999877665 488899999999999999999998888888888888888766
Q ss_pred C
Q 029810 99 K 99 (187)
Q Consensus 99 ~ 99 (187)
.
T Consensus 815 ~ 815 (881)
T KOG0128|consen 815 E 815 (881)
T ss_pred c
Confidence 3
No 126
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.33 E-value=0.00094 Score=54.38 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=53.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcC---C-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKE---G-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~---G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
-.|-+.+||.++++.++.+||.+- + .+..|-++.. ..++..|-|||.|+.+++|+.||.+ |...|.-+.|++-.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 455668999999999999999632 2 2333433333 3477889999999999999999983 44455555555543
Q ss_pred c
Q 029810 96 S 96 (187)
Q Consensus 96 a 96 (187)
+
T Consensus 240 S 240 (508)
T KOG1365|consen 240 S 240 (508)
T ss_pred H
Confidence 3
No 127
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.00043 Score=58.59 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=46.7
Q ss_pred CCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC----CeEEEEEeccCC
Q 029810 43 EGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE----GRYITVERSRRK 99 (187)
Q Consensus 43 ~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~----g~~l~v~~a~~~ 99 (187)
.|.-..+.++.|..+.++.|||||.|.+.+++..+.+++||+.|. .+.+.|.||+-+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 455566778888888899999999999999999999999998653 456678887654
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.18 E-value=2.1e-05 Score=69.29 Aligned_cols=68 Identities=24% Similarity=0.430 Sum_probs=58.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 87 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~ 87 (187)
.++||.||+..+.+.+|...|..++.|..+.+.....++..+|+|||+|..+++|.+||...+...+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 57899999999999999999999998888777655667888999999999999999999865554444
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.14 E-value=0.00093 Score=49.60 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=51.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhc-CCce---eEEEEeecCC--CCCcceEEEEEecCHHHHHHHHHHhCCCccCC-
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSK-EGKV---ASCFLVVEPR--TRISRGFAFVTMDGVEDAERCIKYLNQSVLEG- 88 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~-~G~i---~~~~i~~~~~--~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g- 88 (187)
....++|.|.+||+.+|++++.+.+.. ++.. ..+.-..... ......-|||.|.+.+++...+..++|+.|.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999887776 6654 2332112211 11123469999999999999999999986632
Q ss_pred ----eEEEEEeccCC
Q 029810 89 ----RYITVERSRRK 99 (187)
Q Consensus 89 ----~~l~v~~a~~~ 99 (187)
....|++|.-+
T Consensus 84 kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQ 98 (176)
T ss_dssp TS-EEEEEEEE-SS-
T ss_pred CCCCcceeEEEcchh
Confidence 24567777643
No 130
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.04 E-value=0.0054 Score=43.48 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=56.5
Q ss_pred CCCCCCCCeEEEcCCCCCCc----HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029810 13 TETGNPGNTLYVTGLSTRVT----ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 88 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t----~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g 88 (187)
+..+++-.+|.|.=|..++. ...|...++.||+|..|.++ | +.-|.|.|.+..+|-.|+.+++. ...|
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pg 151 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPG 151 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCC
Confidence 34456667787865555443 34456667899999999875 2 44799999999999999998876 5667
Q ss_pred eEEEEEecc
Q 029810 89 RYITVERSR 97 (187)
Q Consensus 89 ~~l~v~~a~ 97 (187)
..+.+.|-.
T Consensus 152 tm~qCsWqq 160 (166)
T PF15023_consen 152 TMFQCSWQQ 160 (166)
T ss_pred ceEEeeccc
Confidence 777777743
No 131
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.01 E-value=0.001 Score=51.40 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=60.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC----ccCCeEEEEEe
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS----VLEGRYITVER 95 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~----~i~g~~l~v~~ 95 (187)
..|||.||...++.+.|.+.|..||+|....++.|. .++..+-++|+|+..-.|.+|+..+.-. ++.+..+.|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 689999999999999999999999999887666554 3667788999999999999999877432 44455555544
No 132
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.99 E-value=0.0056 Score=38.71 Aligned_cols=67 Identities=27% Similarity=0.472 Sum_probs=40.2
Q ss_pred eEEEc-CCCCCCcHHHHHHHhhcCC-----ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 21 TLYVT-GLSTRVTERDLEKHFSKEG-----KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 21 ~l~V~-~Lp~~~t~~~L~~~f~~~G-----~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
++||. +--..++..+|..++...+ .|-.|.|.. .|+||+... +.|+.++..|++..+.|+.|.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 56662 2234788899999987764 455677753 389999864 48899999999999999999998
Q ss_pred ec
Q 029810 95 RS 96 (187)
Q Consensus 95 ~a 96 (187)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 133
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.99 E-value=0.0013 Score=55.82 Aligned_cols=71 Identities=18% Similarity=0.291 Sum_probs=56.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhc--CCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--CccCCeEEE
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSK--EGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ--SVLEGRYIT 92 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g--~~i~g~~l~ 92 (187)
-.-+.|+|.-||..+..++|+.||.. +-.++.|.+..+. -=||+|++..||+.|.+.|.. ++|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34577888999999999999999964 6678888876553 369999999999999998864 367777765
Q ss_pred EE
Q 029810 93 VE 94 (187)
Q Consensus 93 v~ 94 (187)
..
T Consensus 246 AR 247 (684)
T KOG2591|consen 246 AR 247 (684)
T ss_pred hh
Confidence 43
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.91 E-value=0.00021 Score=63.56 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=67.3
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.++...+.+||++||+..+++.+|...|..+|.|..|.|....- ++-..|+||.|.+...+-.|+..+.+..|..-.+.
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 45566788999999999999999999999999999998875532 22245999999999999999988988877655555
Q ss_pred EEec
Q 029810 93 VERS 96 (187)
Q Consensus 93 v~~a 96 (187)
+.+.
T Consensus 445 ~glG 448 (975)
T KOG0112|consen 445 IGLG 448 (975)
T ss_pred cccc
Confidence 5554
No 135
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.91 E-value=0.02 Score=39.07 Aligned_cols=70 Identities=10% Similarity=0.043 Sum_probs=49.0
Q ss_pred CCCCeEE-EcCCCCCCcHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029810 17 NPGNTLY-VTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 88 (187)
Q Consensus 17 ~~~~~l~-V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g 88 (187)
...+.|. +...|..++.++|..+.+.+- .|..+.|+.+... +.-.++|.|.+.++|.+..+.+||+.++.
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3334444 444555666667766666654 5667888876532 34578999999999999999999997653
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.85 E-value=0.0004 Score=55.53 Aligned_cols=81 Identities=25% Similarity=0.422 Sum_probs=61.6
Q ss_pred CCeEEEcCCCCCCcHHHH---HHHhhcCCceeEEEEeecCC--CC-CcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 19 GNTLYVTGLSTRVTERDL---EKHFSKEGKVASCFLVVEPR--TR-ISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L---~~~f~~~G~i~~~~i~~~~~--~~-~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.+-+||-+|+..+..+++ .+.|.+||.|..|.+..+.. .. ....-++|+|+..++|..||...+|..+.++.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 356788889887665554 35688999999998876551 11 1122489999999999999999999999999888
Q ss_pred EEeccCC
Q 029810 93 VERSRRK 99 (187)
Q Consensus 93 v~~a~~~ 99 (187)
+.+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7776654
No 137
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.82 E-value=0.049 Score=48.34 Aligned_cols=70 Identities=9% Similarity=0.155 Sum_probs=51.2
Q ss_pred CeEEEc-CCCCCCcHHHHHHHhhcCCce-----eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 20 NTLYVT-GLSTRVTERDLEKHFSKEGKV-----ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 20 ~~l~V~-~Lp~~~t~~~L~~~f~~~G~i-----~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
..+||. +-...++..+|..++..-+.| -.|.|. ..|.||+.. .+.|...+..|++..|.|+.|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcC-hhhHHHHHHHhccccccCCceEE
Confidence 345552 223478888998888766644 345554 238999985 45688899999999999999999
Q ss_pred EeccC
Q 029810 94 ERSRR 98 (187)
Q Consensus 94 ~~a~~ 98 (187)
+.+..
T Consensus 558 ~~~~~ 562 (629)
T PRK11634 558 QLLGD 562 (629)
T ss_pred EECCC
Confidence 98753
No 138
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.36 E-value=0.0019 Score=53.85 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=59.5
Q ss_pred CCeEEEcCCCCCC-cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 19 GNTLYVTGLSTRV-TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 19 ~~~l~V~~Lp~~~-t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
.+.|-|.-+|..+ +-++|...|.+||+|..|.|-+. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|-+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 4455566666644 56889999999999999988544 3379999999999988877 78999999999999987
Q ss_pred C
Q 029810 98 R 98 (187)
Q Consensus 98 ~ 98 (187)
+
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 6
No 139
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.36 E-value=0.018 Score=45.64 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=51.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE-EEEEe
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY-ITVER 95 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~-l~v~~ 95 (187)
.+=|-|-++|+... .-|..+|++||+|++.... .+-.|-+|.|.+..+|++||. .+|..|+|.. |-|+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeee
Confidence 34455567777543 4578899999999887654 124599999999999999999 7898888764 34444
No 140
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.08 E-value=0.019 Score=42.88 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=45.2
Q ss_pred cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC--CCccCCeEEEEEeccC
Q 029810 32 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN--QSVLEGRYITVERSRR 98 (187)
Q Consensus 32 t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~--g~~i~g~~l~v~~a~~ 98 (187)
..+.|+++|..|+.+..+.++... +=..|.|.+.++|++|...|+ +..|.|..|.|-++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999998888776442 358999999999999999999 8899999999988754
No 141
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.96 E-value=0.001 Score=54.21 Aligned_cols=73 Identities=8% Similarity=0.061 Sum_probs=56.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
.+|+|++|+..+...++.++|..+|+|....|.... ...+|.|+|........|+. ++|..+.-+...+...+
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIK 224 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcC
Confidence 678999999999999999999999999988776433 24578899998888888888 67777664444433333
No 142
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.91 E-value=0.0054 Score=53.17 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=62.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.+.++..+|||+||...+..+-++.++..+|.|..+.... |+|.+|..+..+..|+..|+...++++.+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 4556778999999999999999999999999888765532 8999999999999999999998998887766
Q ss_pred Ee
Q 029810 94 ER 95 (187)
Q Consensus 94 ~~ 95 (187)
..
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 54
No 143
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.85 E-value=0.06 Score=33.21 Aligned_cols=55 Identities=20% Similarity=0.310 Sum_probs=43.0
Q ss_pred CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 30 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 30 ~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.++-++|+..|..|.- ..|..++ | | -||.|.+.++|++|....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 6778999999999973 2333343 2 2 689999999999999999999888777654
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.79 E-value=0.0092 Score=53.24 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=62.3
Q ss_pred EEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc--CCeEEEEEeccCCC
Q 029810 23 YVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL--EGRYITVERSRRKR 100 (187)
Q Consensus 23 ~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i--~g~~l~v~~a~~~~ 100 (187)
++.|.+-.++-..|..+|.+||.|..++.+.+. ..|.|+|...+.|..|+.+|+|+++ .|-+.+|.+|+..+
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 344445556667899999999999999887663 3899999999999999999999864 57789999998776
Q ss_pred CCCCC
Q 029810 101 PRTPT 105 (187)
Q Consensus 101 ~~~~~ 105 (187)
...+.
T Consensus 376 ~~ep~ 380 (1007)
T KOG4574|consen 376 MYEPP 380 (1007)
T ss_pred cccCC
Confidence 55443
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.72 E-value=0.053 Score=45.30 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=57.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 88 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g 88 (187)
++.|+|-.+|..++-.||..|+..+- .|..+.|+.+.... .=.++|.|.+.++|....+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 88999999999999999999998665 67889888864322 3368999999999999999999998764
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.44 E-value=0.01 Score=47.45 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
..+++|++++.+.+.+.++..++..+|.+..+.+........+++++.|.|+..+.+..|+.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 56899999999999999999999999988777666655667789999999999999999999554456665555544443
No 147
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=0.26 Score=42.60 Aligned_cols=81 Identities=20% Similarity=0.191 Sum_probs=60.2
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHhhcC----CceeEEEEeecC----------CCCC---------------------
Q 029810 16 GNPGNTLYVTGLST-RVTERDLEKHFSKE----GKVASCFLVVEP----------RTRI--------------------- 59 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~-~~t~~~L~~~f~~~----G~i~~~~i~~~~----------~~~~--------------------- 59 (187)
...++.|-|.|+.| .+...+|.-+|..| |.|..|.|.... ..|-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678999999999 67889999998766 478888775211 1111
Q ss_pred ----------------cceEEEEEecCHHHHHHHHHHhCCCccCCe--EEEEEec
Q 029810 60 ----------------SRGFAFVTMDGVEDAERCIKYLNQSVLEGR--YITVERS 96 (187)
Q Consensus 60 ----------------~~g~afV~f~~~~~a~~ai~~l~g~~i~g~--~l~v~~a 96 (187)
..=||.|+|.+++.|.++.+.++|.+|... .|.+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 123799999999999999999999988755 4444443
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.86 E-value=0.0037 Score=51.62 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=63.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEe-ecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLV-VEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~-~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
.+++-|.|||+...|+.|..++.+||.+..|..+ .+.+ ....-|+|...+.+..||.+|++..+....++|.|..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 4568899999999999999999999999988653 3332 2245678899999999999999999999999998865
Q ss_pred CC
Q 029810 98 RK 99 (187)
Q Consensus 98 ~~ 99 (187)
..
T Consensus 156 de 157 (584)
T KOG2193|consen 156 DE 157 (584)
T ss_pred hh
Confidence 43
No 149
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=93.33 E-value=0.19 Score=31.08 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=46.8
Q ss_pred HHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 34 RDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 34 ~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
++|++.|...| ++..+..+....+..+...-||+.....+... .|+=+.|+++.|.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888898888 78888888888777777888999876654444 455568899999998754
No 150
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=93.13 E-value=0.23 Score=30.79 Aligned_cols=62 Identities=18% Similarity=0.337 Sum_probs=45.9
Q ss_pred HHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccC
Q 029810 34 RDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 98 (187)
Q Consensus 34 ~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 98 (187)
++|.+.|...| +|..|.-+....+.......||+++...+... .++=..|++..|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 56788888888 77888777777667777889999887655333 3445678999999987654
No 151
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=92.60 E-value=0.55 Score=37.28 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=37.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCce-eEEEEeecCCCCCcceEEEEEecCH
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKV-ASCFLVVEPRTRISRGFAFVTMDGV 71 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~ 71 (187)
...+-|+|+||+.++...||+..+.+.+.+ ..+.|.- ..+-||++|.+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 345679999999999999999999988744 3455532 245799999764
No 152
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=0.46 Score=39.39 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=46.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCc-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGK-VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKY 80 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 80 (187)
+-.+.|-|.++|.....+||..+|+.|+. -..|.|+.+. .||..|.+...|..||..
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 34578889999999999999999999974 3456666443 799999999999999884
No 153
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.15 E-value=0.11 Score=41.06 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=30.0
Q ss_pred CCCCCCeEEEcCCCCC------------CcHHHHHHHhhcCCceeEEEEee
Q 029810 15 TGNPGNTLYVTGLSTR------------VTERDLEKHFSKEGKVASCFLVV 53 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~------------~t~~~L~~~f~~~G~i~~~~i~~ 53 (187)
+.....|||+.+||.. .+++-|...|..||.|..|.|+.
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3444578999999863 24567999999999999998863
No 154
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=90.37 E-value=6.6 Score=29.96 Aligned_cols=59 Identities=17% Similarity=0.059 Sum_probs=35.0
Q ss_pred CcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH--HhCCCccCCe
Q 029810 31 VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK--YLNQSVLEGR 89 (187)
Q Consensus 31 ~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~--~l~g~~i~g~ 89 (187)
-+---|.+-+...|.|---.-....+..-+.-+-|-.=.+.++|++||. .|+|.+|--+
T Consensus 28 d~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 28 DDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred HHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3445566667777765432222222222223356666678999999996 6889887543
No 155
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=89.55 E-value=0.37 Score=35.67 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=54.0
Q ss_pred CCCCeEEEcCCCCCCcH-----HHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe-E
Q 029810 17 NPGNTLYVTGLSTRVTE-----RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR-Y 90 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~-----~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~-~ 90 (187)
+-.+++++.+|+..+-. .....+|.+|.+.....++.. .+..-|.|.+++.|..|..+++...|.++ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 34467788888875422 234566777766665555432 44678999999999999999999999988 6
Q ss_pred EEEEeccC
Q 029810 91 ITVERSRR 98 (187)
Q Consensus 91 l~v~~a~~ 98 (187)
++.-++.+
T Consensus 82 ~k~yfaQ~ 89 (193)
T KOG4019|consen 82 LKLYFAQP 89 (193)
T ss_pred EEEEEccC
Confidence 66666654
No 156
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=84.78 E-value=0.12 Score=44.45 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=53.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
-..++|||.||+++++-++|..++..+-.+..+.+-.........-+.+|+|.---....|+.+||+..+...
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 3457899999999999999999999887776666554433333455788999876677777777877655433
No 157
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=84.12 E-value=2.5 Score=29.11 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=29.0
Q ss_pred eEEEcCCCCCC---------cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC-HHHHHHHHH
Q 029810 21 TLYVTGLSTRV---------TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG-VEDAERCIK 79 (187)
Q Consensus 21 ~l~V~~Lp~~~---------t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~-~~~a~~ai~ 79 (187)
++.|.|++... +.++|.+.|..|..++ +..+.+.. -..++++|+|.. -.-...|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 56677886543 4578999999998875 44445542 357899999975 333333443
No 158
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=80.15 E-value=6.6 Score=32.97 Aligned_cols=77 Identities=25% Similarity=0.290 Sum_probs=55.0
Q ss_pred CCCCCCCCeEEEcCCCC-CCcHHHHHHHhhcC----CceeEEEEeecC--------------------------------
Q 029810 13 TETGNPGNTLYVTGLST-RVTERDLEKHFSKE----GKVASCFLVVEP-------------------------------- 55 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~-~~t~~~L~~~f~~~----G~i~~~~i~~~~-------------------------------- 55 (187)
.+..+++..|-|-||.| .+...+|..+|+.| |.|..|.|....
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 34467788999999999 67888999888765 467766653110
Q ss_pred ----CCCCc-----------------------------ceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 56 ----RTRIS-----------------------------RGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 56 ----~~~~~-----------------------------~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
.+... .=||.|+|.+.+.+..+...++|.++...
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc
Confidence 00000 22689999999999999999999877543
No 159
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=79.52 E-value=2.3 Score=35.10 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=47.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCc-eeEEEEeecCCC--CCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGK-VASCFLVVEPRT--RISRGFAFVTMDGVEDAERCIKYLNQSVL 86 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~-i~~~~i~~~~~~--~~~~g~afV~f~~~~~a~~ai~~l~g~~i 86 (187)
.-..|.|.+||+.+++++|.+.+..|-. |....+...... ......|+|.|...++.......++|++|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3467889999999999999888877542 222222211111 11245799999999998888888888765
No 160
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=79.52 E-value=2.4 Score=32.18 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=44.1
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai 78 (187)
.........+++.+++..++..++..+|..+|.+..+.+...........+.++.+.....+..++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 219 ALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 344566789999999999999999999999999977766655433323333334443333333333
No 161
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.24 E-value=0.33 Score=40.72 Aligned_cols=77 Identities=4% Similarity=-0.153 Sum_probs=57.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
+..|+..||..+++.+|.-+|..||.|..+.+...-..+...-.+||+... ++|..+|..+.-..+.+..+.|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456788899999999999999999999988876554445555677887654 46677777665556677777777665
No 162
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=75.16 E-value=8.4 Score=30.87 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=58.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecC-------CCCCcceEEEEEecCHHHHHHHH----HHhC--
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEP-------RTRISRGFAFVTMDGVEDAERCI----KYLN-- 82 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~-------~~~~~~g~afV~f~~~~~a~~ai----~~l~-- 82 (187)
+=.+..|.+.||...++--.+...|.+||+|+.|.++.+. ...+......+-|-+.+.|.... +.|.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3345678889999999888888889999999999998665 11223457889999988876543 2233
Q ss_pred CCccCCeEEEEEecc
Q 029810 83 QSVLEGRYITVERSR 97 (187)
Q Consensus 83 g~~i~g~~l~v~~a~ 97 (187)
...+....|.|.+..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 235666777777655
No 163
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=73.51 E-value=0.84 Score=34.96 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=56.1
Q ss_pred CCCCeEEEcC----CCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 17 NPGNTLYVTG----LSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 17 ~~~~~l~V~~----Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
+...+++.++ |...++++.+.++|++-+.|..+.+..+.+ +.+..+.|+++.-....-.++...++..+.-+++.
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 3345666676 666778888888999999999888887765 67788999999887777778776666554444443
Q ss_pred E
Q 029810 93 V 93 (187)
Q Consensus 93 v 93 (187)
+
T Consensus 157 ~ 157 (267)
T KOG4454|consen 157 I 157 (267)
T ss_pred c
Confidence 3
No 164
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=71.66 E-value=11 Score=22.78 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=15.8
Q ss_pred HHHHHHhhcCCceeEEEEe
Q 029810 34 RDLEKHFSKEGKVASCFLV 52 (187)
Q Consensus 34 ~~L~~~f~~~G~i~~~~i~ 52 (187)
++|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6799999999998876554
No 165
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=67.54 E-value=22 Score=20.75 Aligned_cols=54 Identities=28% Similarity=0.230 Sum_probs=39.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCH----HHHHHHHHH
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGV----EDAERCIKY 80 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~----~~a~~ai~~ 80 (187)
++.|.||.-..-...|.+.+...-.|..+.+-.. .+-+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778888888888899999999888888877543 34688888743 455555553
No 166
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=66.89 E-value=8 Score=31.22 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=23.8
Q ss_pred EEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 64 AFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 64 afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
|||+|++.++|+.|++.+....- ..+.|+.|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCC
Confidence 79999999999999996655433 445666554
No 167
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=64.51 E-value=43 Score=29.08 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHHHhh----cCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029810 33 ERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 33 ~~~L~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
.-+|..+|. .+|.|.++.+...+.... ....++.|.+.++|..|+..+..
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~-~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPV-ARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcc-eEEEEEECCCHHHHHHHHHHHHh
Confidence 456777765 578888888776554332 45678899999999999887643
No 168
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=62.09 E-value=2.8 Score=34.26 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 33 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 33 ~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
...|.+++.+.|.|..-.+.... +.|.+||..-.+++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 35678888888887765554333 2568888888999999999988864
No 169
>PF14893 PNMA: PNMA
Probab=61.40 E-value=13 Score=30.50 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=33.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhc-CCceeEEEEee---cCCCCCcceEEEEEecCHHH
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSK-EGKVASCFLVV---EPRTRISRGFAFVTMDGVED 73 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~-~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~ 73 (187)
.++-..|.|.+||.++++++|++.+.. +-.+-.+.|.. ..+.+ .-.|+|+|...-+
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~~n 74 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAEDVN 74 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccccc
Confidence 345578899999999999998888753 22222232221 11111 3368898875433
No 170
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=60.91 E-value=54 Score=22.90 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=47.7
Q ss_pred CCeEEEcCCCCC---CcHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 19 GNTLYVTGLSTR---VTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 19 ~~~l~V~~Lp~~---~t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
...|.|...... .+...|.+.+.+-| .++.+... .+-..|.|.+.++..+|.+.|....-++..|.+.
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~--------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE--------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee--------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 356667655333 45677888888877 34454443 2268899999999999988887655455666666
Q ss_pred ecc
Q 029810 95 RSR 97 (187)
Q Consensus 95 ~a~ 97 (187)
++.
T Consensus 107 l~p 109 (127)
T PRK10629 107 DDN 109 (127)
T ss_pred cCC
Confidence 654
No 171
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=60.44 E-value=35 Score=23.57 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=28.2
Q ss_pred CCcHHHHHHHhhc-CCc----eeEEEEeecCCCCCcceEEEEEecCHHHHHH
Q 029810 30 RVTERDLEKHFSK-EGK----VASCFLVVEPRTRISRGFAFVTMDGVEDAER 76 (187)
Q Consensus 30 ~~t~~~L~~~f~~-~G~----i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ 76 (187)
+++.+||++-+++ |-. |.-..+-....+|++.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5677888777654 332 222234455567788889987 666665543
No 172
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=59.77 E-value=8.7 Score=34.11 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=52.2
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
+||+.+-....+..-|..++..++++....++.....+....-++++|..+..|+.|.. |.+..+....+
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ 582 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCL 582 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccce
Confidence 88888877777777888888999998888777666666666689999999887766654 55555544433
No 173
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=59.74 E-value=8.3 Score=29.91 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=29.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCF 50 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~ 50 (187)
..+...++|+-|||..++++.|..+.+++|.+..+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 345567899999999999999999999998655443
No 174
>PRK11901 hypothetical protein; Reviewed
Probab=58.21 E-value=44 Score=27.33 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=39.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEE--EEEecCHHHHHHHHHHhCCCc
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFA--FVTMDGVEDAERCIKYLNQSV 85 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~a--fV~f~~~~~a~~ai~~l~g~~ 85 (187)
....+|-|..+ ..++.|..|..+++ +..+.|......|+. .|. +=.|.+.++|..||..|....
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 34456666543 45777888887775 444555443333321 232 335789999999999887543
No 175
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=57.39 E-value=19 Score=23.49 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=22.1
Q ss_pred EEEEecCHHHHHHHHHHhCCC--ccCCeEEEEEe
Q 029810 64 AFVTMDGVEDAERCIKYLNQS--VLEGRYITVER 95 (187)
Q Consensus 64 afV~f~~~~~a~~ai~~l~g~--~i~g~~l~v~~ 95 (187)
|+|+|.++.-|+..++ +..+ .+++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEE
Confidence 6899999999999888 3333 45666555543
No 176
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=57.36 E-value=43 Score=20.56 Aligned_cols=45 Identities=33% Similarity=0.386 Sum_probs=35.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG 70 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 70 (187)
.+++|.++.-.--...+...+.....|..+.+-.. .+.++|+|.+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcC
Confidence 56788888777777889999998888888888655 3459999987
No 177
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=56.23 E-value=14 Score=24.59 Aligned_cols=21 Identities=5% Similarity=0.090 Sum_probs=17.5
Q ss_pred ceEEEEEecCHHHHHHHHHHh
Q 029810 61 RGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 61 ~g~afV~f~~~~~a~~ai~~l 81 (187)
--|++++|.+.+.+.+|+.++
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 358899999999999888765
No 178
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=55.35 E-value=54 Score=21.09 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHhh-cCC----ceeEEEEeecCCCCCcceEEEEEecCHHHHHH
Q 029810 29 TRVTERDLEKHFS-KEG----KVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76 (187)
Q Consensus 29 ~~~t~~~L~~~f~-~~G----~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ 76 (187)
.+.+..+|++.++ .|+ .|.-..|......+.+.|||.| |.+.+.+++
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 3556677777665 344 2222234444445666677776 677766654
No 179
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=54.61 E-value=55 Score=22.07 Aligned_cols=42 Identities=10% Similarity=0.195 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q 029810 34 RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78 (187)
Q Consensus 34 ~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai 78 (187)
.+|..++...| |.+..|..+..+. .-|+++++.+.+..-++|
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n--~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEEN--LLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcc--cEEEEEEEcChHHHHHHH
Confidence 46788888887 5556666665433 569999998554444443
No 180
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=54.32 E-value=21 Score=26.60 Aligned_cols=49 Identities=18% Similarity=0.074 Sum_probs=31.5
Q ss_pred CcHHHHHHHhhcC-CceeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHH
Q 029810 31 VTERDLEKHFSKE-GKVASCFLVVEPRT-RISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 31 ~t~~~L~~~f~~~-G~i~~~~i~~~~~~-~~~~g~afV~f~~~~~a~~ai~ 79 (187)
.|++.|.++.... |.+..|.+-..... -..+|-.||+|.+.+.|.++++
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 3444444443322 67777776543321 2456889999999999998877
No 181
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=54.29 E-value=21 Score=22.80 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=20.2
Q ss_pred cceEEEEEecCHHHHHHHHHHhCC
Q 029810 60 SRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 60 ~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
.+||-|||=.++.++..|+..+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 488999999999999999886654
No 182
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=51.50 E-value=36 Score=29.54 Aligned_cols=68 Identities=19% Similarity=0.139 Sum_probs=47.1
Q ss_pred CCCCCCCCeEEEcCCCCCC---cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 13 TETGNPGNTLYVTGLSTRV---TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~---t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
-++.+..-- +||||+.-. ....|..+-.+||.|-.+++-. .-.|...+.+.|++|+. -|+..+.++
T Consensus 27 lPPGP~~lP-iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~R 95 (489)
T KOG0156|consen 27 LPPGPPPLP-IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADR 95 (489)
T ss_pred CCcCCCCCC-ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCC
Confidence 344444333 478887633 3455667777999999877731 34677788999999998 578888887
Q ss_pred EE
Q 029810 90 YI 91 (187)
Q Consensus 90 ~l 91 (187)
..
T Consensus 96 p~ 97 (489)
T KOG0156|consen 96 PD 97 (489)
T ss_pred CC
Confidence 75
No 183
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=50.99 E-value=56 Score=20.71 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=38.9
Q ss_pred EEEcCCCCCCcHHHHHHHhhc-CC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 029810 22 LYVTGLSTRVTERDLEKHFSK-EG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 22 l~V~~Lp~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 81 (187)
-|+-.++..++..+|++.++. |+ .|..|..+.-+. + .--|||.+..-++|..+...+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHhh
Confidence 445557889999999988876 55 566665544331 1 235999998888877765543
No 184
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=50.69 E-value=29 Score=21.43 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=21.4
Q ss_pred EEEEEecCHHHHHHHHHHhCCCccCC
Q 029810 63 FAFVTMDGVEDAERCIKYLNQSVLEG 88 (187)
Q Consensus 63 ~afV~f~~~~~a~~ai~~l~g~~i~g 88 (187)
+.+|.|.+..+|.+|-+.|....|..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 68999999999999998887655533
No 185
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=50.20 E-value=56 Score=23.45 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=25.4
Q ss_pred eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 46 VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 46 i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
|..+.++.. .+||.||+....+++..++..+.+.
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 555555533 4899999999888888888877653
No 186
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=50.16 E-value=49 Score=20.66 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=26.5
Q ss_pred HhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 029810 39 HFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 85 (187)
Q Consensus 39 ~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~ 85 (187)
.+.+||.|..+.=. ..|+.+ |-+.+++++.++.|....
T Consensus 16 ~L~kfG~i~Y~Skk--------~kYvvl-Yvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK--------MKYVVL-YVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred hHhhcccEEEEECC--------ccEEEE-EECHHHHHHHHHHHhcCC
Confidence 46789988776321 225544 778999999999887644
No 187
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=49.00 E-value=42 Score=26.24 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=39.3
Q ss_pred CCeEEEcCCCCCCcH----HHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEe-cCHHHHHHHHHHhCCCccCCeEEE
Q 029810 19 GNTLYVTGLSTRVTE----RDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTM-DGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~----~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f-~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
...|||++|...+-. +.|...+-+-+ .|+.+.+-.. -.||+.-.. .+.++...+++++.+..+.-..|-
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ss-----y~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSS-----YNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccc-----ccccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 568999999764322 33433333322 2232322211 123443333 356777788887777766655566
Q ss_pred EEecc
Q 029810 93 VERSR 97 (187)
Q Consensus 93 v~~a~ 97 (187)
|-.++
T Consensus 112 ~GhST 116 (299)
T KOG4840|consen 112 VGHST 116 (299)
T ss_pred EecCc
Confidence 65544
No 188
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=48.80 E-value=73 Score=20.69 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=31.3
Q ss_pred HHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 34 RDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 34 ~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
+.++++++.+| +|..+.+..... --+..+++.+.+.|.++.-.+.
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G~y----D~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLGEY----DFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecCCC----CEEEEEEcCCHHHHHHHHHHHH
Confidence 55777787776 788887765432 3367888888888887665454
No 189
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=48.72 E-value=52 Score=24.37 Aligned_cols=74 Identities=16% Similarity=0.000 Sum_probs=38.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEE-EeecCCCCCcceEEE-EEecCH---HHHHHHHHHhCCCccCCeEEEEEe
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCF-LVVEPRTRISRGFAF-VTMDGV---EDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~-i~~~~~~~~~~g~af-V~f~~~---~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
.|.|.==|..++-++|.++|...-....+. --.|. | ..|-- |-+.+. +.|++.+++++...+...+|.++.
T Consensus 59 ~V~V~yDp~~isy~~LL~~ff~ihDPT~~nrQGnD~--G--tqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI 134 (174)
T COG0225 59 AVEVTYDPKVISYEELLEVFFEIHDPTSLNRQGNDR--G--TQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEI 134 (174)
T ss_pred EEEEEeCCccccHHHHHHHHheecCCCCCCccCCcc--c--ccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEe
Confidence 555655577788888888886543222211 11111 1 12322 333344 445555666666556666677666
Q ss_pred ccC
Q 029810 96 SRR 98 (187)
Q Consensus 96 a~~ 98 (187)
...
T Consensus 135 ~p~ 137 (174)
T COG0225 135 EPA 137 (174)
T ss_pred ecc
Confidence 543
No 190
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=48.13 E-value=6.2 Score=24.28 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=26.5
Q ss_pred HHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 34 RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 34 ~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
++|++.|..+.....+. +-.+|.-|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~v----------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV----------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh----------hhhhccCCCCHHHHHHHHHHhh
Confidence 57777776655443321 1269999999999888877553
No 191
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=47.63 E-value=95 Score=26.15 Aligned_cols=51 Identities=24% Similarity=0.265 Sum_probs=35.4
Q ss_pred CcHHHHHHHhhc----CCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 31 VTERDLEKHFSK----EGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 31 ~t~~~L~~~f~~----~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
...-+|..+|.. +|.|..+.+...+... ...+.++.|.+.++|.+|+..+.
T Consensus 144 ~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~-~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 144 VAGYDLTGLFVGSEGTLGIVTEATLKLLPKPE-NIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCCCChhhhcccCCccceEEEEEEEEeecCCC-ccEEEEEECCCHHHHHHHHHHHH
Confidence 333467777753 6788888877665433 23467889999999999886554
No 192
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=47.16 E-value=87 Score=21.10 Aligned_cols=48 Identities=6% Similarity=0.067 Sum_probs=32.0
Q ss_pred HHHHHhhcCCceeEEEEeecC---------------CCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 35 DLEKHFSKEGKVASCFLVVEP---------------RTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 35 ~L~~~f~~~G~i~~~~i~~~~---------------~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
...++|..||.+..+...-+. ..+..--|.+|+|.+.+...++.+++.
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~m 86 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKMM 86 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHhh
Confidence 456789999977766544222 122234579999999999998887654
No 193
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=46.34 E-value=66 Score=20.75 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=38.8
Q ss_pred EEcCCCCCCcHHHHHHHhhc-CC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 029810 23 YVTGLSTRVTERDLEKHFSK-EG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 23 ~V~~Lp~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 81 (187)
|+--+...++..+|++.++. |+ .|..|..+.... + .--|||.+...++|......+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHHHhh
Confidence 34447789999999998876 55 566776554431 2 235999999888888775543
No 194
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=46.01 E-value=40 Score=20.77 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCcHHHHHHHhhcCCcee---EEEEeecCCCCCcceEEEEEec-CHHHHHHHHHHhCC
Q 029810 30 RVTERDLEKHFSKEGKVA---SCFLVVEPRTRISRGFAFVTMD-GVEDAERCIKYLNQ 83 (187)
Q Consensus 30 ~~t~~~L~~~f~~~G~i~---~~~i~~~~~~~~~~g~afV~f~-~~~~a~~ai~~l~g 83 (187)
.+.+..|-++...|+.-. .-.|-. ..+...|.-+|++. +.++.++|+..|..
T Consensus 13 ~~~~piis~l~~~~~v~~nIl~g~i~~--i~~~~~G~l~l~l~g~~~~~~~a~~~L~~ 68 (76)
T PF09383_consen 13 SAQEPIISQLIREFGVDVNILHGNIEE--IQGTPFGILILELPGDDEEIEKAIAYLRE 68 (76)
T ss_dssp SSSSCHHHHHHHHHT-EEEEEEEEEEE--ETTEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHhCCCEEEEEEEeEE--cCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 555666777777777433 323322 23556788888885 44566888887754
No 195
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=45.58 E-value=72 Score=19.71 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=35.9
Q ss_pred EEEcCCCCCCcHHHHHHHhh-cCCce-eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 22 LYVTGLSTRVTERDLEKHFS-KEGKV-ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 22 l~V~~Lp~~~t~~~L~~~f~-~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
++.-.|+..++-++|..... .|+.. ..+.+.+..+.| -+|...+.++.+.|+..+.
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 34445777888888776654 45432 234444333222 4889999999999999664
No 196
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=45.46 E-value=77 Score=21.14 Aligned_cols=46 Identities=24% Similarity=0.288 Sum_probs=24.6
Q ss_pred CCcHHHHHHHhh-cCCceeEEEEe----ecCCCCCcceEEEEEecCHHHHHH
Q 029810 30 RVTERDLEKHFS-KEGKVASCFLV----VEPRTRISRGFAFVTMDGVEDAER 76 (187)
Q Consensus 30 ~~t~~~L~~~f~-~~G~i~~~~i~----~~~~~~~~~g~afV~f~~~~~a~~ 76 (187)
+.+..+|++-++ .|+.=..+.++ .....+.+.|||.| |.+.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 556777766654 55532222222 33334556667766 666666544
No 197
>PF07420 DUF1509: Protein of unknown function (DUF1509); InterPro: IPR010883 This family consists of several uncharacterised viral proteins, which include LORF2 from the Marek's disease-like viruses (Meleagrid herpesvirus 1 (MeHV-1) and LORF3 from Gallid herpesvirus 2. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=45.13 E-value=17 Score=29.13 Aligned_cols=18 Identities=44% Similarity=0.422 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCCCccCC
Q 029810 167 SRSVPRSPYGSPERKYAR 184 (187)
Q Consensus 167 ~rs~~rs~~~~~~r~~~~ 184 (187)
++++|+|+.++.++.+.+
T Consensus 333 srsRSrSrsrS~drr~RR 350 (377)
T PF07420_consen 333 SRSRSRSRSRSGDRRERR 350 (377)
T ss_pred ccccccCcccccchhccc
Confidence 333334444444444433
No 198
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=44.65 E-value=18 Score=19.36 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=10.2
Q ss_pred CCCcHHHHHHHhhcCC
Q 029810 29 TRVTERDLEKHFSKEG 44 (187)
Q Consensus 29 ~~~t~~~L~~~f~~~G 44 (187)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688899999998754
No 199
>PRK02302 hypothetical protein; Provisional
Probab=44.45 E-value=64 Score=21.10 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=26.2
Q ss_pred HhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 029810 39 HFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 85 (187)
Q Consensus 39 ~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~ 85 (187)
.+.+||.|..+.-. ..|+. .|-+.++|++.++.|....
T Consensus 22 ~LrkfG~I~Y~Skk--------~kYvv-lYvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 22 KLSKYGDIVYHSKR--------SRYLV-LYVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HHhhcCcEEEEecc--------ccEEE-EEECHHHHHHHHHHHhcCC
Confidence 35689998776321 22554 4778999999999887644
No 200
>PRK10905 cell division protein DamX; Validated
Probab=44.02 E-value=54 Score=26.77 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=36.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCc-ceEEEEEecCHHHHHHHHHHhCCC
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRIS-RGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~-~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
...+|-|..+. +++.|.+|..+.+ +....+......|+. .-.-+=.|.+.++|++||..|...
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 34566655443 5577888877775 333333333223321 112334578999999999988753
No 201
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=43.23 E-value=1e+02 Score=21.05 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=12.4
Q ss_pred eEEEcCCCCCCcHHHHHH
Q 029810 21 TLYVTGLSTRVTERDLEK 38 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~ 38 (187)
.|||+++|.....+.|++
T Consensus 7 ~l~~G~~~~~~~~~~l~~ 24 (138)
T smart00195 7 HLYLGSYSSALNLALLKK 24 (138)
T ss_pred CeEECChhHcCCHHHHHH
Confidence 599999987665444443
No 202
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=41.99 E-value=67 Score=21.19 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=25.9
Q ss_pred eEEEcCCCCCCcHHHH---HHHhhcCCceeEEEE--eecCCCCCcceEEEEEe
Q 029810 21 TLYVTGLSTRVTERDL---EKHFSKEGKVASCFL--VVEPRTRISRGFAFVTM 68 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L---~~~f~~~G~i~~~~i--~~~~~~~~~~g~afV~f 68 (187)
..|+.+||..+.+..+ +.+|..+..-..|.+ ..........|++.+.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 4578999998887654 555655553333333 22233445566554443
No 203
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=41.82 E-value=14 Score=31.00 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=44.5
Q ss_pred CeEEEcCCCCCCcH--------HHHHHHhhc--CCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 20 NTLYVTGLSTRVTE--------RDLEKHFSK--EGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~--------~~L~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
..+|+.++...... ++|..+|.. .+.+..+.+..+.....+.|..|++|.....|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45666666664443 489999988 5677777766665556667889999999999999873
No 204
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=41.44 E-value=1.6e+02 Score=26.10 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=35.1
Q ss_pred cHHHHHHHh----hcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 32 TERDLEKHF----SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 32 t~~~L~~~f----~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
+.-+|..+| ..+|.|.++.+...+... ....+++.|.+.++|.+|+..+.
T Consensus 279 ~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~-~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 279 AGYDLTRLVIGSEGTLGVITEVTLRLQKIPQ-HSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCccHHHHhccCCCceEEEEEEEEEeecCCc-ceEEEEEEcCCHHHHHHHHHHHH
Confidence 345787777 257788888876554322 24478899999999988887654
No 205
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=40.38 E-value=45 Score=27.39 Aligned_cols=6 Identities=33% Similarity=0.922 Sum_probs=2.3
Q ss_pred cHHHHH
Q 029810 32 TERDLE 37 (187)
Q Consensus 32 t~~~L~ 37 (187)
++++|.
T Consensus 214 ~k~eid 219 (367)
T KOG0835|consen 214 TKREID 219 (367)
T ss_pred cHHHHH
Confidence 333333
No 206
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=40.33 E-value=9.2 Score=23.21 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=29.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVAS-CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~-~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
..|.|+.+...-..+.+..-+...|.-.. +.+... +...-.-+-.|.+.++|++++..|.
T Consensus 5 y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~---~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 5 YYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKG---GPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEE---TTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecC---CceEEEEECCCCCHHHHHHHHHHHh
Confidence 45666655543333444444444453322 222211 1111233347899999999999887
No 207
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=39.63 E-value=91 Score=19.17 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCceeEEEEeecCCCCCc-ceEEEEEecCHHHHHHHHHHhC
Q 029810 34 RDLEKHFSKEGKVASCFLVVEPRTRIS-RGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 34 ~~L~~~f~~~G~i~~~~i~~~~~~~~~-~g~afV~f~~~~~a~~ai~~l~ 82 (187)
.+|.+.+..+| +.-+.+. |.. -++.|+.+.+.+.++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~s-----GsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS-----GSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE-----TTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC-----CCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677778888 3334442 321 2478888889999888888764
No 208
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=38.87 E-value=58 Score=21.61 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=41.6
Q ss_pred CCCCeEEEcCCCCCCc--HHHHHHHhhcCCceeEEEEeecCC-CCCcceEEEEEecC--HHHHHHHHHHhCCCcc-CCeE
Q 029810 17 NPGNTLYVTGLSTRVT--ERDLEKHFSKEGKVASCFLVVEPR-TRISRGFAFVTMDG--VEDAERCIKYLNQSVL-EGRY 90 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t--~~~L~~~f~~~G~i~~~~i~~~~~-~~~~~g~afV~f~~--~~~a~~ai~~l~g~~i-~g~~ 90 (187)
..+..|.|+-.....+ .+.|.++|++...|..+.+..-.. .+...-+--|+|.. .+.+-.+|..+....+ .+..
T Consensus 3 ~~g~~v~l~~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~ 82 (108)
T PF14581_consen 3 PKGEKVLLGEPEEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLPDGWP 82 (108)
T ss_pred CCCCEEEecCCccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCCCCce
Confidence 3456777764322222 367889999999888766543333 23333344456655 2233333333322233 3356
Q ss_pred EEEEecc
Q 029810 91 ITVERSR 97 (187)
Q Consensus 91 l~v~~a~ 97 (187)
|.+-...
T Consensus 83 vd~~~~~ 89 (108)
T PF14581_consen 83 VDFVLLD 89 (108)
T ss_pred EEEEEcc
Confidence 6555443
No 209
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=38.72 E-value=38 Score=27.81 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=36.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEE-----ee-----cCCCCCcceEEEEEecCHHHHHHHHHH
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFL-----VV-----EPRTRISRGFAFVTMDGVEDAERCIKY 80 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i-----~~-----~~~~~~~~g~afV~f~~~~~a~~ai~~ 80 (187)
+....+||.++-..+..+.|..+-...-+...+.+ +. ...-.+.-.|+.|.|.++++|++..+.
T Consensus 158 eka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~ 231 (343)
T KOG2854|consen 158 EKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARA 231 (343)
T ss_pred hheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHh
Confidence 44567788888777766665554433322222111 10 000112245899999999999887763
No 210
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=38.66 E-value=76 Score=18.02 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCc
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGK 45 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~ 45 (187)
..++|.+.....+.++|.+++..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46788777767888999999999985
No 211
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=38.27 E-value=1.1e+02 Score=19.74 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=25.5
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC----HHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 22 LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 22 l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
|-+++|.+.-.. +++-.+++-..|-.+.|. +..+ .|||.|.. .+....+++.+....+..+.|+|+.
T Consensus 3 lkfg~It~eeA~-~~QYeLsk~~~vyRvFiN-----gYar-~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTveE 73 (88)
T PF11491_consen 3 LKFGNITPEEAM-VKQYELSKNEAVYRVFIN-----GYAR-NGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVEE 73 (88)
T ss_dssp EE--S-TTTTTH-HHHHTTTTTTTB-----------TTSS---EEE--B-S-SHHHH---HHHTTT-SS-------SS
T ss_pred cccCCCCHHHHH-HHHHHhhcccceeeeeec-----cccc-ceEEEECcccCCHHHHHHHHHhcChhheeeccccHHH
Confidence 445667664322 233445555566666553 3334 69999974 4777788888888888888888754
No 212
>COG5584 Predicted small secreted protein [Function unknown]
Probab=37.46 E-value=86 Score=20.84 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=23.5
Q ss_pred CCCCCCcHHHHHHHhhcCCceeEEEEeecCC
Q 029810 26 GLSTRVTERDLEKHFSKEGKVASCFLVVEPR 56 (187)
Q Consensus 26 ~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~ 56 (187)
||..+..-+-+++.|++++.|.-.+|...++
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEecc
Confidence 4555566677899999999999877766553
No 213
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=37.34 E-value=33 Score=29.90 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=31.8
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccC
Q 029810 61 RGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 98 (187)
Q Consensus 61 ~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 98 (187)
..++++.|++.+.+.+|+..++|..+.+..+.|.....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~ 100 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGAT 100 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccc
Confidence 35899999999999999999999888877777766543
No 214
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=36.90 E-value=1.2e+02 Score=19.89 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=31.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhh-------cCC-ceeEEEEeec-----CCCCCcce-EEEEEecCHHHHHHHHH
Q 029810 21 TLYVTGLSTRVTERDLEKHFS-------KEG-KVASCFLVVE-----PRTRISRG-FAFVTMDGVEDAERCIK 79 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~-------~~G-~i~~~~i~~~-----~~~~~~~g-~afV~f~~~~~a~~ai~ 79 (187)
++|| |.++++++++..+.. ..| +|..+...-. +-.+...| |.++.|.-..++.+.++
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 5666 566777766555544 333 6666543210 01233345 68888987666666655
No 215
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.70 E-value=1.3e+02 Score=21.61 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=35.7
Q ss_pred CCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 029810 26 GLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 26 ~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 81 (187)
.|+..+.++-|.++.+..|.|.... -.| ..+.|.+.+...+|++.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHH
Confidence 4788888899999999999877654 211 455688999999999865
No 216
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=36.49 E-value=1e+02 Score=18.87 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=27.7
Q ss_pred cHHHHHHHhhcCC-ceeEEEEeecCCCCCc-ceEEEEEec-CHHHHHHHHHHhCC
Q 029810 32 TERDLEKHFSKEG-KVASCFLVVEPRTRIS-RGFAFVTMD-GVEDAERCIKYLNQ 83 (187)
Q Consensus 32 t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~-~g~afV~f~-~~~~a~~ai~~l~g 83 (187)
.-.++.+.|+.+| .+..|.-- +..+.. .=+-||+++ ..+..++|++.|+.
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSR--P~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESR--PSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECC--CCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3466777788776 34444322 211211 224567777 55566778877754
No 217
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=36.32 E-value=1.1e+02 Score=29.00 Aligned_cols=27 Identities=11% Similarity=0.331 Sum_probs=22.9
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCCccC
Q 029810 61 RGFAFVTMDGVEDAERCIKYLNQSVLE 87 (187)
Q Consensus 61 ~g~afV~f~~~~~a~~ai~~l~g~~i~ 87 (187)
+||-|||-.....+..||+-|-+..+.
T Consensus 210 kGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 210 KGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ceeEEEEechhHHHHHHHhhhhhheec
Confidence 789999999999999999987765555
No 218
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=35.73 E-value=1.3e+02 Score=21.20 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=24.6
Q ss_pred CCcHHHHHHHhh-cCC-ceeEEE----EeecCCCCCcceEEEEEecCHHHHHH
Q 029810 30 RVTERDLEKHFS-KEG-KVASCF----LVVEPRTRISRGFAFVTMDGVEDAER 76 (187)
Q Consensus 30 ~~t~~~L~~~f~-~~G-~i~~~~----i~~~~~~~~~~g~afV~f~~~~~a~~ 76 (187)
+.+..+|++.++ .|+ .=.++. |......+.+.|||.| |++.+.|..
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 566788877765 455 112222 2233345666677776 666655443
No 219
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=35.69 E-value=1.1e+02 Score=19.14 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=37.9
Q ss_pred EEEcCCCCCCcHHHHHHHhhcC-------CceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 029810 22 LYVTGLSTRVTERDLEKHFSKE-------GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 85 (187)
Q Consensus 22 l~V~~Lp~~~t~~~L~~~f~~~-------G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~ 85 (187)
|...+||..+|.++|.++..+. ..|.-+........+ +.||+.+=.+++...++.+.- |..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~a-G~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARRA-GLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHHc-CCC
Confidence 3456888888888887776443 334444333333222 568888878888777776643 543
No 220
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.61 E-value=1.4e+02 Score=21.99 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=39.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 81 (187)
.++-| +|+..+.++-|.++.+-+|.|... .+. .-.+.|-+.+..++|++.+
T Consensus 113 ~~iRv-~l~~~i~~erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe~ 163 (169)
T PF09869_consen 113 ETIRV-KLKKPIQEERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKEF 163 (169)
T ss_pred eeEEE-ecCccchHHHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHHH
Confidence 34444 689999999999999999987765 111 3467788999999999865
No 221
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=35.52 E-value=2.9e+02 Score=24.98 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=8.5
Q ss_pred EEEEEecCHHHHHHHHH
Q 029810 63 FAFVTMDGVEDAERCIK 79 (187)
Q Consensus 63 ~afV~f~~~~~a~~ai~ 79 (187)
.+.|.=.+.+.+..|+.
T Consensus 63 vvMVNGvsMenv~haFA 79 (1027)
T KOG3580|consen 63 VVMVNGVSMENVLHAFA 79 (1027)
T ss_pred EEEEcCcchhhhHHHHH
Confidence 44444445555555444
No 222
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=35.06 E-value=45 Score=26.40 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=24.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEE
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFL 51 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i 51 (187)
.....|+|||.+++..-|..++...-.+..+.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 345679999999999999988876544433333
No 223
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=34.74 E-value=66 Score=21.91 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=18.4
Q ss_pred CCCCcHHHHHHHhhcCCceeEEEE
Q 029810 28 STRVTERDLEKHFSKEGKVASCFL 51 (187)
Q Consensus 28 p~~~t~~~L~~~f~~~G~i~~~~i 51 (187)
...+|.++|.+.|..|-.-..+.|
T Consensus 42 ~~~Tt~~eiedaF~~f~~RdDIaI 65 (121)
T KOG3432|consen 42 DSKTTVEEIEDAFKSFTARDDIAI 65 (121)
T ss_pred eccCCHHHHHHHHHhhccccCeEE
Confidence 458999999999999976444443
No 224
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=34.66 E-value=1.2e+02 Score=19.64 Aligned_cols=50 Identities=30% Similarity=0.373 Sum_probs=28.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD 69 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 69 (187)
+...-|||++++..+-+.-...+.+..+.- .+.++....+ ..||+|-++-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~~n--eqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSDNN--EQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEccCC--CCCEEEEEeC
Confidence 345679999998877655444444433322 2333322222 4678888773
No 225
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=34.36 E-value=2.9e+02 Score=23.49 Aligned_cols=9 Identities=11% Similarity=0.017 Sum_probs=3.7
Q ss_pred eEEEcCCCC
Q 029810 21 TLYVTGLST 29 (187)
Q Consensus 21 ~l~V~~Lp~ 29 (187)
.|+.-++|.
T Consensus 316 ~VI~~~~P~ 324 (456)
T PRK10590 316 HVVNYELPN 324 (456)
T ss_pred EEEEeCCCC
Confidence 333344443
No 226
>PRK12450 foldase protein PrsA; Reviewed
Probab=34.19 E-value=96 Score=25.06 Aligned_cols=39 Identities=10% Similarity=0.267 Sum_probs=29.5
Q ss_pred CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 30 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 30 ~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
.+|+++|+.++..|.+ .+. ...|.+.+.+.|+.+++.|.
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~------------~~~I~~~~~~~A~~i~~~l~ 170 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMT------------AEIMQFEKEEDAKAALEAVK 170 (309)
T ss_pred CCCHHHHHHHHHHhCc--cce------------eEEEEeCCHHHHHHHHHHHH
Confidence 4799999999988632 111 24577889999999999885
No 227
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=33.69 E-value=64 Score=28.04 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 33 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 33 ~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
+++|..-|.-+-.-..++-+... .|++=+.|.++++|++..++++..
T Consensus 92 dqELY~nf~y~q~r~ffhtFegd-----dc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 92 DQELYQNFEYRQPRTFFHTFEGD-----DCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred hHHhhhhceeccCccceeeeccc-----cceeeecccCHHHHHHHHHHHHHH
Confidence 45566666554433333322211 347778899999999988877653
No 228
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=33.55 E-value=1.2e+02 Score=19.94 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=32.3
Q ss_pred CCCCCCcHHHHHHHhhcCCc-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 26 GLSTRVTERDLEKHFSKEGK-VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 26 ~Lp~~~t~~~L~~~f~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
.+.+.++...|...|---|. -+-..+-.|- =+.+|.|+|.+.+.+..|...|-
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~----W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDY----WRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhcccc----ceEeEEEECCChHHHHHHHHHHH
Confidence 35566777777766654442 1111111111 14589999999999998887664
No 229
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=32.54 E-value=1.2e+02 Score=18.37 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=30.2
Q ss_pred cHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecC---HHHHHHHHHHhCC
Q 029810 32 TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDG---VEDAERCIKYLNQ 83 (187)
Q Consensus 32 t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~---~~~a~~ai~~l~g 83 (187)
.-.+|.++|+.+| .|..+.-..... ....-..||++.. ....+.+++.|..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~-~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRK-GLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCC-CCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3567888888887 566663332221 1223356788874 5566677776654
No 230
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=32.48 E-value=1.5e+02 Score=22.33 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=33.2
Q ss_pred cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC-CccC--CeEEEEE
Q 029810 32 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ-SVLE--GRYITVE 94 (187)
Q Consensus 32 t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g-~~i~--g~~l~v~ 94 (187)
+.++..+++..++.-. +.|..+ +...|-+.+...+.++|.+|+..+-. ..+. +..|.|+
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 4567777777665322 333333 22233345556899999999986643 3333 3444444
No 231
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=32.33 E-value=18 Score=25.46 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=42.9
Q ss_pred CeEEEcCCC--CCCcHHHHHHHhhc-CCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 20 NTLYVTGLS--TRVTERDLEKHFSK-EGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 20 ~~l~V~~Lp--~~~t~~~L~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
....|+.+. ..++...|.+.+.. .+....+.+..- ..++..+.|.++++++.++. .....+++..|.++.-
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W 89 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRW 89 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhh
Confidence 344455553 23556666665543 222222333211 14589999999999999988 4445677777777655
Q ss_pred cC
Q 029810 97 RR 98 (187)
Q Consensus 97 ~~ 98 (187)
.+
T Consensus 90 ~~ 91 (153)
T PF14111_consen 90 SP 91 (153)
T ss_pred cc
Confidence 53
No 232
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=32.01 E-value=19 Score=29.52 Aligned_cols=10 Identities=20% Similarity=0.186 Sum_probs=4.8
Q ss_pred HHHHHHhhcC
Q 029810 34 RDLEKHFSKE 43 (187)
Q Consensus 34 ~~L~~~f~~~ 43 (187)
.+|+..|+.|
T Consensus 172 ~dLw~WyEpy 181 (453)
T KOG2888|consen 172 ADLWDWYEPY 181 (453)
T ss_pred hHHHHHhhhh
Confidence 4455554444
No 233
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=31.87 E-value=1.9e+02 Score=21.46 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=37.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHHh
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRT-RISRGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~-~~~~g~afV~f~~~~~a~~ai~~l 81 (187)
.=||+|.+...+-..|-+.|...|. .|.++..+.. ..+.++-.|.+.+.++..+++..+
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 4578898888888889888888774 3334433321 124578899999999988888754
No 234
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=31.56 E-value=3.6e+02 Score=23.88 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=26.4
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccCC
Q 029810 61 RGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 99 (187)
Q Consensus 61 ~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 99 (187)
.|-|. .|+++++|.+||.. +..-.|..|.|.+.-|+
T Consensus 383 ~G~A~-VF~see~a~~ai~~--g~i~~gdVvViRyeGPk 418 (535)
T TIGR00110 383 EGPAK-VFESEEEALEAILG--GKIKEGDVVVIRYEGPK 418 (535)
T ss_pred EEeEE-EECCHHHHHHHHhc--CCCCCCeEEEEeCCCCC
Confidence 44454 59999999999873 55556778888886655
No 235
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=31.48 E-value=1.4e+02 Score=18.84 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=40.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
.|+|.|-|.-+ +.+-.+|..-| .|..+.+-.....+.++ +.++...+.+..+..++.|++.
T Consensus 6 si~v~n~pGVL--~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr-iti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 6 SLVIHNDPSVL--LRISGIFARRGYYISSLNLNERDTSGVSE-MKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred EEEEecCCCHH--HHHHHHHhccCcceEEEEecccCCCCeeE-EEEEEECCHHHHHHHHHHHhCC
Confidence 56677666543 46778898877 67777765433333322 5566668899999999888763
No 236
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=31.45 E-value=1.9e+02 Score=22.58 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=45.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCC-ceeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPR---TRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~---~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
...-.-+|-|.-||..-.++-++.+|+..| .|.-..+..|.. -|.+ .|..|+..-..-...|+.+|-
T Consensus 114 ~~~~pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S-~y~~l~L~g~~rl~daL~HLY 184 (245)
T PF12623_consen 114 ATPIPLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDS-RYVDLTLTGTVRLADALNHLY 184 (245)
T ss_pred CCCCceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCC-cceEEEEeeeEEHHHHHhhhh
Confidence 344456788888998889999999999999 444334444432 2333 377788877666777776553
No 237
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=31.35 E-value=1.5e+02 Score=21.32 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=34.0
Q ss_pred EEcCCCCCCcHHHHHHHhhc-CC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 23 YVTGLSTRVTERDLEKHFSK-EG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 23 ~V~~Lp~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
|+--+....+..+|++.++. |+ .|..|..+.... + .--|||.+....+|.....
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHH
Confidence 33346778888999888876 54 566665543332 2 2259999977666554433
No 238
>PHA01632 hypothetical protein
Probab=31.34 E-value=49 Score=19.55 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=15.3
Q ss_pred EcCCCCCCcHHHHHHHhhc
Q 029810 24 VTGLSTRVTERDLEKHFSK 42 (187)
Q Consensus 24 V~~Lp~~~t~~~L~~~f~~ 42 (187)
|..+|...|+++|+.++.+
T Consensus 21 ieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhhcCCCCCHHHHHHHHHH
Confidence 4688999999999887654
No 239
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=31.22 E-value=1.5e+02 Score=24.81 Aligned_cols=50 Identities=14% Similarity=0.314 Sum_probs=32.8
Q ss_pred CcHHHHHHHhhcCC-cee----EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 31 VTERDLEKHFSKEG-KVA----SCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 31 ~t~~~L~~~f~~~G-~i~----~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
+|..+++++|..-- .|. .+.|+ | ++.-+.-+-||+..+.+++..||+.|.
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~l~~l-D-q~~lP~~~~~~~~~~~~~v~~aI~~M~ 57 (363)
T PRK05772 3 LTVKEVKELFKPKLLPIIWKDNTLTLL-D-QSLLPFETVYVDLKTVEEVALAIRNMQ 57 (363)
T ss_pred chHHHHHHHhCCCCceEEecCCEEEEE-e-cCCCCCeEEEEEeCCHHHHHHHHHhCc
Confidence 46678899997531 111 12222 2 234445689999999999999999764
No 240
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=30.96 E-value=1.5e+02 Score=19.14 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=34.0
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEec--CHHHHHHHHHHhCCC
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD--GVEDAERCIKYLNQS 84 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~--~~~~a~~ai~~l~g~ 84 (187)
.+|.-.||... -.|++|+...+...+|..+.-..++...+.+||-|. +.++.++.++.|+..
T Consensus 11 ~~~~v~~PE~p--Gal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 11 ALFAVEFPERP--GALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp EEEEEE--BST--THCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred EEEEEECCCCc--cHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 45555566543 357777777775544444333334445677777776 345556677777653
No 241
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=30.81 E-value=1.2e+02 Score=20.15 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=24.8
Q ss_pred HHHHHhhcCCc--ee---EEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q 029810 35 DLEKHFSKEGK--VA---SCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78 (187)
Q Consensus 35 ~L~~~f~~~G~--i~---~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai 78 (187)
.+...|++||- +. ++..+.. ...+.....|+|.+.+.|..+.
T Consensus 24 ~~~~a~~~~Ggr~LvRGG~v~~lEG--~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 24 KAKPAIEKFGGRYLVRGGEVETLEG--EWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred HhHHHHHHhCCeeEeeCCCeeeccC--CCCcccEEEEEcCCHHHHHHHh
Confidence 35667788872 11 1222221 1233457999999999887654
No 242
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=30.18 E-value=1.6e+02 Score=19.13 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=33.3
Q ss_pred EcCCCCCCcHHHHHHHh-hcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 24 VTGLSTRVTERDLEKHF-SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 24 V~~Lp~~~t~~~L~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
+--||..++-++|.+-+ ..|+.-..+.|....+ | -+|+..+.++.+.||....
T Consensus 15 ~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE-G-----D~iti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 15 YIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD-G-----DMITMGDQDDLDMAIDTAR 68 (86)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC-C-----CCccccCHHHHHHHHHHHH
Confidence 33588888887775554 3454333444444333 3 6778888888888887543
No 243
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=30.02 E-value=3.8e+02 Score=23.84 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=26.2
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccCC
Q 029810 61 RGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 99 (187)
Q Consensus 61 ~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 99 (187)
.|-| +.|+++++|.+||.. +..-.|..|.|.+.-|+
T Consensus 398 ~GpA-~VF~see~a~~ai~~--g~I~~gdVvViRyeGPk 433 (552)
T PRK00911 398 TGPA-RVFDSEEEAMEAILA--GKIKAGDVVVIRYEGPK 433 (552)
T ss_pred eeeE-EEECCHHHHHHHHhc--CCCCCCeEEEEeCCCCC
Confidence 4444 459999999999884 55556778888886655
No 244
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.83 E-value=31 Score=26.39 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=10.1
Q ss_pred CcceEEEEEecCH
Q 029810 59 ISRGFAFVTMDGV 71 (187)
Q Consensus 59 ~~~g~afV~f~~~ 71 (187)
..+.|+||+|.+.
T Consensus 107 ~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 107 ASRPYAFIEFDTF 119 (216)
T ss_pred cCCCeeEEehhHH
Confidence 3467999999764
No 245
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=29.80 E-value=1.7e+02 Score=20.49 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=20.0
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCC
Q 029810 60 SRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 60 ~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
.+||-||++....+...++..+.+.
T Consensus 37 fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 37 LKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCcEEEEEEECcHHHHHHHhCCCCE
Confidence 5899999999877777788766653
No 246
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=29.72 E-value=1.1e+02 Score=18.89 Aligned_cols=54 Identities=26% Similarity=0.330 Sum_probs=34.1
Q ss_pred CCCCCCcHHHHHHHhh-cCCce-eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 26 GLSTRVTERDLEKHFS-KEGKV-ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 26 ~Lp~~~t~~~L~~~f~-~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
.++..++.++|..... .|+.. ..+.|.+... -| -+|...+.++.+.|+..+...
T Consensus 17 ~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~----dg-D~V~i~sd~Dl~~a~~~~~~~ 72 (84)
T PF00564_consen 17 SLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDE----DG-DLVTISSDEDLQEAIEQAKES 72 (84)
T ss_dssp EECSTSHHHHHHHHHHHHHTTSTSSEEEEEEET----TS-SEEEESSHHHHHHHHHHHHHC
T ss_pred EcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCC----CC-CEEEeCCHHHHHHHHHHHHhc
Confidence 4667778888766664 45542 2333332222 12 688999999999999977543
No 247
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=29.28 E-value=1.7e+02 Score=20.46 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=21.6
Q ss_pred EEEEecC--------HHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 64 AFVTMDG--------VEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 64 afV~f~~--------~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
|||+|+. .+-|...++.+|.+.--|..|.|+..
T Consensus 21 AFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl 61 (129)
T COG1098 21 AFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVL 61 (129)
T ss_pred eEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEE
Confidence 7888776 35666677777766555666666543
No 248
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=28.96 E-value=20 Score=21.11 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=18.5
Q ss_pred cceEEEEEecC-HHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 60 SRGFAFVTMDG-VEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 60 ~~g~afV~f~~-~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
.+|||||...+ .++.--.-..|++ .++|-.+.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~-A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNG-AMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTT-S-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCC-CCCCCEEEEEEec
Confidence 37899999887 2221112233433 4566667776655
No 249
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=28.41 E-value=65 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhh
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFS 41 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~ 41 (187)
...++|+|||..++..-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45688999999999999988887
No 250
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=28.00 E-value=98 Score=26.20 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=38.0
Q ss_pred cCCCCCCcHHHHHHHhh----cCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 25 TGLSTRVTERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 25 ~~Lp~~~t~~~L~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
..|-.+-|--+|+++|- ..|.|..+.|+..+. -++...||+-.++-+++++++.
T Consensus 230 ~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~k-pksvn~af~gi~sf~~v~k~fv 287 (511)
T KOG1232|consen 230 SSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPK-PKSVNVAFIGIESFDDVQKVFV 287 (511)
T ss_pred hhhcccCccccchhheecCCceeeEEeeEEEeecCC-CcceeEEEEccccHHHHHHHHH
Confidence 44555666778999993 567888888876553 3345689998888887776543
No 251
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=27.82 E-value=1.5e+02 Score=18.11 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=38.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
+|.|......---.+|-.++...+ .|..+.+......+......-|+..+.++....|..|..
T Consensus 8 ~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 8 RLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCT
T ss_pred EEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHC
Confidence 344443333344567888888776 677777766432333344455666789999999988864
No 252
>PRK02886 hypothetical protein; Provisional
Probab=27.80 E-value=1.8e+02 Score=18.96 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=26.2
Q ss_pred HhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 029810 39 HFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 85 (187)
Q Consensus 39 ~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~ 85 (187)
.+.+||.|..+.-. ..|+. .|-+.++|++.++.|....
T Consensus 20 ~LrkyG~I~Y~Skr--------~kYvv-lYvn~~~~e~~~~kl~~l~ 57 (87)
T PRK02886 20 QLRKFGNVHYVSKR--------LKYAV-LYCDMEQVEDIMNKLSSLP 57 (87)
T ss_pred HHhhcCcEEEEecc--------ccEEE-EEECHHHHHHHHHHHhcCC
Confidence 35689998776321 22554 4778999999999887653
No 253
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=26.53 E-value=1.6e+02 Score=21.28 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=33.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHH
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAER 76 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ 76 (187)
..+||.|.-+..--+.--+.+|+.|- +|..|.+........-.....|.+.+..+.++
T Consensus 87 ~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~ 145 (153)
T PF14401_consen 87 ELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQ 145 (153)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHH
Confidence 34677776644444444578888886 67778777654322333445555554444443
No 254
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=26.35 E-value=1.5e+02 Score=17.55 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=35.9
Q ss_pred cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q 029810 32 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKY 80 (187)
Q Consensus 32 t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 80 (187)
..+++.+.+...-.|..|..+. |...=.+.|.+.+.++.+..+..
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~vt----G~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSVT----GEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEES----SSSSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEEe----CCCCEEEEEEECCHHHHHHHHHH
Confidence 3677888888999999998874 44455788999999999998665
No 255
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=26.25 E-value=1.4e+02 Score=17.07 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=26.0
Q ss_pred cHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEe-cCHHHHHHHHHHh
Q 029810 32 TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTM-DGVEDAERCIKYL 81 (187)
Q Consensus 32 t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f-~~~~~a~~ai~~l 81 (187)
.-.+|-++|...| .|..+........ ....++.+ .+..+++++++.|
T Consensus 13 ~l~~v~~~la~~~inI~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 13 ILADVTEILADHGINIDSISQSSDKDG---VGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEESST---TEEEEEEEEEEGHGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHeEEEecCCC---ceEEEEEEECCCCCHHHHHHHH
Confidence 3467788888887 5666666655432 23444433 2444555555444
No 256
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=26.17 E-value=1.1e+02 Score=18.81 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=15.7
Q ss_pred EEEEEecCHHHHHHHHHHhC
Q 029810 63 FAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 63 ~afV~f~~~~~a~~ai~~l~ 82 (187)
..-|.|.+++.|+.++..|.
T Consensus 4 ~l~i~f~s~~~A~ii~~sL~ 23 (76)
T PF09341_consen 4 TLEIPFESEEKAEIIYRSLK 23 (76)
T ss_dssp EEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHhC
Confidence 57789999999999887664
No 257
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=25.71 E-value=2.8e+02 Score=20.45 Aligned_cols=27 Identities=11% Similarity=0.404 Sum_probs=21.9
Q ss_pred cCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 69 DGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 69 ~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
.+.++..+|++.++.....|+.+-|.-
T Consensus 90 Ps~~~i~~aVeFi~k~asLGktvYVHC 116 (183)
T KOG1719|consen 90 PSLENIQKAVEFIHKNASLGKTVYVHC 116 (183)
T ss_pred CCHHHHHHHHHHHHhccccCCeEEEEe
Confidence 367889999998888888888877754
No 258
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=25.56 E-value=3.3e+02 Score=21.34 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=27.2
Q ss_pred CCCCeEEEcCCCCC--CcHHHHHHHhhcCCc-e---eEEEEeecC
Q 029810 17 NPGNTLYVTGLSTR--VTERDLEKHFSKEGK-V---ASCFLVVEP 55 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~--~t~~~L~~~f~~~G~-i---~~~~i~~~~ 55 (187)
+.+.-|+|-.|..+ -|-.+|+..|.+.|- + -.|.++.+.
T Consensus 92 P~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~ 136 (241)
T COG0217 92 PGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDR 136 (241)
T ss_pred CCceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEec
Confidence 45677888888774 467899999998862 2 246555554
No 259
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=25.42 E-value=73 Score=25.10 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=18.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhhc
Q 029810 21 TLYVTGLSTRVTERDLEKHFSK 42 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~ 42 (187)
.+.|+|||..++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5679999999998888888754
No 260
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=25.38 E-value=2.4e+02 Score=21.54 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=26.1
Q ss_pred eEEEcCCCCCCcHHH--------HHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCH
Q 029810 21 TLYVTGLSTRVTERD--------LEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGV 71 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~--------L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 71 (187)
.=||-.||.+++.++ ++++|..+|-+..+.|..+.. ....|.|.|.+.
T Consensus 69 re~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~---~NpHaHim~t~R 124 (216)
T PF03389_consen 69 REFEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGP---RNPHAHIMFTTR 124 (216)
T ss_dssp EEEEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETT---TEEEEEEEE--B
T ss_pred eeeeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCC---CCCEEEEEeecC
Confidence 345667999988765 344456678888887775432 244788887653
No 261
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=25.22 E-value=1e+02 Score=23.91 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=20.0
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCC
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEG 44 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G 44 (187)
.+.|+|||..++...|..++..++
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 377999999999999999987444
No 262
>PF05727 UPF0228: Uncharacterised protein family (UPF0228); InterPro: IPR008887 This small family of proteins is currently restricted to Methanosarcina species. Members of this family are about 200 residues in length, except for Q8TMK1 from SWISSPROT that has two copies of this region. Although the function of this region is unknown the pattern of conservation suggests that this may be an enzyme, including multiple conserved aspartate and glutamate residues. The most conserved motif in these proteins is NEL/MEXNE/D, where X can be any amino acid, and is found at the C terminus of these proteins.
Probab=25.19 E-value=1.7e+02 Score=20.47 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=29.8
Q ss_pred CCC-CCcHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecC--------HHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 27 LST-RVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDG--------VEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 27 Lp~-~~t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~--------~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
|+. .+..+.+.+++.++- .|+... +|+|.|.+ +++|.+... ..+-+...|.|.+
T Consensus 59 vSEqai~d~~FL~iL~K~nLqvKKfV------------wCyI~f~dgs~nywIpe~DAirIKn---ELE~NE~il~V~~ 122 (127)
T PF05727_consen 59 VSEQAIEDKNFLEILEKYNLQVKKFV------------WCYIRFGDGSKNYWIPEKDAIRIKN---ELEMNEKILIVYL 122 (127)
T ss_pred eehhhcCchhHHHHHHhcCcceeEEE------------EEEEEcCCCCcccccchHHHHHHHH---HHhcCCcEEEEEe
Confidence 443 445567788888875 233322 56777754 344444433 3344666677665
No 263
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=24.90 E-value=2e+02 Score=22.91 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=29.4
Q ss_pred HHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 36 LEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 36 L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
|++.|+++|.-.-..+ .|..-|.-||-+-+.++|+..+..|.
T Consensus 45 ~~~~~~~~~~g~~~t~-----~ga~ggv~~~p~~~~~~~~~~~~~l~ 86 (268)
T TIGR01743 45 IKETFEKFGIGKLLTV-----PGAAGGVKYIPKMSQAEAEEFVEELC 86 (268)
T ss_pred HHHHHHhcCCceEEEe-----CCCCCCeEEEeCCCHHHHHHHHHHHH
Confidence 6889987763222222 36777889999999998888776554
No 264
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=24.72 E-value=3e+02 Score=21.43 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=21.8
Q ss_pred CCCCeEEEcCCCCCC--cHHHHHHHhhcCCc
Q 029810 17 NPGNTLYVTGLSTRV--TERDLEKHFSKEGK 45 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~--t~~~L~~~f~~~G~ 45 (187)
+.+..|+|--|..+. |..+|+.+|.++|-
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg 122 (238)
T TIGR01033 92 PGGVAIIVECLTDNKNRTASEVRSAFNKNGG 122 (238)
T ss_pred CCceEEEEEEecCCHHhHHHHHHHHHHHcCC
Confidence 455677777777654 56899999999874
No 265
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=24.66 E-value=1.7e+02 Score=21.09 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=18.3
Q ss_pred eEEEEEecCHHHHHHHHHHhCC
Q 029810 62 GFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 62 g~afV~f~~~~~a~~ai~~l~g 83 (187)
..+.|+|.-+.+|...+..|..
T Consensus 46 ~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 46 NSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred ceEEEEEechHHHHHHHHHHhh
Confidence 4799999999998888877654
No 266
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=24.63 E-value=1.7e+02 Score=23.47 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=28.6
Q ss_pred CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029810 30 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 30 ~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
.+|+++|+.+|..+.+ .+ ....|.+.+.+.|+++++.+..
T Consensus 128 ~Vtd~ei~~~y~~~~~--~~------------~v~hIlv~~~~~A~~v~~~l~~ 167 (298)
T PRK04405 128 KVTNSQLKKAWKSYQP--KV------------TVQHILVSKKSTAETVIKKLKD 167 (298)
T ss_pred CCCHHHHHHHHHHhhh--hE------------EEEEEEecChHHHHHHHHHHHC
Confidence 5789999999987532 11 1356667788889998887753
No 267
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=24.55 E-value=66 Score=25.89 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=18.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhhc
Q 029810 21 TLYVTGLSTRVTERDLEKHFSK 42 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~ 42 (187)
.+.|.|||..++...|..++..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4778999999999888888864
No 268
>PLN02373 soluble inorganic pyrophosphatase
Probab=24.34 E-value=80 Score=23.74 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 33 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 33 ~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
-++|+++|..|-.+. + +.+.+..|.+.+.|.++|+..+
T Consensus 138 l~~I~~fF~~YK~le----------g--K~v~v~g~~~~~~A~~~I~~~~ 175 (188)
T PLN02373 138 LAEIRRFFEDYKKNE----------N--KEVAVNDFLPAEAAIEAIQYSM 175 (188)
T ss_pred HHHHHHHHHHhcccC----------C--CeEEeCCccCHHHHHHHHHHHH
Confidence 367888998885422 1 2245667888888888887543
No 269
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=24.32 E-value=1.4e+02 Score=16.46 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=19.8
Q ss_pred ecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 53 VEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 53 ~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
.++.+|+.+-..---|.+..+|++++..+.
T Consensus 9 ~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~ 38 (46)
T PF14657_consen 9 YDDETGKRKQKTKRGFKTKKEAEKALAKIE 38 (46)
T ss_pred EECCCCCEEEEEcCCCCcHHHHHHHHHHHH
Confidence 455566655444434889999999887654
No 270
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=24.25 E-value=1.5e+02 Score=16.96 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=26.2
Q ss_pred cHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCH-HHHHHHHHHhCC
Q 029810 32 TERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGV-EDAERCIKYLNQ 83 (187)
Q Consensus 32 t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~-~~a~~ai~~l~g 83 (187)
.-.+|..+|..++ .|..+........+ ....++++... +..+.+++.|..
T Consensus 13 ~l~~i~~~l~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~ 64 (72)
T cd04878 13 VLNRISGLFARRGFNIESLTVGPTEDPG--ISRITIVVEGDDDVIEQIVKQLNK 64 (72)
T ss_pred HHHHHHHHHHhCCCCEEEEEeeecCCCC--eEEEEEEEECCHHHHHHHHHHHhC
Confidence 3567888888876 56666554321111 12233333322 566666666653
No 271
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=23.98 E-value=85 Score=29.04 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=21.4
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029810 61 RGFAFVTMDGVEDAERCIKYLNQSVLEG 88 (187)
Q Consensus 61 ~g~afV~f~~~~~a~~ai~~l~g~~i~g 88 (187)
...|||+|++...|+.|.+..-...+.+
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~~~sr~~~ 384 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQIYSRVLG 384 (827)
T ss_pred cccEEEEEehhHHHHHHHHhhhhhhhhc
Confidence 4589999999999999988654444433
No 272
>PRK09213 pur operon repressor; Provisional
Probab=23.61 E-value=2e+02 Score=22.90 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=29.4
Q ss_pred HHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 36 LEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 36 L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
|++.|++.|.-.-..+ .|..-|.-||-+.+.++|+..+..|.
T Consensus 47 ~~~~~~~~~~g~~~t~-----~ga~ggv~~~p~~~~~~a~~~~~~L~ 88 (271)
T PRK09213 47 IKETFEKQGIGTLETV-----PGAAGGVKYIPSISEEEAREFVEELC 88 (271)
T ss_pred HHHHHHhcCCceEEEe-----CCCCCCeEEEcCCCHHHHHHHHHHHH
Confidence 6888987763222222 36677888999999998888777654
No 273
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.48 E-value=1.8e+02 Score=22.85 Aligned_cols=58 Identities=7% Similarity=-0.079 Sum_probs=37.6
Q ss_pred CCeEEEcCCCCC-----CcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEec---CHHHHHHHHHHhC
Q 029810 19 GNTLYVTGLSTR-----VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD---GVEDAERCIKYLN 82 (187)
Q Consensus 19 ~~~l~V~~Lp~~-----~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~---~~~~a~~ai~~l~ 82 (187)
+.+|.|-|++.. .+.++|.+++..++....+.++.|- +.+|+.-. +.+..+.++..+.
T Consensus 137 ~v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~lg~~lDt------~H~~~~g~~~~~~~~~~~~~~~~~ 202 (274)
T TIGR00587 137 IVTILLENMAGQGSELGRSFEELAYIIKVIVDKRRIGVCLDT------CHFFAAGYDITTKAYFEVVKNEFD 202 (274)
T ss_pred CCEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCceEEEEEh------hhHHhcCCCcCCHHHHHHHHHHHH
Confidence 478889998742 4789999999888755567777662 23443333 3555666666544
No 274
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=23.46 E-value=2.5e+02 Score=24.13 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=40.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCC----ceeEEEEeecCCCCCc--------ceEEEEEecCHHHHHHHHHHhCC
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEG----KVASCFLVVEPRTRIS--------RGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G----~i~~~~i~~~~~~~~~--------~g~afV~f~~~~~a~~ai~~l~g 83 (187)
..+.+|.+.+=.+-++.+.|++++.... .+.-+.+..+..+|.. .-.+.||.++..++++.|..+|.
T Consensus 95 ~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNt 173 (460)
T COG1207 95 YDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINT 173 (460)
T ss_pred CCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEee
Confidence 3445777766667788888887776552 2222222222223322 22578888888888887776653
No 275
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=22.91 E-value=2.1e+02 Score=18.12 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=42.1
Q ss_pred CCCCCCcHHHHHHHh-hcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 26 GLSTRVTERDLEKHF-SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 26 ~Lp~~~t~~~L~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
-+|..+.-+||..-. ..||.-..+.+..+ .-.|-..+.++..+||+.++- ....+.|.|-+
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRilL 76 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDR-SPHMKSLRILL 76 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHcc-CccccceeEeE
Confidence 466777777775554 57887777766533 377888899999999997765 44444555544
No 276
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=22.73 E-value=1.8e+02 Score=17.27 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=25.0
Q ss_pred HHHHhhcCC-ceeE----EEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 36 LEKHFSKEG-KVAS----CFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 36 L~~~f~~~G-~i~~----~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
+..++.+|| .+.. ..++.. .........|+|.+.+.|.+.+.
T Consensus 11 ~~~~l~~~GG~~l~~~~~~~~leG--~~~~~~~viieFPs~~aa~~~~~ 57 (65)
T PF07045_consen 11 VPPILEKYGGRVLARGGEPEVLEG--DWDPDRVVIIEFPSMEAAKAWYN 57 (65)
T ss_dssp HHHHHHHTT-EEEEECEEEEEEES--T-SSSEEEEEEESSHHHHHHHHC
T ss_pred HHHHHHHcCCEEEEECCceeEEec--CCCCCeEEEEECCCHHHHHHHHC
Confidence 455677777 2221 233333 12234579999999999887653
No 277
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=22.58 E-value=1.6e+02 Score=16.50 Aligned_cols=42 Identities=10% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q 029810 34 RDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCI 78 (187)
Q Consensus 34 ~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai 78 (187)
.+|-++|.+.+ .|..+.+.... .......+++++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 45667777766 67666655432 22556777778877777665
No 278
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=22.54 E-value=1.8e+02 Score=22.01 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=33.0
Q ss_pred CcHHHHHHHhhcCCc---eeEEEEeecCCCCCcceEEEEE-ecCHHHHHHHHHHhCCCccC
Q 029810 31 VTERDLEKHFSKEGK---VASCFLVVEPRTRISRGFAFVT-MDGVEDAERCIKYLNQSVLE 87 (187)
Q Consensus 31 ~t~~~L~~~f~~~G~---i~~~~i~~~~~~~~~~g~afV~-f~~~~~a~~ai~~l~g~~i~ 87 (187)
.+.+++.++..++|. |...++... +..++ +-|. -.+.++|..+...|-+..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~G---gRGK~-GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAG---GRGKA-GGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSS---TTTTT-TCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeec---CcccC-CceeecCCHHHHHHHHHHHhCCceE
Confidence 456777777776663 444444432 33343 3343 44789999999888888775
No 279
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=22.41 E-value=81 Score=22.88 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 029810 33 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 33 ~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 81 (187)
-++|+++|..|-.+..- +-.-+..|.+.+.|.++|+..
T Consensus 116 l~~I~~fF~~YK~le~~-----------k~~~~~g~~~~~~A~~~I~~~ 153 (155)
T cd00412 116 LDEIKHFFEHYKDLEGK-----------KEVKVAGWKDKEEALKIIKES 153 (155)
T ss_pred HHHHHHHHHHhcccCCC-----------CceEECcCcCHHHHHHHHHHH
Confidence 46789999888643320 123455788888888888754
No 280
>PRK00110 hypothetical protein; Validated
Probab=22.06 E-value=3.2e+02 Score=21.43 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=21.1
Q ss_pred CCCCeEEEcCCCCCC--cHHHHHHHhhcCCc
Q 029810 17 NPGNTLYVTGLSTRV--TERDLEKHFSKEGK 45 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~--t~~~L~~~f~~~G~ 45 (187)
+.+..|.|--|..+. |..+|+.+|.++|-
T Consensus 92 P~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG 122 (245)
T PRK00110 92 PGGVAIIVEALTDNRNRTAAEVRHAFSKNGG 122 (245)
T ss_pred CCCeEEEEEEecCCHHHHHHHHHHHHHhcCc
Confidence 345667777777654 56899999998863
No 281
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.06 E-value=2.2e+02 Score=18.29 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=18.9
Q ss_pred ceeEEEEeecCCCCCcceEEEEEecC
Q 029810 45 KVASCFLVVEPRTRISRGFAFVTMDG 70 (187)
Q Consensus 45 ~i~~~~i~~~~~~~~~~g~afV~f~~ 70 (187)
+|.+|.|..-...+.-+++|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46677777665557778899999876
No 282
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.05 E-value=2.9e+02 Score=23.09 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=33.0
Q ss_pred HHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 34 RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 34 ~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
++|...|..-.-+..+....+ --||.|...-+.++-|...++..+.+..
T Consensus 265 ~~Le~HF~~~hy~ct~qtc~~--------~k~~vf~~~~el~~h~~~~h~~~~~~~~ 313 (493)
T COG5236 265 EDLEAHFRNAHYCCTFQTCRV--------GKCYVFPYHTELLEHLTRFHKVNARLSE 313 (493)
T ss_pred HHHHHHhhcCceEEEEEEEec--------CcEEEeccHHHHHHHHHHHhhcccccCc
Confidence 566666665555555544433 2478899998888888888887666654
No 283
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=21.84 E-value=74 Score=19.29 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=10.8
Q ss_pred cHHHHHHHhhcCCceeEE
Q 029810 32 TERDLEKHFSKEGKVASC 49 (187)
Q Consensus 32 t~~~L~~~f~~~G~i~~~ 49 (187)
|--||.+++.+||.+..+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 345899999999976553
No 284
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=21.83 E-value=1.3e+02 Score=22.18 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=25.2
Q ss_pred CCCCeEEEcCCCC--CC-cHHHHHHHhhcCCceeEEEEe
Q 029810 17 NPGNTLYVTGLST--RV-TERDLEKHFSKEGKVASCFLV 52 (187)
Q Consensus 17 ~~~~~l~V~~Lp~--~~-t~~~L~~~f~~~G~i~~~~i~ 52 (187)
..-..+||-+.+. +. ..+.|.+...+|+.|..+.+.
T Consensus 19 ~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~ 57 (195)
T PF01762_consen 19 VRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFV 57 (195)
T ss_pred CcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecc
Confidence 3446788877776 32 234588889999999887764
No 285
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=21.77 E-value=2.5e+02 Score=18.60 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=35.9
Q ss_pred CCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029810 29 TRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 29 ~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
.+-.+++|.-+...-|.|.+|.+...-. | .-.+.+...+..+++..|+.|+.
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~Y-G--~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVY-G--EITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTT-E--EEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCC-c--EEEEEEecCCHHHHHHHHHHHhc
Confidence 3445677777777666888887765432 2 34678888999999999987764
No 286
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=21.29 E-value=98 Score=19.48 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=23.1
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCC-ccCCeEEEEE
Q 029810 61 RGFAFVTMDGVEDAERCIKYLNQS-VLEGRYITVE 94 (187)
Q Consensus 61 ~g~afV~f~~~~~a~~ai~~l~g~-~i~g~~l~v~ 94 (187)
.|.|.|...+.+.|+.....|... ...|.+|.+.
T Consensus 47 ~G~avv~~~~~e~ae~~~~~l~~~g~~~~~PL~~t 81 (82)
T PF02617_consen 47 EGRAVVGTGSREEAEEYAEKLQRAGRDSGHPLRAT 81 (82)
T ss_dssp HSEEEEEEEEHHHHHHHHHHHHHHHHHTT---EEE
T ss_pred cCCEeeeeCCHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 567899888999999888766543 4567777664
No 287
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=21.22 E-value=1.9e+02 Score=23.14 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=29.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhh-cCCceeEEEEeecCCCCCcce
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFS-KEGKVASCFLVVEPRTRISRG 62 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~-~~G~i~~~~i~~~~~~~~~~g 62 (187)
..+.+..||+-+|+..++++|. .++. .+-..+.-.|..+..++.-+|
T Consensus 17 ~LE~G~VL~fP~l~F~l~~~E~-~fL~p~~~d~k~KNIs~~p~~~~l~G 64 (281)
T PF11004_consen 17 ALEQGKVLYFPQLRFPLSPEER-AFLDPAIVDPKRKNISYRPNTGSLRG 64 (281)
T ss_pred HhhCCCEEEeCCCCCCCChhHH-hhcChhhhCCCCCceeecCCCCceec
Confidence 3467899999999999888876 4443 333333333444555555555
No 288
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=21.20 E-value=2.6e+02 Score=25.99 Aligned_cols=17 Identities=12% Similarity=0.366 Sum_probs=8.3
Q ss_pred eEEEEEecCHHHHHHHH
Q 029810 62 GFAFVTMDGVEDAERCI 78 (187)
Q Consensus 62 g~afV~f~~~~~a~~ai 78 (187)
|+.+|-++...++.+|+
T Consensus 510 GVt~IP~~kLt~dl~~~ 526 (894)
T KOG0132|consen 510 GVTYIPWEKLTDDLEAW 526 (894)
T ss_pred CeeEeehHhcCHHHHHh
Confidence 45555555444444333
No 289
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=21.13 E-value=2.5e+02 Score=21.09 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=16.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCC
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEG 44 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G 44 (187)
.|-|.==|..++-++|.++|...-
T Consensus 61 ~V~V~yDp~~iSy~~LL~~Ff~~h 84 (186)
T PRK13014 61 AVQITYDPKQVSYENLLQIFFSTH 84 (186)
T ss_pred EEEEEECCCcCCHHHHHHHHHHhc
Confidence 355655566788888888886643
No 290
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=21.04 E-value=2.3e+02 Score=20.95 Aligned_cols=73 Identities=16% Similarity=0.059 Sum_probs=35.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceE-EEEEecCHHHHHH---HHHHhCCCccCCeEEEEEec
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGF-AFVTMDGVEDAER---CIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~---ai~~l~g~~i~g~~l~v~~a 96 (187)
.|.|.==|..++-++|.++|...-......-.- ......| .-|-|.+.++.+. +++.++...+.+.+|.++..
T Consensus 56 ~V~V~yDp~~isy~~Ll~~f~~~hDPt~~~~Qg---~D~G~qYRS~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~Tei~ 132 (172)
T PRK14054 56 AVEITYDPAVISYRELLELFFQIHDPTTLNRQG---NDRGTQYRSAIFYHDEEQKEIAEASIAELQASGLFDKPIVTEVE 132 (172)
T ss_pred EEEEEECCCcCCHHHHHHHHHHhCCCCccCCCC---CCCCcCceeEEEeCCHHHHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 466655567788888888886543322221100 0011224 3444556554444 44445433323455555543
No 291
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=21.02 E-value=1.3e+02 Score=21.34 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=15.6
Q ss_pred ceEEEEEecCHHHHHHHHHHh
Q 029810 61 RGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 61 ~g~afV~f~~~~~a~~ai~~l 81 (187)
.|..+|-|.+.++|++.++..
T Consensus 114 Mg~~~~aF~~~~~A~~F~~~~ 134 (149)
T PF05573_consen 114 MGPDLIAFASKEDAEAFAKEH 134 (149)
T ss_dssp TS--EEEES-HHHHHHHHHHT
T ss_pred CCCcccccCCHHHHHHHHHHc
Confidence 467899999999999999865
No 292
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=20.97 E-value=1.8e+02 Score=20.84 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=18.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhc
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSK 42 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~ 42 (187)
.-+.|+|+|..++.+.|..++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 35678999999988888888764
No 293
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=20.89 E-value=88 Score=24.39 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCCCCcHHHHHH-HhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 029810 27 LSTRVTERDLEK-HFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 27 Lp~~~t~~~L~~-~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 81 (187)
+..+--+++|+. .|..++++..+++.....||.+. ..|-.-+++++..++++.|
T Consensus 15 i~~~~a~~~i~~~~~~~~~~~~k~D~~R~~RtG~pE-vv~a~gKt~eqi~~i~~~~ 69 (254)
T COG1691 15 ISLEEAEEQIKSLAFESLGEFAKLDIHREKRTGFPE-VVFAPGKTPEQIVEIVEVL 69 (254)
T ss_pred ccHHHHHHHHhhhhhhhhchhhhccchhhccCCCce-EeecCCCCHHHHHHHHHHH
Confidence 333334455655 56777777777777665544322 3334445677766666654
No 294
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=20.82 E-value=2e+02 Score=20.15 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=23.9
Q ss_pred EEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 63 FAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 63 ~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
+-+..+.+.. ...++..|.+..+.+++|.|....
T Consensus 28 ~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 28 FRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred eEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 5555555544 445677788899999999997653
No 295
>PRK12378 hypothetical protein; Provisional
Probab=20.71 E-value=3.7e+02 Score=20.93 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=22.0
Q ss_pred CCCCeEEEcCCCCCC--cHHHHHHHhhcCCc
Q 029810 17 NPGNTLYVTGLSTRV--TERDLEKHFSKEGK 45 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~--t~~~L~~~f~~~G~ 45 (187)
+.+..|.|--|..+. |..+|+.+|.++|-
T Consensus 89 PgGvaiiVe~lTDN~nRt~~~vr~~f~K~gg 119 (235)
T PRK12378 89 PNGVMVIVECLTDNVNRTVANVRSAFNKNGG 119 (235)
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHhhcCC
Confidence 456677787787754 56899999999863
No 296
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=20.55 E-value=2.4e+02 Score=18.80 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=26.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG 70 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 70 (187)
+...-|||++++..+-+.--..+-+.++. -.+.++.... ...||+|.++.+
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~--~eqG~~~~t~G~ 75 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATN--TESGFEFQTFGE 75 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCC--CCCCcEEEecCC
Confidence 34567999998876654432333333332 2222222211 224899888765
No 297
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=20.51 E-value=1.8e+02 Score=21.07 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 029810 33 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 33 ~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 81 (187)
-++|+++|..|-.+. .++-+..-.|.+.+.|.+.|+..
T Consensus 113 ~~~i~~fF~~YK~l~-----------~~k~~~~~~~~~~~~A~~~i~~~ 150 (156)
T PF00719_consen 113 LDEIEHFFRNYKDLE-----------ENKWVEVGGWEDAEEALKVIKEA 150 (156)
T ss_dssp HHHHHHHHHHTTTTS-----------TTEEEEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcC-----------CCCeEEeCCCcCHHHHHHHHHHH
Confidence 367899999987653 11334556778888888887754
No 298
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=20.06 E-value=5.4e+02 Score=21.76 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=40.3
Q ss_pred CcHHHHHHHhhcCC---ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC----CccCCeEEEEEec
Q 029810 31 VTERDLEKHFSKEG---KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ----SVLEGRYITVERS 96 (187)
Q Consensus 31 ~t~~~L~~~f~~~G---~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g----~~i~g~~l~v~~a 96 (187)
.+.+++..+..++| -|.+.++... +..|.=+...-++.++|.++.+.|-| ..+.|+.+..-+.
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~aG---GRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlv 95 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHAG---GRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLV 95 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeeec---CccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEE
Confidence 46677888888886 2444555433 33343334444579999999988888 6778876654443
Done!