Query 029810
Match_columns 187
No_of_seqs 284 out of 2665
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 05:54:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 5.2E-25 1.8E-29 183.3 19.1 92 15-106 98-189 (437)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.1E-24 3.8E-29 146.3 11.4 82 17-98 17-98 (99)
3 1h2v_Z 20 kDa nuclear CAP bind 99.9 4.7E-24 1.6E-28 154.4 12.9 88 14-101 34-121 (156)
4 2cq0_A Eukaryotic translation 99.9 1.4E-23 4.7E-28 141.7 12.6 93 12-104 8-100 (103)
5 2dnz_A Probable RNA-binding pr 99.9 4.4E-23 1.5E-27 137.1 12.8 87 16-102 2-88 (95)
6 3s8s_A Histone-lysine N-methyl 99.9 3.2E-23 1.1E-27 141.8 12.0 84 16-99 3-86 (110)
7 2cpz_A CUG triplet repeat RNA- 99.9 4.3E-23 1.5E-27 142.0 12.7 92 13-104 19-110 (115)
8 2d9p_A Polyadenylate-binding p 99.9 7.6E-23 2.6E-27 138.0 13.5 93 10-104 6-98 (103)
9 2dnm_A SRP46 splicing factor; 99.9 2.7E-23 9.4E-28 140.2 11.3 91 13-103 7-97 (103)
10 2dgo_A Cytotoxic granule-assoc 99.9 1.8E-22 6.1E-27 138.8 15.4 93 10-102 6-98 (115)
11 2dnh_A Bruno-like 5, RNA bindi 99.9 1.1E-22 3.7E-27 137.7 13.8 91 14-105 10-103 (105)
12 2cqb_A Peptidyl-prolyl CIS-tra 99.9 3.2E-23 1.1E-27 139.6 11.1 91 13-103 6-96 (102)
13 2dgs_A DAZ-associated protein 99.9 8.9E-23 3E-27 136.7 13.2 89 14-103 5-93 (99)
14 2cqd_A RNA-binding region cont 99.9 1.3E-22 4.4E-27 139.8 14.0 91 10-101 8-98 (116)
15 1whw_A Hypothetical protein ri 99.9 7.5E-23 2.6E-27 137.0 12.5 88 15-102 4-91 (99)
16 1x5s_A Cold-inducible RNA-bind 99.9 5.4E-23 1.8E-27 138.5 11.7 90 13-102 6-95 (102)
17 2cph_A RNA binding motif prote 99.9 9.2E-23 3.2E-27 138.4 12.9 93 10-102 6-100 (107)
18 1x5u_A Splicing factor 3B subu 99.9 8.4E-23 2.9E-27 138.2 12.7 90 12-101 8-97 (105)
19 2do4_A Squamous cell carcinoma 99.9 1.5E-22 5.2E-27 135.8 13.7 89 12-101 10-98 (100)
20 1x4h_A RNA-binding protein 28; 99.9 1.4E-22 4.9E-27 138.4 13.4 93 11-103 7-105 (111)
21 3bs9_A Nucleolysin TIA-1 isofo 99.9 5.7E-23 2E-27 134.3 10.8 84 16-99 3-86 (87)
22 3ex7_B RNA-binding protein 8A; 99.9 3.5E-23 1.2E-27 144.6 10.2 89 14-102 17-105 (126)
23 1u6f_A Tcubp1, RNA-binding pro 99.9 1.4E-22 4.7E-27 143.9 13.5 89 14-102 37-125 (139)
24 2cqc_A Arginine/serine-rich sp 99.9 1.1E-22 3.8E-27 135.1 11.7 89 10-98 6-94 (95)
25 2fy1_A RNA-binding motif prote 99.9 1.4E-22 4.8E-27 139.8 12.6 85 15-100 3-87 (116)
26 2kxn_B Transformer-2 protein h 99.9 5E-23 1.7E-27 144.6 10.5 93 8-100 35-127 (129)
27 1x5t_A Splicing factor 3B subu 99.9 7.2E-23 2.5E-27 136.3 10.2 86 17-102 3-89 (96)
28 1p27_B RNA-binding protein 8A; 99.9 1.1E-22 3.9E-27 137.8 11.2 87 15-101 19-105 (106)
29 2dng_A Eukaryotic translation 99.9 2.5E-22 8.7E-27 135.5 12.8 90 11-102 7-96 (103)
30 2cq3_A RNA-binding protein 9; 99.9 4.9E-22 1.7E-26 134.0 14.2 94 9-104 5-98 (103)
31 2cpf_A RNA binding motif prote 99.9 1.5E-22 5.1E-27 135.3 11.3 87 17-103 3-92 (98)
32 2lxi_A RNA-binding protein 10; 99.9 1.5E-23 5.2E-28 138.6 6.3 83 19-101 1-85 (91)
33 3md1_A Nuclear and cytoplasmic 99.9 1.9E-22 6.6E-27 130.7 11.4 82 19-100 1-82 (83)
34 2e5h_A Zinc finger CCHC-type a 99.9 2.2E-22 7.5E-27 133.4 11.6 86 12-97 9-94 (94)
35 2dgp_A Bruno-like 4, RNA bindi 99.9 1.6E-22 5.6E-27 137.0 11.1 91 12-102 6-99 (106)
36 2cpe_A RNA-binding protein EWS 99.9 2.6E-22 8.8E-27 137.6 12.2 90 13-102 9-106 (113)
37 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.7E-22 5.9E-27 131.5 10.5 83 15-97 3-85 (85)
38 3p5t_L Cleavage and polyadenyl 99.9 3.5E-23 1.2E-27 136.5 6.8 84 20-103 2-87 (90)
39 1wi8_A EIF-4B, eukaryotic tran 99.9 3.2E-22 1.1E-26 135.3 11.7 87 13-101 9-96 (104)
40 2do0_A HnRNP M, heterogeneous 99.9 1.8E-21 6.1E-26 133.5 15.5 89 12-101 8-96 (114)
41 2dh8_A DAZ-associated protein 99.9 2.5E-22 8.4E-27 136.0 10.8 90 12-102 9-98 (105)
42 2dhg_A TRNA selenocysteine ass 99.9 4E-22 1.4E-26 134.6 11.9 89 13-102 3-93 (104)
43 2lkz_A RNA-binding protein 5; 99.9 1.1E-22 3.9E-27 135.4 8.4 84 15-98 5-94 (95)
44 2x1f_A MRNA 3'-END-processing 99.9 3.6E-22 1.2E-26 133.1 10.8 84 18-101 1-84 (96)
45 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.2E-21 4.2E-26 132.1 13.4 89 12-102 8-96 (103)
46 2la6_A RNA-binding protein FUS 99.9 5.2E-22 1.8E-26 133.0 11.5 85 13-97 7-99 (99)
47 2div_A TRNA selenocysteine ass 99.9 3.3E-22 1.1E-26 133.9 10.4 86 14-99 4-94 (99)
48 4f25_A Polyadenylate-binding p 99.9 4.6E-22 1.6E-26 137.0 11.2 83 18-102 4-86 (115)
49 2jrs_A RNA-binding protein 39; 99.9 5.3E-22 1.8E-26 135.2 11.2 88 13-100 20-107 (108)
50 2dgx_A KIAA0430 protein; RRM d 99.9 5.6E-22 1.9E-26 132.2 11.1 86 13-101 3-92 (96)
51 1x4a_A Splicing factor, argini 99.9 1.3E-21 4.6E-26 133.2 13.2 86 13-101 16-101 (109)
52 1oo0_B CG8781-PA, drosophila Y 99.9 3.8E-22 1.3E-26 136.1 10.4 88 14-101 21-108 (110)
53 1x4c_A Splicing factor, argini 99.9 1.8E-21 6.3E-26 132.5 13.6 83 11-100 7-94 (108)
54 3ulh_A THO complex subunit 4; 99.9 6.7E-22 2.3E-26 134.2 11.4 84 13-97 23-106 (107)
55 2cqg_A TDP-43, TAR DNA-binding 99.9 2.9E-21 9.8E-26 130.2 14.2 90 11-102 7-96 (103)
56 3ns6_A Eukaryotic translation 99.9 1.3E-22 4.5E-27 136.4 7.3 83 17-99 4-93 (100)
57 4a8x_A RNA-binding protein wit 99.9 6.2E-22 2.1E-26 129.6 10.0 83 18-100 3-86 (88)
58 2khc_A Testis-specific RNP-typ 99.9 6.2E-22 2.1E-26 136.7 10.4 85 13-97 34-118 (118)
59 2cqp_A RNA-binding protein 12; 99.9 5.2E-22 1.8E-26 132.6 9.5 86 14-99 10-95 (98)
60 2dgv_A HnRNP M, heterogeneous 99.9 1.5E-21 5.1E-26 128.9 11.5 85 15-101 4-88 (92)
61 2dgu_A Heterogeneous nuclear r 99.9 3.5E-21 1.2E-25 129.9 13.4 81 14-102 6-86 (103)
62 2ywk_A Putative RNA-binding pr 99.9 8.3E-22 2.8E-26 130.9 10.1 85 13-98 10-94 (95)
63 3s7r_A Heterogeneous nuclear r 99.9 1.8E-21 6.1E-26 127.3 11.3 83 13-96 5-87 (87)
64 2ek1_A RNA-binding protein 12; 99.9 3.9E-22 1.3E-26 132.5 7.7 84 14-97 10-93 (95)
65 2kt5_A RNA and export factor-b 99.9 2.9E-21 9.8E-26 134.6 12.4 91 13-104 29-119 (124)
66 1x4d_A Matrin 3; structural ge 99.9 1.4E-21 4.8E-26 131.6 10.4 84 12-101 8-94 (102)
67 2fc8_A NCL protein; structure 99.9 3.3E-21 1.1E-25 129.6 12.2 87 12-101 8-94 (102)
68 2cq4_A RNA binding motif prote 99.9 1.5E-22 5.3E-27 139.0 5.5 83 18-101 24-106 (114)
69 2dgw_A Probable RNA-binding pr 99.9 4.1E-21 1.4E-25 126.6 12.2 84 14-100 5-88 (91)
70 1x4b_A Heterogeneous nuclear r 99.9 6.3E-22 2.2E-26 136.3 8.6 85 17-102 25-109 (116)
71 2fc9_A NCL protein; structure 99.9 3.6E-21 1.2E-25 129.3 12.1 87 11-101 7-93 (101)
72 2cq1_A PTB-like protein L; RRM 99.9 5.6E-21 1.9E-25 128.5 12.9 87 10-102 6-94 (101)
73 1rk8_A CG8781-PA, CG8781-PA pr 99.9 2.1E-21 7.2E-26 141.7 11.5 86 16-101 69-154 (165)
74 2dnq_A RNA-binding protein 4B; 99.9 4.2E-21 1.4E-25 126.4 11.7 80 15-102 4-83 (90)
75 3ucg_A Polyadenylate-binding p 99.9 2.2E-21 7.5E-26 127.2 10.2 81 18-99 5-85 (89)
76 1p1t_A Cleavage stimulation fa 99.9 5.9E-22 2E-26 133.8 7.6 86 16-101 5-90 (104)
77 2dgt_A RNA-binding protein 30; 99.9 5E-21 1.7E-25 126.5 12.0 82 13-102 4-85 (92)
78 3n9u_C Cleavage and polyadenyl 99.9 1.4E-21 4.9E-26 141.5 10.0 82 18-99 54-137 (156)
79 1sjq_A Polypyrimidine tract-bi 99.9 1.4E-21 4.7E-26 131.9 9.2 83 14-102 11-95 (105)
80 2cpi_A CCR4-NOT transcription 99.9 3.2E-21 1.1E-25 131.9 11.0 87 14-100 10-102 (111)
81 2cpx_A Hypothetical protein FL 99.9 6.4E-22 2.2E-26 136.0 7.3 92 13-104 19-110 (115)
82 1why_A Hypothetical protein ri 99.9 6.1E-21 2.1E-25 127.3 11.9 83 13-101 11-95 (97)
83 1wg5_A Heterogeneous nuclear r 99.9 4.3E-21 1.5E-25 129.8 11.3 89 11-101 7-96 (104)
84 2m2b_A RNA-binding protein 10; 99.9 8.1E-22 2.8E-26 138.7 7.7 89 13-102 17-111 (131)
85 3r27_A HnRNP L, heterogeneous 99.9 3.9E-21 1.3E-25 128.5 10.6 81 14-100 16-98 (100)
86 2rs2_A Musashi-1, RNA-binding 99.9 2.6E-21 8.8E-26 132.0 9.9 88 13-101 19-106 (109)
87 2kn4_A Immunoglobulin G-bindin 99.9 4.6E-21 1.6E-25 138.8 11.6 89 14-102 65-153 (158)
88 1x4e_A RNA binding motif, sing 99.9 5.1E-22 1.8E-26 129.3 5.9 82 16-97 2-83 (85)
89 1wex_A Hypothetical protein (r 99.9 6.1E-21 2.1E-25 129.1 11.2 84 13-102 9-94 (104)
90 3q2s_C Cleavage and polyadenyl 99.9 9.6E-22 3.3E-26 150.8 8.1 82 18-99 67-150 (229)
91 2lea_A Serine/arginine-rich sp 99.9 9.4E-22 3.2E-26 139.2 7.2 90 13-102 41-130 (135)
92 1wez_A HnRNP H', FTP-3, hetero 99.9 5.4E-21 1.8E-25 128.9 10.6 84 13-99 9-92 (102)
93 2dnp_A RNA-binding protein 14; 99.9 7.8E-21 2.7E-25 125.1 11.0 80 14-101 4-83 (90)
94 1s79_A Lupus LA protein; RRM, 99.9 2.2E-21 7.4E-26 131.1 8.3 82 15-98 7-88 (103)
95 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 8.4E-21 2.9E-25 134.5 11.5 85 12-96 56-140 (140)
96 2dis_A Unnamed protein product 99.8 4E-21 1.4E-25 130.8 9.4 86 17-102 6-95 (109)
97 1x5o_A RNA binding motif, sing 99.8 1.8E-20 6.1E-25 128.5 12.7 85 14-99 20-112 (114)
98 2jwn_A Embryonic polyadenylate 99.8 7.6E-21 2.6E-25 132.3 10.8 82 18-100 35-116 (124)
99 2ad9_A Polypyrimidine tract-bi 99.8 9.7E-21 3.3E-25 130.7 10.8 84 14-103 26-111 (119)
100 1wel_A RNA-binding protein 12; 99.8 1.6E-21 5.5E-26 135.9 6.9 85 14-99 20-104 (124)
101 2err_A Ataxin-2-binding protei 99.8 6.5E-21 2.2E-25 130.0 9.5 86 12-99 22-107 (109)
102 2mss_A Protein (musashi1); RNA 99.8 2.4E-21 8.1E-26 123.2 6.7 75 21-96 1-75 (75)
103 2cpj_A Non-POU domain-containi 99.8 1.7E-20 6E-25 125.5 11.3 84 12-101 8-91 (99)
104 2cpd_A Apobec-1 stimulating pr 99.8 3.4E-20 1.2E-24 124.1 12.7 81 13-101 9-91 (99)
105 2cpy_A RNA-binding protein 12; 99.8 3E-21 1E-25 132.6 7.7 87 12-100 8-95 (114)
106 2e5j_A Methenyltetrahydrofolat 99.8 1.6E-20 5.5E-25 125.3 10.9 83 13-100 13-95 (97)
107 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.1E-21 7.3E-26 130.4 6.6 84 14-99 14-98 (100)
108 1x4g_A Nucleolysin TIAR; struc 99.8 1.9E-20 6.4E-25 127.5 11.1 82 15-102 21-102 (109)
109 1wf1_A RNA-binding protein RAL 99.8 2E-20 7E-25 127.6 11.1 81 13-101 21-102 (110)
110 3beg_B Splicing factor, argini 99.8 1.8E-21 6.2E-26 134.0 5.9 77 15-98 12-93 (115)
111 2db1_A Heterogeneous nuclear r 99.8 1.1E-20 3.8E-25 130.6 9.8 85 13-99 11-98 (118)
112 2ytc_A PRE-mRNA-splicing facto 99.8 1.8E-20 6.1E-25 121.9 10.1 80 12-97 5-85 (85)
113 2lcw_A RNA-binding protein FUS 99.7 1.5E-22 5.3E-27 139.4 0.0 87 15-101 3-97 (116)
114 2nlw_A Eukaryotic translation 99.8 1.2E-20 4.1E-25 127.8 9.1 83 15-99 11-100 (105)
115 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.8E-21 1.3E-25 122.8 6.0 76 20-96 1-76 (77)
116 2ki2_A SS-DNA binding protein 99.8 1.4E-21 4.7E-26 128.6 3.9 82 20-102 2-83 (90)
117 2kvi_A Nuclear polyadenylated 99.8 1.2E-20 4.2E-25 125.7 8.4 79 15-101 6-85 (96)
118 1fj7_A Nucleolin RBD1, protein 99.8 1.9E-21 6.5E-26 130.7 4.3 85 15-101 13-97 (101)
119 2jvr_A Nucleolar protein 3; RN 99.8 9.7E-21 3.3E-25 129.4 7.8 81 15-99 24-105 (111)
120 2a3j_A U1 small nuclear ribonu 99.8 2.7E-20 9.3E-25 130.2 10.2 84 14-100 24-111 (127)
121 2hgl_A HNRPF protein, heteroge 99.8 1.3E-20 4.4E-25 133.3 8.6 84 14-99 39-125 (136)
122 1x5p_A Negative elongation fac 99.8 1.4E-19 4.8E-24 120.7 13.3 84 12-103 8-91 (97)
123 2jvo_A Nucleolar protein 3; nu 99.8 2.7E-20 9.4E-25 126.7 9.9 81 13-101 25-105 (108)
124 2cqh_A IGF-II mRNA-binding pro 99.8 2E-20 6.7E-25 123.8 9.0 81 15-102 4-86 (93)
125 2hvz_A Splicing factor, argini 99.8 2.4E-20 8.3E-25 125.2 9.3 76 20-100 1-76 (101)
126 2f3j_A RNA and export factor b 99.8 2E-20 6.7E-25 138.2 9.5 85 15-100 84-168 (177)
127 1x4f_A Matrin 3; structural ge 99.8 1.6E-20 5.6E-25 128.2 8.2 82 15-102 21-105 (112)
128 2wbr_A GW182, gawky, LD47780P; 99.8 3.3E-20 1.1E-24 120.3 9.1 74 18-97 6-79 (89)
129 2la4_A Nuclear and cytoplasmic 99.8 2.5E-20 8.5E-25 125.1 8.7 79 15-99 23-101 (101)
130 2e5g_A U6 snRNA-specific termi 99.8 7.9E-20 2.7E-24 121.2 11.1 81 16-102 5-85 (94)
131 1fjc_A Nucleolin RBD2, protein 99.8 2.7E-20 9.2E-25 123.8 8.3 83 13-100 10-92 (96)
132 2xnq_A Nuclear polyadenylated 99.8 9.5E-20 3.2E-24 121.7 10.9 79 13-99 16-95 (97)
133 1nu4_A U1A RNA binding domain; 99.8 1.8E-20 6.2E-25 124.8 7.3 83 15-100 4-90 (97)
134 3lqv_A PRE-mRNA branch site pr 99.8 6.6E-20 2.2E-24 125.9 10.0 83 15-100 4-86 (115)
135 2krb_A Eukaryotic translation 99.8 1.6E-20 5.5E-25 121.2 6.2 73 19-93 1-80 (81)
136 2dnn_A RNA-binding protein 12; 99.8 4E-20 1.4E-24 126.0 8.4 81 16-99 13-93 (109)
137 2lmi_A GRSF-1, G-rich sequence 99.8 1.4E-20 4.9E-25 127.8 6.1 85 13-99 5-92 (107)
138 4f02_A Polyadenylate-binding p 99.8 1.2E-19 4.3E-24 137.4 11.7 85 15-99 11-95 (213)
139 2e44_A Insulin-like growth fac 99.8 1.1E-19 3.7E-24 120.9 9.9 83 13-99 9-92 (96)
140 1iqt_A AUF1, heterogeneous nuc 99.8 1.3E-20 4.4E-25 119.7 4.9 75 21-96 1-75 (75)
141 2hgn_A Heterogeneous nuclear r 99.8 9.6E-21 3.3E-25 134.4 4.4 84 14-100 41-124 (139)
142 2cq2_A Hypothetical protein LO 99.8 1E-19 3.4E-24 124.5 8.6 84 14-103 20-110 (114)
143 2qfj_A FBP-interacting repress 99.8 3.7E-19 1.3E-23 134.2 12.5 89 17-105 123-211 (216)
144 2xs2_A Deleted in azoospermia- 99.8 4E-20 1.4E-24 124.4 6.2 85 14-101 4-88 (102)
145 3md3_A Nuclear and cytoplasmic 99.8 5.5E-19 1.9E-23 127.7 12.3 84 14-97 82-165 (166)
146 3egn_A RNA-binding protein 40; 99.8 3.5E-20 1.2E-24 132.1 5.7 88 14-102 40-133 (143)
147 1whx_A Hypothetical protein ri 99.8 1.8E-19 6.2E-24 123.2 9.0 77 18-100 9-85 (111)
148 2i2y_A Fusion protein consists 99.8 2.6E-19 8.7E-24 128.6 10.2 82 13-99 67-148 (150)
149 2hgm_A HNRPF protein, heteroge 99.8 8.1E-20 2.8E-24 127.5 6.7 84 13-99 36-121 (126)
150 1b7f_A Protein (SXL-lethal pro 99.8 4.7E-19 1.6E-23 128.5 11.0 84 18-101 2-85 (168)
151 2dha_A FLJ20171 protein; RRM d 99.8 7.1E-20 2.4E-24 127.4 6.1 82 16-99 20-105 (123)
152 1fxl_A Paraneoplastic encephal 99.8 7.8E-19 2.7E-23 127.0 11.8 82 19-100 2-83 (167)
153 1wg1_A KIAA1579 protein, homol 99.8 4.8E-19 1.6E-23 116.0 8.8 76 18-100 4-79 (88)
154 2yh0_A Splicing factor U2AF 65 99.8 1.1E-18 3.7E-23 130.0 11.7 85 17-101 112-196 (198)
155 2e5i_A Heterogeneous nuclear r 99.8 1.8E-18 6.3E-23 120.1 12.0 80 15-100 19-103 (124)
156 1sjr_A Polypyrimidine tract-bi 99.8 7.4E-19 2.5E-23 127.2 10.3 80 17-100 44-125 (164)
157 3zzy_A Polypyrimidine tract-bi 99.8 1.1E-18 3.7E-23 121.9 10.8 79 17-100 26-107 (130)
158 1l3k_A Heterogeneous nuclear r 99.8 8.1E-19 2.8E-23 130.4 10.7 86 16-102 101-186 (196)
159 2bz2_A Negative elongation fac 99.8 9.2E-19 3.1E-23 121.5 9.7 82 14-103 34-115 (121)
160 1l3k_A Heterogeneous nuclear r 99.8 1.1E-18 3.7E-23 129.7 10.3 87 13-100 7-93 (196)
161 2g4b_A Splicing factor U2AF 65 99.8 1.8E-18 6.1E-23 126.0 11.1 81 16-96 91-171 (172)
162 2diu_A KIAA0430 protein; struc 99.8 3E-18 1E-22 112.2 10.6 76 16-101 5-86 (96)
163 3d2w_A TAR DNA-binding protein 99.8 1.5E-18 5.2E-23 114.0 9.0 80 13-101 5-86 (89)
164 2j8a_A Histone-lysine N-methyl 99.8 9.6E-19 3.3E-23 120.9 8.0 78 20-97 3-94 (136)
165 2dnl_A Cytoplasmic polyadenyla 99.8 1.5E-18 5.1E-23 119.1 8.9 80 15-97 4-86 (114)
166 4f02_A Polyadenylate-binding p 99.8 2.3E-18 8E-23 130.3 10.4 81 18-100 102-182 (213)
167 1wf0_A TDP-43, TAR DNA-binding 99.8 6.9E-19 2.3E-23 115.2 6.5 79 17-102 3-81 (88)
168 2cjk_A Nuclear polyadenylated 99.8 9.9E-19 3.4E-23 126.8 7.5 81 18-99 86-166 (167)
169 3tyt_A Heterogeneous nuclear r 99.8 2.6E-18 8.8E-23 129.6 10.0 79 17-100 2-81 (205)
170 1b7f_A Protein (SXL-lethal pro 99.8 8.2E-18 2.8E-22 121.9 11.8 81 16-96 86-168 (168)
171 2qfj_A FBP-interacting repress 99.8 4.6E-18 1.6E-22 128.1 10.0 83 17-99 26-108 (216)
172 2hzc_A Splicing factor U2AF 65 99.7 3.2E-18 1.1E-22 111.5 7.2 73 16-95 3-86 (87)
173 3md3_A Nuclear and cytoplasmic 99.7 1.1E-17 3.6E-22 120.9 10.6 81 20-101 1-81 (166)
174 1fxl_A Paraneoplastic encephal 99.7 1.2E-17 4E-22 120.8 10.7 81 16-96 85-167 (167)
175 2pe8_A Splicing factor 45; RRM 99.7 2E-17 6.7E-22 111.9 11.0 82 17-98 6-93 (105)
176 3nmr_A Cugbp ELAV-like family 99.7 1.8E-17 6.2E-22 120.7 10.4 84 18-101 2-90 (175)
177 3nmr_A Cugbp ELAV-like family 99.7 2E-17 6.9E-22 120.5 10.6 82 15-97 91-175 (175)
178 3pgw_A U1-A; protein-RNA compl 99.7 2.9E-17 1E-21 128.9 11.5 84 14-100 4-91 (282)
179 1fje_B Nucleolin RBD12, protei 99.7 1.6E-17 5.5E-22 121.4 9.3 80 15-99 95-174 (175)
180 3u1l_A PRE-mRNA-splicing facto 99.7 1.4E-17 4.9E-22 127.8 9.4 81 15-101 130-231 (240)
181 2adc_A Polypyrimidine tract-bi 99.7 4.8E-17 1.6E-21 124.4 10.2 82 14-100 29-111 (229)
182 2dit_A HIV TAT specific factor 99.7 2.5E-16 8.4E-21 107.6 12.7 84 14-101 10-104 (112)
183 2cjk_A Nuclear polyadenylated 99.7 1.6E-17 5.6E-22 120.3 7.2 80 18-99 2-81 (167)
184 2voo_A Lupus LA protein; RNA-b 99.7 7.4E-17 2.5E-21 120.5 10.9 78 19-98 109-186 (193)
185 2ghp_A U4/U6 snRNA-associated 99.7 3E-17 1E-21 129.5 9.1 84 15-99 206-291 (292)
186 3pgw_A U1-A; protein-RNA compl 99.7 1E-16 3.5E-21 125.8 11.1 78 15-97 203-281 (282)
187 3smz_A Protein raver-1, ribonu 99.7 1.2E-16 4.2E-21 125.5 11.4 87 14-101 179-266 (284)
188 3smz_A Protein raver-1, ribonu 99.7 2.2E-16 7.6E-21 124.0 12.1 85 17-101 93-177 (284)
189 1fje_B Nucleolin RBD12, protei 99.7 2E-17 6.8E-22 120.9 4.0 86 14-101 8-93 (175)
190 1qm9_A Polypyrimidine tract-bi 99.7 1.3E-16 4.6E-21 118.9 7.9 78 18-100 2-80 (198)
191 3tyt_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 120.2 7.6 78 17-96 121-204 (205)
192 2adc_A Polypyrimidine tract-bi 99.7 3.9E-16 1.3E-20 119.3 10.3 78 17-99 149-228 (229)
193 1qm9_A Polypyrimidine tract-bi 99.7 2.2E-16 7.7E-21 117.7 8.6 78 17-99 118-197 (198)
194 3sde_A Paraspeckle component 1 99.7 4.2E-16 1.4E-20 121.4 9.9 79 14-98 17-95 (261)
195 3v4m_A Splicing factor U2AF 65 99.7 5.3E-16 1.8E-20 104.8 8.7 82 17-98 3-96 (105)
196 3sde_A Paraspeckle component 1 99.6 7.5E-16 2.6E-20 119.9 9.7 83 18-101 95-181 (261)
197 3ue2_A Poly(U)-binding-splicin 99.6 1.5E-15 5E-20 104.7 9.6 81 18-98 19-108 (118)
198 2ghp_A U4/U6 snRNA-associated 99.6 9.2E-16 3.1E-20 120.9 9.0 83 18-101 116-199 (292)
199 2d9o_A DNAJ (HSP40) homolog, s 99.6 7.7E-15 2.6E-19 98.2 11.7 77 19-102 10-93 (100)
200 1jmt_A Splicing factor U2AF 35 99.6 2.7E-16 9.1E-21 106.2 4.5 72 24-96 20-103 (104)
201 2g4b_A Splicing factor U2AF 65 99.6 1.5E-15 5E-20 110.4 8.4 76 18-100 3-89 (172)
202 2yh0_A Splicing factor U2AF 65 99.6 2.1E-15 7.3E-20 112.0 8.6 76 18-100 3-89 (198)
203 3tht_A Alkylated DNA repair pr 99.6 5.2E-15 1.8E-19 119.1 8.5 79 13-97 12-97 (345)
204 3s6e_A RNA-binding protein 39; 99.5 7.4E-14 2.5E-18 95.5 9.0 80 15-98 3-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.5 1.4E-13 4.9E-18 94.6 9.4 80 13-98 12-95 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 1.2E-12 4E-17 84.9 8.3 76 16-100 4-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.3 7.8E-12 2.7E-16 81.4 5.7 74 15-97 11-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.2 1.3E-10 4.4E-15 88.1 8.8 67 31-97 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.9 1.4E-08 4.8E-13 67.5 8.7 74 16-95 18-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.3 1.1E-05 3.8E-10 53.1 9.9 74 17-99 6-84 (104)
211 1wey_A Calcipressin 1; structu 98.2 4.4E-06 1.5E-10 55.2 7.0 76 18-99 4-84 (104)
212 1whv_A Poly(A)-specific ribonu 98.2 8E-06 2.7E-10 53.1 7.6 56 18-82 15-70 (100)
213 1uw4_A UPF3X; nonsense mediate 98.2 1.9E-05 6.6E-10 51.1 9.3 80 20-99 2-88 (91)
214 1wwh_A Nucleoporin 35, nucleop 98.0 2.6E-05 8.9E-10 52.9 7.8 73 16-96 21-94 (119)
215 3ctr_A Poly(A)-specific ribonu 97.9 1.5E-05 5.2E-10 52.0 5.3 54 20-82 7-60 (101)
216 2l08_A Regulator of nonsense t 97.8 6.2E-05 2.1E-09 49.1 6.0 79 19-97 9-94 (97)
217 3p3d_A Nucleoporin 53; structu 97.5 0.00012 4E-09 50.3 4.4 78 18-97 6-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.2 0.00023 7.9E-09 59.2 3.5 54 20-79 54-107 (464)
219 2kn4_A Immunoglobulin G-bindin 96.8 0.0017 5.8E-08 45.8 4.8 35 48-84 2-36 (158)
220 2i2y_A Fusion protein consists 96.6 0.0011 3.7E-08 46.5 2.6 40 58-98 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 95.3 0.062 2.1E-06 45.3 8.0 56 19-83 440-495 (507)
222 2g0c_A ATP-dependent RNA helic 93.9 0.17 5.9E-06 30.9 5.7 68 21-97 2-75 (76)
223 3pgw_S U1-70K; protein-RNA com 93.1 0.54 1.8E-05 38.8 9.0 9 71-79 116-124 (437)
224 4eyt_A Telomerase associated p 92.1 1.5 5E-05 27.9 8.5 72 15-94 8-86 (129)
225 3fry_A Probable copper-exporti 70.6 13 0.00044 21.5 6.4 54 20-80 7-60 (73)
226 4e8u_A Putative uncharacterize 65.1 17 0.00058 25.9 5.7 48 20-70 13-71 (172)
227 3lpe_A Putative transcription 63.0 16 0.00056 22.9 5.0 34 46-84 40-73 (92)
228 3ts2_A Protein LIN-28 homolog 59.1 1.5 5.1E-05 30.5 -0.6 28 34-69 2-29 (148)
229 1xn9_A 30S ribosomal protein S 57.6 35 0.0012 21.9 6.2 48 29-77 28-80 (101)
230 2v94_A RPS24, 30S ribosomal pr 57.0 34 0.0012 22.3 5.7 46 30-76 38-88 (107)
231 2cu1_A Mitogen-activated prote 56.8 36 0.0012 21.8 6.1 65 26-99 23-88 (103)
232 4a4j_A Pacszia, cation-transpo 56.4 24 0.00082 19.7 5.0 55 20-80 4-61 (69)
233 3h7h_B Transcription elongatio 55.0 25 0.00085 22.8 4.8 35 45-84 40-74 (106)
234 4bby_A Alkyldihydroxyacetoneph 52.0 16 0.00056 31.5 4.6 56 27-83 351-410 (658)
235 3u5c_Y RP50, 40S ribosomal pro 51.9 53 0.0018 22.3 6.5 47 29-76 33-84 (135)
236 1vd2_A Protein kinase C, IOTA 50.3 42 0.0014 21.0 5.2 55 22-81 17-74 (89)
237 3ced_A Methionine import ATP-b 49.4 31 0.0011 21.7 4.6 61 21-83 22-87 (98)
238 1ywx_A 30S ribosomal protein S 48.9 51 0.0017 21.2 5.5 47 29-76 28-79 (102)
239 2okq_A Hypothetical protein YB 48.6 62 0.0021 22.1 6.1 47 35-81 49-110 (141)
240 4hhu_A OR280; engineered prote 48.0 58 0.002 21.6 6.1 70 21-95 44-128 (170)
241 2xzm_P RPS24E; ribosome, trans 46.9 54 0.0018 22.7 5.7 46 30-76 32-82 (149)
242 3dxs_X Copper-transporting ATP 45.7 40 0.0014 19.1 7.0 56 20-81 4-63 (74)
243 2lfv_A Protein DAMX; cell divi 48.9 5.1 0.00017 26.1 0.0 64 18-85 24-88 (106)
244 3uzu_A Ribosomal RNA small sub 41.6 19 0.00064 27.5 3.0 33 20-52 115-147 (279)
245 1x60_A Sporulation-specific N- 41.0 51 0.0018 19.4 4.5 66 16-86 6-71 (79)
246 2exu_A Transcription initiatio 40.9 36 0.0012 24.8 4.3 25 60-84 148-172 (200)
247 3e6i_A CYPIIE1, P450-J, cytoch 40.5 35 0.0012 27.2 4.7 50 21-79 18-70 (476)
248 2cs4_A Protein C12ORF2; GTP bi 37.9 18 0.00063 23.0 2.0 22 24-45 21-43 (95)
249 3fut_A Dimethyladenosine trans 37.5 32 0.0011 26.1 3.7 31 19-50 110-140 (271)
250 2e7g_A Putative ribosome-bindi 36.3 79 0.0027 21.0 5.2 36 43-82 43-79 (129)
251 3pm9_A Putative oxidoreductase 36.2 63 0.0022 26.6 5.6 54 28-82 195-252 (476)
252 2g9o_A Copper-transporting ATP 36.1 69 0.0024 19.1 5.1 56 20-81 5-64 (90)
253 3swz_A Steroid 17-alpha-hydrox 35.8 55 0.0019 26.3 5.2 58 21-88 16-77 (494)
254 2k2p_A Uncharacterized protein 34.4 44 0.0015 20.0 3.5 59 17-81 21-80 (85)
255 2kt2_A Mercuric reductase; nme 34.1 58 0.002 17.6 5.1 53 21-79 3-58 (69)
256 1yg0_A COP associated protein; 33.9 56 0.0019 17.4 6.3 55 21-81 4-61 (66)
257 2ns6_A Mobilization protein A; 33.5 1.3E+02 0.0043 21.4 6.2 48 21-71 72-127 (185)
258 1qyr_A KSGA, high level kasuga 33.0 45 0.0015 24.8 3.9 30 20-49 91-120 (252)
259 2xmw_A PACS-N, cation-transpor 32.8 62 0.0021 17.5 5.8 55 20-80 5-62 (71)
260 2e5p_A Protein PHF1, PHD finge 32.4 18 0.00062 21.3 1.2 11 61-71 37-47 (68)
261 1wvf_A 4-cresol dehydrogenase 32.3 38 0.0013 28.2 3.7 44 35-79 217-262 (520)
262 3tqs_A Ribosomal RNA small sub 31.7 23 0.00077 26.6 2.0 32 21-52 98-129 (255)
263 2qrr_A Methionine import ATP-b 31.3 97 0.0033 19.3 5.5 63 21-83 25-89 (101)
264 3dhx_A Methionine import ATP-b 31.0 46 0.0016 21.2 3.2 55 30-84 32-88 (106)
265 2g1d_A 30S ribosomal protein S 30.3 44 0.0015 21.3 2.9 45 30-75 30-79 (98)
266 2j5a_A 30S ribosomal protein S 29.6 1.1E+02 0.0039 19.6 7.6 56 21-78 12-82 (110)
267 3ftd_A Dimethyladenosine trans 29.2 45 0.0015 24.8 3.3 30 20-49 96-125 (249)
268 3d53_A Inorganic pyrophosphata 29.1 71 0.0024 22.6 4.1 39 33-82 132-170 (173)
269 2ew9_A Copper-transporting ATP 28.4 1.2E+02 0.0041 19.5 5.9 56 20-81 82-141 (149)
270 3pm0_A Cypib1, cytochrome P450 27.8 93 0.0032 24.9 5.3 50 21-79 17-68 (507)
271 1aw0_A Menkes copper-transport 27.8 78 0.0027 17.1 5.2 55 21-81 6-64 (72)
272 1y3j_A Copper-transporting ATP 27.1 87 0.003 17.4 4.7 55 21-81 6-64 (77)
273 2l3m_A Copper-ION-binding prot 27.0 81 0.0028 17.1 6.7 55 20-80 7-65 (71)
274 1q8l_A Copper-transporting ATP 26.8 96 0.0033 17.8 7.2 56 20-81 11-70 (84)
275 1cqm_A Ribosomal protein S6; a 26.6 1.2E+02 0.0042 19.0 5.3 56 21-79 6-76 (101)
276 3lo3_A Uncharacterized conserv 26.5 1.2E+02 0.0041 18.8 5.5 19 61-79 53-71 (94)
277 3bb5_A Stress responsive alpha 26.4 1.4E+02 0.0046 19.4 7.6 56 21-76 23-89 (121)
278 2uuu_A Alkyldihydroxyacetoneph 26.1 57 0.002 27.7 3.8 50 32-82 286-339 (584)
279 2kyz_A Heavy metal binding pro 25.8 74 0.0025 17.3 3.2 52 21-79 4-55 (67)
280 1p6t_A Potential copper-transp 25.7 1.4E+02 0.0047 19.3 6.8 55 21-81 77-135 (151)
281 1i4w_A Mitochondrial replicati 25.7 60 0.002 25.7 3.6 22 21-42 144-165 (353)
282 2ofg_X Zinc-transporting ATPas 25.6 1.3E+02 0.0043 18.8 7.2 55 20-80 10-68 (111)
283 2m0o_A PHD finger protein 1; t 25.5 25 0.00086 21.3 1.0 11 61-71 54-64 (79)
284 2prd_A Pyrophosphate phosphohy 25.4 61 0.0021 23.0 3.2 41 33-82 129-169 (174)
285 1qez_A Ppase, S-ppase, protein 25.4 91 0.0031 22.0 4.1 39 33-82 128-166 (173)
286 2c60_A Human mitogen-activated 25.1 1.4E+02 0.0048 19.2 4.5 50 26-83 46-96 (111)
287 2qsw_A Methionine import ATP-b 25.0 1E+02 0.0035 19.1 4.1 63 21-83 25-89 (100)
288 1o57_A PUR operon repressor; p 25.0 1.5E+02 0.0052 22.5 5.7 42 36-82 47-88 (291)
289 3bgu_A Ferredoxin-like protein 24.9 1.4E+02 0.0049 19.1 6.4 54 22-76 25-88 (116)
290 3bde_A MLL5499 protein; stress 24.4 1.5E+02 0.0051 19.2 6.5 55 22-76 24-86 (120)
291 1cpz_A Protein (COPZ); copper 24.4 89 0.003 16.6 7.5 54 20-79 2-59 (68)
292 3mfb_A Uncharacterized protein 23.7 1.6E+02 0.0053 20.5 5.0 37 31-67 3-42 (157)
293 2exr_A Cytokinin dehydrogenase 23.7 2.4E+02 0.0081 23.4 7.1 50 33-83 211-264 (524)
294 2kpo_A Rossmann 2X2 fold prote 23.6 88 0.003 19.1 3.2 50 31-93 33-83 (110)
295 3bsu_A Ribonuclease H1, RNAse 23.4 1E+02 0.0035 17.0 4.9 41 22-79 8-49 (53)
296 3n9y_A Cholesterol SIDE-chain 23.4 1.3E+02 0.0045 23.8 5.4 38 33-79 35-72 (487)
297 1e8g_A Vanillyl-alcohol oxidas 23.3 40 0.0014 28.4 2.3 43 36-79 250-294 (560)
298 2npt_B Mitogen-activated prote 23.3 1.5E+02 0.0051 18.8 5.6 50 26-83 35-85 (100)
299 3j21_T 50S ribosomal protein L 23.3 1.4E+02 0.0047 18.4 4.6 54 24-80 27-82 (86)
300 1osd_A MERP, hypothetical prot 23.2 98 0.0034 16.7 7.3 55 21-81 6-64 (72)
301 2lsl_A Telomerase associated p 28.8 18 0.0006 23.1 0.0 23 61-83 77-99 (137)
302 2cfx_A HTH-type transcriptiona 22.9 1.7E+02 0.0057 19.2 8.1 47 33-83 78-124 (144)
303 3tbg_A Cytochrome P450 2D6; mo 22.6 81 0.0028 25.0 3.9 48 23-79 20-70 (479)
304 3rfw_A Cell-binding factor 2; 22.5 1.9E+02 0.0064 21.1 5.7 45 30-82 90-134 (252)
305 3cjk_B Copper-transporting ATP 22.4 1.1E+02 0.0037 16.8 6.8 55 21-81 5-63 (75)
306 1uta_A FTSN, MSGA, cell divisi 22.2 15 0.00053 22.1 -0.4 67 17-88 7-73 (81)
307 1kvi_A Copper-transporting ATP 22.1 1.1E+02 0.0039 17.0 7.1 56 20-81 10-69 (79)
308 3fjv_A Uncharacterized novel p 21.8 1.1E+02 0.0037 22.2 3.9 46 32-84 66-111 (194)
309 2e5q_A PHD finger protein 19; 21.7 13 0.00044 21.6 -0.7 11 61-71 35-45 (63)
310 2eqj_A Metal-response element- 21.5 37 0.0013 20.0 1.2 10 61-70 41-50 (66)
311 1q1o_A Cell division control p 21.3 1.1E+02 0.0039 19.4 3.6 50 27-81 29-85 (98)
312 2i9x_A Putative septation prot 21.0 1.6E+02 0.0054 18.2 4.2 26 45-70 5-30 (87)
313 4id3_A DNA repair protein REV1 20.7 1.3E+02 0.0046 17.8 3.9 31 15-46 6-36 (92)
314 2od0_A Hypothetical protein VP 20.5 1.1E+02 0.0037 19.3 3.5 21 31-51 4-24 (105)
315 2rf4_B DNA-directed RNA polyme 20.5 83 0.0028 19.5 2.7 30 14-43 14-43 (87)
316 3ulj_A LIN28B, DNA-binding pro 20.0 81 0.0028 19.6 2.7 7 61-67 20-26 (90)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.93 E-value=5.2e-25 Score=183.33 Aligned_cols=92 Identities=24% Similarity=0.412 Sum_probs=84.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
...+.++|||+|||+.||+++|+++|.+||.|+.|.|+.+..+++++|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCC
Q 029810 95 RSRRKRPRTPTP 106 (187)
Q Consensus 95 ~a~~~~~~~~~~ 106 (187)
+++++......+
T Consensus 178 ~a~~~~~~~~~~ 189 (437)
T 3pgw_S 178 VERGRTVKGWRP 189 (437)
T ss_pred EeCCCCCCCCCC
Confidence 999776654433
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=146.33 Aligned_cols=82 Identities=33% Similarity=0.417 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
-.+++|||+|||.++|+++|+++|++||+|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 029810 97 RR 98 (187)
Q Consensus 97 ~~ 98 (187)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.91 E-value=4.7e-24 Score=154.44 Aligned_cols=88 Identities=27% Similarity=0.412 Sum_probs=82.4
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
....+.++|||+|||.++++++|+++|++||+|..|.|+.+..++.+++||||+|.+.++|++||+.|++..|.|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 029810 94 ERSRRKRP 101 (187)
Q Consensus 94 ~~a~~~~~ 101 (187)
+++++...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99986543
No 4
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.91 E-value=1.4e-23 Score=141.71 Aligned_cols=93 Identities=27% Similarity=0.393 Sum_probs=85.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
...+..+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34456778999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCC
Q 029810 92 TVERSRRKRPRTP 104 (187)
Q Consensus 92 ~v~~a~~~~~~~~ 104 (187)
.|++++++....+
T Consensus 88 ~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 88 NVEWAKPSTNSGP 100 (103)
T ss_dssp EEEESSCCCCSCC
T ss_pred EEEECCCCCCCCC
Confidence 9999987765443
No 5
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=4.4e-23 Score=137.08 Aligned_cols=87 Identities=29% Similarity=0.398 Sum_probs=81.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
..+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|.|+.|.|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 029810 96 SRRKRPR 102 (187)
Q Consensus 96 a~~~~~~ 102 (187)
++++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876543
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.90 E-value=3.2e-23 Score=141.75 Aligned_cols=84 Identities=24% Similarity=0.296 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+..|+.++|||||+|++.++|++||+.||+..|.|+.|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 029810 96 SRRK 99 (187)
Q Consensus 96 a~~~ 99 (187)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8754
No 7
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.90 E-value=4.3e-23 Score=141.96 Aligned_cols=92 Identities=24% Similarity=0.391 Sum_probs=84.8
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
..+..+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCC
Q 029810 93 VERSRRKRPRTP 104 (187)
Q Consensus 93 v~~a~~~~~~~~ 104 (187)
|++++++....+
T Consensus 99 V~~a~~~~~~~~ 110 (115)
T 2cpz_A 99 VQLKRSKNDSKS 110 (115)
T ss_dssp EECCCCSCCCCC
T ss_pred EEEcCCCCcCCC
Confidence 999998766544
No 8
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=7.6e-23 Score=138.02 Aligned_cols=93 Identities=27% Similarity=0.420 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 10 RGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 10 ~~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
.....+..+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++.+++||||+|.+.++|++||+.||+..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 6 SGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 344555678899999999999999999999999999999999987 788999999999999999999999999999999
Q ss_pred EEEEEeccCCCCCCC
Q 029810 90 YITVERSRRKRPRTP 104 (187)
Q Consensus 90 ~l~v~~a~~~~~~~~ 104 (187)
.|.|++++++..+..
T Consensus 84 ~l~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 84 PLYVALAQRKEERQS 98 (103)
T ss_dssp BCEEEECSSCCCCCC
T ss_pred EEEEEEecccccCCC
Confidence 999999998765443
No 9
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=140.22 Aligned_cols=91 Identities=30% Similarity=0.436 Sum_probs=84.2
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.++..+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34566789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 029810 93 VERSRRKRPRT 103 (187)
Q Consensus 93 v~~a~~~~~~~ 103 (187)
|++++......
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dnm_A 87 VQVARYGRRDL 97 (103)
T ss_dssp EEECSSCCSCC
T ss_pred EEECCcCCCCC
Confidence 99998765443
No 10
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.90 E-value=1.8e-22 Score=138.82 Aligned_cols=93 Identities=27% Similarity=0.419 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 10 RGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 10 ~~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
.....+..+.++|||+|||.++++++|+++|.+||.|..|.|+.+..++.+++||||+|.+.++|++||+.|++..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 6 SGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp CSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34455667889999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EEEEEeccCCCCC
Q 029810 90 YITVERSRRKRPR 102 (187)
Q Consensus 90 ~l~v~~a~~~~~~ 102 (187)
.|.|++++++...
T Consensus 86 ~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 86 QIRTNWATRKPPA 98 (115)
T ss_dssp ECEEEESSCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999876543
No 11
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.90 E-value=1.1e-22 Score=137.66 Aligned_cols=91 Identities=23% Similarity=0.372 Sum_probs=83.0
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC---eE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG---RY 90 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g---~~ 90 (187)
....+.++|||+|||.++++++|+++|++||.|..|.|+.+. ++.+++||||+|.+.++|++||+.||+..|.+ +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 345678999999999999999999999999999999999887 78899999999999999999999999999988 99
Q ss_pred EEEEeccCCCCCCCC
Q 029810 91 ITVERSRRKRPRTPT 105 (187)
Q Consensus 91 l~v~~a~~~~~~~~~ 105 (187)
|.|++++++..+.+.
T Consensus 89 l~V~~a~~~~~~~~~ 103 (105)
T 2dnh_A 89 LVVKFADTDKESGPS 103 (105)
T ss_dssp CEEEESCSSCCCSCS
T ss_pred EEEEECccCcccCCC
Confidence 999999987765443
No 12
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=3.2e-23 Score=139.62 Aligned_cols=91 Identities=31% Similarity=0.449 Sum_probs=84.2
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.....+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34556789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 029810 93 VERSRRKRPRT 103 (187)
Q Consensus 93 v~~a~~~~~~~ 103 (187)
|++++++....
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 2cqb_A 86 VNLAKPMRIKE 96 (102)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998776543
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=8.9e-23 Score=136.73 Aligned_cols=89 Identities=20% Similarity=0.509 Sum_probs=82.7
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.+..+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+ |++..|.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345678999999999999999999999999999999999998899999999999999999999999 9999999999999
Q ss_pred EeccCCCCCC
Q 029810 94 ERSRRKRPRT 103 (187)
Q Consensus 94 ~~a~~~~~~~ 103 (187)
++++++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999776543
No 14
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=1.3e-22 Score=139.78 Aligned_cols=91 Identities=26% Similarity=0.391 Sum_probs=83.0
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 10 RGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 10 ~~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
........+.++|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.|++ .|.|+
T Consensus 8 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 8 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp CCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 33455667789999999999999999999999999999999999998999999999999999999999999998 89999
Q ss_pred EEEEEeccCCCC
Q 029810 90 YITVERSRRKRP 101 (187)
Q Consensus 90 ~l~v~~a~~~~~ 101 (187)
.|.|+++.....
T Consensus 87 ~l~V~~a~~~~~ 98 (116)
T 2cqd_A 87 KANVNLAYLGAK 98 (116)
T ss_dssp ECEEEESTTTCC
T ss_pred EEEEEEcccCCC
Confidence 999999986543
No 15
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=7.5e-23 Score=137.03 Aligned_cols=88 Identities=31% Similarity=0.412 Sum_probs=82.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
...+.++|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45677999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 029810 95 RSRRKRPR 102 (187)
Q Consensus 95 ~a~~~~~~ 102 (187)
+++++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99877554
No 16
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=5.4e-23 Score=138.47 Aligned_cols=90 Identities=31% Similarity=0.554 Sum_probs=83.5
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.....+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 44566789999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 029810 93 VERSRRKRPR 102 (187)
Q Consensus 93 v~~a~~~~~~ 102 (187)
|++++++...
T Consensus 86 v~~a~~~~~~ 95 (102)
T 1x5s_A 86 VDQAGKSSDN 95 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 17
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=9.2e-23 Score=138.42 Aligned_cols=93 Identities=22% Similarity=0.358 Sum_probs=85.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHHHh-CCCccC
Q 029810 10 RGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVE-PRTRISRGFAFVTMDGVEDAERCIKYL-NQSVLE 87 (187)
Q Consensus 10 ~~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~~~~~~g~afV~f~~~~~a~~ai~~l-~g~~i~ 87 (187)
........+.++|||+|||.++++++|+++|++||.|..|.|+.+ ..++.+++||||+|.+.++|++||+.| |+..|.
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 6 SGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 334556678899999999999999999999999999999999988 778999999999999999999999999 999999
Q ss_pred CeEEEEEeccCCCCC
Q 029810 88 GRYITVERSRRKRPR 102 (187)
Q Consensus 88 g~~l~v~~a~~~~~~ 102 (187)
|+.|.|++++++...
T Consensus 86 g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 86 GRRLVLEWADSEVTV 100 (107)
T ss_dssp SCBCEEEECCCCCCC
T ss_pred CCEEEEEeCCCCCCC
Confidence 999999999877554
No 18
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=8.4e-23 Score=138.23 Aligned_cols=90 Identities=28% Similarity=0.388 Sum_probs=83.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
...+..+.++|||+|||+++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34556778999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 029810 92 TVERSRRKRP 101 (187)
Q Consensus 92 ~v~~a~~~~~ 101 (187)
.|++++++..
T Consensus 88 ~v~~a~~~~~ 97 (105)
T 1x5u_A 88 RVNKASAHNK 97 (105)
T ss_dssp EEEETTTTSC
T ss_pred EEEECCCCCc
Confidence 9999987654
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.5e-22 Score=135.85 Aligned_cols=89 Identities=21% Similarity=0.331 Sum_probs=82.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
...+..+.++|||+|||.++++++|+++|++||.|..|.|+.+. ++.+++||||+|.+.++|++||+.|++..|.|+.|
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34556678999999999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 029810 92 TVERSRRKRP 101 (187)
Q Consensus 92 ~v~~a~~~~~ 101 (187)
.|++++++..
T Consensus 89 ~v~~a~~~~~ 98 (100)
T 2do4_A 89 KVAISNSGPS 98 (100)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCCCCC
Confidence 9999987654
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.4e-22 Score=138.36 Aligned_cols=93 Identities=24% Similarity=0.380 Sum_probs=85.4
Q ss_pred CCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC------CC
Q 029810 11 GRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN------QS 84 (187)
Q Consensus 11 ~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~------g~ 84 (187)
....+..+.++|||+|||+++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|+ +.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 344566778999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccCCeEEEEEeccCCCCCC
Q 029810 85 VLEGRYITVERSRRKRPRT 103 (187)
Q Consensus 85 ~i~g~~l~v~~a~~~~~~~ 103 (187)
.|+|+.|.|.++.++....
T Consensus 87 ~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 87 KLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp ESSSCEEEEECCCCCCCCC
T ss_pred EEcCEEEEEEECCCCccCC
Confidence 9999999999998775543
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=5.7e-23 Score=134.32 Aligned_cols=84 Identities=26% Similarity=0.365 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
..+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|++.||+..|.|+.|.|++
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 029810 96 SRRK 99 (187)
Q Consensus 96 a~~~ 99 (187)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9865
No 22
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.89 E-value=3.5e-23 Score=144.61 Aligned_cols=89 Identities=26% Similarity=0.446 Sum_probs=82.6
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
....+.++|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 44556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 029810 94 ERSRRKRPR 102 (187)
Q Consensus 94 ~~a~~~~~~ 102 (187)
++++++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876543
No 23
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.89 E-value=1.4e-22 Score=143.86 Aligned_cols=89 Identities=26% Similarity=0.337 Sum_probs=83.1
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
++..+.++|||+|||.++++++|+++|+.||+|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 029810 94 ERSRRKRPR 102 (187)
Q Consensus 94 ~~a~~~~~~ 102 (187)
++++++..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876544
No 24
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.1e-22 Score=135.06 Aligned_cols=89 Identities=39% Similarity=0.543 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 10 RGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 10 ~~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
.....+..+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|.|+
T Consensus 6 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 6 SGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34455677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccC
Q 029810 90 YITVERSRR 98 (187)
Q Consensus 90 ~l~v~~a~~ 98 (187)
.|.|++++.
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999874
No 25
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=139.83 Aligned_cols=85 Identities=31% Similarity=0.558 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
+.++.++|||+|||.++++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|++..|.|+.|.|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred eccCCC
Q 029810 95 RSRRKR 100 (187)
Q Consensus 95 ~a~~~~ 100 (187)
+++++.
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 998654
No 26
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.89 E-value=5e-23 Score=144.64 Aligned_cols=93 Identities=42% Similarity=0.557 Sum_probs=85.6
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029810 8 RSRGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 87 (187)
Q Consensus 8 r~~~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~ 87 (187)
+......+..+.++|||+|||.++++++|+++|++||+|..|.|+.+..++.++|||||+|.+.++|++||+.|++..|+
T Consensus 35 ~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 35 RHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CCCCCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 33445566778899999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CeEEEEEeccCCC
Q 029810 88 GRYITVERSRRKR 100 (187)
Q Consensus 88 g~~l~v~~a~~~~ 100 (187)
|+.|.|++++++.
T Consensus 115 g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 115 GRRIRVDFSITKR 127 (129)
T ss_dssp SSCCEESCCSSSS
T ss_pred CEEEEEEEecCCC
Confidence 9999999998764
No 27
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=7.2e-23 Score=136.32 Aligned_cols=86 Identities=23% Similarity=0.404 Sum_probs=80.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEE-EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASC-FLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~-~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
.+.++|||+|||.++++++|+++|++||.|..| .|+.+..++.+++||||+|.+.++|++||+.||+..|.|+.|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 029810 96 SRRKRPR 102 (187)
Q Consensus 96 a~~~~~~ 102 (187)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 28
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.1e-22 Score=137.78 Aligned_cols=87 Identities=26% Similarity=0.454 Sum_probs=81.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
...++++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|++..|.|+.|.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 029810 95 RSRRKRP 101 (187)
Q Consensus 95 ~a~~~~~ 101 (187)
+++++..
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9987643
No 29
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=2.5e-22 Score=135.49 Aligned_cols=90 Identities=22% Similarity=0.393 Sum_probs=82.4
Q ss_pred CCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 11 GRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 11 ~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
....+..+.++|||+|||.++++++|+++|++|| |..|.|+.+..++.++|||||+|.+.++|++|| .|++..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 3455667789999999999999999999999996 999999999999999999999999999999999 79999999999
Q ss_pred EEEEeccCCCCC
Q 029810 91 ITVERSRRKRPR 102 (187)
Q Consensus 91 l~v~~a~~~~~~ 102 (187)
|.|++++++...
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2dng_A 85 LRVDIAEGRKQD 96 (103)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEecCCCCC
Confidence 999999876543
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=4.9e-22 Score=134.01 Aligned_cols=94 Identities=30% Similarity=0.486 Sum_probs=83.5
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029810 9 SRGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 88 (187)
Q Consensus 9 ~~~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g 88 (187)
+....+...+.++|||+|||+++++++|+++|++||.|..|.|+.+.. .+++||||+|.+.++|++||+.|++..|+|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 5 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp CCCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344556677889999999999999999999999999999999998764 378999999999999999999999999999
Q ss_pred eEEEEEeccCCCCCCC
Q 029810 89 RYITVERSRRKRPRTP 104 (187)
Q Consensus 89 ~~l~v~~a~~~~~~~~ 104 (187)
+.|.|++++++.....
T Consensus 83 ~~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 83 RKIEVNNATARVMTNS 98 (103)
T ss_dssp EECEEEECCSSCCCCC
T ss_pred EEEEEEEcccCCCCCC
Confidence 9999999998765443
No 31
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.5e-22 Score=135.32 Aligned_cols=87 Identities=28% Similarity=0.450 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPR---TRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~---~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.+.++|||+|||+++++++|+++|++||.|..|.|+.+.. |+.+++||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998876 6688999999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 029810 94 ERSRRKRPRT 103 (187)
Q Consensus 94 ~~a~~~~~~~ 103 (187)
++++++....
T Consensus 83 ~~a~~~~~~~ 92 (98)
T 2cpf_A 83 RISERATKPA 92 (98)
T ss_dssp ECSSCSSCCC
T ss_pred EEccCCCCCC
Confidence 9998765543
No 32
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=138.64 Aligned_cols=83 Identities=24% Similarity=0.352 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC-CCccCCeEEEEEec
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN-QSVLEGRYITVERS 96 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~-g~~i~g~~l~v~~a 96 (187)
+++|||+|||.++|+++|+++|++|| +|..|.|+.++.|+.++|||||+|.+.++|++||+.|+ +..|.|+.|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 89999999999999999999999999999999999775 56799999999999
Q ss_pred cCCCC
Q 029810 97 RRKRP 101 (187)
Q Consensus 97 ~~~~~ 101 (187)
.+++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 33
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=1.9e-22 Score=130.66 Aligned_cols=82 Identities=22% Similarity=0.369 Sum_probs=78.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccC
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 98 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 98 (187)
+++|||+|||.++++++|+++|++||.|..+.|+.+..++.++|||||+|.+.++|++|++.||+..|.|+.|.|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q 029810 99 KR 100 (187)
Q Consensus 99 ~~ 100 (187)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 34
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=133.45 Aligned_cols=86 Identities=30% Similarity=0.439 Sum_probs=80.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
......+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..|.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34455678999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEecc
Q 029810 92 TVERSR 97 (187)
Q Consensus 92 ~v~~a~ 97 (187)
.|++++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999985
No 35
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.89 E-value=1.6e-22 Score=137.00 Aligned_cols=91 Identities=20% Similarity=0.260 Sum_probs=83.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc---CC
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL---EG 88 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i---~g 88 (187)
...+..+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.||+..| .+
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 344566789999999999999999999999999999999999998999999999999999999999999999987 88
Q ss_pred eEEEEEeccCCCCC
Q 029810 89 RYITVERSRRKRPR 102 (187)
Q Consensus 89 ~~l~v~~a~~~~~~ 102 (187)
+.|.|+++.++...
T Consensus 86 ~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 86 RPIQVKPADSESRG 99 (106)
T ss_dssp SCCEEEECCCCSCC
T ss_pred ceEEEEECCccccc
Confidence 99999999876543
No 36
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.6e-22 Score=137.60 Aligned_cols=90 Identities=23% Similarity=0.410 Sum_probs=83.1
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCcee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVA--------SCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
..+..+.++|||+|||.++++++|+++|++||.|. .|.|+.+..++.++|||||+|.+.++|++||+.||+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34566789999999999999999999999999999 6999999889999999999999999999999999999
Q ss_pred ccCCeEEEEEeccCCCCC
Q 029810 85 VLEGRYITVERSRRKRPR 102 (187)
Q Consensus 85 ~i~g~~l~v~~a~~~~~~ 102 (187)
.|.|+.|.|++++++...
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999999999876543
No 37
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=1.7e-22 Score=131.45 Aligned_cols=83 Identities=33% Similarity=0.479 Sum_probs=78.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
...+.++|||+|||+++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++|++.||+..|.|+.|.|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34577999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecc
Q 029810 95 RSR 97 (187)
Q Consensus 95 ~a~ 97 (187)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 975
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.88 E-value=3.5e-23 Score=136.49 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCC--ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEG--KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
.+|||+|||+++++++|+++|++|| .|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 029810 98 RKRPRT 103 (187)
Q Consensus 98 ~~~~~~ 103 (187)
+.....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 765543
No 39
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.2e-22 Score=135.25 Aligned_cols=87 Identities=20% Similarity=0.354 Sum_probs=80.4
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRT-RISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~-~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
..+..+.++|||+|||+++++++|+++|.+|| |..|.|+.+..+ +.++|||||+|.+.++|++|| .|++..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 44556779999999999999999999999999 999999999887 899999999999999999999 899999999999
Q ss_pred EEEeccCCCC
Q 029810 92 TVERSRRKRP 101 (187)
Q Consensus 92 ~v~~a~~~~~ 101 (187)
.|++++++..
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 40
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.8e-21 Score=133.53 Aligned_cols=89 Identities=27% Similarity=0.385 Sum_probs=81.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
...+..+.++|||+|||.++++++|+++|.+||.|..|.|+.+. ++.+++||||+|.+.++|++||+.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 34556778999999999999999999999999999999999887 58899999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 029810 92 TVERSRRKRP 101 (187)
Q Consensus 92 ~v~~a~~~~~ 101 (187)
.|++++....
T Consensus 87 ~v~~a~~~~~ 96 (114)
T 2do0_A 87 HVKMDERALP 96 (114)
T ss_dssp EEEECSCCCC
T ss_pred EEEEcccCCC
Confidence 9999875543
No 41
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=135.96 Aligned_cols=90 Identities=24% Similarity=0.404 Sum_probs=83.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
...+..+.++|||+|||+++++++|+++|.+||+|..|.|+.+..++.+++||||+|.+.++|++||+. ++..|+|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 344567789999999999999999999999999999999999988999999999999999999999998 9999999999
Q ss_pred EEEeccCCCCC
Q 029810 92 TVERSRRKRPR 102 (187)
Q Consensus 92 ~v~~a~~~~~~ 102 (187)
.|++++++...
T Consensus 88 ~V~~a~~~~~~ 98 (105)
T 2dh8_A 88 DPKPCTPRGMQ 98 (105)
T ss_dssp BCCCSCCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999877554
No 42
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=134.63 Aligned_cols=89 Identities=21% Similarity=0.349 Sum_probs=82.5
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhc-CCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCc-cCCeE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSK-EGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV-LEGRY 90 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~-i~g~~ 90 (187)
..+..+.++|||+|||+++++++|+++|.+ ||.|..|.|+.+. ++.+++||||+|.+.++|++||+.|++.. |+|+.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 445677899999999999999999999999 9999999999998 89999999999999999999999999999 99999
Q ss_pred EEEEeccCCCCC
Q 029810 91 ITVERSRRKRPR 102 (187)
Q Consensus 91 l~v~~a~~~~~~ 102 (187)
|.|+++.++...
T Consensus 82 l~v~~a~~~~~~ 93 (104)
T 2dhg_A 82 VRLSVAIPKASR 93 (104)
T ss_dssp CCCCBCCCCCSC
T ss_pred EEEEEccCCCcC
Confidence 999999876543
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=135.40 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCc--eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC----ccCC
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGK--VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS----VLEG 88 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~--i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~----~i~g 88 (187)
....-++|||+|||+++|+++|+++|++||. |..|.|+.++.|+.++|||||+|.+.++|++||+.||+. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3445589999999999999999999999995 678999999999999999999999999999999999997 4899
Q ss_pred eEEEEEeccC
Q 029810 89 RYITVERSRR 98 (187)
Q Consensus 89 ~~l~v~~a~~ 98 (187)
+.|.|++|+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999874
No 44
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.88 E-value=3.6e-22 Score=133.08 Aligned_cols=84 Identities=23% Similarity=0.412 Sum_probs=79.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
++++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|++..|+|+.|.|++++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 029810 98 RKRP 101 (187)
Q Consensus 98 ~~~~ 101 (187)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7643
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=132.07 Aligned_cols=89 Identities=26% Similarity=0.362 Sum_probs=80.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
...+..+.++|||+|||+++++++|+++|++||.|..|.|+.+..+ +++||||+|.+.++|++||+.|++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3455677899999999999999999999999999999999988543 58999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 029810 92 TVERSRRKRPR 102 (187)
Q Consensus 92 ~v~~a~~~~~~ 102 (187)
.|++++++...
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2cqi_A 86 KVNWATTPSSQ 96 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccc
Confidence 99999876543
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.88 E-value=5.2e-22 Score=133.03 Aligned_cols=85 Identities=24% Similarity=0.341 Sum_probs=80.5
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS--------CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
..+..+.++|||+|||.++++++|+++|++||.|.. |.|+.+..++.++|||||+|.+.++|++||+.||+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 456677899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccCCeEEEEEecc
Q 029810 85 VLEGRYITVERSR 97 (187)
Q Consensus 85 ~i~g~~l~v~~a~ 97 (187)
.|.|+.|.|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 47
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=133.89 Aligned_cols=86 Identities=20% Similarity=0.380 Sum_probs=80.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCcee-EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE--
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVA-SCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY-- 90 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~-- 90 (187)
....+.++|||+|||+++++++|+++|++||.|. .|.|+.+..++.+++||||+|.+.++|++||+.||+..|.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4456789999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred --EEEEeccCC
Q 029810 91 --ITVERSRRK 99 (187)
Q Consensus 91 --l~v~~a~~~ 99 (187)
|.|+++++.
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999998865
No 48
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=4.6e-22 Score=136.96 Aligned_cols=83 Identities=28% Similarity=0.518 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
..++|||+|||+++++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||+.|++..|+|+.|.|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999886 4478999999999999999999999999999999999998
Q ss_pred CCCCC
Q 029810 98 RKRPR 102 (187)
Q Consensus 98 ~~~~~ 102 (187)
++..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 76543
No 49
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.88 E-value=5.3e-22 Score=135.24 Aligned_cols=88 Identities=27% Similarity=0.394 Sum_probs=82.3
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
+....+.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|++..|.|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44566778999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 029810 93 VERSRRKR 100 (187)
Q Consensus 93 v~~a~~~~ 100 (187)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998653
No 50
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.6e-22 Score=132.22 Aligned_cols=86 Identities=21% Similarity=0.317 Sum_probs=78.5
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHH----HHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLE----KHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 88 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~----~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g 88 (187)
..+..+.++|||+|||+++++++|+ ++|++||+|..|.|+.+..+ ++||||+|.+.++|++||+.||+..|.|
T Consensus 3 s~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 3 SGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp CCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3455677899999999999999999 99999999999999988765 7899999999999999999999999999
Q ss_pred eEEEEEeccCCCC
Q 029810 89 RYITVERSRRKRP 101 (187)
Q Consensus 89 ~~l~v~~a~~~~~ 101 (187)
+.|.|+++++...
T Consensus 80 r~l~V~~a~~~~~ 92 (96)
T 2dgx_A 80 KKILVSLATGASG 92 (96)
T ss_dssp EEEEEEECCCSSC
T ss_pred eEEEEEEcCCCCC
Confidence 9999999987644
No 51
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-21 Score=133.24 Aligned_cols=86 Identities=28% Similarity=0.353 Sum_probs=77.4
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
..+..+.++|||+|||.++++++|+++|++||.|..|.|+.+ +.+++||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 445567799999999999999999999999999999998654 45689999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 029810 93 VERSRRKRP 101 (187)
Q Consensus 93 v~~a~~~~~ 101 (187)
|++++++..
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999987644
No 52
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.88 E-value=3.8e-22 Score=136.11 Aligned_cols=88 Identities=25% Similarity=0.412 Sum_probs=81.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
....+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||..|++..|.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 029810 94 ERSRRKRP 101 (187)
Q Consensus 94 ~~a~~~~~ 101 (187)
++++++..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987643
No 53
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=132.45 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=75.5
Q ss_pred CCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC--
Q 029810 11 GRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG-- 88 (187)
Q Consensus 11 ~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g-- 88 (187)
...++....++|||+|||+++++++|+++|.+||+|..|.|+.+ +||||+|++.++|++||+.||+..|.|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 79 (108)
T 1x4c_A 7 GGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 79 (108)
T ss_dssp SSCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCc
Confidence 34455677899999999999999999999999999999999865 699999999999999999999999999
Q ss_pred ---eEEEEEeccCCC
Q 029810 89 ---RYITVERSRRKR 100 (187)
Q Consensus 89 ---~~l~v~~a~~~~ 100 (187)
+.|.|++++++.
T Consensus 80 ~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 80 GETAYIRVKVDGPRS 94 (108)
T ss_dssp SCEEEEEEEESSCCS
T ss_pred CcceEEEEEeCCCCC
Confidence 999999998753
No 54
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.87 E-value=6.7e-22 Score=134.19 Aligned_cols=84 Identities=23% Similarity=0.307 Sum_probs=79.0
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
..+..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.+++||||+|.+.++|++||+.|++..|.|+.|.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4556778999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEecc
Q 029810 93 VERSR 97 (187)
Q Consensus 93 v~~a~ 97 (187)
|++++
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 55
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.9e-21 Score=130.23 Aligned_cols=90 Identities=26% Similarity=0.415 Sum_probs=81.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 11 GRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 11 ~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
....+..+.++|||+|||+++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||. +++.|+|+.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~ 84 (103)
T 2cqg_A 7 GVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRW 84 (103)
T ss_dssp SCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEE
T ss_pred CCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeE
Confidence 345566778999999999999999999999999999999999999899999999999999999999999 467899999
Q ss_pred EEEEeccCCCCC
Q 029810 91 ITVERSRRKRPR 102 (187)
Q Consensus 91 l~v~~a~~~~~~ 102 (187)
|.|+++.++...
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cqg_A 85 CDCKLPNSKQSQ 96 (103)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEEecCCCCcC
Confidence 999999876543
No 56
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.87 E-value=1.3e-22 Score=136.36 Aligned_cols=83 Identities=24% Similarity=0.357 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCC------CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC-e
Q 029810 17 NPGNTLYVTGLST------RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG-R 89 (187)
Q Consensus 17 ~~~~~l~V~~Lp~------~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g-~ 89 (187)
..+++|||+|||. ++++++|+++|++||.|..|.|+.+..|+.++|||||+|.+.++|++||+.||+..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4568999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEeccCC
Q 029810 90 YITVERSRRK 99 (187)
Q Consensus 90 ~l~v~~a~~~ 99 (187)
.|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998754
No 57
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=6.2e-22 Score=129.56 Aligned_cols=83 Identities=23% Similarity=0.355 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCC-cceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRI-SRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~-~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
..++|||+|||.++++++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|++|++.||+..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999998887665 7899999999999999999999999999999999999
Q ss_pred cCCC
Q 029810 97 RRKR 100 (187)
Q Consensus 97 ~~~~ 100 (187)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 58
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=6.2e-22 Score=136.69 Aligned_cols=85 Identities=26% Similarity=0.421 Sum_probs=79.3
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
..+..+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556779999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecc
Q 029810 93 VERSR 97 (187)
Q Consensus 93 v~~a~ 97 (187)
|++++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99974
No 59
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=5.2e-22 Score=132.65 Aligned_cols=86 Identities=12% Similarity=0.135 Sum_probs=79.7
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
......++|||+|||+++++++|+++|.+||.|..+.++.+..++.+++||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34556789999999999999999999999999998888888889999999999999999999999999999999999999
Q ss_pred EeccCC
Q 029810 94 ERSRRK 99 (187)
Q Consensus 94 ~~a~~~ 99 (187)
+++...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998743
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.87 E-value=1.5e-21 Score=128.90 Aligned_cols=85 Identities=26% Similarity=0.328 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
+..+.++|||+|||.++++++|+++|++||.|..|.|+.+ ++.+++||||+|.+.++|++||+.|++..|.|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999874 68889999999999999999999999999999999999
Q ss_pred eccCCCC
Q 029810 95 RSRRKRP 101 (187)
Q Consensus 95 ~a~~~~~ 101 (187)
++++...
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9986543
No 61
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.87 E-value=3.5e-21 Score=129.93 Aligned_cols=81 Identities=27% Similarity=0.390 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
....+.++|||+|||+++++++|+++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 345677999999999999999999999999999999886 459999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 029810 94 ERSRRKRPR 102 (187)
Q Consensus 94 ~~a~~~~~~ 102 (187)
++++++...
T Consensus 78 ~~a~~~~~~ 86 (103)
T 2dgu_A 78 VFAKPPDQK 86 (103)
T ss_dssp EECCCCCCC
T ss_pred EEcCCCccc
Confidence 999876554
No 62
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.87 E-value=8.3e-22 Score=130.88 Aligned_cols=85 Identities=25% Similarity=0.337 Sum_probs=78.1
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
..+..+.++|||+|||+.+++++|+++|++||+|..|.|+.+.. +.+++||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 44566779999999999999999999999999999999999875 88899999999999999999999999999999999
Q ss_pred EEeccC
Q 029810 93 VERSRR 98 (187)
Q Consensus 93 v~~a~~ 98 (187)
|++++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999863
No 63
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.87 E-value=1.8e-21 Score=127.27 Aligned_cols=83 Identities=28% Similarity=0.574 Sum_probs=76.5
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.++..+.++|||+|||+++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 3456778999999999999999999999999999999999999999999999999999999999997 688899999999
Q ss_pred EEec
Q 029810 93 VERS 96 (187)
Q Consensus 93 v~~a 96 (187)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 64
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.86 E-value=3.9e-22 Score=132.50 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=76.1
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
....+.++|||+|||+++++++|+++|++||.|..+.++.+..++.+++||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 34455689999999999999999999999999999989988889999999999999999999999999999999999999
Q ss_pred Eecc
Q 029810 94 ERSR 97 (187)
Q Consensus 94 ~~a~ 97 (187)
+++.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9976
No 65
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=2.9e-21 Score=134.55 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=83.5
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.....+.++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|++..|.|+.|.
T Consensus 29 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 29 GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3456777899999999999999999999999999999999988 889999999999999999999999999999999999
Q ss_pred EEeccCCCCCCC
Q 029810 93 VERSRRKRPRTP 104 (187)
Q Consensus 93 v~~a~~~~~~~~ 104 (187)
|++|.+.....+
T Consensus 108 V~~a~~~~~~~~ 119 (124)
T 2kt5_A 108 IQLVASQIDLEH 119 (124)
T ss_dssp EEEECCTTCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999987665544
No 66
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=131.56 Aligned_cols=84 Identities=14% Similarity=0.252 Sum_probs=74.3
Q ss_pred CCCCCCCCCeEEEcCCCC-CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC--ccCC
Q 029810 12 RTETGNPGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS--VLEG 88 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~--~i~g 88 (187)
.....++.++|||+|||+ .+++++|+++|++||.|..|.|+.+ ++||||+|++.++|++||+.|++. .|.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 8 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 344566889999999999 9999999999999999999999764 479999999999999999999864 5999
Q ss_pred eEEEEEeccCCCC
Q 029810 89 RYITVERSRRKRP 101 (187)
Q Consensus 89 ~~l~v~~a~~~~~ 101 (187)
+.|.|++++....
T Consensus 82 r~l~V~~a~~~~~ 94 (102)
T 1x4d_A 82 KPVRVHLSQKYKR 94 (102)
T ss_dssp EECEEEEECCCTT
T ss_pred cEEEEEECCCCCC
Confidence 9999999986543
No 67
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=129.64 Aligned_cols=87 Identities=28% Similarity=0.480 Sum_probs=78.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
......+.++|||+|||.++++++|+++|+.|+ .|.++.+..++.+++||||+|.+.++|++||+.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 8 PNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp TSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 345567789999999999999999999999874 67778888889999999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 029810 92 TVERSRRKRP 101 (187)
Q Consensus 92 ~v~~a~~~~~ 101 (187)
.|++++++..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9999987644
No 68
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-22 Score=138.98 Aligned_cols=83 Identities=29% Similarity=0.436 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
..++|||+|||.++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|| .||+..|.|+.|.|++++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3479999999999999999999999999999999999999999999999999999999999 899999999999999998
Q ss_pred CCCC
Q 029810 98 RKRP 101 (187)
Q Consensus 98 ~~~~ 101 (187)
++..
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 6543
No 69
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.1e-21 Score=126.61 Aligned_cols=84 Identities=24% Similarity=0.397 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.+....++|||+|||+++++++|+++|++| .|..|.|+.+ .++.++|||||+|.+.++|++||+ ||+..|.|+.|.|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 445677999999999999999999999999 9999999998 789999999999999999999999 9999999999999
Q ss_pred EeccCCC
Q 029810 94 ERSRRKR 100 (187)
Q Consensus 94 ~~a~~~~ 100 (187)
.+++++.
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9998764
No 70
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.3e-22 Score=136.31 Aligned_cols=85 Identities=25% Similarity=0.525 Sum_probs=79.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
.+.++|||+|||+++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+. ++..|+|+.|.|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4458999999999999999999999999999999999998999999999999999999999996 999999999999999
Q ss_pred cCCCCC
Q 029810 97 RRKRPR 102 (187)
Q Consensus 97 ~~~~~~ 102 (187)
+++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 877543
No 71
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=129.28 Aligned_cols=87 Identities=26% Similarity=0.404 Sum_probs=76.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 11 GRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 11 ~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
...+...+.++|||+|||.++++++|+++|.+||.| .|+.+ .++.+++||||+|.+.++|++||+.||+..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 7 GNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp CCCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 344566778999999999999999999999999987 45555 57888999999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 029810 91 ITVERSRRKRP 101 (187)
Q Consensus 91 l~v~~a~~~~~ 101 (187)
|.|++++++..
T Consensus 83 l~v~~a~~~~~ 93 (101)
T 2fc9_A 83 IRLELQGPRGS 93 (101)
T ss_dssp EEEEECSSCCC
T ss_pred EEEEEcCCCCC
Confidence 99999987643
No 72
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.6e-21 Score=128.55 Aligned_cols=87 Identities=23% Similarity=0.309 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC--CCccC
Q 029810 10 RGRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN--QSVLE 87 (187)
Q Consensus 10 ~~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~--g~~i~ 87 (187)
+.......+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||+.|+ +..|.
T Consensus 6 ~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 6 SGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 444566678899999999999999999999999999999988754 6899999999999999999875 67899
Q ss_pred CeEEEEEeccCCCCC
Q 029810 88 GRYITVERSRRKRPR 102 (187)
Q Consensus 88 g~~l~v~~a~~~~~~ 102 (187)
|+.|.|++++.+...
T Consensus 80 Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 80 NQPIYIQYSNHKELK 94 (101)
T ss_dssp TEECEEEECSCSSCC
T ss_pred CcEEEEEEcCcccCc
Confidence 999999999876554
No 73
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=2.1e-21 Score=141.75 Aligned_cols=86 Identities=26% Similarity=0.416 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 029810 96 SRRKRP 101 (187)
Q Consensus 96 a~~~~~ 101 (187)
+.++..
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 987654
No 74
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=126.37 Aligned_cols=80 Identities=28% Similarity=0.475 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
+..+.++|||+|||.++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45677999999999999999999999999999999987 5699999999999999999999999999999999
Q ss_pred eccCCCCC
Q 029810 95 RSRRKRPR 102 (187)
Q Consensus 95 ~a~~~~~~ 102 (187)
+++++...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99876554
No 75
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=2.2e-21 Score=127.25 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
..++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++|+ .|++..|.|+.|.|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999889999999999999999999999 899999999999999997
Q ss_pred CC
Q 029810 98 RK 99 (187)
Q Consensus 98 ~~ 99 (187)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 76
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.9e-22 Score=133.75 Aligned_cols=86 Identities=24% Similarity=0.395 Sum_probs=80.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
..+.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|++..|.|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 029810 96 SRRKRP 101 (187)
Q Consensus 96 a~~~~~ 101 (187)
+.++..
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987643
No 77
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5e-21 Score=126.49 Aligned_cols=82 Identities=28% Similarity=0.495 Sum_probs=74.7
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.....+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 3456678999999999999999999999999999999987 34999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 029810 93 VERSRRKRPR 102 (187)
Q Consensus 93 v~~a~~~~~~ 102 (187)
|++++++...
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999876554
No 78
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=141.46 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCC--ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEG--KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
..++|||+|||+++++++|+++|++|| .|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 029810 96 SRRK 99 (187)
Q Consensus 96 a~~~ 99 (187)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8753
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=131.94 Aligned_cols=83 Identities=25% Similarity=0.369 Sum_probs=74.5
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--CccCCeEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ--SVLEGRYI 91 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g--~~i~g~~l 91 (187)
....+.++|||+|||+++++++|+++|++||+|..|.|+.+ +|||||+|++.++|++||+.|++ ..|.|+.|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 35667899999999999999999999999999999999864 68999999999999999998864 68999999
Q ss_pred EEEeccCCCCC
Q 029810 92 TVERSRRKRPR 102 (187)
Q Consensus 92 ~v~~a~~~~~~ 102 (187)
.|++++++...
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999876554
No 80
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.2e-21 Score=131.91 Aligned_cols=87 Identities=26% Similarity=0.328 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHH---HHhhcCCceeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLE---KHFSKEGKVASCFLVVEPRTR---ISRGFAFVTMDGVEDAERCIKYLNQSVLE 87 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~---~~f~~~G~i~~~~i~~~~~~~---~~~g~afV~f~~~~~a~~ai~~l~g~~i~ 87 (187)
......++|||+|||+++++++|+ ++|++||+|..|.|+.+..++ .++|||||+|++.++|++||+.||+..|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 345567899999999999999999 999999999999998887644 45599999999999999999999999999
Q ss_pred CeEEEEEeccCCC
Q 029810 88 GRYITVERSRRKR 100 (187)
Q Consensus 88 g~~l~v~~a~~~~ 100 (187)
|+.|.|++++++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998765
No 81
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.4e-22 Score=135.99 Aligned_cols=92 Identities=30% Similarity=0.411 Sum_probs=77.3
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
..+..+.++|||+|||.++++++|+++|.+||.|..+.+..+..++.++|||||+|.+.++|++||+.|++..|.|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34456789999999999999999999999999984332222222678899999999999999999999999999999999
Q ss_pred EEeccCCCCCCC
Q 029810 93 VERSRRKRPRTP 104 (187)
Q Consensus 93 v~~a~~~~~~~~ 104 (187)
|++++++....+
T Consensus 99 v~~a~~~~~~~~ 110 (115)
T 2cpx_A 99 IEFGKNKKQRSS 110 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEccCCCCCCC
Confidence 999997765443
No 82
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.1e-21 Score=127.28 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=75.2
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC--CeE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE--GRY 90 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~--g~~ 90 (187)
.....+.++|||+|||.++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.||+..|. |+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 445567799999999999999999999999999999998753 679999999999999999999999999 999
Q ss_pred EEEEeccCCCC
Q 029810 91 ITVERSRRKRP 101 (187)
Q Consensus 91 l~v~~a~~~~~ 101 (187)
|.|++++++..
T Consensus 85 l~V~~a~~~~~ 95 (97)
T 1why_A 85 LRVDFAKSGPS 95 (97)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987643
No 83
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=129.76 Aligned_cols=89 Identities=25% Similarity=0.310 Sum_probs=79.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 11 GRTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS-CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 11 ~~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~-~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
...++....++|||+|||+++++++|+++|.+||.|.. |.|+.+ .++.++|||||+|.+.++|++||+. ++..|.++
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 7 GNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp CCCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 34455677899999999999999999999999999987 888877 7899999999999999999999996 99999999
Q ss_pred EEEEEeccCCCC
Q 029810 90 YITVERSRRKRP 101 (187)
Q Consensus 90 ~l~v~~a~~~~~ 101 (187)
.|.|.++..+..
T Consensus 85 ~i~v~~~~~~~~ 96 (104)
T 1wg5_A 85 YIEIFKSSRAEV 96 (104)
T ss_dssp CCEEEEECTTTS
T ss_pred EEEEEECCHHHH
Confidence 999999876543
No 84
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=8.1e-22 Score=138.74 Aligned_cols=89 Identities=19% Similarity=0.396 Sum_probs=81.7
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeE--EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC----cc
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS--CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS----VL 86 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~--~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~----~i 86 (187)
.....+.++|||+|||+++++++|+++|.+||.|.. |.|+.+..++.++|||||+|.+. +|++||..||+. .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344567889999999999999999999999999976 99999999999999999999999 999999999999 99
Q ss_pred CCeEEEEEeccCCCCC
Q 029810 87 EGRYITVERSRRKRPR 102 (187)
Q Consensus 87 ~g~~l~v~~a~~~~~~ 102 (187)
+|+.|.|+++++....
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999876443
No 85
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=128.51 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=73.0
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCc--cCCeEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV--LEGRYI 91 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~--i~g~~l 91 (187)
...+++.+|||+|||..+++++|.++|++||.|..|.|+.. +|||||+|++.++|++||+.|++.. |.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 45568899999999999999999999999999999998743 6899999999999999999999875 789999
Q ss_pred EEEeccCCC
Q 029810 92 TVERSRRKR 100 (187)
Q Consensus 92 ~v~~a~~~~ 100 (187)
.|++++.+.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998764
No 86
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.86 E-value=2.6e-21 Score=132.01 Aligned_cols=88 Identities=26% Similarity=0.506 Sum_probs=76.6
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.++..+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.+ +..|+|+.|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 345667899999999999999999999999999999999999989999999999999999999999966 5899999999
Q ss_pred EEeccCCCC
Q 029810 93 VERSRRKRP 101 (187)
Q Consensus 93 v~~a~~~~~ 101 (187)
|+++.++..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987654
No 87
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=4.6e-21 Score=138.76 Aligned_cols=89 Identities=31% Similarity=0.488 Sum_probs=82.6
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
......++|||+|||+++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456799999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 029810 94 ERSRRKRPR 102 (187)
Q Consensus 94 ~~a~~~~~~ 102 (187)
.+++++...
T Consensus 145 ~~a~~~~~~ 153 (158)
T 2kn4_A 145 QMARYGRPP 153 (158)
T ss_dssp EEECCSSCC
T ss_pred EECCCCCCC
Confidence 999876543
No 88
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.1e-22 Score=129.32 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45779999999999999999999999999999999999988999999999999999999999999999999999888776
Q ss_pred cc
Q 029810 96 SR 97 (187)
Q Consensus 96 a~ 97 (187)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 89
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=6.1e-21 Score=129.06 Aligned_cols=84 Identities=20% Similarity=0.334 Sum_probs=74.3
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC--ccCCeE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS--VLEGRY 90 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~--~i~g~~ 90 (187)
.....+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|++.++|++||+.|++. .|.|+.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 345567899999999999999999999999999999988753 689999999999999999988754 599999
Q ss_pred EEEEeccCCCCC
Q 029810 91 ITVERSRRKRPR 102 (187)
Q Consensus 91 l~v~~a~~~~~~ 102 (187)
|.|++++.+...
T Consensus 83 l~V~~a~~~~~~ 94 (104)
T 1wex_A 83 AFFNYSTSKRIT 94 (104)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCcccc
Confidence 999999876554
No 90
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.85 E-value=9.6e-22 Score=150.80 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCC--ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEG--KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
..++|||+||++++++++|+++|++|| .|+.|.|+.+..+++++|||||+|.+.++|++||+.||+..|.|+.|.|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 029810 96 SRRK 99 (187)
Q Consensus 96 a~~~ 99 (187)
++++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8753
No 91
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=9.4e-22 Score=139.18 Aligned_cols=90 Identities=31% Similarity=0.488 Sum_probs=82.9
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
..+..+.++|||+|||+++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|++..|.|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 029810 93 VERSRRKRPR 102 (187)
Q Consensus 93 v~~a~~~~~~ 102 (187)
|++++++...
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 92
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.4e-21 Score=128.94 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=76.3
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.......++|||+|||+++++++|+++|++||.| .|.|+.+. +++++|||||+|++.++|++||+ +|+..|.++.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVE 85 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 3455677899999999999999999999999954 99999987 89999999999999999999996 899999999999
Q ss_pred EEeccCC
Q 029810 93 VERSRRK 99 (187)
Q Consensus 93 v~~a~~~ 99 (187)
|.++...
T Consensus 86 V~~~~~~ 92 (102)
T 1wez_A 86 LFLNSTA 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9998754
No 93
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.8e-21 Score=125.07 Aligned_cols=80 Identities=29% Similarity=0.495 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
....+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|+|+.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 455678999999999999999999999999999999987 349999999999999999999999999999999
Q ss_pred EeccCCCC
Q 029810 94 ERSRRKRP 101 (187)
Q Consensus 94 ~~a~~~~~ 101 (187)
++++++..
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987644
No 94
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.2e-21 Score=131.10 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
...+..+|||+|||+++|+++|+++|++||+|..|.|+.+.. +.++|||||+|.+.++|++||. +++..|+|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 345668999999999999999999999999999999999887 8999999999999999999999 99999999999999
Q ss_pred eccC
Q 029810 95 RSRR 98 (187)
Q Consensus 95 ~a~~ 98 (187)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8764
No 95
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.85 E-value=8.4e-21 Score=134.50 Aligned_cols=85 Identities=32% Similarity=0.457 Sum_probs=79.1
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
......+.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456678999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEec
Q 029810 92 TVERS 96 (187)
Q Consensus 92 ~v~~a 96 (187)
.|++|
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99985
No 96
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4e-21 Score=130.76 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCc-eeEEEEe-ecCCCCCcceEEEEEecCHHHHHHHHHHhC--CCccCCeEEE
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGK-VASCFLV-VEPRTRISRGFAFVTMDGVEDAERCIKYLN--QSVLEGRYIT 92 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~-i~~~~i~-~~~~~~~~~g~afV~f~~~~~a~~ai~~l~--g~~i~g~~l~ 92 (187)
.+.++|||+|||+++++++|+++|.+||. |..|.|+ .+..++.++|||||+|.+.++|++||+.|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred EEeccCCCCC
Q 029810 93 VERSRRKRPR 102 (187)
Q Consensus 93 v~~a~~~~~~ 102 (187)
|++++++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999877553
No 97
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-20 Score=128.55 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc-------
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL------- 86 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i------- 86 (187)
....+.++|||+|||.++++++|+++|.+||.|..|.|+.+. ++.+++||||+|.+.++|++||+.||+..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 445677999999999999999999999999999999999988 899999999999999999999999999999
Q ss_pred -CCeEEEEEeccCC
Q 029810 87 -EGRYITVERSRRK 99 (187)
Q Consensus 87 -~g~~l~v~~a~~~ 99 (187)
.++.|.|.++.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999998753
No 98
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.85 E-value=7.6e-21 Score=132.31 Aligned_cols=82 Identities=22% Similarity=0.434 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|| .|++..|.|+.|.|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999889999999999999999999999 699999999999999998
Q ss_pred CCC
Q 029810 98 RKR 100 (187)
Q Consensus 98 ~~~ 100 (187)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 99
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.7e-21 Score=130.70 Aligned_cols=84 Identities=26% Similarity=0.375 Sum_probs=75.2
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--CccCCeEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ--SVLEGRYI 91 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g--~~i~g~~l 91 (187)
....++++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|++.++|++||+.|++ ..|.|+.|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34567899999999999999999999999999999999865 68999999999999999998874 68999999
Q ss_pred EEEeccCCCCCC
Q 029810 92 TVERSRRKRPRT 103 (187)
Q Consensus 92 ~v~~a~~~~~~~ 103 (187)
.|++++.+....
T Consensus 100 ~V~~a~~k~~~~ 111 (119)
T 2ad9_A 100 YIQFSNHKELKT 111 (119)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCCCCCc
Confidence 999998776543
No 100
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-21 Score=135.92 Aligned_cols=85 Identities=18% Similarity=0.290 Sum_probs=77.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.+..+.++|||+|||+++++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|++||+ ||+..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345667999999999999999999999999999987777777789999999999999999999999 9999999999999
Q ss_pred EeccCC
Q 029810 94 ERSRRK 99 (187)
Q Consensus 94 ~~a~~~ 99 (187)
.++..+
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998754
No 101
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.5e-21 Score=129.98 Aligned_cols=86 Identities=31% Similarity=0.511 Sum_probs=78.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
......+.++|||+|||.++++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++|++.|++..|+|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556678999999999999999999999999999999998875 3478999999999999999999999999999999
Q ss_pred EEEeccCC
Q 029810 92 TVERSRRK 99 (187)
Q Consensus 92 ~v~~a~~~ 99 (187)
.|++++++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999865
No 102
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=2.4e-21 Score=123.22 Aligned_cols=75 Identities=25% Similarity=0.500 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
+|||+|||+++++++|+++|++||+|..|.|+.+..++.++|||||+|.+.++|++|++ |++..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999998 9999999999999875
No 103
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=125.51 Aligned_cols=84 Identities=25% Similarity=0.391 Sum_probs=75.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
......+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.|++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 3345567789999999999999999999999999999998744 6799999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 029810 92 TVERSRRKRP 101 (187)
Q Consensus 92 ~v~~a~~~~~ 101 (187)
.|++++++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpj_A 82 RVRFACHSAS 91 (99)
T ss_dssp EEEESSCCSC
T ss_pred EEEEcCCCCC
Confidence 9999987644
No 104
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.4e-20 Score=124.07 Aligned_cols=81 Identities=32% Similarity=0.427 Sum_probs=73.4
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcC--CceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKE--GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~--G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
.....+.++|||+|||+++++++|+++|++| |.|..|.+. ++||||+|.+.++|++||+.||+..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445677999999999999999999999999 899998875 569999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 029810 91 ITVERSRRKRP 101 (187)
Q Consensus 91 l~v~~a~~~~~ 101 (187)
|.|++++++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987643
No 105
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3e-21 Score=132.63 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=79.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCce-eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKV-ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
......+.++|||+|||+++++++|+++|+.||.| ..|.|+.+. ++.++|||||+|.+.++|++||+. |+..|.|+.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~ 85 (114)
T 2cpy_A 8 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGRE 85 (114)
T ss_dssp CCSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEE
T ss_pred CCCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeE
Confidence 34456678999999999999999999999999999 889999888 899999999999999999999996 999999999
Q ss_pred EEEEeccCCC
Q 029810 91 ITVERSRRKR 100 (187)
Q Consensus 91 l~v~~a~~~~ 100 (187)
|.|.++.++.
T Consensus 86 i~v~~a~~~~ 95 (114)
T 2cpy_A 86 AFVHVVTLED 95 (114)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999998654
No 106
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=125.28 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=73.7
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
..+....++|||+|||+++++++|+++|++||.|. +.++.+ .+++||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 13 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 13 GEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp CSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34456689999999999999999999999999997 666644 4578999999999999999999999999999999
Q ss_pred EEeccCCC
Q 029810 93 VERSRRKR 100 (187)
Q Consensus 93 v~~a~~~~ 100 (187)
|++++++.
T Consensus 88 V~~a~~~~ 95 (97)
T 2e5j_A 88 VALARQQR 95 (97)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99998764
No 107
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=130.36 Aligned_cols=84 Identities=21% Similarity=0.372 Sum_probs=74.7
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecC-CCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEP-RTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~-~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
......++|||+|||.++++++|+++|++|| |..|.|+.+. .++.++|||||+|.+.++|++|| .|++..|+|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 4456789999999999999999999999999 9999999888 68999999999999999999999 7999999999999
Q ss_pred EEeccCC
Q 029810 93 VERSRRK 99 (187)
Q Consensus 93 v~~a~~~ 99 (187)
|++++++
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999865
No 108
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=127.54 Aligned_cols=82 Identities=21% Similarity=0.388 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
.....++|||+|||..+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.|++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999865 6799999999999999999999999999999999
Q ss_pred eccCCCCC
Q 029810 95 RSRRKRPR 102 (187)
Q Consensus 95 ~a~~~~~~ 102 (187)
+++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99876544
No 109
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.84 E-value=2e-20 Score=127.56 Aligned_cols=81 Identities=27% Similarity=0.498 Sum_probs=73.2
Q ss_pred CCCCCCCCeEEEcCCCCC-CcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 13 TETGNPGNTLYVTGLSTR-VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
.++....++|||+|||++ +++++|+++|++||.|..|.| +++||||+|++.++|++||+.|++..|+|+.|
T Consensus 21 ~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 21 NDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 445556789999999999 999999999999999999988 36899999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 029810 92 TVERSRRKRP 101 (187)
Q Consensus 92 ~v~~a~~~~~ 101 (187)
.|++++....
T Consensus 93 ~V~~a~~~~~ 102 (110)
T 1wf1_A 93 DINMAGEPKP 102 (110)
T ss_dssp CEEESCCCCS
T ss_pred EEEECCCCCC
Confidence 9999985433
No 110
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.84 E-value=1.8e-21 Score=133.99 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=65.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE----
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY---- 90 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~---- 90 (187)
+....++|||+|||+++++++|+++|++||+|..|.|+.+ +||||+|++.++|++||+.||+..|+|+.
T Consensus 12 ~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 12 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp -----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 3456799999999999999999999999999999999754 79999999999999999999999999988
Q ss_pred -EEEEeccC
Q 029810 91 -ITVERSRR 98 (187)
Q Consensus 91 -l~v~~a~~ 98 (187)
|.|+.+.+
T Consensus 85 ~i~v~~~~~ 93 (115)
T 3beg_B 85 YIRVKVDGP 93 (115)
T ss_dssp BCEEEECC-
T ss_pred EEEeccCCC
Confidence 66666543
No 111
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.84 E-value=1.1e-20 Score=130.61 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=78.3
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCc---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGK---VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~---i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
.++....++|||+|||+++++++|+++|+.||. |..|.|+.+.. ++++|||||+|.+.++|++||+ ||+..|+|+
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 345567899999999999999999999999998 89999999876 8999999999999999999999 999999999
Q ss_pred EEEEEeccCC
Q 029810 90 YITVERSRRK 99 (187)
Q Consensus 90 ~l~v~~a~~~ 99 (187)
.|.|.++..+
T Consensus 89 ~i~V~~a~~~ 98 (118)
T 2db1_A 89 YIEVFKSHRT 98 (118)
T ss_dssp EEEEEEECHH
T ss_pred EEEEEECCHH
Confidence 9999998754
No 112
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=121.90 Aligned_cols=80 Identities=29% Similarity=0.449 Sum_probs=73.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh-CCCccCCeE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL-NQSVLEGRY 90 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l-~g~~i~g~~ 90 (187)
..++..+.++|||+|||.++++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|++.| ++..|.|+.
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3445567899999999999999999999999999999999864 689999999999999999998 999999999
Q ss_pred EEEEecc
Q 029810 91 ITVERSR 97 (187)
Q Consensus 91 l~v~~a~ 97 (187)
|.|++++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999975
No 113
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-22 Score=139.45 Aligned_cols=87 Identities=24% Similarity=0.357 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVAS--------CFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 86 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i 86 (187)
+..+.++|||+|||.++++++|+++|++||.|.. |.|+.+..++.++|||||+|.+.++|++||+.||+..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567799999999999999999999999999998 88998888899999999999999999999999999999
Q ss_pred CCeEEEEEeccCCCC
Q 029810 87 EGRYITVERSRRKRP 101 (187)
Q Consensus 87 ~g~~l~v~~a~~~~~ 101 (187)
.|+.|.|++++++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999987643
No 114
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=127.79 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCC------cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029810 15 TGNPGNTLYVTGLSTRV------TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 88 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~------t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g 88 (187)
+....++|||+|||+.+ ++++|+++|++||.|..|.|+ ..++.++|||||+|.+.++|++||..|||..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 889999999999999999887 4678899999999999999999999999999999
Q ss_pred e-EEEEEeccCC
Q 029810 89 R-YITVERSRRK 99 (187)
Q Consensus 89 ~-~l~v~~a~~~ 99 (187)
+ .|.|+++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998754
No 115
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.8e-21 Score=122.77 Aligned_cols=76 Identities=26% Similarity=0.496 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
++|||+|||.++++++|+++|++||+|..+.|+.+..++.++|||||+|.+.++|++|++.++ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998889999999999999999999999999 9999999999986
No 116
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=1.4e-21 Score=128.61 Aligned_cols=82 Identities=28% Similarity=0.440 Sum_probs=73.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccCC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 99 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 99 (187)
++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.+ |++|+..||+..|.|+.|.|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999999876
Q ss_pred CCC
Q 029810 100 RPR 102 (187)
Q Consensus 100 ~~~ 102 (187)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 117
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.2e-20 Score=125.65 Aligned_cols=79 Identities=22% Similarity=0.348 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCC-CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 15 TGNPGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
...+.++|||+|||+ ++++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.|++..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456789999999998 99999999999999999999985 679999999999999999999999999999999
Q ss_pred EeccCCCC
Q 029810 94 ERSRRKRP 101 (187)
Q Consensus 94 ~~a~~~~~ 101 (187)
++++++..
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99987644
No 118
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-21 Score=130.66 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
...+.++|||+|||.++++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ |++..|.|+.|.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999999887 566666678889999999999999999999 99999999999999
Q ss_pred eccCCCC
Q 029810 95 RSRRKRP 101 (187)
Q Consensus 95 ~a~~~~~ 101 (187)
+++++..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9987643
No 119
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=9.7e-21 Score=129.44 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.....++|||+|||+++++++|+++|++|| +|..+.|+.. .++|||||+|++.++|++||+.||+..|+|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 8999988532 35899999999999999999999999999999999
Q ss_pred EeccCC
Q 029810 94 ERSRRK 99 (187)
Q Consensus 94 ~~a~~~ 99 (187)
++++..
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998754
No 120
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=130.20 Aligned_cols=84 Identities=14% Similarity=0.282 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHH----HHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLE----KHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~----~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
.+..++++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|++||..|||..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 445678999999999999999876 6999999999987753 567899999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 029810 90 YITVERSRRKR 100 (187)
Q Consensus 90 ~l~v~~a~~~~ 100 (187)
.|.|++++.+.
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999998654
No 121
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.83 E-value=1.3e-20 Score=133.32 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=78.0
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCc---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGK---VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~---i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
++....++|||+|||+++|+++|+++|++||. |..|.|+.+.. ++++|||||+|++.++|++||+ ||+..|+|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 45567899999999999999999999999999 88999999887 9999999999999999999999 9999999999
Q ss_pred EEEEeccCC
Q 029810 91 ITVERSRRK 99 (187)
Q Consensus 91 l~v~~a~~~ 99 (187)
|.|.++.++
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998654
No 122
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-19 Score=120.67 Aligned_cols=84 Identities=29% Similarity=0.363 Sum_probs=74.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 12 RTETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 12 ~~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
......+.++|||+|| ++++++|+++|.+||+|..|.|. .+++||||+|.+.++|++||+.|++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 8 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred ccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3445667899999996 89999999999999999999884 347899999999999999999999999999999
Q ss_pred EEEeccCCCCCC
Q 029810 92 TVERSRRKRPRT 103 (187)
Q Consensus 92 ~v~~a~~~~~~~ 103 (187)
.|++++++....
T Consensus 80 ~v~~a~~~~~~~ 91 (97)
T 1x5p_A 80 KVNIARKQPMLD 91 (97)
T ss_dssp EEECCSSCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999998775543
No 123
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=2.7e-20 Score=126.70 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=72.8
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.....+.++|||+|||.++++++|+++|++||.|..|.|+ +|||||+|.+.++|++|++.|++..|+|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4556778999999999999999999999999999999987 57999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 029810 93 VERSRRKRP 101 (187)
Q Consensus 93 v~~a~~~~~ 101 (187)
|++++++..
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999987643
No 124
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2e-20 Score=123.83 Aligned_cols=81 Identities=32% Similarity=0.418 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCc-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC-CccCCeEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGK-VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ-SVLEGRYIT 92 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g-~~i~g~~l~ 92 (187)
...+.++|||+|||.++++++|+++|++||. |..+.+. +++||||+|.+.++|++||+.||+ ..|+|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4456789999999999999999999999999 5555553 367999999999999999999999 999999999
Q ss_pred EEeccCCCCC
Q 029810 93 VERSRRKRPR 102 (187)
Q Consensus 93 v~~a~~~~~~ 102 (187)
|++++++..+
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 125
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=125.21 Aligned_cols=76 Identities=30% Similarity=0.470 Sum_probs=71.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccCC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 99 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 99 (187)
++|||+|||+++++++|+++|++||+|..|.|+.+ +++||||+|.+.++|++||+.|++..|.|+.|.|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 4789999999999999999999999999999999999876
Q ss_pred C
Q 029810 100 R 100 (187)
Q Consensus 100 ~ 100 (187)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 126
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.83 E-value=2e-20 Score=138.16 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
...++++|||+|||+.+++++|+++|++||+|..|.|+.+. ++.++|||||+|.+.++|++||+.|++..|+|+.|.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999888 88999999999999999999999999999999999999
Q ss_pred eccCCC
Q 029810 95 RSRRKR 100 (187)
Q Consensus 95 ~a~~~~ 100 (187)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 998654
No 127
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=128.23 Aligned_cols=82 Identities=20% Similarity=0.281 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCC-CcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--CccCCeEE
Q 029810 15 TGNPGNTLYVTGLSTR-VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ--SVLEGRYI 91 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g--~~i~g~~l 91 (187)
...++++|||+|||++ +++++|+++|++||.|..|.|+. .++||||+|++.++|++||+.|++ ..|.|+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3567899999999998 99999999999999999999873 268999999999999999998864 56999999
Q ss_pred EEEeccCCCCC
Q 029810 92 TVERSRRKRPR 102 (187)
Q Consensus 92 ~v~~a~~~~~~ 102 (187)
.|++++.+...
T Consensus 95 ~V~~a~~~~~~ 105 (112)
T 1x4f_A 95 KVDLSEKYKKL 105 (112)
T ss_dssp EEEEECSCSSS
T ss_pred EEEECcccccc
Confidence 99999876544
No 128
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=3.3e-20 Score=120.33 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
...-|||+||++.+|+++|+++|.+||+|..+.+.. ++|||||+|.+.++|++|++.||+..|.|++|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 48999999999999999999999999999999999984
No 129
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.5e-20 Score=125.15 Aligned_cols=79 Identities=23% Similarity=0.308 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
.....++|||+|||.++++++|+++|++||.|..|.|.. +++||||+|.+.++|++||..||+..|+|+.|.|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344578999999999999999999999999999999872 37899999999999999999999999999999999
Q ss_pred eccCC
Q 029810 95 RSRRK 99 (187)
Q Consensus 95 ~a~~~ 99 (187)
+++++
T Consensus 97 ~a~~~ 101 (101)
T 2la4_A 97 WGKER 101 (101)
T ss_dssp BCCCC
T ss_pred eccCC
Confidence 98753
No 130
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.9e-20 Score=121.21 Aligned_cols=81 Identities=26% Similarity=0.376 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
....++|||+|||+++++++|+++|.+||.|..| +.+..++. ||||+|.+.++|++||+ |++..|+|+.|.|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 55655554 99999999999999999 999999999999998
Q ss_pred ccCCCCC
Q 029810 96 SRRKRPR 102 (187)
Q Consensus 96 a~~~~~~ 102 (187)
+..+...
T Consensus 79 a~~~~~~ 85 (94)
T 2e5g_A 79 REQKEFQ 85 (94)
T ss_dssp SCCSCCC
T ss_pred CCcCCCC
Confidence 8765443
No 131
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=2.7e-20 Score=123.80 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=74.1
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.....+.++|||+|||..+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|++||+.|++..|.|+.|.
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3445677999999999999999999999999988766 23577899999999999999999999999999999999
Q ss_pred EEeccCCC
Q 029810 93 VERSRRKR 100 (187)
Q Consensus 93 v~~a~~~~ 100 (187)
|+++.++.
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99998654
No 132
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=9.5e-20 Score=121.66 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=71.6
Q ss_pred CCCCCCCCeEEEcCCCC-CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 13 TETGNPGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
.....+.++|||+|||. ++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|++..|.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34566789999999998 99999999999999999999884 6799999999999999999999999999999
Q ss_pred EEEeccCC
Q 029810 92 TVERSRRK 99 (187)
Q Consensus 92 ~v~~a~~~ 99 (187)
.|++++++
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998764
No 133
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=1.8e-20 Score=124.83 Aligned_cols=83 Identities=18% Similarity=0.384 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLE----KHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~----~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
+..+.++|||+|||.++++++|+ ++|++||.|..|.|+. ++.++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45678999999999999999999 9999999999998873 4567899999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 029810 91 ITVERSRRKR 100 (187)
Q Consensus 91 l~v~~a~~~~ 100 (187)
|.|++++++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998754
No 134
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=6.6e-20 Score=125.90 Aligned_cols=83 Identities=22% Similarity=0.333 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
+..++++|||+|||.++++++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4567799999999999999999999999999999999865 3448999999999999999999999999999999999
Q ss_pred eccCCC
Q 029810 95 RSRRKR 100 (187)
Q Consensus 95 ~a~~~~ 100 (187)
++.++.
T Consensus 81 ~a~~~~ 86 (115)
T 3lqv_A 81 YYNANR 86 (115)
T ss_dssp ECCHHH
T ss_pred EecCCh
Confidence 998643
No 135
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=121.21 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=67.6
Q ss_pred CCeEEEcCCCCCC------cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe-EE
Q 029810 19 GNTLYVTGLSTRV------TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR-YI 91 (187)
Q Consensus 19 ~~~l~V~~Lp~~~------t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~-~l 91 (187)
+++|||+|||..+ ++++|+++|++||.|..|.|+ ..++.++|||||+|.+.++|++||+.|||..|.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999887 46788999999999999999999999999999999 88
Q ss_pred EE
Q 029810 92 TV 93 (187)
Q Consensus 92 ~v 93 (187)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 136
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4e-20 Score=126.05 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
.....+|||+|||+++++++|+++|+.| .|..|.|+.+.. ++++|||||+|.+.++|++|| .||+..|+|+.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3445799999999999999999999999 899999998875 889999999999999999999 5999999999999988
Q ss_pred ccCC
Q 029810 96 SRRK 99 (187)
Q Consensus 96 a~~~ 99 (187)
+..+
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 8643
No 137
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=127.84 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=78.4
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCc---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGK---VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~---i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
.++....++|||+|||+++++++|+++|..||. |..|.|+.+.. +.++|||||+|.+.++|++||+ |++..|+|+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 345677899999999999999999999999998 89999998887 8999999999999999999999 999999999
Q ss_pred EEEEEeccCC
Q 029810 90 YITVERSRRK 99 (187)
Q Consensus 90 ~l~v~~a~~~ 99 (187)
.|.|.++.++
T Consensus 83 ~i~V~~a~~~ 92 (107)
T 2lmi_A 83 YVEVYEINNE 92 (107)
T ss_dssp CCCCEECCHH
T ss_pred EEEEEECCHH
Confidence 9999998754
No 138
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=1.2e-19 Score=137.37 Aligned_cols=85 Identities=33% Similarity=0.462 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
+..+.++|||+|||+++++++|+++|++||+|..|.|+.+..++.++|||||+|.+.++|++||+.|++..+.|+.|.|.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 45577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 029810 95 RSRRK 99 (187)
Q Consensus 95 ~a~~~ 99 (187)
++...
T Consensus 91 ~~~~~ 95 (213)
T 4f02_A 91 WSQRD 95 (213)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 88654
No 139
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=120.87 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=74.4
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEE-EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASC-FLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~-~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
.+.....++|||+|||+++++++|+++|.+||.|..| .|+.+..++ .|||+|.+.++|++||+.||+..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 9 VPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3445567999999999999999999999999999999 577776543 49999999999999999999999999999
Q ss_pred EEEeccCC
Q 029810 92 TVERSRRK 99 (187)
Q Consensus 92 ~v~~a~~~ 99 (187)
.|+++.++
T Consensus 85 ~V~~a~~~ 92 (96)
T 2e44_A 85 KVAYIPDE 92 (96)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 99999876
No 140
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=1.3e-20 Score=119.73 Aligned_cols=75 Identities=23% Similarity=0.360 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
+|||+|||.++++++|+++|++||+|..|.|+.+..++.++|||||+|.+.++|++||+ +++..|.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998899999999999999999999999 5889999999999875
No 141
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.81 E-value=9.6e-21 Score=134.41 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
......++|||+|||+++|+++|+++|++|| |+.|.|+.+.. ++++|||||+|++.++|++|| .+|+..|.++.|.|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3456678999999999999999999999999 67999998876 899999999999999999999 69999999999999
Q ss_pred EeccCCC
Q 029810 94 ERSRRKR 100 (187)
Q Consensus 94 ~~a~~~~ 100 (187)
.++.+..
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 9987653
No 142
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=124.50 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=73.2
Q ss_pred CCCCCCCeEEE--cCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc-----
Q 029810 14 ETGNPGNTLYV--TGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL----- 86 (187)
Q Consensus 14 ~~~~~~~~l~V--~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i----- 86 (187)
....++.+||| +||++++++++|+++|++||+|..|.|+.+ +|||||+|++.++|++|++.|||.+|
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34567889999 779999999999999999999999887632 68999999999999999999999988
Q ss_pred CCeEEEEEeccCCCCCC
Q 029810 87 EGRYITVERSRRKRPRT 103 (187)
Q Consensus 87 ~g~~l~v~~a~~~~~~~ 103 (187)
.+..|.|.+++..+...
T Consensus 94 ~g~~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 94 QKITLYLNFVEKVQWSG 110 (114)
T ss_dssp CEEECEEEEESCCCCSS
T ss_pred CCcEEEEEecccCcccC
Confidence 68899999998655433
No 143
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.81 E-value=3.7e-19 Score=134.21 Aligned_cols=89 Identities=21% Similarity=0.403 Sum_probs=82.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
...++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 029810 97 RRKRPRTPT 105 (187)
Q Consensus 97 ~~~~~~~~~ 105 (187)
.++....+.
T Consensus 203 ~~~~~~~~~ 211 (216)
T 2qfj_A 203 VTPPMPLLT 211 (216)
T ss_dssp SSCSSTTSC
T ss_pred cCCCCCCCC
Confidence 987554443
No 144
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=4e-20 Score=124.36 Aligned_cols=85 Identities=24% Similarity=0.463 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
++....++|||+|||.++++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||+ ++..|+|+.|.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v 80 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKL 80 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEE
Confidence 344566899999999999999999999999999999999998 89999999999999999999999 899999999999
Q ss_pred EeccCCCC
Q 029810 94 ERSRRKRP 101 (187)
Q Consensus 94 ~~a~~~~~ 101 (187)
.++.++..
T Consensus 81 ~~a~~~~~ 88 (102)
T 2xs2_A 81 GPAIRKQN 88 (102)
T ss_dssp EEEEECC-
T ss_pred EECCcCcc
Confidence 99886543
No 145
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.5e-19 Score=127.73 Aligned_cols=84 Identities=21% Similarity=0.371 Sum_probs=79.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
....+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|++|+..||+..|+|+.|.|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 45567789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred Eecc
Q 029810 94 ERSR 97 (187)
Q Consensus 94 ~~a~ 97 (187)
.+|+
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9986
No 146
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=3.5e-20 Score=132.09 Aligned_cols=88 Identities=28% Similarity=0.432 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEE------EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASC------FLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 87 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~------~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~ 87 (187)
.+..++++|||+|||+++++++|+++|.+||.|..+ .+.. ..++.++|||||+|.+.++|++||..||+..|.
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 446678999999999999999999999999988764 1111 135778999999999999999999999999999
Q ss_pred CeEEEEEeccCCCCC
Q 029810 88 GRYITVERSRRKRPR 102 (187)
Q Consensus 88 g~~l~v~~a~~~~~~ 102 (187)
|+.|.|+++++...+
T Consensus 119 g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 119 GKPMVVQFARSARPK 133 (143)
T ss_dssp TEECEEEECCCSCC-
T ss_pred CcEEEEEECCCCCCc
Confidence 999999999876443
No 147
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=123.20 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
..++|||+|||..+++++|+++|++||.|..|.|+. .++||||+|.+.++|++||+.||+..|.|+.|.|+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998864 36799999999999999999999999999999999997
Q ss_pred CCC
Q 029810 98 RKR 100 (187)
Q Consensus 98 ~~~ 100 (187)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=2.6e-19 Score=128.59 Aligned_cols=82 Identities=26% Similarity=0.406 Sum_probs=75.6
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.....+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||..||+..|.|+.|.
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 445567899999999999999999999999999999999866 478999999999999999999999999999999
Q ss_pred EEeccCC
Q 029810 93 VERSRRK 99 (187)
Q Consensus 93 v~~a~~~ 99 (187)
|++++++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999865
No 149
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.80 E-value=8.1e-20 Score=127.45 Aligned_cols=84 Identities=24% Similarity=0.336 Sum_probs=74.9
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCcee--EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVA--SCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
..+....++|||+|||+++++++|+++|++| .|. .|.|+.+.. +.++|||||+|++.++|++||+ +++..|+|+.
T Consensus 36 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~ 112 (126)
T 2hgm_A 36 SADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRY 112 (126)
T ss_dssp TTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEE
Confidence 3445667899999999999999999999999 666 899998877 8999999999999999999999 5779999999
Q ss_pred EEEEeccCC
Q 029810 91 ITVERSRRK 99 (187)
Q Consensus 91 l~v~~a~~~ 99 (187)
|.|..+..+
T Consensus 113 I~V~~a~~~ 121 (126)
T 2hgm_A 113 IEVFKSSQE 121 (126)
T ss_dssp CCCEEECHH
T ss_pred EEEEECCHH
Confidence 999988654
No 150
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.80 E-value=4.7e-19 Score=128.52 Aligned_cols=84 Identities=27% Similarity=0.427 Sum_probs=79.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|++.|++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 029810 98 RKRP 101 (187)
Q Consensus 98 ~~~~ 101 (187)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6543
No 151
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.1e-20 Score=127.36 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCce----eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKV----ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i----~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
.....+|||+|||+++|+++|+++|++||.| ..|.|+.+ .+++++|||||+|++.++|++||+. |+..|.++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999975 68999888 4899999999999999999999995 9999999999
Q ss_pred EEEeccCC
Q 029810 92 TVERSRRK 99 (187)
Q Consensus 92 ~v~~a~~~ 99 (187)
.|..+.++
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99988653
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=7.8e-19 Score=127.04 Aligned_cols=82 Identities=30% Similarity=0.417 Sum_probs=78.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccC
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 98 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 98 (187)
.++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.|++..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999886
Q ss_pred CC
Q 029810 99 KR 100 (187)
Q Consensus 99 ~~ 100 (187)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 153
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=4.8e-19 Score=116.01 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
..++|||+|||+++++++|+++|++| .|..+.|. .++|||||+|.+.++|++|++.||+..|.|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 458899999999999999999999999999999999987
Q ss_pred CCC
Q 029810 98 RKR 100 (187)
Q Consensus 98 ~~~ 100 (187)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 154
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.79 E-value=1.1e-18 Score=129.97 Aligned_cols=85 Identities=20% Similarity=0.372 Sum_probs=80.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|++.||+..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 029810 97 RRKRP 101 (187)
Q Consensus 97 ~~~~~ 101 (187)
+++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87644
No 155
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.8e-18 Score=120.14 Aligned_cols=80 Identities=20% Similarity=0.205 Sum_probs=69.5
Q ss_pred CCCCCCe--EEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHHhCCCccCC--e
Q 029810 15 TGNPGNT--LYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGF-AFVTMDGVEDAERCIKYLNQSVLEG--R 89 (187)
Q Consensus 15 ~~~~~~~--l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~ai~~l~g~~i~g--~ 89 (187)
+..++++ |||+||++.+++++|.++|++||.|..|.|+.. .|| |||+|++.++|++|++.|||..|.| .
T Consensus 19 ~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~ 92 (124)
T 2e5i_A 19 PSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCC 92 (124)
T ss_dssp CCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS
T ss_pred CCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe
Confidence 3344554 578999999999999999999999999998642 276 9999999999999999999999987 5
Q ss_pred EEEEEeccCCC
Q 029810 90 YITVERSRRKR 100 (187)
Q Consensus 90 ~l~v~~a~~~~ 100 (187)
.|.|++|+++.
T Consensus 93 ~l~V~~Ak~~~ 103 (124)
T 2e5i_A 93 TLKIEYARPTR 103 (124)
T ss_dssp EEEEECCSCSC
T ss_pred EEEEEEecCCc
Confidence 89999998764
No 156
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.79 E-value=7.4e-19 Score=127.23 Aligned_cols=80 Identities=19% Similarity=0.127 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC--eEEEEE
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG--RYITVE 94 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g--~~l~v~ 94 (187)
....+|||+||++.+++++|+++|++||+|..|.|+... .++||||+|++.++|++|++.|||..|.+ +.|.|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 334578999999999999999999999999999987432 46899999999999999999999999965 999999
Q ss_pred eccCCC
Q 029810 95 RSRRKR 100 (187)
Q Consensus 95 ~a~~~~ 100 (187)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998763
No 157
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.79 E-value=1.1e-18 Score=121.94 Aligned_cols=79 Identities=20% Similarity=0.178 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHHhCCCccCC--eEEEE
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGF-AFVTMDGVEDAERCIKYLNQSVLEG--RYITV 93 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~ai~~l~g~~i~g--~~l~v 93 (187)
..-..|||+||++.+|+++|.++|++||+|..|.|+... ++| |||+|.+.++|++|++.|||..|.+ ..|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 344577799999999999999999999999999887542 577 9999999999999999999999988 89999
Q ss_pred EeccCCC
Q 029810 94 ERSRRKR 100 (187)
Q Consensus 94 ~~a~~~~ 100 (187)
++++++.
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998763
No 158
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=8.1e-19 Score=130.44 Aligned_cols=86 Identities=21% Similarity=0.370 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
..+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||.. ++..|+|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999985 89999999999999
Q ss_pred ccCCCCC
Q 029810 96 SRRKRPR 102 (187)
Q Consensus 96 a~~~~~~ 102 (187)
+.++...
T Consensus 180 a~~k~~~ 186 (196)
T 1l3k_A 180 ALSKQEM 186 (196)
T ss_dssp CC-----
T ss_pred cCChhHh
Confidence 9887654
No 159
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.78 E-value=9.2e-19 Score=121.48 Aligned_cols=82 Identities=29% Similarity=0.371 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.+..+.++|||+|| ++++++|+++|++||.|..|.|. .++|||||+|.+.++|++||+.|++..|.|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567899999996 69999999999999999999885 34789999999999999999999999999999999
Q ss_pred EeccCCCCCC
Q 029810 94 ERSRRKRPRT 103 (187)
Q Consensus 94 ~~a~~~~~~~ 103 (187)
.+++++....
T Consensus 106 ~~a~~~~~~~ 115 (121)
T 2bz2_A 106 NIARKQPMLD 115 (121)
T ss_dssp EECCSSCC--
T ss_pred EEeCCCCCCC
Confidence 9998775443
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1.1e-18 Score=129.73 Aligned_cols=87 Identities=28% Similarity=0.553 Sum_probs=78.8
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
..+..+.++|||+|||+++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+ +++..|.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEee
Confidence 3455678999999999999999999999999999999999999999999999999999999999998 489999999999
Q ss_pred EEeccCCC
Q 029810 93 VERSRRKR 100 (187)
Q Consensus 93 v~~a~~~~ 100 (187)
|.++....
T Consensus 86 v~~~~~~~ 93 (196)
T 1l3k_A 86 PKRAVSRE 93 (196)
T ss_dssp EEECCC--
T ss_pred eecccCcc
Confidence 99987654
No 161
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.78 E-value=1.8e-18 Score=126.01 Aligned_cols=81 Identities=21% Similarity=0.370 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
....++|||+|||..+++++|+++|++||.|..+.|+.+..++.++|||||+|.+.++|++|++.||+..|+|+.|.|++
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred c
Q 029810 96 S 96 (187)
Q Consensus 96 a 96 (187)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 162
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=112.18 Aligned_cols=76 Identities=26% Similarity=0.282 Sum_probs=67.0
Q ss_pred CCCCCe-EEEcCCCCCCcHHH----HHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 16 GNPGNT-LYVTGLSTRVTERD----LEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 16 ~~~~~~-l~V~~Lp~~~t~~~----L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
.++..+ |||+|||+.+++++ |.++|++|| +|..| ++ |+|||+|.+.++|++|++.|+|..|.|+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 345566 99999999999987 558999995 99988 23 8999999999999999999999999999
Q ss_pred EEEEEeccCCCC
Q 029810 90 YITVERSRRKRP 101 (187)
Q Consensus 90 ~l~v~~a~~~~~ 101 (187)
+|.|.+|+.+..
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999987654
No 163
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=1.5e-18 Score=114.00 Aligned_cols=80 Identities=23% Similarity=0.384 Sum_probs=62.8
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCc--cCCeE
Q 029810 13 TETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV--LEGRY 90 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~--i~g~~ 90 (187)
.....+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|++.++|++ |++.. +.+..
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 445678899999999999999999999999999999999864 58999999999999883 45554 56999
Q ss_pred EEEEeccCCCC
Q 029810 91 ITVERSRRKRP 101 (187)
Q Consensus 91 l~v~~a~~~~~ 101 (187)
|.|.++.++..
T Consensus 76 v~v~~a~~k~~ 86 (89)
T 3d2w_A 76 VHISNAEPKHN 86 (89)
T ss_dssp EEEEECC----
T ss_pred EEEEEcCCCCc
Confidence 99999987643
No 164
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.6e-19 Score=120.86 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=71.3
Q ss_pred CeEEEcCC----CCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC----HHH----HHHHHH--HhCCCc
Q 029810 20 NTLYVTGL----STRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VED----AERCIK--YLNQSV 85 (187)
Q Consensus 20 ~~l~V~~L----p~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~----a~~ai~--~l~g~~ 85 (187)
+.|||+|| |+.+++++|+++|+.||+|..|.++.|+.|+.++|||||+|.+ +++ |.+||. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred cCCeEEEEEecc
Q 029810 86 LEGRYITVERSR 97 (187)
Q Consensus 86 i~g~~l~v~~a~ 97 (187)
|+|..|.|++..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 165
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=119.09 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=68.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCC---CCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRT---RISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
.....++|||+|||+++++++|+++|++||+|. +.++.+..+ +.++|||||+|++.++|++||+.|+ .++|+.|
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 345678999999999999999999999999999 888877766 7889999999999999999999884 3666666
Q ss_pred EEEecc
Q 029810 92 TVERSR 97 (187)
Q Consensus 92 ~v~~a~ 97 (187)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 665543
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=2.3e-18 Score=130.34 Aligned_cols=81 Identities=27% Similarity=0.499 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
...+|||+|||+.+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||+.|||..|+|+.|.|++++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999885 4468999999999999999999999999999999999998
Q ss_pred CCC
Q 029810 98 RKR 100 (187)
Q Consensus 98 ~~~ 100 (187)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 654
No 167
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.9e-19 Score=115.20 Aligned_cols=79 Identities=23% Similarity=0.349 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
.+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.+..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45799999999999999999999999999999998754 478999999999999865331 34568999999999
Q ss_pred cCCCCC
Q 029810 97 RRKRPR 102 (187)
Q Consensus 97 ~~~~~~ 102 (187)
+++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=9.9e-19 Score=126.80 Aligned_cols=81 Identities=26% Similarity=0.486 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
+..+|||+|||.++++++|+++|++||.|..+.|+.+..++.++|||||+|.+.++|++|++ +++..|+|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45799999999999999999999999999999999998899999999999999999999998 89999999999999998
Q ss_pred CC
Q 029810 98 RK 99 (187)
Q Consensus 98 ~~ 99 (187)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 169
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=2.6e-18 Score=129.61 Aligned_cols=79 Identities=23% Similarity=0.276 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCC-CCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEe
Q 029810 17 NPGNTLYVTGLS-TRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVER 95 (187)
Q Consensus 17 ~~~~~l~V~~Lp-~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 95 (187)
.++++|||+||| +.+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 799999999999999999999998653 68999999999999999999999999999999999
Q ss_pred ccCCC
Q 029810 96 SRRKR 100 (187)
Q Consensus 96 a~~~~ 100 (187)
++.+.
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97543
No 170
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=8.2e-18 Score=121.94 Aligned_cols=81 Identities=30% Similarity=0.445 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC--eEEEE
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG--RYITV 93 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g--~~l~v 93 (187)
..+.++|||+|||..+++++|+++|++||.|..+.|+.+..++.++|||||+|.+.++|++|++.||+..|.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 4567899999999999999999999999999999999998889999999999999999999999999999988 99999
Q ss_pred Eec
Q 029810 94 ERS 96 (187)
Q Consensus 94 ~~a 96 (187)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=4.6e-18 Score=128.14 Aligned_cols=83 Identities=25% Similarity=0.348 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
.+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.+++||||+|.+.++|++||+.|++..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34589999999999999999999999999999999999888999999999999999999999999999999999999887
Q ss_pred cCC
Q 029810 97 RRK 99 (187)
Q Consensus 97 ~~~ 99 (187)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=3.2e-18 Score=111.50 Aligned_cols=73 Identities=19% Similarity=0.456 Sum_probs=66.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcC----C-------ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKE----G-------KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~----G-------~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
..+.++|||+|||+++++++|+++|++| | .|..+.+..+ ++||||+|.+.++|++|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3456899999999999999999999999 8 8999988754 689999999999999999 89999
Q ss_pred ccCCeEEEEEe
Q 029810 85 VLEGRYITVER 95 (187)
Q Consensus 85 ~i~g~~l~v~~ 95 (187)
.|.|+.|.|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999874
No 173
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.1e-17 Score=120.89 Aligned_cols=81 Identities=22% Similarity=0.378 Sum_probs=74.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccCC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 99 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 99 (187)
.+|||+|||.++++++|+++|++||.|..|.|+.+.. +.++|||||+|.+.++|++|++.|++..|.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4899999999999999999999999999999998864 668999999999999999999999999999999999998765
Q ss_pred CC
Q 029810 100 RP 101 (187)
Q Consensus 100 ~~ 101 (187)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=1.2e-17 Score=120.82 Aligned_cols=81 Identities=35% Similarity=0.526 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE--EEE
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY--ITV 93 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~--l~v 93 (187)
.....+|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|++|++.||+..|.|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 346689999999999999999999999999999999999888999999999999999999999999999999964 888
Q ss_pred Eec
Q 029810 94 ERS 96 (187)
Q Consensus 94 ~~a 96 (187)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=2e-17 Score=111.92 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCC-----CCcHHHHHHHhhcCCceeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 17 NPGNTLYVTGLST-----RVTERDLEKHFSKEGKVASCFLVVEPRT-RISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 17 ~~~~~l~V~~Lp~-----~~t~~~L~~~f~~~G~i~~~~i~~~~~~-~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
.++.+|+|.||.. +.++++|+++|++||.|..|.|+.+..+ +.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5678999999963 2368999999999999999999987653 678999999999999999999999999999999
Q ss_pred EEEEeccC
Q 029810 91 ITVERSRR 98 (187)
Q Consensus 91 l~v~~a~~ 98 (187)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=1.8e-17 Score=120.75 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHHHhCCCccC---CeEEE
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTR--ISRGFAFVTMDGVEDAERCIKYLNQSVLE---GRYIT 92 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~--~~~g~afV~f~~~~~a~~ai~~l~g~~i~---g~~l~ 92 (187)
+.++|||+|||+++++++|+++|++||+|..|.|+.+..++ .++|||||+|.+.++|++|++.|++..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998876 88999999999999999999999998775 57788
Q ss_pred EEeccCCCC
Q 029810 93 VERSRRKRP 101 (187)
Q Consensus 93 v~~a~~~~~ 101 (187)
|.++.....
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888775543
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=2e-17 Score=120.52 Aligned_cols=82 Identities=27% Similarity=0.406 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC---CeEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE---GRYI 91 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~---g~~l 91 (187)
...+..+|||+|||..+++++|+++|++||.|..+.|+.+. ++.++|||||+|.+.++|++|++.||+..|. ++.|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 34467899999999999999999999999999999999886 5888999999999999999999999998776 4899
Q ss_pred EEEecc
Q 029810 92 TVERSR 97 (187)
Q Consensus 92 ~v~~a~ 97 (187)
.|.||.
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999873
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=2.9e-17 Score=128.91 Aligned_cols=84 Identities=18% Similarity=0.373 Sum_probs=76.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHH----HHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLE----KHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR 89 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~----~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~ 89 (187)
.+..+.++|||+|||.++++++|+ ++|++||.|..|.|+. ++.++|||||+|.+.++|++||+.||+..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 356778999999999999999966 8999999999998875 577899999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 029810 90 YITVERSRRKR 100 (187)
Q Consensus 90 ~l~v~~a~~~~ 100 (187)
.|.|++++...
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999997654
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=1.6e-17 Score=121.42 Aligned_cols=80 Identities=21% Similarity=0.349 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
...+.++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|+..||+..|.|+.|.|.
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 4567889999999999999999999999999999999999
Q ss_pred eccCC
Q 029810 95 RSRRK 99 (187)
Q Consensus 95 ~a~~~ 99 (187)
+++++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99865
No 180
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.72 E-value=1.4e-17 Score=127.76 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCC---------cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 029810 15 TGNPGNTLYVTGLSTRV---------TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 85 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~---------t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~ 85 (187)
.....++|||+||+..+ ++++|+++|++||+|..|.|+.+ +|||||+|.+.++|+.|+++|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35567999999999998 79999999999999999999853 7899999999999999999999999
Q ss_pred c------------CCeEEEEEeccCCCC
Q 029810 86 L------------EGRYITVERSRRKRP 101 (187)
Q Consensus 86 i------------~g~~l~v~~a~~~~~ 101 (187)
| .|..|.|.||+..+.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999986543
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.71 E-value=4.8e-17 Score=124.38 Aligned_cols=82 Identities=26% Similarity=0.329 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCC-CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 14 ETGNPGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
.+..++++|||+|||. ++++++|+++|++||.|..|.|+.+. ++||||+|.+.++|++||+.|++..|.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4456789999999999 99999999999999999999998764 67999999999999999999999999999999
Q ss_pred EEeccCCC
Q 029810 93 VERSRRKR 100 (187)
Q Consensus 93 v~~a~~~~ 100 (187)
|.+++.+.
T Consensus 104 v~~a~~~~ 111 (229)
T 2adc_A 104 ITLSKHQN 111 (229)
T ss_dssp EECCSCCC
T ss_pred EEEecCcc
Confidence 99998654
No 182
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-16 Score=107.64 Aligned_cols=84 Identities=21% Similarity=0.301 Sum_probs=71.2
Q ss_pred CCCCCCCeEEEcCCCCCCc-----------HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 14 ETGNPGNTLYVTGLSTRVT-----------ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t-----------~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
....++.+|+|.||....+ +++|+++|++||.|..|.| .+. .++|||||+|.+.++|++||+.||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3456789999999954332 5899999999999999966 443 268999999999999999999999
Q ss_pred CCccCCeEEEEEeccCCCC
Q 029810 83 QSVLEGRYITVERSRRKRP 101 (187)
Q Consensus 83 g~~i~g~~l~v~~a~~~~~ 101 (187)
+..|+|+.|.|.++.++..
T Consensus 86 g~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TCEETTEECEEEECCSCCC
T ss_pred CCEECCcEEEEEEeCCCCC
Confidence 9999999999999986543
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.6e-17 Score=120.31 Aligned_cols=80 Identities=28% Similarity=0.514 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
+.++|||+|||.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999988999999999999999999999994 568999999998876
Q ss_pred CC
Q 029810 98 RK 99 (187)
Q Consensus 98 ~~ 99 (187)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 184
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.71 E-value=7.4e-17 Score=120.51 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccC
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRR 98 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 98 (187)
.++|||+|||+++++++|+++|++||.|..|.|+.+. ++.++|||||+|++.++|++||+.+ +..|+|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999876 4888999999999999999999855 5699999999998764
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.71 E-value=3e-17 Score=129.48 Aligned_cols=84 Identities=24% Similarity=0.379 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCC-CcHHHHHHHhhcCCceeEEEEeecCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 15 TGNPGNTLYVTGLSTR-VTERDLEKHFSKEGKVASCFLVVEPR-TRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~-~t~~~L~~~f~~~G~i~~~~i~~~~~-~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
...+.++|||+|||.. +++++|+++|++||.|..|.|+.+.. |+.++|||||+|.+.++|++|| .||+..|.|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 4567799999999999 99999999999999999999998776 5889999999999999999999 9999999999999
Q ss_pred EEeccCC
Q 029810 93 VERSRRK 99 (187)
Q Consensus 93 v~~a~~~ 99 (187)
|.+++++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999875
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=1e-16 Score=125.80 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CeEEEE
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GRYITV 93 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~-g~~l~v 93 (187)
...++++|||+|||..+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|++||+.||+..|. |+.|.|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34567899999999999999999999999999999998553 579999999999999999999999999 999999
Q ss_pred Eecc
Q 029810 94 ERSR 97 (187)
Q Consensus 94 ~~a~ 97 (187)
.|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9986
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.70 E-value=1.2e-16 Score=125.46 Aligned_cols=87 Identities=20% Similarity=0.171 Sum_probs=79.8
Q ss_pred CCCCCCCeEEEcCCCCCC-cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 14 ETGNPGNTLYVTGLSTRV-TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~-t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
......++|||+|||..+ ++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|++|+..|++..|.|+.|.
T Consensus 179 ~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 257 (284)
T 3smz_A 179 PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR 257 (284)
T ss_dssp TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Confidence 345678999999999995 999999999999999999998876 688899999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 029810 93 VERSRRKRP 101 (187)
Q Consensus 93 v~~a~~~~~ 101 (187)
|.++.++..
T Consensus 258 v~~a~~~~~ 266 (284)
T 3smz_A 258 VSFCAPGPP 266 (284)
T ss_dssp EEECCSSSC
T ss_pred EEEecCCCc
Confidence 999987654
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.69 E-value=2.2e-16 Score=123.98 Aligned_cols=85 Identities=25% Similarity=0.332 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
...++|||+|||.++++++|.++|..||.|..+.|+.+..++.++|||||+|.+.++|++|++.|++..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 029810 97 RRKRP 101 (187)
Q Consensus 97 ~~~~~ 101 (187)
.+...
T Consensus 173 ~~~~~ 177 (284)
T 3smz_A 173 DAGQL 177 (284)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 86543
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=2e-17 Score=120.92 Aligned_cols=86 Identities=21% Similarity=0.339 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
.+..+.++|||+|||.++++++|+++|..||.|.. .++.+..++.++|||||+|.+.++|++||+ |++..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 35677899999999999999999999999997765 233344467789999999999999999995 9999999999999
Q ss_pred EeccCCCC
Q 029810 94 ERSRRKRP 101 (187)
Q Consensus 94 ~~a~~~~~ 101 (187)
.++.++..
T Consensus 86 ~~~~~~~~ 93 (175)
T 1fje_B 86 EKPKGRDS 93 (175)
T ss_dssp ECCCCSSC
T ss_pred ecCCCccc
Confidence 99986543
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=118.88 Aligned_cols=78 Identities=26% Similarity=0.328 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 18 PGNTLYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 18 ~~~~l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
.+++|||+|||+ .+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|++||+.|++..|.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999998764 679999999999999999999999999999999999
Q ss_pred cCCC
Q 029810 97 RRKR 100 (187)
Q Consensus 97 ~~~~ 100 (187)
....
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8654
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=1.3e-16 Score=120.22 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCce--eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCe----E
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKV--ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGR----Y 90 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i--~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~----~ 90 (187)
.++.+|||+|||+.+++++|+++|++||.| ..+.|+.+. +..+|||||+|.+.++|++||..||+..|.+. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 467899999999999999999999999998 888887664 44569999999999999999999999999876 5
Q ss_pred EEEEec
Q 029810 91 ITVERS 96 (187)
Q Consensus 91 l~v~~a 96 (187)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=3.9e-16 Score=119.31 Aligned_cols=78 Identities=27% Similarity=0.386 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CeEEEEE
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GRYITVE 94 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~-g~~l~v~ 94 (187)
.+.++|||+|||..+++++|+++|++|| .|..|.|+.+ .++||||+|.+.++|++||+.|++..|. |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999998643 2679999999999999999999999999 9999999
Q ss_pred eccCC
Q 029810 95 RSRRK 99 (187)
Q Consensus 95 ~a~~~ 99 (187)
|++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99864
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=117.66 Aligned_cols=78 Identities=27% Similarity=0.381 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CeEEEEE
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE-GRYITVE 94 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~-g~~l~v~ 94 (187)
.+.++|||+|||..+++++|+++|++|| .|..|.|+.+. +|+|||+|.+.++|++|+..||+..|. |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4589999999999999999999999999 99999986542 689999999999999999999999999 9999999
Q ss_pred eccCC
Q 029810 95 RSRRK 99 (187)
Q Consensus 95 ~a~~~ 99 (187)
|++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99864
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=4.2e-16 Score=121.41 Aligned_cols=79 Identities=25% Similarity=0.445 Sum_probs=72.2
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
....+.++|||+|||+++|+++|+++|++||.|..|.|..+ +|||||+|.+.++|++||..|++..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34456689999999999999999999999999999998643 689999999999999999999999999999999
Q ss_pred EeccC
Q 029810 94 ERSRR 98 (187)
Q Consensus 94 ~~a~~ 98 (187)
.++.+
T Consensus 91 ~~a~~ 95 (261)
T 3sde_A 91 RFATH 95 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99875
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.65 E-value=5.3e-16 Score=104.83 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=70.7
Q ss_pred CCCCeEEEcCC--CCCCc--------HHHHHHHhhcCCceeEEEEeecCCC--CCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 17 NPGNTLYVTGL--STRVT--------ERDLEKHFSKEGKVASCFLVVEPRT--RISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 17 ~~~~~l~V~~L--p~~~t--------~~~L~~~f~~~G~i~~~~i~~~~~~--~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
.++..|.|.|+ |..+. +++|+++|++||.|..|.|+.+..+ +.++|+|||+|++.++|++|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 33332 3789999999999999999887654 357899999999999999999999999
Q ss_pred ccCCeEEEEEeccC
Q 029810 85 VLEGRYITVERSRR 98 (187)
Q Consensus 85 ~i~g~~l~v~~a~~ 98 (187)
.|+|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.64 E-value=7.5e-16 Score=119.94 Aligned_cols=83 Identities=27% Similarity=0.323 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC-CccC---CeEEEE
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ-SVLE---GRYITV 93 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g-~~i~---g~~l~v 93 (187)
+.++|||+|||..+++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|++ ..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4689999999999999999999999999999999998 5899999999999999999999999955 4444 899999
Q ss_pred EeccCCCC
Q 029810 94 ERSRRKRP 101 (187)
Q Consensus 94 ~~a~~~~~ 101 (187)
.++.....
T Consensus 174 ~~~~~~~~ 181 (261)
T 3sde_A 174 EPMEQFDD 181 (261)
T ss_dssp EECCCEES
T ss_pred eeccccCc
Confidence 99886543
No 197
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.63 E-value=1.5e-15 Score=104.68 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCC--C---CcHHHHHHHhhcCCceeEEEEeecCC----CCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029810 18 PGNTLYVTGLST--R---VTERDLEKHFSKEGKVASCFLVVEPR----TRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 88 (187)
Q Consensus 18 ~~~~l~V~~Lp~--~---~t~~~L~~~f~~~G~i~~~~i~~~~~----~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g 88 (187)
++.+|+|.|+-. + -.++||+++|++||+|..|.|+.+.. ++.++|++||+|.+.++|++|++.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678999999842 2 23689999999999999999998754 45678999999999999999999999999999
Q ss_pred eEEEEEeccC
Q 029810 89 RYITVERSRR 98 (187)
Q Consensus 89 ~~l~v~~a~~ 98 (187)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.62 E-value=9.2e-16 Score=120.92 Aligned_cols=83 Identities=24% Similarity=0.309 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEec
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERS 96 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 96 (187)
..++|||+|||..+++++|.++|.+|| .|..|.|+.+.. +.++|||||+|.+.++|++|++.|++..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999988765 678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 029810 97 RRKRP 101 (187)
Q Consensus 97 ~~~~~ 101 (187)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 86543
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.7e-15 Score=98.15 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=64.1
Q ss_pred CCeEEEcCCC-------CCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 19 GNTLYVTGLS-------TRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 19 ~~~l~V~~Lp-------~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
...|.|.-.. ..+++++|+++|++||+|..|.|+ +.++|||||+|++.++|++||+.++ .+.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 5677775443 458999999999999999999987 3568999999999999999999754 4679999
Q ss_pred EEEeccCCCCC
Q 029810 92 TVERSRRKRPR 102 (187)
Q Consensus 92 ~v~~a~~~~~~ 102 (187)
.|+|++++...
T Consensus 83 ~V~~a~~~~~~ 93 (100)
T 2d9o_A 83 KISWLEGQPQD 93 (100)
T ss_dssp EEECSSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.62 E-value=2.7e-16 Score=106.16 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=63.0
Q ss_pred EcCCCCCCcHHHHHHHh------------hcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 24 VTGLSTRVTERDLEKHF------------SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 24 V~~Lp~~~t~~~L~~~f------------~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
+.||++.+++++|+++| ++||.|..|.|+.+.. +.++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777777776666 9999999999987764 6789999999999999999999999999999999
Q ss_pred EEEec
Q 029810 92 TVERS 96 (187)
Q Consensus 92 ~v~~a 96 (187)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=1.5e-15 Score=110.45 Aligned_cols=76 Identities=18% Similarity=0.447 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcC----C-------ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKE----G-------KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 86 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~----G-------~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i 86 (187)
+.++|||+|||.++++++|+++|++| | .|..+.+.. ++|||||+|.+.++|++|| .|++..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 666666643 3789999999999999999 7999999
Q ss_pred CCeEEEEEeccCCC
Q 029810 87 EGRYITVERSRRKR 100 (187)
Q Consensus 87 ~g~~l~v~~a~~~~ 100 (187)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999977543
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=2.1e-15 Score=111.97 Aligned_cols=76 Identities=18% Similarity=0.433 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcC----C-------ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKE----G-------KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 86 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~----G-------~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i 86 (187)
..++|||+|||+++++++|+++|++| | .|..+.+. .++|||||+|.+.++|++|| .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 56899999999999999999999999 4 55555553 34789999999999999999 7999999
Q ss_pred CCeEEEEEeccCCC
Q 029810 87 EGRYITVERSRRKR 100 (187)
Q Consensus 87 ~g~~l~v~~a~~~~ 100 (187)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999987653
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.57 E-value=5.2e-15 Score=119.11 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=66.7
Q ss_pred CCCCCCCCeEEEcC--CCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC---
Q 029810 13 TETGNPGNTLYVTG--LSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE--- 87 (187)
Q Consensus 13 ~~~~~~~~~l~V~~--Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~--- 87 (187)
.....++.+|||+| |+..+++++|+++|++||+|..|.|.. .+|||||+|++.++|++||+.|||.++.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 34567889999999 578999999999999999999987753 3789999999999999999999999773
Q ss_pred Ce--EEEEEecc
Q 029810 88 GR--YITVERSR 97 (187)
Q Consensus 88 g~--~l~v~~a~ 97 (187)
|+ .|.|.++.
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 44 56777764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.51 E-value=7.4e-14 Score=95.54 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=66.7
Q ss_pred CCCCCCeEEEcCCCCCC----------cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 15 TGNPGNTLYVTGLSTRV----------TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~----------t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
+..++..|.|.|+=... .++||+++|++||.|..|.|..+. .+|++||+|.+.++|++|++.|||.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34567888888873321 236799999999999999886543 4799999999999999999999999
Q ss_pred ccCCeEEEEEeccC
Q 029810 85 VLEGRYITVERSRR 98 (187)
Q Consensus 85 ~i~g~~l~v~~a~~ 98 (187)
.|+|+.|.|+++..
T Consensus 79 ~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 79 WFAGKMITAAYVPL 92 (114)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCEEEEEEEEcH
Confidence 99999999999753
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.4e-13 Score=94.59 Aligned_cols=80 Identities=19% Similarity=0.138 Sum_probs=71.2
Q ss_pred CCCCCCCCeEEEcCCCCC-CcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC-HHHHHHHHHHhC--CCccCC
Q 029810 13 TETGNPGNTLYVTGLSTR-VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG-VEDAERCIKYLN--QSVLEG 88 (187)
Q Consensus 13 ~~~~~~~~~l~V~~Lp~~-~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~-~~~a~~ai~~l~--g~~i~g 88 (187)
+-+..+++.|||+||+.. ++.++|+++|++||+|..|.+..+.. .|||.|.+ .++|++|+..|+ +.+|++
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 446788999999999999 99999999999999999999987753 69999999 899999999995 678999
Q ss_pred eEEEEEeccC
Q 029810 89 RYITVERSRR 98 (187)
Q Consensus 89 ~~l~v~~a~~ 98 (187)
..+++++...
T Consensus 86 ~~~~~evL~G 95 (121)
T 1owx_A 86 KEVTWEVLEG 95 (121)
T ss_dssp SSEEEEECCH
T ss_pred cEEEEEECCC
Confidence 9999987654
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=84.88 Aligned_cols=76 Identities=25% Similarity=0.278 Sum_probs=63.9
Q ss_pred CCCCCeEEEcCCCC----CCcH----HHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029810 16 GNPGNTLYVTGLST----RVTE----RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLE 87 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~----~~t~----~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~ 87 (187)
.++..||+|.-++. +.-. .+|.+.|.+||+|..++|+.+. +||+|.+.++|.+||+ |||..|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 46778888876652 2222 6799999999999999998653 8999999999999999 9999999
Q ss_pred CeEEEEEeccCCC
Q 029810 88 GRYITVERSRRKR 100 (187)
Q Consensus 88 g~~l~v~~a~~~~ 100 (187)
|+.|+|+++++.-
T Consensus 75 Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 75 NRTITIALKSPSG 87 (91)
T ss_dssp TEEEEEEECCCSS
T ss_pred CeEEEEEeCCCCc
Confidence 9999999998653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=7.8e-12 Score=81.43 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=62.6
Q ss_pred CCCCCCeEEEcCCCCC------CcH---HHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 029810 15 TGNPGNTLYVTGLSTR------VTE---RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSV 85 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~------~t~---~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~ 85 (187)
..++..||+|.-++.. ..+ .+|.+.|.+||+|..++|+.+ -+||+|.+.++|.+||+ |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCee
Confidence 4567889999877632 221 569999999999999999866 39999999999999999 99999
Q ss_pred cCCeEEEEEecc
Q 029810 86 LEGRYITVERSR 97 (187)
Q Consensus 86 i~g~~l~v~~a~ 97 (187)
|+|+.|+|++..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999999854
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.15 E-value=1.3e-10 Score=88.10 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=60.1
Q ss_pred CcHHHHHHHhhcCCceeEEEEeecC----CCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEecc
Q 029810 31 VTERDLEKHFSKEGKVASCFLVVEP----RTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSR 97 (187)
Q Consensus 31 ~t~~~L~~~f~~~G~i~~~~i~~~~----~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 97 (187)
-.+++|.+.|++||.|..+.|+.+. .++..+|++||+|.+.++|++|+..|||..|+|+.|.|.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3567899999999999999998554 355889999999999999999999999999999999999975
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.4e-08 Score=67.49 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcC-----CceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKE-----GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRY 90 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~-----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~ 90 (187)
.+...+|-|-|||..++++.|..+++++ |.|..|.+..+- +-|+|+|.+...|-+|.-+|+|.+|.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3456788899999999999999999999 999999888663 36999999999999999999999999999
Q ss_pred EEEEe
Q 029810 91 ITVER 95 (187)
Q Consensus 91 l~v~~ 95 (187)
|.|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99864
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.1e-05 Score=53.08 Aligned_cols=74 Identities=23% Similarity=0.264 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcC-----CceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKE-----GKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYI 91 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~-----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l 91 (187)
....+|.|.|||+.+.++.|.-+|+.- |+|..+.... +-|+|+|.+.+.|+.+|+ -..+.|++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 356899999999999999999999862 4888887753 369999999999999988 44678999999
Q ss_pred EEEeccCC
Q 029810 92 TVERSRRK 99 (187)
Q Consensus 92 ~v~~a~~~ 99 (187)
.|....+.
T Consensus 77 sV~P~~~~ 84 (104)
T 2dhx_A 77 SLRPAPPR 84 (104)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCC
Confidence 99765543
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.22 E-value=4.4e-06 Score=55.19 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=63.9
Q ss_pred CCCeEEEcCCCCCC-c----HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 029810 18 PGNTLYVTGLSTRV-T----ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYIT 92 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~-t----~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~ 92 (187)
..++|+|+||+.++ . .+.++++|..|+++....+++.. .=..|.|.++++|.+|-..||+..|.|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45789999998865 2 25789999999999888777543 2579999999999999999999999999999
Q ss_pred EEeccCC
Q 029810 93 VERSRRK 99 (187)
Q Consensus 93 v~~a~~~ 99 (187)
|-++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998743
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.19 E-value=8e-06 Score=53.14 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=45.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
....++| ++|.++...||.++|+.||.| .|.++.|- .|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3455556 999999999999999999943 45665542 79999999999999999764
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.18 E-value=1.9e-05 Score=51.13 Aligned_cols=80 Identities=13% Similarity=0.102 Sum_probs=61.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCC--cceEEEEEecCHHHHHHHHHHhCCCccCCe-----EEE
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRI--SRGFAFVTMDGVEDAERCIKYLNQSVLEGR-----YIT 92 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~--~~g~afV~f~~~~~a~~ai~~l~g~~i~g~-----~l~ 92 (187)
++|.|.+||+.+|++++.+.+..+..+....++..+.+.. ...-|+|.|.+.+++....+.++|+.|-+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5789999999999999999999988777666654443222 235699999999999999999999976432 345
Q ss_pred EEeccCC
Q 029810 93 VERSRRK 99 (187)
Q Consensus 93 v~~a~~~ 99 (187)
|++|--+
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 6776533
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=2.6e-05 Score=52.85 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=58.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC-eEEEEE
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG-RYITVE 94 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g-~~l~v~ 94 (187)
....+-|.|-++|+.. ...|...|++||+|.+.... ....|..|.|++..+|++||. .||..|++ ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 4456788888999885 56678889999999988762 124699999999999999999 79999985 566666
Q ss_pred ec
Q 029810 95 RS 96 (187)
Q Consensus 95 ~a 96 (187)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.95 E-value=1.5e-05 Score=51.98 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=45.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
..++| ++|.++...||.++|+.|| -..|.++.|- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999 4446666542 79999999999999999775
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.77 E-value=6.2e-05 Score=49.11 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=55.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCC--cceEEEEEecCHHHHHHHHHHhCCCccCCe-----EE
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRI--SRGFAFVTMDGVEDAERCIKYLNQSVLEGR-----YI 91 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~--~~g~afV~f~~~~~a~~ai~~l~g~~i~g~-----~l 91 (187)
.-+|.|..||+.+||+++.+.+..+-++....++..+.+.+ ...-|+|.|.+.+++....+.++|..|-+. ..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 46899999999999999888887665543322222222211 123589999999999999999999876432 45
Q ss_pred EEEecc
Q 029810 92 TVERSR 97 (187)
Q Consensus 92 ~v~~a~ 97 (187)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 567764
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.49 E-value=0.00012 Score=50.32 Aligned_cols=78 Identities=14% Similarity=0.140 Sum_probs=55.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeE-EEEee------------cCCCC-CcceEEEEEecCHHHHHHHHHHhCC
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVAS-CFLVV------------EPRTR-ISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~-~~i~~------------~~~~~-~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
..+-|.|-+.|+..+. .|.+.|++||.|.+ +.+.. ..... ....|..|.|++..+|++||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3467778899877664 46678999999876 22111 00001 124699999999999999999 899
Q ss_pred CccCCeEEEEEecc
Q 029810 84 SVLEGRYITVERSR 97 (187)
Q Consensus 84 ~~i~g~~l~v~~a~ 97 (187)
..|+|.-|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887764
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.17 E-value=0.00023 Score=59.20 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=41.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
.+|||. +|..+++.+|.++|++||.|..+.+-.+. ..||.|||.+.+++.+++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 789997 79999999999999999999999886543 3599999999999887765
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.78 E-value=0.0017 Score=45.76 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=28.4
Q ss_pred EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 48 SCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 48 ~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
.+.|+++.. .++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhccc
Confidence 355666653 57899999999999999999988764
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.59 E-value=0.0011 Score=46.52 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=36.3
Q ss_pred CCcceEEEEEecCHHHHHHHHHHh-CCCccCCeEEEEEeccC
Q 029810 58 RISRGFAFVTMDGVEDAERCIKYL-NQSVLEGRYITVERSRR 98 (187)
Q Consensus 58 ~~~~g~afV~f~~~~~a~~ai~~l-~g~~i~g~~l~v~~a~~ 98 (187)
...+|+++|+|.+.++|++|++.| |+..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 455899999999999999999999 9999999 999998765
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.29 E-value=0.062 Score=45.28 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=44.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
...++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4566666 88888999999999999953 4555433 2799999999999999998854
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=93.89 E-value=0.17 Score=30.86 Aligned_cols=68 Identities=13% Similarity=0.329 Sum_probs=43.3
Q ss_pred eEEEc-CCCCCCcHHHHHHHhhcCC-----ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEE
Q 029810 21 TLYVT-GLSTRVTERDLEKHFSKEG-----KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVE 94 (187)
Q Consensus 21 ~l~V~-~Lp~~~t~~~L~~~f~~~G-----~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 94 (187)
+|||. +-...+...+|..++..-+ .|-.+.|.. .|.||+... +.|+.+++.|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 56663 2233667778888876544 455666642 389998864 46888999999999999999988
Q ss_pred ecc
Q 029810 95 RSR 97 (187)
Q Consensus 95 ~a~ 97 (187)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 223
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=93.08 E-value=0.54 Score=38.75 Aligned_cols=9 Identities=11% Similarity=0.073 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 029810 71 VEDAERCIK 79 (187)
Q Consensus 71 ~~~a~~ai~ 79 (187)
.+++..++.
T Consensus 116 e~~L~~~F~ 124 (437)
T 3pgw_S 116 ESKLRREFE 124 (437)
T ss_pred HHHHHHHHH
Confidence 333333333
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=92.09 E-value=1.5 Score=27.88 Aligned_cols=72 Identities=11% Similarity=0.166 Sum_probs=52.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC-------ccC
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS-------VLE 87 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~-------~i~ 87 (187)
....++-|-|-|||..+-..++.-.....|---.|..+ -|-|.|.|.+.++...||.+|-.+ +|.
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieir 79 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIR 79 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEET
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEc
Confidence 34567888899999999888887777777765556655 346999999999999999877433 345
Q ss_pred CeEEEEE
Q 029810 88 GRYITVE 94 (187)
Q Consensus 88 g~~l~v~ 94 (187)
|+.+.|-
T Consensus 80 gqicdvi 86 (129)
T 4eyt_A 80 GQICDVI 86 (129)
T ss_dssp TEEEEEE
T ss_pred ceeeeee
Confidence 6655553
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=70.64 E-value=13 Score=21.47 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=40.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKY 80 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 80 (187)
.++.|.++.-..-...|...+.. ..|..+.+... .+.+.|+|.+.++...+|+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 46788999887778889999988 77887777432 34678888756666666664
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=65.06 E-value=17 Score=25.85 Aligned_cols=48 Identities=13% Similarity=0.039 Sum_probs=32.8
Q ss_pred CeEEEcCCCC-C--------CcHHHHHHHh--hcCCceeEEEEeecCCCCCcceEEEEEecC
Q 029810 20 NTLYVTGLST-R--------VTERDLEKHF--SKEGKVASCFLVVEPRTRISRGFAFVTMDG 70 (187)
Q Consensus 20 ~~l~V~~Lp~-~--------~t~~~L~~~f--~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 70 (187)
..+.|-|+|. . ...++|++.| ..|.++.-. .+.+.. -..|+|.|+|..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~-~l~~~~--Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVR-PLWNYL--GHSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEE-EEECSS--BEEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeE-ecccCC--CCceeEEEEecC
Confidence 4566788887 2 2347899977 999887644 444432 247899999985
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=62.99 E-value=16 Score=22.85 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=24.9
Q ss_pred eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 46 VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 46 i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
|..+.++. ...||.||++...++...+|..+.+.
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 55555543 25899999999988888888766653
No 228
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=59.08 E-value=1.5 Score=30.52 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=16.2
Q ss_pred HHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEec
Q 029810 34 RDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD 69 (187)
Q Consensus 34 ~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 69 (187)
+|+.++|...|.|+.... .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 456677777776654432 2789999875
No 229
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=57.60 E-value=35 Score=21.92 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=28.9
Q ss_pred CCCcHHHHHHHhh-cCC---ceeEE-EEeecCCCCCcceEEEEEecCHHHHHHH
Q 029810 29 TRVTERDLEKHFS-KEG---KVASC-FLVVEPRTRISRGFAFVTMDGVEDAERC 77 (187)
Q Consensus 29 ~~~t~~~L~~~f~-~~G---~i~~~-~i~~~~~~~~~~g~afV~f~~~~~a~~a 77 (187)
.+.+..+|++.++ .|+ .++.| .+......+++.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 4667788877765 344 23333 34455556677778866 7777666554
No 230
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=57.04 E-value=34 Score=22.26 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=28.0
Q ss_pred CCcHHHHHHHhh-cCC---ceeEE-EEeecCCCCCcceEEEEEecCHHHHHH
Q 029810 30 RVTERDLEKHFS-KEG---KVASC-FLVVEPRTRISRGFAFVTMDGVEDAER 76 (187)
Q Consensus 30 ~~t~~~L~~~f~-~~G---~i~~~-~i~~~~~~~~~~g~afV~f~~~~~a~~ 76 (187)
+.+..+|++.++ .|+ .++.| .+......+++.|||.| |.+.+.|.+
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 566777766664 344 23333 34444456777788876 778777765
No 231
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=56.84 E-value=36 Score=21.84 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=43.4
Q ss_pred CCCCCCcHHHHHHHh-hcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEEEeccCC
Q 029810 26 GLSTRVTERDLEKHF-SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITVERSRRK 99 (187)
Q Consensus 26 ~Lp~~~t~~~L~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 99 (187)
.++..+.-+||..-. ..||.-..+.+. +. -..|-..+.++..+||+.|+-. ..-+.|+|-+..++
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 456778877775554 578877776665 21 3788899999999999987643 23334555444443
No 232
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=56.37 E-value=24 Score=19.68 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=38.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC---HHHHHHHHHH
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG---VEDAERCIKY 80 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~---~~~a~~ai~~ 80 (187)
.++.|.++.-..-...|...+.....|..+.+... .+-+.|+|.. .++..++|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 46778888877777889999998888887777543 2367788743 4445555553
No 233
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=55.05 E-value=25 Score=22.78 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=25.5
Q ss_pred ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 45 KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 45 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
.|..+..... .+||-|||=....++..|+..+...
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 3556555422 3889999999999999998866543
No 234
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=52.00 E-value=16 Score=31.49 Aligned_cols=56 Identities=13% Similarity=0.277 Sum_probs=39.4
Q ss_pred CCCCCcHHHHHHHhh----cCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029810 27 LSTRVTERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 27 Lp~~~t~~~L~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
++.+.+--||..+|- .+|.|+++.|...+... ...+++|.|.+.++|.+++..+-.
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~-~~~~~~~~f~d~~~a~~av~~i~~ 410 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPE-YQKYGSVAFPNFEQGVACLREIAK 410 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCS-EEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCc-cccccccccCCchhhhhhHHHHHH
Confidence 444444457888883 67889988876554322 345789999999999998886643
No 235
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=51.87 E-value=53 Score=22.28 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHhh-cCCc---eeEE-EEeecCCCCCcceEEEEEecCHHHHHH
Q 029810 29 TRVTERDLEKHFS-KEGK---VASC-FLVVEPRTRISRGFAFVTMDGVEDAER 76 (187)
Q Consensus 29 ~~~t~~~L~~~f~-~~G~---i~~~-~i~~~~~~~~~~g~afV~f~~~~~a~~ 76 (187)
...+..+|++.++ .|+. ++.| .|......+.+.|||.| |++.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 3577888888875 5552 2333 34445556667778877 777777664
No 236
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=50.31 E-value=42 Score=20.98 Aligned_cols=55 Identities=7% Similarity=0.018 Sum_probs=33.8
Q ss_pred EEEcCCCCCCcHHHHHHHhh-cCC--ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 029810 22 LYVTGLSTRVTERDLEKHFS-KEG--KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 22 l~V~~Lp~~~t~~~L~~~f~-~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 81 (187)
|.+-.+|..++-++|.+.+. .|. .-..+.|.+..+.| -+|++.+.++.+.|+..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCC-----CcccccCHHHHHHHHHHH
Confidence 44556788889888765553 232 11223333322223 567899999999999844
No 237
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=49.38 E-value=31 Score=21.73 Aligned_cols=61 Identities=11% Similarity=-0.006 Sum_probs=37.2
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCcee---EEEEeecCCCCCcceEEEEEec--CHHHHHHHHHHhCC
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVA---SCFLVVEPRTRISRGFAFVTMD--GVEDAERCIKYLNQ 83 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~---~~~i~~~~~~~~~~g~afV~f~--~~~~a~~ai~~l~g 83 (187)
.|.|.-....+.+..|-++..+|+.-. .-.|-. ..+...|.-+|++. +.++.++|+..|..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~--i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKN--TKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEE--ETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEE--eCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 444543334566667778878887433 333322 23445678888887 46778888887754
No 238
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=48.90 E-value=51 Score=21.20 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHhhc-CC---ceeEE-EEeecCCCCCcceEEEEEecCHHHHHH
Q 029810 29 TRVTERDLEKHFSK-EG---KVASC-FLVVEPRTRISRGFAFVTMDGVEDAER 76 (187)
Q Consensus 29 ~~~t~~~L~~~f~~-~G---~i~~~-~i~~~~~~~~~~g~afV~f~~~~~a~~ 76 (187)
.+.+..+|++.+++ |+ .+..| .+......+++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46677888777653 34 23333 44455556777788876 777777664
No 239
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=48.63 E-value=62 Score=22.09 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=32.2
Q ss_pred HHHHHhhcCCceeEEEEeecC---------------CCCCcceEEEEEecCHHHHHHHHHHh
Q 029810 35 DLEKHFSKEGKVASCFLVVEP---------------RTRISRGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 35 ~L~~~f~~~G~i~~~~i~~~~---------------~~~~~~g~afV~f~~~~~a~~ai~~l 81 (187)
...++|..||.+.-+.+.-+. ..+..--|.+|+|.+.+...++.+++
T Consensus 49 ~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~kv 110 (141)
T 2okq_A 49 KAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKM 110 (141)
T ss_dssp HHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 356789999988777655332 11222347899999999888887543
No 240
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=47.99 E-value=58 Score=21.58 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=41.0
Q ss_pred eEEEcCCCCCCcHHHH---HHHhhcCCceeEEEEeecCCCCCcceEEEEEec--CHHHHHHHHHHhC-------CC---c
Q 029810 21 TLYVTGLSTRVTERDL---EKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD--GVEDAERCIKYLN-------QS---V 85 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L---~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~--~~~~a~~ai~~l~-------g~---~ 85 (187)
.|.|.++|..+..+-. ..+-..|..-....|+ |...|..-|.|. +.+..++|++.|- |. .
T Consensus 44 ~i~itgvpeqvrkelakeaerl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtyt 118 (170)
T 4hhu_A 44 VIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYT 118 (170)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEE
Confidence 4667899987654322 2223344433334443 334667788885 7888888887653 22 4
Q ss_pred cCCeEEEEEe
Q 029810 86 LEGRYITVER 95 (187)
Q Consensus 86 i~g~~l~v~~ 95 (187)
+.|..|.|..
T Consensus 119 l~gn~l~i~i 128 (170)
T 4hhu_A 119 LSGNRLVIVI 128 (170)
T ss_dssp ECSSEEEEEE
T ss_pred EeCCEEEEEE
Confidence 5666666554
No 241
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=46.94 E-value=54 Score=22.65 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=27.9
Q ss_pred CCcHHHHHHHhhc-CCc---eeEE-EEeecCCCCCcceEEEEEecCHHHHHH
Q 029810 30 RVTERDLEKHFSK-EGK---VASC-FLVVEPRTRISRGFAFVTMDGVEDAER 76 (187)
Q Consensus 30 ~~t~~~L~~~f~~-~G~---i~~~-~i~~~~~~~~~~g~afV~f~~~~~a~~ 76 (187)
+.+..+|++.++. |+. ++.| .|......+.+.|||.| |++.+.|..
T Consensus 32 TpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 6677888777754 542 2222 33344445666778877 777777664
No 242
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=45.74 E-value=40 Score=19.05 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=40.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEec----CHHHHHHHHHHh
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD----GVEDAERCIKYL 81 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~----~~~~a~~ai~~l 81 (187)
.++.|.++.-..-...|...+.....|..+.+... .+-+.|+|. +.++..++|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 35778888877677889999998878887777543 346888885 455666666643
No 243
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=48.95 E-value=5.1 Score=26.13 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=36.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcc-eEEEEEecCHHHHHHHHHHhCCCc
Q 029810 18 PGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISR-GFAFVTMDGVEDAERCIKYLNQSV 85 (187)
Q Consensus 18 ~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~-g~afV~f~~~~~a~~ai~~l~g~~ 85 (187)
...+|-|..+ ..+++|..+..+.+ +..+.+......|+.- -.-+=.|.+.++|.+|+..|....
T Consensus 24 ~~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 24 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 3455555433 34566777777775 3444444322222111 123457889999999999887643
No 244
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=41.59 E-value=19 Score=27.52 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=25.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEe
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLV 52 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~ 52 (187)
..+.|+|||..++..-|.+++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999765555554443
No 245
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=40.97 E-value=51 Score=19.39 Aligned_cols=66 Identities=5% Similarity=0.029 Sum_probs=40.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 029810 16 GNPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVL 86 (187)
Q Consensus 16 ~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i 86 (187)
......|.|+-+......+.|...+...|.-..| ... +...-.-+--|.+.++|++++..|...-+
T Consensus 6 ~~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i--~~~---~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 6 SSGLYKVQIGAFKVKANADSLASNAEAKGFDSIV--LLK---DGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp CCCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEE--EEE---TTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEE--ecC---CcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 3445677778777666666677766655632222 211 11122344578999999999998875444
No 246
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=40.92 E-value=36 Score=24.77 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=21.2
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCC
Q 029810 60 SRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 60 ~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
-+||-|||=....++..||+.+.+.
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhh
Confidence 4789999999999999998876653
No 247
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=40.46 E-value=35 Score=27.22 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=35.8
Q ss_pred eEEEcCCCCC---CcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 21 TLYVTGLSTR---VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 21 ~l~V~~Lp~~---~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
.-+|||+..- -....+.++..+||.|..+.+. +.-+|...+.+.++.++.
T Consensus 18 ~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~ 70 (476)
T 3e6i_A 18 LPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALL 70 (476)
T ss_dssp BTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHH
T ss_pred cccccChhhhccccHhHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHh
Confidence 4457877542 2346678888999998877662 246777889999888886
No 248
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.93 E-value=18 Score=23.01 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=15.7
Q ss_pred EcCCCCCCcHHHHHHHhhc-CCc
Q 029810 24 VTGLSTRVTERDLEKHFSK-EGK 45 (187)
Q Consensus 24 V~~Lp~~~t~~~L~~~f~~-~G~ 45 (187)
|.+|...||-+||...+.+ .|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 4578889999998876544 353
No 249
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=37.47 E-value=32 Score=26.11 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=24.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCceeEEE
Q 029810 19 GNTLYVTGLSTRVTERDLEKHFSKEGKVASCF 50 (187)
Q Consensus 19 ~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~ 50 (187)
...+.|+|||..++..-|.+++.. ..+..+.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~ 140 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLV 140 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEE
Confidence 356789999999999999999977 5444433
No 250
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=36.32 E-value=79 Score=21.00 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=19.5
Q ss_pred CCceeEEEEeecCCCCCcceEEEEE-ecCHHHHHHHHHHhC
Q 029810 43 EGKVASCFLVVEPRTRISRGFAFVT-MDGVEDAERCIKYLN 82 (187)
Q Consensus 43 ~G~i~~~~i~~~~~~~~~~g~afV~-f~~~~~a~~ai~~l~ 82 (187)
+-.|..|.|..|-. ...+||. |-+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl~----~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFS----ACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSC----CEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCc----EEEEEEEecCChhhHHHHHHHHH
Confidence 34677888765532 2345666 545544444444444
No 251
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=36.20 E-value=63 Score=26.63 Aligned_cols=54 Identities=24% Similarity=0.307 Sum_probs=35.4
Q ss_pred CCCCcHHHHHHHhh----cCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 28 STRVTERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 28 p~~~t~~~L~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
..+.+.-+|..+|. .+|.|..+.+...+... ....+++.|.+.++|.+++..+.
T Consensus 195 ~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~-~~~~~~~~~~~~~~a~~~~~~~~ 252 (476)
T 3pm9_A 195 KKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPR-AVETAFVGLQSPDDALKLLGIAQ 252 (476)
T ss_dssp SCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCS-EEEEEEEEESCHHHHHHHHHHHH
T ss_pred cCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCc-eeEEEEEEcCCHHHHHHHHHHHH
Confidence 33333345666663 45778888776554322 24568899999999988887663
No 252
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=36.05 E-value=69 Score=19.07 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=38.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC----HHHHHHHHHHh
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 81 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~a~~ai~~l 81 (187)
.+|.|.++....-...|...+...-.|..+.+... .+.+.|.|.. .++..++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35778887776666778999988888888777543 3468888853 34555555533
No 253
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=35.78 E-value=55 Score=26.33 Aligned_cols=58 Identities=16% Similarity=0.023 Sum_probs=38.4
Q ss_pred eEEEcCCCCCC----cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029810 21 TLYVTGLSTRV----TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 88 (187)
Q Consensus 21 ~l~V~~Lp~~~----t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g 88 (187)
--+||||..-. ....+.++..+||.|..+.+. +.-+|...+.+.|+.++.. +...+.+
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~-~~~~f~~ 77 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIK-KGKDFSG 77 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTT-TTTTTBB
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHh-CcHhhCC
Confidence 44588876432 246678888899999888763 2456667788888888752 3334443
No 254
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=34.42 E-value=44 Score=19.95 Aligned_cols=59 Identities=10% Similarity=-0.028 Sum_probs=36.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEec-CHHHHHHHHHHh
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD-GVEDAERCIKYL 81 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~-~~~~a~~ai~~l 81 (187)
....++.|.++....-...|...+.....|..+.+... .+.+.|++. +.++..++|+.+
T Consensus 21 ~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~------~~~~~V~~~~~~~~i~~~i~~~ 80 (85)
T 2k2p_A 21 GAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPA------SRTVVVGGVSDAAHIAEIITAA 80 (85)
T ss_dssp -CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETT------TTEEEEESCCCHHHHHHHHHHT
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECC------CCEEEEEecCCHHHHHHHHHHc
Confidence 33446777777765556778888887777777766433 235666664 345555666543
No 255
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=34.13 E-value=58 Score=17.64 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=35.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC---HHHHHHHHH
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG---VEDAERCIK 79 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~---~~~a~~ai~ 79 (187)
++.|.++....-...|...+.....|..+.+... .+.+.|.|.. .++...+++
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~ 58 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVA 58 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHH
Confidence 5678888776667788888888877877776533 2367778764 344444544
No 256
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=33.95 E-value=56 Score=17.37 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=35.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEec---CHHHHHHHHHHh
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD---GVEDAERCIKYL 81 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~---~~~~a~~ai~~l 81 (187)
++.|.++.-..-...|...+.....|..+.+... .+.+.|+|. +.+...++++.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 4566777666666778888988877777776433 336778875 344455555543
No 257
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=33.48 E-value=1.3e+02 Score=21.45 Aligned_cols=48 Identities=6% Similarity=-0.075 Sum_probs=31.5
Q ss_pred eEEEcCCCCCCcHHH--------HHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCH
Q 029810 21 TLYVTGLSTRVTERD--------LEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGV 71 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~--------L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 71 (187)
.=|+-.||.+++.++ ++++|..+|-|..+.|..+.. ....|.|.|.+.
T Consensus 72 re~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~---~NpHaHim~t~R 127 (185)
T 2ns6_A 72 KEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGG---ENPHCHLMISER 127 (185)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETT---TEEEEEEEECCB
T ss_pred EEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCC---CCceEEEEEeec
Confidence 334557999998765 445566678788777775432 244788887654
No 258
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=33.02 E-value=45 Score=24.84 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=22.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEE
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASC 49 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~ 49 (187)
..+.|+|||..++...|.+++.....+..+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 357899999999999888888754334433
No 259
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=32.81 E-value=62 Score=17.51 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=36.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC---HHHHHHHHHH
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG---VEDAERCIKY 80 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~---~~~a~~ai~~ 80 (187)
.++.|.++....-...|...+.....|..+.+... .+.+.|.|.. .+....+++.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 35678888776666778888988877887776533 3467888864 3334445543
No 260
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.39 E-value=18 Score=21.34 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=8.5
Q ss_pred ceEEEEEecCH
Q 029810 61 RGFAFVTMDGV 71 (187)
Q Consensus 61 ~g~afV~f~~~ 71 (187)
+..|||.|++-
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 45899999863
No 261
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=32.34 E-value=38 Score=28.22 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=28.9
Q ss_pred HHHHHh--hcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 35 DLEKHF--SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 35 ~L~~~f--~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
+|..+| ..+|.|..+.+...+... ....+++.|.+.++|.+|+.
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~-~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPP-VFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCS-EEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCC-eEEEEEEEeCCHHHHHHHHH
Confidence 355666 368899998877654322 23467889998777766443
No 262
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=31.68 E-value=23 Score=26.63 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=24.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEe
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLV 52 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~ 52 (187)
...|+|||..++...|..++.....+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 44789999999999999999876555544443
No 263
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=31.27 E-value=97 Score=19.30 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=37.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEe-ecCCCCCcceEEEEEecC-HHHHHHHHHHhCC
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLV-VEPRTRISRGFAFVTMDG-VEDAERCIKYLNQ 83 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~-~~~~~~~~~g~afV~f~~-~~~a~~ai~~l~g 83 (187)
.|.|.-....+.+..|-++...|+.-.+|..- .+...+...|.-+|++.- .++.++|+..|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRE 89 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 45555444566677788888888853333211 122234456778888863 5567778877754
No 264
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=30.96 E-value=46 Score=21.19 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=33.8
Q ss_pred CCcHHHHHHHhhcCCceeEEEEe-ecCCCCCcceEEEEEec-CHHHHHHHHHHhCCC
Q 029810 30 RVTERDLEKHFSKEGKVASCFLV-VEPRTRISRGFAFVTMD-GVEDAERCIKYLNQS 84 (187)
Q Consensus 30 ~~t~~~L~~~f~~~G~i~~~~i~-~~~~~~~~~g~afV~f~-~~~~a~~ai~~l~g~ 84 (187)
.+.+..|-++...|+.-.+|..- .+...+...|.-+|++. +.++.++|+..|...
T Consensus 32 ~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 32 SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred ccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 45556778888888853333211 12223455678888886 456777888877643
No 265
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=30.28 E-value=44 Score=21.32 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=22.6
Q ss_pred CCcHHHHHHHhh-cCCceeEEEEe----ecCCCCCcceEEEEEecCHHHHH
Q 029810 30 RVTERDLEKHFS-KEGKVASCFLV----VEPRTRISRGFAFVTMDGVEDAE 75 (187)
Q Consensus 30 ~~t~~~L~~~f~-~~G~i~~~~i~----~~~~~~~~~g~afV~f~~~~~a~ 75 (187)
+.+..+|++.++ .|+.-..+.++ .....+++.|||.| |.+.+.|.
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 567777776664 34322222222 23334555667765 55554443
No 266
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=29.56 E-value=1.1e+02 Score=19.56 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=28.9
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcC--------CceeEEEEeec-----CCCCCcce-EEEEEecC-HHHHHHHH
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKE--------GKVASCFLVVE-----PRTRISRG-FAFVTMDG-VEDAERCI 78 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~--------G~i~~~~i~~~-----~~~~~~~g-~afV~f~~-~~~a~~ai 78 (187)
.+|| |.++++++++..+...| |.|..+..+-. .-.....| |.++.|.. ..++.+-+
T Consensus 12 ~~~I--l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~el 82 (110)
T 2j5a_A 12 TVFA--VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNEL 82 (110)
T ss_dssp EEEE--ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHH
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHH
Confidence 4555 45677777765555444 35666543210 11222343 78888977 44444333
No 267
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=29.20 E-value=45 Score=24.77 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=22.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEE
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASC 49 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~ 49 (187)
..+.|+|||..++..-|..++.....+..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 347899999999999999988765444433
No 268
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=29.14 E-value=71 Score=22.62 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 33 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 33 ~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
-++|.++|..|-.+. .| +.+.+..|.+.+.|.+.|+..+
T Consensus 132 l~~i~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~~~ 170 (173)
T 3d53_A 132 KKRIVHFFEHYKDLE---------KG--KWVKVTGWGDKVKAETLIKEGI 170 (173)
T ss_dssp HHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc---------CC--CcEEEccCcCHHHHHHHHHHHH
Confidence 467899999995432 12 3367778899999999887543
No 269
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=28.38 E-value=1.2e+02 Score=19.49 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=33.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEec----CHHHHHHHHHHh
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD----GVEDAERCIKYL 81 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~----~~~~a~~ai~~l 81 (187)
.++.|.++.-..-...|...+...-.|..+.+... .+.+.|+|. +.++..++|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 35667777665555667777777766666665432 235777775 344555555543
No 270
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=27.83 E-value=93 Score=24.90 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=28.9
Q ss_pred eEEEcCCCCC--CcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 21 TLYVTGLSTR--VTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 21 ~l~V~~Lp~~--~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
.-+||||..- .....+.++..+||.|..+.+. +.-+|...+++.++.++.
T Consensus 17 ~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 17 WPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp -----------CCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CCeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 3457777542 2345678888999998877662 245677778888888874
No 271
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=27.81 E-value=78 Score=17.14 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=36.1
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC----HHHHHHHHHHh
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 81 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~a~~ai~~l 81 (187)
++.|.++....-...|...+.....|..+.+... .+.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 5677787665556778888888777777766433 3467888863 44555666544
No 272
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=27.09 E-value=87 Score=17.45 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=36.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC----HHHHHHHHHHh
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 81 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~a~~ai~~l 81 (187)
++.|.++....-...|...+.....|..+.+... .+.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5678888776677788999988877776655322 2357788853 44555666644
No 273
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=27.01 E-value=81 Score=17.05 Aligned_cols=55 Identities=24% Similarity=0.236 Sum_probs=36.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC----HHHHHHHHHH
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKY 80 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~a~~ai~~ 80 (187)
.++.|.++....-...|...+...-.|..+.+-.. .+.+.|.|.. .+....+|..
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778888776566778888888877777776433 3467788863 3445555554
No 274
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=26.81 E-value=96 Score=17.84 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=38.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEec----CHHHHHHHHHHh
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD----GVEDAERCIKYL 81 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~----~~~~a~~ai~~l 81 (187)
.++.|.++....-...|...+.....|..+.+... .+.+.|+|. +.+....+|+.+
T Consensus 11 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46778888876666778999988888887776433 346888885 345555666643
No 275
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=26.61 E-value=1.2e+02 Score=19.00 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=29.1
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcC--------CceeEEEEe------ecCCCCCcce-EEEEEecCHHHHHHHHH
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKE--------GKVASCFLV------VEPRTRISRG-FAFVTMDGVEDAERCIK 79 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~--------G~i~~~~i~------~~~~~~~~~g-~afV~f~~~~~a~~ai~ 79 (187)
.+|| |.++++++++..+...| |.|..+... ..- .....| |.++.|....++.+-++
T Consensus 6 ~~~I--l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I-~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 6 VNIV--LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPI-AKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp EEEE--ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEECHHHHHHHH
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCc-CCCCEEEEEEEEEEeChHHHHHHH
Confidence 3455 45666777666555444 456554322 111 122233 78888976555544444
No 276
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=26.45 E-value=1.2e+02 Score=18.76 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=16.2
Q ss_pred ceEEEEEecCHHHHHHHHH
Q 029810 61 RGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 61 ~g~afV~f~~~~~a~~ai~ 79 (187)
.....|+|.+.+.|.++..
T Consensus 53 ~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 53 KAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp SEEEEEEESSHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHC
Confidence 4579999999999998765
No 277
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=26.39 E-value=1.4e+02 Score=19.41 Aligned_cols=56 Identities=5% Similarity=-0.051 Sum_probs=33.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhh-------cCCceeEEEEeecCCC-CCcc--eE-EEEEecCHHHHHH
Q 029810 21 TLYVTGLSTRVTERDLEKHFS-------KEGKVASCFLVVEPRT-RISR--GF-AFVTMDGVEDAER 76 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~-------~~G~i~~~~i~~~~~~-~~~~--g~-afV~f~~~~~a~~ 76 (187)
.|.+-.|...++++++.++.. +.-.|..+.+-.+... +... .+ .+++|++.++.+.
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~ 89 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDA 89 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHH
Confidence 444557888888776555543 3446777776655431 2222 33 4578888877664
No 278
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=26.11 E-value=57 Score=27.71 Aligned_cols=50 Identities=6% Similarity=0.074 Sum_probs=33.6
Q ss_pred cHHHHHHHhh----cCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 32 TERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 32 t~~~L~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
+.-+|..+|. .+|.|..+.+...+... ....+++.|.+.++|.+|+..+.
T Consensus 286 ~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~-~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 286 AGINYKHIILGSEGTLGIITEAVMKVHAVPQ-AVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp -CCCTHHHHTTCTTSSCEEEEEEEECEECCS-EEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCcchhhhhccCCCCcEEEEEEEEEEEeccc-ceEEEEEEcCCHHHHHHHHHHHH
Confidence 3345666663 45788888776554322 23467899999999988887664
No 279
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=25.80 E-value=74 Score=17.26 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=31.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
++.|.++.-..-...|...+... .|..+.+... .+.+.|.|...+....+++
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLE 55 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHH
Confidence 45666665555556688888777 6777666432 3467788875433334444
No 280
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=25.74 E-value=1.4e+02 Score=19.31 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=31.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEec----CHHHHHHHHHHh
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMD----GVEDAERCIKYL 81 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~----~~~~a~~ai~~l 81 (187)
.+.|.++.-..-...|...+.....|..+.+... .+.+.|+|. +.++..++|+.+
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4556666666556667777766666655554322 235677775 345555555544
No 281
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.67 E-value=60 Score=25.73 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=18.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhhc
Q 029810 21 TLYVTGLSTRVTERDLEKHFSK 42 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~ 42 (187)
...|+|||.+++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999888888764
No 282
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=25.55 E-value=1.3e+02 Score=18.78 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=38.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC----HHHHHHHHHH
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKY 80 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~a~~ai~~ 80 (187)
.++.|.++....-...|...+...-.|..+.+... .+.+.|+|.. .++...+|..
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~ 68 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAA 68 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 45778888887777889999998877887776533 3468888863 3444555553
No 283
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=25.54 E-value=25 Score=21.33 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=8.3
Q ss_pred ceEEEEEecCH
Q 029810 61 RGFAFVTMDGV 71 (187)
Q Consensus 61 ~g~afV~f~~~ 71 (187)
...|||.|++.
T Consensus 54 ~e~ClV~F~D~ 64 (79)
T 2m0o_A 54 REVCLVQFEDD 64 (79)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 45799999863
No 284
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=25.37 E-value=61 Score=22.97 Aligned_cols=41 Identities=5% Similarity=0.070 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 33 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 33 ~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
-++|.++|..|-.+. ....+.+.+..|.+.+.|.+.|+..+
T Consensus 129 l~~i~~fF~~YK~le---------~k~gK~v~~~gw~~~~~A~~~I~~~~ 169 (174)
T 2prd_A 129 KQEIQHFFETYKALE---------AKKGKWVKVTGWRDRKAALEEVRACI 169 (174)
T ss_dssp HHHHHHHHHHTTGGG---------GGGTCCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc---------ccCCCceEECcccCHHHHHHHHHHHH
Confidence 467888999985432 00013366778899999998887543
No 285
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=25.36 E-value=91 Score=22.05 Aligned_cols=39 Identities=8% Similarity=0.107 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 33 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 33 ~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
-++|.++|..|-.+. .+ +.+.+..|.+.+.|.+.|+..+
T Consensus 128 l~~i~~fF~~YK~le---------~g--K~v~~~gw~~~~~A~~~I~~~~ 166 (173)
T 1qez_A 128 KNKIVHFFEHYKELE---------PG--KYVKISGWGSATEAKNRIQLAI 166 (173)
T ss_dssp HHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc---------CC--CceEEccccCHHHHHHHHHHHH
Confidence 467889999995432 12 3366778899999998887554
No 286
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=25.15 E-value=1.4e+02 Score=19.17 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=36.4
Q ss_pred CCCCCCcHHHHHHHh-hcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029810 26 GLSTRVTERDLEKHF-SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 26 ~Lp~~~t~~~L~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
-++..+.-++|..-. ..||.-..+.++.+ .-.|-..+.++..+||+.|+-
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDr 96 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR 96 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhcc
Confidence 356677777776655 47887777766522 367888899999999997764
No 287
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=25.03 E-value=1e+02 Score=19.13 Aligned_cols=63 Identities=8% Similarity=0.015 Sum_probs=35.9
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEe-ecCCCCCcceEEEEEecC-HHHHHHHHHHhCC
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLV-VEPRTRISRGFAFVTMDG-VEDAERCIKYLNQ 83 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~-~~~~~~~~~g~afV~f~~-~~~a~~ai~~l~g 83 (187)
.|.|.-....+.+..|-++...|+.-.+|..- .+...+...|.-+|++.- .++.++|+..|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRK 89 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 44444334455666677777888743332211 112234456778888863 5667778877753
No 288
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=24.98 E-value=1.5e+02 Score=22.54 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=29.7
Q ss_pred HHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 36 LEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 36 L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
|++.|+.+|--.-..+ .|..-|+-||-|-+.+.|+.+++.|-
T Consensus 47 ~~~~~~~~~~~~~~~~-----~ga~gg~~~~~~~~~~~a~~~~~~l~ 88 (291)
T 1o57_A 47 IKQTFEQQGIGTLLTV-----PGAAGGVKYIPKMKQAEAEEFVQTLG 88 (291)
T ss_dssp HHHHHHHTTSEEEEEE-----CSTTCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEe-----cCCCCceEEcccCCHHHHHHHHHHHH
Confidence 4678888874322222 47777889999999998888776553
No 289
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=24.93 E-value=1.4e+02 Score=19.14 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=31.0
Q ss_pred EEEcCCCCCCcHHHHHHHhhc-------CCceeEEEEeecCCCCCcc--eE-EEEEecCHHHHHH
Q 029810 22 LYVTGLSTRVTERDLEKHFSK-------EGKVASCFLVVEPRTRISR--GF-AFVTMDGVEDAER 76 (187)
Q Consensus 22 l~V~~Lp~~~t~~~L~~~f~~-------~G~i~~~~i~~~~~~~~~~--g~-afV~f~~~~~a~~ 76 (187)
|.+-.|...++++++.++... .-.|..+.+-.+.. .... .+ .+++|++.++.++
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 334568888887765555433 33466666655543 2222 23 4577888776654
No 290
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=24.40 E-value=1.5e+02 Score=19.23 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=31.4
Q ss_pred EEEcCCCCCCcHHHHHHHh-------hcCCceeEEEEeecCCCCCcceEE-EEEecCHHHHHH
Q 029810 22 LYVTGLSTRVTERDLEKHF-------SKEGKVASCFLVVEPRTRISRGFA-FVTMDGVEDAER 76 (187)
Q Consensus 22 l~V~~Lp~~~t~~~L~~~f-------~~~G~i~~~~i~~~~~~~~~~g~a-fV~f~~~~~a~~ 76 (187)
|.+-.|...++++++.++. .+.-.|..+.+-.+........++ +++|++.++.+.
T Consensus 24 IVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 24 TVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 3344677777766654444 334467777776654322113344 578888877654
No 291
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=24.36 E-value=89 Score=16.59 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=37.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC----HHHHHHHHH
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIK 79 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~a~~ai~ 79 (187)
.++.|.++....-...|...+.....|..+.+... .+.+.|+|.. .+....+++
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~ 59 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAIN 59 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHH
Confidence 35788888877777889899988877877776433 3467888863 344445554
No 292
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=23.70 E-value=1.6e+02 Score=20.50 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=27.0
Q ss_pred CcHHHHHHHhhcCCcee---EEEEeecCCCCCcceEEEEE
Q 029810 31 VTERDLEKHFSKEGKVA---SCFLVVEPRTRISRGFAFVT 67 (187)
Q Consensus 31 ~t~~~L~~~f~~~G~i~---~~~i~~~~~~~~~~g~afV~ 67 (187)
.++++|.++-.+.|++. .+.|..+..+|..+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58899999999999764 45565554467777777654
No 293
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=23.68 E-value=2.4e+02 Score=23.41 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=34.4
Q ss_pred HHHHHHHhh----cCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029810 33 ERDLEKHFS----KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 33 ~~~L~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
..||..+|. .+|.|..+.+...+... ...++.+.|.+.++|.+++..+-.
T Consensus 211 ~~dL~~~~~Gs~GtlGiIt~~tl~l~p~p~-~~~~~~~~f~~~~~~~~~~~~l~~ 264 (524)
T 2exr_A 211 NSELFFSVLGGLGQFGIITRARVLLQPAPD-MVRWIRVVYTEFDEFTQDAEWLVS 264 (524)
T ss_dssp SHHHHHHHTTCTTSSEEEEEEEEEEEECCS-EEEEEEEEESCHHHHHHHHHHHHT
T ss_pred ChhHHhHhhcCCCccEEEEEEEEEEEEcCC-eeEEEEEEeCCHHHHHHHHHHHHH
Confidence 357777773 46778887776554322 234677899999999888886644
No 294
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=23.64 E-value=88 Score=19.11 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=31.2
Q ss_pred CcHHHHHHHhhcCCc-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 029810 31 VTERDLEKHFSKEGK-VASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEGRYITV 93 (187)
Q Consensus 31 ~t~~~L~~~f~~~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g~~l~v 93 (187)
-|+++|+.++..|-. -..+ -.+|...+.++..+|.+..+..+|+-+.-+|
T Consensus 33 ktedelkkyleefrkesqni-------------kvlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNI-------------KVLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSE-------------EEEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHHHHHhhccCe-------------EEEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 477888888877642 1111 2445556777888887766666776555444
No 295
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=23.44 E-value=1e+02 Score=17.00 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=26.2
Q ss_pred EEEcCCCC-CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 22 LYVTGLST-RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 22 l~V~~Lp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
|+.+..|- -+++++.+.....| .+-.|-.|.+.++|++.|.
T Consensus 8 V~~G~~~GIy~sW~ec~~qV~g~-----------------~ga~yK~F~t~~eA~~~l~ 49 (53)
T 3bsu_A 8 VRRGRKTGVFLTWNECRAQVDRF-----------------PAARFKKFATEDEAWAFVR 49 (53)
T ss_dssp EEESSSCEEESSHHHHHHHHTTC-----------------TTCEEEEESSHHHHHHHHH
T ss_pred EEeCCCCceECCHHHHHHHhcCC-----------------CCCccCCCCCHHHHHHHHH
Confidence 33443333 45666666655443 3357778999999999886
No 296
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=23.44 E-value=1.3e+02 Score=23.84 Aligned_cols=38 Identities=21% Similarity=0.094 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 33 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 33 ~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
...|.++..+||.|..+.+. +.-+|.+.+.+.++.++.
T Consensus 35 ~~~~~~l~~kYG~i~~~~~g---------~~~~vvv~dp~~~~~il~ 72 (487)
T 3n9y_A 35 HLHHVQNFQKYGPIYREKLG---------NVESVYVIDPEDVALLFK 72 (487)
T ss_dssp HHHHHHHHHHHCSEEEEEET---------TEEEEEECCHHHHHHHHH
T ss_pred hHHHHHHHHHcCceeeccCC---------CCCEEEEcCHHHHHHHHH
Confidence 35577888999999888762 235677889999888875
No 297
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=23.35 E-value=40 Score=28.44 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=28.2
Q ss_pred HHHHhh--cCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 36 LEKHFS--KEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 36 L~~~f~--~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
|..+|. .+|.|.++.+...+... ....+++.|.+.++|.+|+.
T Consensus 250 l~~L~~~GtlGiIt~~tl~l~p~p~-~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 250 IDGLFSQSNMGIVTKIGIWLMPNPG-GYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp CGGGGSSSSSEEEEEEEEECEECCS-CEEEEEEEECSTTHHHHHHH
T ss_pred hhcccccCcEEEEEEEEEEEEeCCC-ceEEEEEEcCCHHHHHHHHH
Confidence 344554 47888888776554322 24578889999888766654
No 298
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=23.31 E-value=1.5e+02 Score=18.79 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=37.8
Q ss_pred CCCCCCcHHHHHHHh-hcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029810 26 GLSTRVTERDLEKHF-SKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 26 ~Lp~~~t~~~L~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
-++..+.-++|..-. ..||.-..+.++.+ .-.|-..+.++..+||+.|+-
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhcc
Confidence 456777878876655 57888777777633 377888999999999997753
No 299
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.29 E-value=1.4e+02 Score=18.43 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=36.1
Q ss_pred EcCCCCCCcHHHHHHHhhc-CC-ceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q 029810 24 VTGLSTRVTERDLEKHFSK-EG-KVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKY 80 (187)
Q Consensus 24 V~~Lp~~~t~~~L~~~f~~-~G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~ 80 (187)
+--+...++..+|++.+++ |+ .|..|..+..+. + .--|+|.+....+|......
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHHh
Confidence 3346778899999888875 55 566665554331 2 23599999887777765543
No 300
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=23.19 E-value=98 Score=16.68 Aligned_cols=55 Identities=25% Similarity=0.257 Sum_probs=37.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC----HHHHHHHHHHh
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 81 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~a~~ai~~l 81 (187)
++.|.++....-...|...+.....|..+.+... .+.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 5677788777677788899988877877776533 3467888863 34555566543
No 301
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=28.75 E-value=18 Score=23.12 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=18.3
Q ss_pred ceEEEEEecCHHHHHHHHHHhCC
Q 029810 61 RGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 61 ~g~afV~f~~~~~a~~ai~~l~g 83 (187)
.|-|.|.|.+.++...|+.+|-.
T Consensus 77 egqamirfqnsdeqrlaiqklln 99 (137)
T 2lsl_A 77 EGQAMIRFQNSDEQRLAIQKLLN 99 (137)
Confidence 46799999999888888876643
No 302
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=22.90 E-value=1.7e+02 Score=19.24 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029810 33 ERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQ 83 (187)
Q Consensus 33 ~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g 83 (187)
.+++.+.+..+-+|..|..... ...-++.|.+.+.++.+..+..+.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG----~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAG----AACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEES----SSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeeeC----CCCEEEEEEECCHHHHHHHHHHhcC
Confidence 5678888888999999887643 2344788999999999999988765
No 303
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=22.63 E-value=81 Score=25.01 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=31.1
Q ss_pred EEcCCCC---CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q 029810 23 YVTGLST---RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIK 79 (187)
Q Consensus 23 ~V~~Lp~---~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~ 79 (187)
+||||.. .-....+.++..+||.|..+.+. +.-+|...+++.++.++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA---------WTPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET---------TEEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC---------CeeEEEECCHHHHHHHHH
Confidence 4677653 22345677888999999887763 123455567777777654
No 304
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=22.52 E-value=1.9e+02 Score=21.09 Aligned_cols=45 Identities=7% Similarity=0.106 Sum_probs=30.2
Q ss_pred CCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029810 30 RVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLN 82 (187)
Q Consensus 30 ~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~ 82 (187)
.+|+++|+.+|...-.--. . .....+..|.|.+.+.|+.++..|.
T Consensus 90 ~vtd~ei~~~Y~~~~~~f~--~------~~~~~~~~I~~~~~~~A~~~~~~l~ 134 (252)
T 3rfw_A 90 KIDAAKVKAFYDQNKDKYV--K------PARVQAKHILVATEKEAKDIINELK 134 (252)
T ss_dssp CCCHHHHHHHHHHHGGGSE--E------CCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhHHhcc--c------cceEEEEEEEeCCHHHHHHHHHHHH
Confidence 6899999999975421100 0 0012257788889999999998887
No 305
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=22.40 E-value=1.1e+02 Score=16.83 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=36.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC----HHHHHHHHHHh
Q 029810 21 TLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 81 (187)
Q Consensus 21 ~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~a~~ai~~l 81 (187)
++.|.++....-...|...+...-.|..+.+... .+.+.|.|.. .+....+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5667787766566778888888877877776433 3467888853 34555666543
No 306
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=22.23 E-value=15 Score=22.10 Aligned_cols=67 Identities=9% Similarity=0.038 Sum_probs=38.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029810 17 NPGNTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQSVLEG 88 (187)
Q Consensus 17 ~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~~i~g 88 (187)
.....|.|+-+......+.|..-+...|.-..|. .. +.-.-.-+--|.+.++|++++..|...-|.+
T Consensus 7 ~~~~~vQvGaF~~~~~A~~l~~~L~~~G~~a~i~--~~---~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~ 73 (81)
T 1uta_A 7 ERRWMVQCGSFRGAEQAETVRAQLAFEGFDSKIT--TN---NGWNRVVIGPVKGKENADSTLNRLKMAGHTN 73 (81)
T ss_dssp CCBCCCBCCEESCHHHHHHHHHHHHHHTCCEEEE--EC---SSSEEEEESSCBTTTHHHHHHHHHHHHCCSC
T ss_pred CccEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEE--eC---CcEEEEEECCcCCHHHHHHHHHHHHHcCCCc
Confidence 3446677777766666667777776666433322 11 1111122226788899999888876543433
No 307
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=22.07 E-value=1.1e+02 Score=16.98 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=38.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecC----HHHHHHHHHHh
Q 029810 20 NTLYVTGLSTRVTERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDG----VEDAERCIKYL 81 (187)
Q Consensus 20 ~~l~V~~Lp~~~t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~----~~~a~~ai~~l 81 (187)
.++.|.++....-...|...+.....|..+.+... .+.+.|.|.. .++...+|+.+
T Consensus 10 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 10 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46778888887777889999988877777666433 3467888853 35555666644
No 308
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=21.76 E-value=1.1e+02 Score=22.15 Aligned_cols=46 Identities=4% Similarity=-0.002 Sum_probs=32.3
Q ss_pred cHHHHHHHhhcCCceeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q 029810 32 TERDLEKHFSKEGKVASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYLNQS 84 (187)
Q Consensus 32 t~~~L~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l~g~ 84 (187)
.+++|.+.+..|.++.= ..+.-+-.-||++.+.++....+..|.|.
T Consensus 66 ~~~~I~~Ei~aYnpLiP-------~~~~l~ATl~IE~~d~~er~~~L~~L~Gi 111 (194)
T 3fjv_A 66 DEDGIQAELDAYLPLVP-------DGSNLKATLQIEYENETQRRAALARLVGI 111 (194)
T ss_dssp SHHHHHHHHHHHGGGCC-------CSSEEEEEEEECCSSHHHHHHHHHHTTTG
T ss_pred CHHHHHHHHHHhcccCC-------CCCcEEEEEEEEcCCHHHHHHHHHHhcCc
Confidence 45667777777765431 11222446899999999999999999874
No 309
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.71 E-value=13 Score=21.62 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=8.4
Q ss_pred ceEEEEEecCH
Q 029810 61 RGFAFVTMDGV 71 (187)
Q Consensus 61 ~g~afV~f~~~ 71 (187)
+..|||.|++.
T Consensus 35 ~~~ClV~FeD~ 45 (63)
T 2e5q_A 35 KQSCLVTFEDN 45 (63)
T ss_dssp TSEEEEEETTS
T ss_pred CCEEEEEEccC
Confidence 55899999763
No 310
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.52 E-value=37 Score=19.98 Aligned_cols=10 Identities=10% Similarity=0.444 Sum_probs=8.3
Q ss_pred ceEEEEEecC
Q 029810 61 RGFAFVTMDG 70 (187)
Q Consensus 61 ~g~afV~f~~ 70 (187)
.+.|+|.|++
T Consensus 41 ~gtC~V~F~D 50 (66)
T 2eqj_A 41 KQSCFIIFED 50 (66)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 5689999986
No 311
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=21.31 E-value=1.1e+02 Score=19.38 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=31.7
Q ss_pred CCCCCcHHHHHHHh-hcCC-----ce-eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q 029810 27 LSTRVTERDLEKHF-SKEG-----KV-ASCFLVVEPRTRISRGFAFVTMDGVEDAERCIKYL 81 (187)
Q Consensus 27 Lp~~~t~~~L~~~f-~~~G-----~i-~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ai~~l 81 (187)
+|..++-.+|.+.. .+++ .| ..+.|.+..+.| -||.+.+.++.+.|++.+
T Consensus 29 V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdG-----D~Vtl~sddDl~~A~e~~ 85 (98)
T 1q1o_A 29 VEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDG-----DFVVLGSDEDWNVAKEML 85 (98)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSS-----CEEEECSHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCC-----CEEEEcCHHHHHHHHHHH
Confidence 57788877765443 2333 12 122333333333 799999999999999976
No 312
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.02 E-value=1.6e+02 Score=18.23 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=19.6
Q ss_pred ceeEEEEeecCCCCCcceEEEEEecC
Q 029810 45 KVASCFLVVEPRTRISRGFAFVTMDG 70 (187)
Q Consensus 45 ~i~~~~i~~~~~~~~~~g~afV~f~~ 70 (187)
+|..|.|..-...++-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57777776665567778999999975
No 313
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=20.70 E-value=1.3e+02 Score=17.78 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=23.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCce
Q 029810 15 TGNPGNTLYVTGLSTRVTERDLEKHFSKEGKV 46 (187)
Q Consensus 15 ~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~G~i 46 (187)
..-.+.+++|.++... +.++|++++..+|-.
T Consensus 6 ~~f~g~~~~i~g~~~~-~~~~l~~~i~~~GG~ 36 (92)
T 4id3_A 6 KIFKNCVIYINGYTKP-GRLQLHEMIVLHGGK 36 (92)
T ss_dssp CTTTTCEEEECSCCSS-CHHHHHHHHHHTTCE
T ss_pred cccCCEEEEEeCCCCc-CHHHHHHHHHHCCCE
Confidence 4456789999886543 578899999999854
No 314
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=20.53 E-value=1.1e+02 Score=19.28 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=16.4
Q ss_pred CcHHHHHHHhhcCCceeEEEE
Q 029810 31 VTERDLEKHFSKEGKVASCFL 51 (187)
Q Consensus 31 ~t~~~L~~~f~~~G~i~~~~i 51 (187)
.+++.|.++|+.+|.|..-.+
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~M 24 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSM 24 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEE
T ss_pred hHHHHHHHHHhccCCceEeec
Confidence 467779999999999886443
No 315
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=20.52 E-value=83 Score=19.51 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=23.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcC
Q 029810 14 ETGNPGNTLYVTGLSTRVTERDLEKHFSKE 43 (187)
Q Consensus 14 ~~~~~~~~l~V~~Lp~~~t~~~L~~~f~~~ 43 (187)
...+....|.|.+.+..++.++..+++..|
T Consensus 14 s~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 14 TTLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp --CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred cccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 345666889999999999999988888877
No 316
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=20.01 E-value=81 Score=19.62 Aligned_cols=7 Identities=43% Similarity=1.141 Sum_probs=5.9
Q ss_pred ceEEEEE
Q 029810 61 RGFAFVT 67 (187)
Q Consensus 61 ~g~afV~ 67 (187)
+||+||+
T Consensus 20 KGfGFI~ 26 (90)
T 3ulj_A 20 MGFGFIS 26 (90)
T ss_dssp TTEEEEE
T ss_pred CCeEEeE
Confidence 7899996
Done!