BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029811
         (187 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At5g01750
 pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
           From Arabidopsis Thaliana At5g01750
          Length = 217

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 94/138 (68%), Gaps = 1/138 (0%)

Query: 26  IIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGN 85
           ++ P+YC PYP+D A+VRK  +L DG+F +TD+N N++FKVKE  F LHDKR LLD +G 
Sbjct: 27  VVDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGT 86

Query: 86  PVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVIL 145
           PVVT+ EK  S H++  VFRG STD +DLL+TV  SS LQLKT L+VF     +++    
Sbjct: 87  PVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSXLQLKTKLDVFLGHNKDEKRCDF 146

Query: 146 RSKAAG-QNDPVLFMQES 162
           R K +  +   V++  ES
Sbjct: 147 RVKGSWLERSCVVYAGES 164


>pdb|3NYI|A Chain A, The Crystal Structure Of A Fat Acid (Stearic Acid)-Binding
           Protein From Eubacterium Ventriosum Atcc 27560.
 pdb|3NYI|B Chain B, The Crystal Structure Of A Fat Acid (Stearic Acid)-Binding
           Protein From Eubacterium Ventriosum Atcc 27560
          Length = 297

 Score = 28.5 bits (62), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 24  VSIIGPQYCLPYPVDLAVVRKFMTL 48
           + I+   +  PYP+ L V+RK+ TL
Sbjct: 272 IGIVSAVHTGPYPIGLGVIRKYETL 296


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,636,515
Number of Sequences: 62578
Number of extensions: 167256
Number of successful extensions: 338
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 2
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)