Query 029811
Match_columns 187
No_of_seqs 151 out of 494
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 2.1E-34 7E-39 237.2 15.7 174 3-179 2-178 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.8 1.9E-07 6.6E-12 76.0 14.2 111 34-151 60-175 (217)
3 2v2f_A Penicillin binding prot 49.6 8.9 0.0003 20.0 1.7 16 76-91 6-21 (26)
4 4h3o_A Lectin; cadmium, plant 44.4 35 0.0012 23.6 4.7 16 74-89 60-75 (105)
5 2v8f_C MDIA1, profilin IIA; al 35.3 23 0.00078 18.9 1.8 13 8-20 11-23 (26)
6 1hzt_A Isopentenyl diphosphate 32.5 44 0.0015 24.9 3.9 56 52-107 5-69 (190)
7 2lkw_A Membrane fusion protein 32.5 19 0.00064 18.9 1.2 11 6-16 6-16 (26)
8 3qoe_A Heterocyst differentiat 30.7 12 0.00042 30.8 0.4 23 165-187 183-205 (302)
9 4he6_A Peptidase family U32; u 30.6 52 0.0018 22.0 3.6 33 57-90 16-50 (89)
10 2ln7_A LPXTG-SITE transpeptida 29.5 15 0.00052 27.3 0.7 41 50-90 79-119 (147)
11 2vnl_A Bifunctional tail prote 27.3 64 0.0022 24.5 3.8 42 44-91 62-103 (151)
12 2z4i_A Copper homeostasis prot 22.6 1.6E+02 0.0054 23.8 5.7 11 77-87 97-107 (233)
13 1q27_A Putative nudix hydrolas 22.3 37 0.0013 24.6 1.7 51 51-102 7-65 (171)
14 2heq_A YORP protein; SH3-like, 22.0 1.1E+02 0.0038 20.4 3.8 29 40-69 37-65 (84)
15 3osv_A Flagellar basal-BODY RO 21.2 1.1E+02 0.0037 22.1 4.1 16 52-67 40-55 (138)
16 2wzo_A Transforming growth fac 20.9 1.8E+02 0.0063 21.2 5.4 45 29-91 25-72 (146)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=2.1e-34 Score=237.19 Aligned_cols=174 Identities=43% Similarity=0.729 Sum_probs=119.1
Q ss_pred CCCccC--CCCCCCCCCCCCCCceEEecCccccCcCEEEEEEeeeceecCCCeEEEcCCCCEEEEEEeecCCCCCeEEEE
Q 029811 3 QQPVNV--PAPTPPPNPAMYSNPVSIIGPQYCLPYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLL 80 (187)
Q Consensus 3 ~~~~~~--~~~~~~~~~~~~~~pv~vV~~~~~a~~~~~L~vk~K~~sls~~~F~I~D~~G~~vf~V~gk~~s~~~~~~l~ 80 (187)
|||-.- |.-+.||.+.++.+|++||+++||++++++|+||||++++++++|+|+|++|+++|+|+|+.+++++++.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~ 81 (217)
T 1zxu_A 2 EQPYVYAYPQGSGPSGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLL 81 (217)
T ss_dssp ----------------------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEE
T ss_pred CCceEEeCCCCCCCCCCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEE
Confidence 455443 445678888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEeccccccccEEEEECCCCCCCCeEEEEEecccccCcceEEEEEecCCCCceEEEEEeecC-CCCceEEe
Q 029811 81 DPAGNPVVTITEKLFSAHEKHSVFRGASTDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAG-QNDPVLFM 159 (187)
Q Consensus 81 D~~G~~L~~Ir~K~lsl~~~w~v~~g~~~~~~~~lftvk~~~~~~~k~k~~V~~~~~~~g~~~~~~i~g~~-~~~~~i~~ 159 (187)
|++|++|++|++|.++++++|++|.++..+.++++|+||+++...++++++|++.++.+++..+|+|+|+| .++|.|+.
T Consensus 82 D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~ 161 (217)
T 1zxu_A 82 DGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYA 161 (217)
T ss_dssp CTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEE
T ss_pred CCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEE
Confidence 99999999999999999999999998744445689999976533379999999988666667889999999 78899997
Q ss_pred cCCCceeeeeeecccccccc
Q 029811 160 QESPTQLLPRCTKRKPLEAT 179 (187)
Q Consensus 160 ~~s~~~~v~~i~~rk~~~~~ 179 (187)
++ .+.+||+| +|| ++.+
T Consensus 162 ~~-~~~~Va~I-~kk-~~~~ 178 (217)
T 1zxu_A 162 GE-SDAIVAQM-HRK-HTVQ 178 (217)
T ss_dssp TT-TCCEEEEE-EEC-----
T ss_pred CC-CCEEEEEE-Eee-eecc
Confidence 65 36899999 666 6644
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=98.77 E-value=1.9e-07 Score=75.99 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=74.4
Q ss_pred CcCEEEEEEeeeceecCCCeEEEcCCCCEEEEEEeecCCCCCeEEEECCCCC----eEEEEEecc-ccccccEEEEECCC
Q 029811 34 PYPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGN----PVVTITEKL-FSAHEKHSVFRGAS 108 (187)
Q Consensus 34 ~~~~~L~vk~K~~sls~~~F~I~D~~G~~vf~V~gk~~s~~~~~~l~D~~G~----~L~~Ir~K~-lsl~~~w~v~~g~~ 108 (187)
.+...|.++++.+++++ .+.|+|.+|+++++++.+.++++.+..++++.+. +|++|+++. +++.+.|+|+.++.
T Consensus 60 ~G~~vf~V~~~~~~~~~-~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~ 138 (217)
T 1zxu_A 60 NGNLLFKVKEPVFGLHD-KRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHN 138 (217)
T ss_dssp TSCEEEEEECSSTTCCS-EEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTC
T ss_pred CCCEEEEEEccccCCCC-EEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCC
Confidence 66789999999888877 9999999999999999999999999999998765 799999873 56889999998753
Q ss_pred CCCCCeEEEEEecccccCcceEEEEEecCCCCceEEEEEeecC
Q 029811 109 TDAKDLLFTVGASSVLQLKTTLNVFWQVIPNKRFVILRSKAAG 151 (187)
Q Consensus 109 ~~~~~~lftvk~~~~~~~k~k~~V~~~~~~~g~~~~~~i~g~~ 151 (187)
...+...++|+ -. ++..+++|.-.. ++....+|+..|
T Consensus 139 ~~~~~~~~~I~-G~--~~~~~f~I~~~~---~~~~Va~I~kk~ 175 (217)
T 1zxu_A 139 KDEKRCDFRVK-GS--WLERSCVVYAGE---SDAIVAQMHRKH 175 (217)
T ss_dssp CC-CCCSEEEE-SC--TTTTCCEEEETT---TCCEEEEEEEC-
T ss_pred CCCCceEEEEE-Ee--EeCCEEEEEECC---CCEEEEEEEeee
Confidence 33345567876 33 345777775431 134555665554
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=49.65 E-value=8.9 Score=20.05 Aligned_cols=16 Identities=6% Similarity=0.208 Sum_probs=11.6
Q ss_pred eEEEECCCCCeEEEEE
Q 029811 76 KRTLLDPAGNPVVTIT 91 (187)
Q Consensus 76 ~~~l~D~~G~~L~~Ir 91 (187)
.-.|+|.+|+.+.+|.
T Consensus 6 ss~IYD~~g~~i~~lg 21 (26)
T 2v2f_A 6 SSKIYDNKNQLIADLG 21 (26)
T ss_pred CCEEEeCCCCEeeecc
Confidence 3567888888887763
No 4
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=44.41 E-value=35 Score=23.59 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=8.8
Q ss_pred CCeEEEECCCCCeEEE
Q 029811 74 HDKRTLLDPAGNPVVT 89 (187)
Q Consensus 74 ~~~~~l~D~~G~~L~~ 89 (187)
.+.++|+|.+|.++..
T Consensus 60 dGnLvL~d~~~~~vWs 75 (105)
T 4h3o_A 60 DGNFVVYDSSGRSLWA 75 (105)
T ss_dssp TSCEEEECTTCCEEEE
T ss_pred CccEEEECCCcEEEEE
Confidence 3455566666655543
No 5
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=35.28 E-value=23 Score=18.89 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCC
Q 029811 8 VPAPTPPPNPAMY 20 (187)
Q Consensus 8 ~~~~~~~~~~~~~ 20 (187)
.++|.|||-|-++
T Consensus 11 ~giPpPpplPg~~ 23 (26)
T 2v8f_C 11 ASIPPPPPLPGXX 23 (26)
T ss_pred CCCCCCCCCCCcc
Confidence 4555555555544
No 6
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=32.48 E-value=44 Score=24.85 Aligned_cols=56 Identities=11% Similarity=-0.044 Sum_probs=19.4
Q ss_pred CeEEEcCCCCEEEEEEeecCC-------CCCeEEEECCCCCeEEEEEecc-ccccccEEE-EECC
Q 029811 52 SFTVTDINDNIMFKVKEKHFS-------LHDKRTLLDPAGNPVVTITEKL-FSAHEKHSV-FRGA 107 (187)
Q Consensus 52 ~F~I~D~~G~~vf~V~gk~~s-------~~~~~~l~D~~G~~L~~Ir~K~-lsl~~~w~v-~~g~ 107 (187)
-+.|+|++|+++..+...... ..-...+.+.+|+.|+.-|... -.+...|.. =-|.
T Consensus 5 ~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ 69 (190)
T 1hzt_A 5 HVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGH 69 (190)
T ss_dssp --------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEEC
T ss_pred EEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCccccc
Confidence 578899999988876655432 1224567787887766544321 234678887 4443
No 7
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=32.46 E-value=19 Score=18.94 Aligned_cols=11 Identities=55% Similarity=1.044 Sum_probs=6.5
Q ss_pred ccCCCCCCCCC
Q 029811 6 VNVPAPTPPPN 16 (187)
Q Consensus 6 ~~~~~~~~~~~ 16 (187)
--|..|.||||
T Consensus 6 sivqppapppn 16 (26)
T 2lkw_A 6 SIVQPPAPPPN 16 (26)
T ss_pred ccccCCCcCCC
Confidence 34556666766
No 8
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=30.66 E-value=12 Score=30.77 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=18.6
Q ss_pred eeeeeeecccccccccceeccCC
Q 029811 165 QLLPRCTKRKPLEATSLTRIDSP 187 (187)
Q Consensus 165 ~~v~~i~~rk~~~~~~~~~~~~~ 187 (187)
+.+|.-.+|+++-++..||||||
T Consensus 183 eAlaEHIkRRL~ysgTVtridsp 205 (302)
T 3qoe_A 183 EALAEHIKRRLLYSGTVTRIDSP 205 (302)
T ss_dssp HHHHHHHHHTTTTTTSCCCBCCS
T ss_pred HHHHHHHHHHHhhccceEeecCC
Confidence 44555449999999999999998
No 9
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=30.62 E-value=52 Score=22.00 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=22.7
Q ss_pred cCC-CCEEEEEEeecCCCCCeEEEECCCC-CeEEEE
Q 029811 57 DIN-DNIMFKVKEKHFSLHDKRTLLDPAG-NPVVTI 90 (187)
Q Consensus 57 D~~-G~~vf~V~gk~~s~~~~~~l~D~~G-~~L~~I 90 (187)
|.+ |...+.++++ |+.++.++|+-+.| +.-++|
T Consensus 16 ~~~~g~~~ie~rN~-f~~GD~iEi~~P~g~~~~~~v 50 (89)
T 4he6_A 16 DPETGIATVQQRNH-FRPGDEVEFFGPEIENFTQVI 50 (89)
T ss_dssp ETTTTEEEEEESSC-BCTTCEEEEESTTSCCEEEEC
T ss_pred eCCCCEEEEEEcCC-cCCCCEEEEEcCCCCcEEEEe
Confidence 443 6566666666 67899999999888 444554
No 10
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=29.47 E-value=15 Score=27.32 Aligned_cols=41 Identities=15% Similarity=0.341 Sum_probs=23.8
Q ss_pred CCCeEEEcCCCCEEEEEEeecCCCCCeEEEECCCCCeEEEE
Q 029811 50 DGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNPVVTI 90 (187)
Q Consensus 50 ~~~F~I~D~~G~~vf~V~gk~~s~~~~~~l~D~~G~~L~~I 90 (187)
||.+.|.+.++...|+|+....--.....+....|+++++|
T Consensus 79 GD~i~v~~~~~~~~Y~V~~~~vv~p~d~~v~~~~~~~~ltL 119 (147)
T 2ln7_A 79 KDTLVLEYDNKTYTYEIQKIWITHADDRTVIIKKEEPILTL 119 (147)
T ss_dssp TCEEEEEETTEEEEEEEEEEEEEETTCGGGSSCCSSCEEEE
T ss_pred CCEEEEEECCcEEEEEEEeEEEECCCcceeecCCCCcEEEE
Confidence 46888888888888888875321122222333445554444
No 11
>2vnl_A Bifunctional tail protein, PIIGCN4; chimera, hydrolase, late protein, viral protein, phage P22 tailspike protein, mutant Y108WDEL; 1.80A {Enterobacteria phage P22} PDB: 2vky_B
Probab=27.26 E-value=64 Score=24.50 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=24.0
Q ss_pred eeceecCCCeEEEcCCCCEEEEEEeecCCCCCeEEEECCCCCeEEEEE
Q 029811 44 KFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNPVVTIT 91 (187)
Q Consensus 44 K~~sls~~~F~I~D~~G~~vf~V~gk~~s~~~~~~l~D~~G~~L~~Ir 91 (187)
....+...+|-|+ +|+++-.|.. -++...++|..|..+|.+-
T Consensus 62 qPivin~ag~fv~--ng~l~~~vt~----~ghsmavYd~~Gaq~f~iP 103 (151)
T 2vnl_A 62 QPLIINAAGKIVY--NGQLVKIVTV----QGHSMAIYDANGSQVDYIA 103 (151)
T ss_dssp SSEEECTTSCEEE--TTEECCEECC----SSCEEEEECTTSCEEEEES
T ss_pred cceeeecCCceee--CCEEEEEecc----CCCcceEEecCCCceeeec
Confidence 3344444455552 4555333322 3566788888888888764
No 12
>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta barrel, OB-fold, 3D domain swapping, signaling protein activator; HET: P6G; 2.60A {Escherichia coli} PDB: 2z4h_A*
Probab=22.59 E-value=1.6e+02 Score=23.79 Aligned_cols=11 Identities=45% Similarity=0.890 Sum_probs=7.3
Q ss_pred EEEECCCCCeE
Q 029811 77 RTLLDPAGNPV 87 (187)
Q Consensus 77 ~~l~D~~G~~L 87 (187)
+.+.|.+|+++
T Consensus 97 L~mLD~~G~~i 107 (233)
T 2z4i_A 97 LEMLDREGNPI 107 (233)
T ss_dssp EEEECTTSCBC
T ss_pred EEEECCCCCcC
Confidence 66666666666
No 13
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=22.27 E-value=37 Score=24.61 Aligned_cols=51 Identities=6% Similarity=-0.046 Sum_probs=31.1
Q ss_pred CCeEEEcCCCCEEEEEEeecC------CCCCeEEEECCCCCeEEEEEecc-c-cccccEE
Q 029811 51 GSFTVTDINDNIMFKVKEKHF------SLHDKRTLLDPAGNPVVTITEKL-F-SAHEKHS 102 (187)
Q Consensus 51 ~~F~I~D~~G~~vf~V~gk~~------s~~~~~~l~D~~G~~L~~Ir~K~-l-sl~~~w~ 102 (187)
.-+.|+|.+|+++..+..... ...-...+.|.+|+.|+ ++|.. - .+.+.|.
T Consensus 7 E~~~~~d~~~~~~g~~~r~~~~l~~~~~~~v~v~i~~~~~~vLl-~~r~~~~~~~~g~w~ 65 (171)
T 1q27_A 7 ERLDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWI-PRRSPSKSLFPNALD 65 (171)
T ss_dssp SEEEEESSSSCEEEEEESSCTTSCTTSCEEEEEEEEETTTEEEE-CCSCCSSSCCCCSCC
T ss_pred eeeeeecCCCCEeceEEhhhhccccccceEEEEEEECCCCeEEE-EEecCCCCCCCCccc
Confidence 468899999999988766543 11234456777775554 44422 1 1356676
No 14
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=21.98 E-value=1.1e+02 Score=20.40 Aligned_cols=29 Identities=10% Similarity=0.321 Sum_probs=22.7
Q ss_pred EEEeeeceecCCCeEEEcCCCCEEEEEEee
Q 029811 40 AVVRKFMTLADGSFTVTDINDNIMFKVKEK 69 (187)
Q Consensus 40 ~vk~K~~sls~~~F~I~D~~G~~vf~V~gk 69 (187)
.|-+++-|+.= ||.|.|++|.+-|.=+..
T Consensus 37 kIie~~hSa~Y-DYaVsdetGdIt~fKEhE 65 (84)
T 2heq_A 37 KIIEHLHSATY-DYAVSDETGDITYFKEHE 65 (84)
T ss_dssp EEEEECCCSSC-SEEEEETTSCEEEECGGG
T ss_pred chhhhhhhhee-eeeeecccCceeeeeccc
Confidence 44567888877 999999999998875543
No 15
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=21.20 E-value=1.1e+02 Score=22.13 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=9.1
Q ss_pred CeEEEcCCCCEEEEEE
Q 029811 52 SFTVTDINDNIMFKVK 67 (187)
Q Consensus 52 ~F~I~D~~G~~vf~V~ 67 (187)
..+|+|++|++|.+++
T Consensus 40 ~v~I~d~~G~~V~t~~ 55 (138)
T 3osv_A 40 WVNVYDDKGTVVNRIN 55 (138)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEE
Confidence 3455666666666554
No 16
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=20.85 E-value=1.8e+02 Score=21.23 Aligned_cols=45 Identities=18% Similarity=0.386 Sum_probs=25.9
Q ss_pred CccccC---cCEEEEEEeeeceecCCCeEEEcCCCCEEEEEEeecCCCCCeEEEECCCCCeEEEEE
Q 029811 29 PQYCLP---YPVDLAVVRKFMTLADGSFTVTDINDNIMFKVKEKHFSLHDKRTLLDPAGNPVVTIT 91 (187)
Q Consensus 29 ~~~~a~---~~~~L~vk~K~~sls~~~F~I~D~~G~~vf~V~gk~~s~~~~~~l~D~~G~~L~~Ir 91 (187)
+.|+.. +|+-|...+..+|..+ .+....|+. +|.|..+.|+|.|.
T Consensus 25 ~~fh~~~~IyPvGy~~~R~y~s~~d-------p~~~~~Y~c-----------~I~d~~~~P~F~V~ 72 (146)
T 2wzo_A 25 PGFHDESAIYPVGYCSTRIYASMKC-------PDQKCLYTC-----------QIKDGGVQPQFEIV 72 (146)
T ss_dssp GGGBCSSCBCCEEEEEEEEEECSSC-------TTSEEEEEE-----------EEEECSSSEEEEEE
T ss_pred CCccCCCceeCCCEEEEEEEecccC-------CCCeEEEEE-----------EEEECCCcceeEEE
Confidence 345542 4788888888777543 333333332 44455667777765
Done!