BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029812
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
D R L+V +P+ L +LF YG IE K + + F+KF+ S+A+
Sbjct: 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQ 99
Query: 78 AKRKLDEFVFLGNRLKVSYAS 98
A L+ F L RLKV+ A+
Sbjct: 100 AIAGLNGFNILNKRLKVALAA 120
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81
L VRN+ +DL KLF+ YG + E P+D+ P F+ F +A A +
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKP-KGFAFVTFMFPEHAVKAYAE 69
Query: 82 LDEFVFLGNRLKV 94
+D VF G L V
Sbjct: 70 VDGQVFQGRMLHV 82
>pdb|2E44|A Chain A, Solution Structure Of Rna Binding Domain In Insulin-Like
Growth Factor 2 Mrna Binding Protein 3
Length = 96
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR 80
R L +RN+P + L L YG +E C+ ++ D T V + + AR A
Sbjct: 16 RKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT---DSETAVVNVTYSSKDQARQALD 72
Query: 81 KLDEFVFLGNRLKVSY 96
KL+ F LKV+Y
Sbjct: 73 KLNGFQLENFTLKVAY 88
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With
The Au-Rich Element
Length = 174
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%)
Query: 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNAR 76
D LIV +P D+ LF + GDIE CK + + F+ + ++A
Sbjct: 1 MDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 60
Query: 77 FAKRKLDEFVFLGNRLKVSYA 97
A L+ +KVSYA
Sbjct: 61 KAINTLNGLKLQTKTIKVSYA 81
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain
(Rbd1) Of Hu Antigen C (Huc)
Length = 89
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
D LIV +P D+ LF + GDIE CK + + F+ + ++A
Sbjct: 2 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 61
Query: 78 AKRKLDEFVFLGNRLKVSYA 97
A L+ +KVSYA
Sbjct: 62 AINTLNGLKLQTKTIKVSYA 81
>pdb|2LA4|A Chain A, Nmr Structure Of The C-Terminal Rrm Domain Of Poly(U)
Binding 1
Length = 101
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 25 VRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84
+ N+P DL+ LF +G I + K + C FIK+ A L
Sbjct: 32 IGNIPHFATEADLIPLFQNFGFILDFKHYPEKGC------CFIKYDTHEQAAVCIVALAN 85
Query: 85 FVFLGNRLKVSYASQ 99
F F G L+ + +
Sbjct: 86 FPFQGRNLRTGWGKE 100
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P +L LF G I C+ M F+ F +++ A + L
Sbjct: 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65
Query: 83 DEFVFLGNRLKVSYAS-QFESLADT 106
+ RLKVSYA ES+ DT
Sbjct: 66 NGITVRNKRLKVSYARPGGESIKDT 90
>pdb|2DNK|A Chain A, Solution Structure Of Rna Binding Domain In Bruno-Like 4
Rna Binding Protein
Length = 105
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 35 DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
DD+ +LF +G+IEEC + D + F+K+ + A+ A L
Sbjct: 30 DDVRRLFEAFGNIEECTILRGPDGNS-KGCAFVKYSSHAEAQAAINAL 76
>pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P D+L LF++ G++E K + + F+ + +A A L
Sbjct: 7 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 66
Query: 83 DEFVFLGNRLKVSYA 97
+ +KVSYA
Sbjct: 67 NGLRLQSKTIKVSYA 81
>pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P D+L LF++ G++E K + + F+ + +A A L
Sbjct: 22 LIVNYLPQNXTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 83 DEFVFLGNRLKVSYA 97
+ +KVSYA
Sbjct: 82 NGLRLQSKTIKVSYA 96
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs
Of Human Antigen R
Length = 177
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P D+L LF++ G++E K + + F+ + +A A L
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 64
Query: 83 DEFVFLGNRLKVSYA 97
+ +KVSYA
Sbjct: 65 NGLRLQSKTIKVSYA 79
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of
Hur Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of
Hur Complexed With Rna
Length = 177
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P D+L LF++ G++E K + + F+ + +A A L
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 64
Query: 83 DEFVFLGNRLKVSYA 97
+ +KVSYA
Sbjct: 65 NGLRLQSKTIKVSYA 79
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 9 PGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIK 68
PG + +T + L V N+P +++ KLF YG E +D FI+
Sbjct: 14 PGEKTFT---QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV--FIHKD----KGFGFIR 64
Query: 69 FRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESL 103
+ A AK +LD G +L+V +A SL
Sbjct: 65 LETRTLAEIAKVELDNMPLRGKQLRVRFACHSASL 99
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%)
Query: 25 VRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84
V N+P +DL ++F+ YG + + M +D V FI F +A+ R ++
Sbjct: 21 VSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN 80
Query: 85 FVFLGNRLKVSYA 97
G +K S A
Sbjct: 81 KQLFGRVIKASIA 93
>pdb|3U1L|A Chain A, Structure Of The Mrna Splicing Complex Component Cwc2
pdb|3U1M|A Chain A, Structure Of The Mrna Splicing Complex Component Cwc2
Length = 240
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 40 LFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88
+F+ GDI+ + +++++C F+KF+ +NA FAK + L
Sbjct: 163 VFSRLGDIDRIRYVESKNCG------FVKFKYQANAEFAKEAMSNQTLL 205
>pdb|3TP2|A Chain A, Crystal Structure Of The Splicing Factor Cwc2 From Yeast
pdb|3TP2|B Chain B, Crystal Structure Of The Splicing Factor Cwc2 From Yeast
Length = 229
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 40 LFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88
+F+ GDI+ + +++++C F+KF+ +NA FAK + L
Sbjct: 165 VFSRLGDIDRIRYVESKNCG------FVKFKYQANAEFAKEAMSNQTLL 207
>pdb|2DNO|A Chain A, Solution Structure Of Rna Binding Domain In
Trinucleotide Repeat Containing 4 Variant
Length = 102
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFA 78
E R L V + +D+ K+F +G I+EC + D F+KF+ + A+ A
Sbjct: 11 EDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTS-KGCAFVKFQTHAEAQAA 69
Query: 79 KRKL 82
L
Sbjct: 70 INTL 73
>pdb|2SXL|A Chain A, Sex-Lethal Rbd1, Nmr, Minimized Average Structure
Length = 88
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P +L LF G I C+ M F+ F +++ A + L
Sbjct: 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65
Query: 83 DEFVFLGNRLKVSYA 97
+ RLKVSYA
Sbjct: 66 NGITVRNKRLKVSYA 80
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P +L LF G I C+ F+ F +++ A + L
Sbjct: 17 LIVNYLPQDXTDRELYALFRAIGPINTCRIXRDYKTGYSFGYAFVDFTSEXDSQRAIKVL 76
Query: 83 DEFVFLGNRLKVSYAS-QFESLADT 106
+ RLKVSYA ES+ DT
Sbjct: 77 NGITVRNKRLKVSYARPGGESIKDT 101
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 3 RYKDEP--PGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPM 53
++ D P PG ++Y D++R+L N+ LG D+ +K+ ++EE + +
Sbjct: 396 KFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESI 448
>pdb|3IC6|A Chain A, Crystal Structure Of Putative Methylase Family Protein
From Neisseria Gonorrhoeae
Length = 223
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 101 ESLADTKDK--LETRRKEVLARLNSGRSKVPNIHSSVDLGE 139
E+LADT L +RR+E+ A L + R VP + + + GE
Sbjct: 101 EALADTTIACALTSRRREITAPLQTPRDLVPELLQAANRGE 141
>pdb|1I9T|A Chain A, Crystal Structure Of The Oxidized Rna Triphosphatase
Domain Of Mouse Mrna Capping Enzyme
Length = 210
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 29 PSLGCGDDLLKLFATYGDIEECKP 52
P + GD L +LF YGDIEE P
Sbjct: 162 PGIYKGDYLKELFRRYGDIEEAPP 185
>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of
Mouse Mrna Capping Enzyme
Length = 210
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 29 PSLGCGDDLLKLFATYGDIEECKP 52
P + GD L +LF YGDIEE P
Sbjct: 162 PGIYKGDYLKELFRRYGDIEEAPP 185
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The
C-Fos Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The
Tumor Necrosis Factor Alpha Rna
Length = 167
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P ++ LF + G+IE CK + + F+ + +A A L
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 83 DEFVFLGNRLKVSYA 97
+ +KVSYA
Sbjct: 65 NGLRLQTKTIKVSYA 79
>pdb|1TQZ|A Chain A, Solution Structure Of Necap1 Protein
Length = 133
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 6 DEPPGVRVYTVCDESRYLIVR 26
++ PG+ V TV D SRY ++R
Sbjct: 75 EQYPGIAVETVTDSSRYFVIR 95
>pdb|2CPJ|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
pdb|2RS8|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
Length = 99
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSN 74
T SR L V N+P +++ KLF YG E + FI+ +
Sbjct: 11 TFTQRSR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFG------FIRLETRTL 63
Query: 75 ARFAKRKLDEFVFLGNRLKVSYASQFESL 103
A AK +LD G +L+V +A SL
Sbjct: 64 AEIAKVELDNMPLRGKQLRVRFACHSASL 92
>pdb|2A5Y|A Chain A, Structure Of A Ced-4CED-9 Complex
Length = 204
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 66 FIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96
FIK R+ +N + R D+F+ LG ++K Y
Sbjct: 158 FIKTRIRNNWKEHNRSWDDFMTLGKQMKEDY 188
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 9 PGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIK 68
PG + YT + L V N+P+ +D +LF YG+ E + FI+
Sbjct: 14 PGEKTYT---QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVF------INRDRGFGFIR 64
Query: 69 FRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESL 103
+ A AK +LD + L++ +A+ +L
Sbjct: 65 LESRTLAEIAKAELDGTILKSRPLRIRFATHGAAL 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,421,265
Number of Sequences: 62578
Number of extensions: 211662
Number of successful extensions: 407
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 32
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)