Query 029812
Match_columns 187
No_of_seqs 199 out of 1228
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 04:03:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 4.7E-20 1E-24 146.4 10.9 80 18-97 32-111 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 7.1E-20 1.5E-24 159.7 11.0 79 19-97 268-346 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.6E-19 7.8E-24 155.2 10.3 79 19-97 2-80 (352)
4 TIGR01659 sex-lethal sex-letha 99.8 6.2E-19 1.3E-23 157.8 8.3 80 18-97 105-184 (346)
5 PF00076 RRM_1: RNA recognitio 99.8 1.7E-18 3.6E-23 117.1 8.4 70 23-93 1-70 (70)
6 KOG0107 Alternative splicing f 99.7 1.2E-17 2.6E-22 137.1 8.1 82 1-97 1-82 (195)
7 PF14259 RRM_6: RNA recognitio 99.7 1E-16 2.3E-21 109.9 9.0 70 23-93 1-70 (70)
8 KOG0122 Translation initiation 99.7 5.5E-17 1.2E-21 138.9 8.9 80 18-97 187-266 (270)
9 KOG0114 Predicted RNA-binding 99.7 4.5E-16 9.8E-21 118.9 10.9 76 19-97 17-92 (124)
10 KOG0145 RNA-binding protein EL 99.7 1E-16 2.2E-21 139.0 7.9 83 20-102 41-124 (360)
11 TIGR01659 sex-lethal sex-letha 99.7 2.2E-16 4.8E-21 141.3 10.0 79 19-97 192-272 (346)
12 TIGR01628 PABP-1234 polyadenyl 99.7 5E-16 1.1E-20 144.7 12.3 91 19-113 284-374 (562)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.7 3.3E-16 7.2E-21 143.2 10.8 80 18-97 293-372 (509)
14 TIGR01622 SF-CC1 splicing fact 99.7 3.8E-16 8.3E-21 141.3 10.3 78 20-97 186-263 (457)
15 COG0724 RNA-binding proteins ( 99.7 5.7E-16 1.2E-20 123.8 9.7 78 20-97 115-192 (306)
16 TIGR01645 half-pint poly-U bin 99.7 1.2E-16 2.6E-21 152.0 6.5 80 18-97 105-184 (612)
17 smart00362 RRM_2 RNA recogniti 99.7 9E-16 1.9E-20 101.5 8.9 72 22-95 1-72 (72)
18 TIGR01628 PABP-1234 polyadenyl 99.6 5E-16 1.1E-20 144.7 10.1 76 22-97 2-77 (562)
19 TIGR01645 half-pint poly-U bin 99.6 7.3E-16 1.6E-20 146.7 10.2 79 19-97 203-281 (612)
20 smart00360 RRM RNA recognition 99.6 1.2E-15 2.6E-20 100.3 8.1 71 25-95 1-71 (71)
21 PLN03120 nucleic acid binding 99.6 1.5E-15 3.3E-20 131.4 10.0 77 20-100 4-80 (260)
22 KOG0126 Predicted RNA-binding 99.6 9E-17 2E-21 133.0 2.3 84 18-101 33-116 (219)
23 TIGR01622 SF-CC1 splicing fact 99.6 1.5E-15 3.3E-20 137.3 10.1 78 19-97 88-165 (457)
24 KOG4207 Predicted splicing fac 99.6 1.2E-15 2.6E-20 128.5 7.7 78 20-97 13-90 (256)
25 TIGR01648 hnRNP-R-Q heterogene 99.6 5E-15 1.1E-19 140.4 11.6 79 18-97 56-135 (578)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 4.4E-15 9.4E-20 137.2 10.4 76 17-97 272-348 (481)
27 KOG0111 Cyclophilin-type pepti 99.6 8E-16 1.7E-20 130.9 4.7 80 18-97 8-87 (298)
28 cd00590 RRM RRM (RNA recogniti 99.6 1.3E-14 2.8E-19 96.3 9.4 74 22-96 1-74 (74)
29 KOG0125 Ataxin 2-binding prote 99.6 2.5E-15 5.4E-20 133.2 7.6 77 19-97 95-171 (376)
30 KOG0113 U1 small nuclear ribon 99.6 6.2E-15 1.3E-19 129.3 9.6 81 17-97 98-178 (335)
31 KOG4206 Spliceosomal protein s 99.6 3E-15 6.6E-20 126.5 7.3 86 18-109 7-96 (221)
32 KOG0121 Nuclear cap-binding pr 99.6 4.7E-15 1E-19 117.0 7.4 83 18-100 34-116 (153)
33 KOG0130 RNA-binding protein RB 99.6 3.1E-15 6.8E-20 119.1 6.2 79 19-97 71-149 (170)
34 PF13893 RRM_5: RNA recognitio 99.6 1.1E-14 2.3E-19 96.9 7.6 56 37-97 1-56 (56)
35 KOG0149 Predicted RNA-binding 99.6 3.5E-15 7.6E-20 127.1 6.5 76 21-97 13-88 (247)
36 KOG0108 mRNA cleavage and poly 99.6 8.7E-15 1.9E-19 134.7 9.4 82 21-102 19-100 (435)
37 PLN03213 repressor of silencin 99.6 2.4E-14 5.2E-19 132.8 11.6 75 19-97 9-85 (759)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.4E-14 3.1E-19 133.8 9.7 73 19-97 1-75 (481)
39 PLN03121 nucleic acid binding 99.6 2.6E-14 5.7E-19 122.5 10.4 78 18-99 3-80 (243)
40 KOG0117 Heterogeneous nuclear 99.5 6.8E-14 1.5E-18 128.0 10.8 80 18-97 81-161 (506)
41 KOG0131 Splicing factor 3b, su 99.5 2.1E-14 4.6E-19 118.7 5.8 81 18-98 7-87 (203)
42 KOG0148 Apoptosis-promoting RN 99.5 6.3E-14 1.4E-18 121.9 8.8 80 12-97 155-235 (321)
43 KOG0105 Alternative splicing f 99.5 5.9E-15 1.3E-19 122.8 1.9 120 19-141 5-139 (241)
44 KOG0145 RNA-binding protein EL 99.5 8.4E-14 1.8E-18 121.0 8.8 79 19-97 277-355 (360)
45 KOG0148 Apoptosis-promoting RN 99.5 6.3E-14 1.4E-18 121.9 6.9 77 21-97 63-139 (321)
46 smart00361 RRM_1 RNA recogniti 99.5 1.5E-13 3.2E-18 95.9 7.5 62 34-95 2-70 (70)
47 TIGR01648 hnRNP-R-Q heterogene 99.5 1.6E-13 3.5E-18 130.2 9.9 71 19-97 232-304 (578)
48 KOG0117 Heterogeneous nuclear 99.5 9.3E-14 2E-18 127.1 7.4 69 21-97 260-328 (506)
49 KOG0127 Nucleolar protein fibr 99.5 1.8E-13 3.9E-18 127.8 9.1 79 18-97 115-193 (678)
50 KOG0127 Nucleolar protein fibr 99.5 2.4E-13 5.3E-18 126.9 9.3 81 18-98 290-376 (678)
51 KOG0144 RNA-binding protein CU 99.4 1.7E-13 3.6E-18 125.1 7.0 84 20-103 34-121 (510)
52 KOG0144 RNA-binding protein CU 99.4 2.3E-13 4.9E-18 124.3 5.5 78 19-97 123-203 (510)
53 KOG0147 Transcriptional coacti 99.4 4.3E-13 9.3E-18 124.9 6.2 75 23-97 281-355 (549)
54 KOG0415 Predicted peptidyl pro 99.3 1.4E-12 3.1E-17 117.0 6.6 82 16-97 235-316 (479)
55 KOG0131 Splicing factor 3b, su 99.3 1.7E-12 3.7E-17 107.4 5.7 79 19-97 95-174 (203)
56 KOG0109 RNA-binding protein LA 99.3 9.5E-13 2.1E-17 115.5 3.9 69 21-97 3-71 (346)
57 TIGR01642 U2AF_lg U2 snRNP aux 99.3 1E-11 2.2E-16 113.8 9.3 80 19-98 408-500 (509)
58 KOG0123 Polyadenylate-binding 99.3 8.9E-12 1.9E-16 112.8 8.1 72 23-97 79-150 (369)
59 KOG0146 RNA-binding protein ET 99.3 5.1E-12 1.1E-16 110.3 5.2 81 17-97 282-362 (371)
60 KOG0110 RNA-binding protein (R 99.3 9.2E-12 2E-16 118.8 7.0 92 20-111 613-704 (725)
61 KOG0109 RNA-binding protein LA 99.3 6.8E-12 1.5E-16 110.2 5.6 72 18-97 76-147 (346)
62 KOG4208 Nucleolar RNA-binding 99.2 3.3E-11 7.1E-16 101.2 7.7 80 19-98 48-128 (214)
63 KOG0124 Polypyrimidine tract-b 99.2 3.8E-11 8.3E-16 108.5 6.6 77 21-97 114-190 (544)
64 KOG0132 RNA polymerase II C-te 99.2 9.9E-11 2.2E-15 112.9 8.6 83 20-108 421-503 (894)
65 KOG0123 Polyadenylate-binding 99.1 1.6E-10 3.6E-15 104.5 7.7 71 21-97 2-72 (369)
66 KOG0146 RNA-binding protein ET 99.1 2.2E-10 4.7E-15 100.2 7.8 79 18-97 17-98 (371)
67 KOG0110 RNA-binding protein (R 99.1 1.8E-10 3.9E-15 110.2 7.8 78 21-98 516-596 (725)
68 KOG1190 Polypyrimidine tract-b 99.0 5.3E-10 1.2E-14 101.9 6.6 101 20-129 297-407 (492)
69 KOG4661 Hsp27-ERE-TATA-binding 99.0 7.2E-10 1.6E-14 104.7 6.7 78 20-97 405-482 (940)
70 KOG4212 RNA-binding protein hn 98.9 2.3E-09 5E-14 98.7 8.0 77 20-97 44-121 (608)
71 KOG0153 Predicted RNA-binding 98.9 2.1E-09 4.6E-14 96.2 7.1 72 21-98 229-301 (377)
72 KOG4212 RNA-binding protein hn 98.9 2E-09 4.2E-14 99.2 6.9 75 18-97 534-608 (608)
73 KOG0533 RRM motif-containing p 98.9 5.9E-09 1.3E-13 89.9 8.3 78 19-97 82-159 (243)
74 KOG1548 Transcription elongati 98.9 1.8E-09 3.9E-14 96.7 4.5 78 19-97 133-218 (382)
75 KOG0124 Polypyrimidine tract-b 98.9 4.2E-09 9.1E-14 95.4 6.7 77 21-97 211-287 (544)
76 KOG4209 Splicing factor RNPS1, 98.9 4.3E-09 9.3E-14 90.0 6.3 78 19-97 100-177 (231)
77 KOG4205 RNA-binding protein mu 98.8 3.1E-09 6.8E-14 94.5 4.7 78 19-97 5-82 (311)
78 KOG1457 RNA binding protein (c 98.8 1.8E-08 3.9E-13 86.3 9.0 78 20-97 34-115 (284)
79 KOG0151 Predicted splicing reg 98.8 1.4E-08 3.1E-13 97.7 7.3 84 14-97 167-254 (877)
80 KOG4660 Protein Mei2, essentia 98.8 5.5E-09 1.2E-13 97.9 3.7 69 20-93 75-143 (549)
81 KOG4205 RNA-binding protein mu 98.7 1.3E-08 2.9E-13 90.5 5.9 78 19-97 96-173 (311)
82 KOG0106 Alternative splicing f 98.7 1.8E-08 3.8E-13 85.6 3.8 106 22-136 3-118 (216)
83 KOG0226 RNA-binding proteins [ 98.6 3.5E-08 7.5E-13 85.6 5.3 78 20-97 190-267 (290)
84 PF11608 Limkain-b1: Limkain b 98.6 1.2E-07 2.5E-12 70.2 7.0 77 21-107 3-84 (90)
85 KOG4454 RNA binding protein (R 98.6 1.5E-08 3.3E-13 86.5 2.3 78 18-97 7-84 (267)
86 KOG0116 RasGAP SH3 binding pro 98.6 6.9E-08 1.5E-12 89.0 6.6 77 20-97 288-364 (419)
87 PF04059 RRM_2: RNA recognitio 98.6 6.6E-07 1.4E-11 67.4 9.8 77 21-97 2-84 (97)
88 KOG1995 Conserved Zn-finger pr 98.5 5.9E-08 1.3E-12 87.1 4.2 80 18-97 64-151 (351)
89 KOG4206 Spliceosomal protein s 98.4 1.1E-06 2.4E-11 74.8 8.6 78 15-97 141-219 (221)
90 KOG0147 Transcriptional coacti 98.4 1.6E-07 3.4E-12 88.2 2.9 92 5-97 161-255 (549)
91 KOG0120 Splicing factor U2AF, 98.3 8E-07 1.7E-11 83.4 4.2 78 20-97 289-366 (500)
92 KOG4210 Nuclear localization s 98.1 1.8E-06 3.9E-11 75.9 3.5 78 19-97 183-261 (285)
93 COG5175 MOT2 Transcriptional r 98.1 6E-06 1.3E-10 74.6 6.6 77 21-97 115-200 (480)
94 PF08777 RRM_3: RNA binding mo 98.1 3.8E-05 8.3E-10 58.2 9.1 71 21-97 2-77 (105)
95 KOG1456 Heterogeneous nuclear 98.0 2.5E-05 5.5E-10 71.3 9.0 75 18-97 285-360 (494)
96 KOG0106 Alternative splicing f 98.0 5.2E-06 1.1E-10 70.6 3.9 79 11-97 89-168 (216)
97 KOG4211 Splicing factor hnRNP- 98.0 1.7E-05 3.7E-10 74.1 7.6 78 16-97 6-83 (510)
98 KOG1190 Polypyrimidine tract-b 98.0 2E-05 4.3E-10 72.5 6.9 85 9-97 403-488 (492)
99 KOG2314 Translation initiation 97.9 3.5E-05 7.6E-10 73.2 8.0 76 19-95 57-139 (698)
100 KOG1457 RNA binding protein (c 97.9 1.1E-05 2.3E-10 69.5 3.9 67 18-88 208-274 (284)
101 KOG1456 Heterogeneous nuclear 97.9 4.5E-05 9.7E-10 69.7 7.9 74 19-97 119-196 (494)
102 KOG1548 Transcription elongati 97.8 7.6E-05 1.7E-09 67.4 7.1 75 19-97 264-349 (382)
103 KOG1855 Predicted RNA-binding 97.8 2.4E-05 5.3E-10 72.2 4.0 69 18-86 229-310 (484)
104 PF14605 Nup35_RRM_2: Nup53/35 97.7 7.1E-05 1.5E-09 50.1 4.9 52 21-79 2-53 (53)
105 KOG0128 RNA-binding protein SA 97.6 5.5E-06 1.2E-10 81.3 -1.9 90 20-109 667-756 (881)
106 KOG3152 TBP-binding protein, a 97.6 7.1E-05 1.5E-09 65.2 5.0 83 21-103 75-177 (278)
107 KOG2202 U2 snRNP splicing fact 97.6 2.4E-05 5.1E-10 68.0 1.9 63 35-98 83-146 (260)
108 KOG0120 Splicing factor U2AF, 97.6 0.00021 4.5E-09 67.4 7.7 64 35-98 424-490 (500)
109 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00027 5.9E-09 53.5 6.2 77 19-97 5-89 (100)
110 PF03467 Smg4_UPF3: Smg-4/UPF3 97.2 0.00093 2E-08 54.9 6.7 82 18-99 5-97 (176)
111 KOG4211 Splicing factor hnRNP- 97.2 0.0008 1.7E-08 63.1 6.6 76 20-97 103-179 (510)
112 KOG4849 mRNA cleavage factor I 97.2 0.00078 1.7E-08 61.4 6.3 84 14-97 74-160 (498)
113 PF08952 DUF1866: Domain of un 97.1 0.002 4.4E-08 51.9 7.5 72 17-97 24-104 (146)
114 KOG4307 RNA binding protein RB 97.1 0.0012 2.6E-08 64.4 7.1 76 21-96 868-943 (944)
115 KOG0129 Predicted RNA-binding 97.1 0.0014 3E-08 61.8 6.8 64 18-81 368-432 (520)
116 KOG0112 Large RNA-binding prot 97.0 0.0011 2.5E-08 65.8 5.3 75 17-97 452-528 (975)
117 KOG0115 RNA-binding protein p5 96.9 0.0014 3E-08 57.3 4.9 68 21-89 32-99 (275)
118 KOG2068 MOT2 transcription fac 96.9 0.00041 8.8E-09 62.3 1.4 77 20-97 77-160 (327)
119 KOG0128 RNA-binding protein SA 96.8 0.00055 1.2E-08 67.6 1.7 77 20-97 736-812 (881)
120 KOG2193 IGF-II mRNA-binding pr 96.7 0.002 4.3E-08 60.0 4.6 69 21-97 2-73 (584)
121 KOG0129 Predicted RNA-binding 96.6 0.0048 1E-07 58.2 6.4 80 14-97 253-338 (520)
122 PF04847 Calcipressin: Calcipr 96.6 0.0053 1.2E-07 51.0 6.1 59 33-97 8-68 (184)
123 KOG1365 RNA-binding protein Fu 96.6 0.0032 7E-08 58.0 4.9 88 20-112 280-370 (508)
124 KOG1996 mRNA splicing factor [ 96.5 0.0062 1.3E-07 54.5 6.4 64 34-97 300-364 (378)
125 KOG4676 Splicing factor, argin 96.5 0.0044 9.5E-08 57.2 5.3 76 21-97 8-86 (479)
126 KOG0105 Alternative splicing f 96.4 0.0084 1.8E-07 50.7 6.1 62 21-89 116-177 (241)
127 KOG4307 RNA binding protein RB 96.2 0.0098 2.1E-07 58.3 6.1 79 18-97 432-511 (944)
128 PF08675 RNA_bind: RNA binding 96.2 0.022 4.7E-07 42.2 6.4 54 22-84 11-64 (87)
129 PF10309 DUF2414: Protein of u 96.0 0.031 6.7E-07 38.9 6.3 54 21-82 6-62 (62)
130 PF15023 DUF4523: Protein of u 95.9 0.021 4.5E-07 46.5 5.7 71 20-98 86-160 (166)
131 KOG1365 RNA-binding protein Fu 95.8 0.028 6E-07 52.0 6.7 59 22-81 163-225 (508)
132 KOG4574 RNA-binding protein (c 95.7 0.0063 1.4E-07 60.5 2.3 69 23-97 301-371 (1007)
133 KOG2416 Acinus (induces apopto 95.3 0.032 6.9E-07 53.9 5.6 74 18-97 442-519 (718)
134 KOG2591 c-Mpl binding protein, 95.1 0.039 8.5E-07 53.0 5.6 66 20-92 175-244 (684)
135 KOG2193 IGF-II mRNA-binding pr 95.1 0.00092 2E-08 62.2 -5.1 78 19-100 79-157 (584)
136 KOG0112 Large RNA-binding prot 94.8 0.01 2.3E-07 59.2 0.7 79 18-97 370-448 (975)
137 KOG4285 Mitotic phosphoprotein 94.1 0.16 3.5E-06 45.7 6.5 68 22-97 199-267 (350)
138 KOG4660 Protein Mei2, essentia 93.4 0.19 4.1E-06 48.1 6.1 66 44-110 413-482 (549)
139 PF07576 BRAP2: BRCA1-associat 93.1 0.78 1.7E-05 35.2 8.1 68 20-89 12-81 (110)
140 KOG2135 Proteins containing th 92.9 0.065 1.4E-06 50.5 2.2 71 20-97 372-443 (526)
141 PF11767 SET_assoc: Histone ly 92.4 0.45 9.8E-06 33.4 5.5 54 32-94 12-65 (66)
142 KOG0804 Cytoplasmic Zn-finger 91.3 0.62 1.3E-05 43.9 6.7 68 20-89 74-142 (493)
143 KOG4210 Nuclear localization s 89.3 0.27 5.9E-06 43.4 2.5 79 19-97 87-165 (285)
144 PF03880 DbpA: DbpA RNA bindin 88.8 1.1 2.4E-05 31.3 4.9 58 31-97 12-74 (74)
145 KOG2318 Uncharacterized conser 87.3 3.6 7.9E-05 40.0 8.7 84 17-100 171-308 (650)
146 COG0724 RNA-binding proteins ( 84.5 1.3 2.8E-05 35.0 3.7 75 18-92 223-297 (306)
147 KOG2253 U1 snRNP complex, subu 84.4 0.78 1.7E-05 44.9 2.7 77 10-95 30-106 (668)
148 KOG2891 Surface glycoprotein [ 78.9 2.8 6E-05 37.9 4.0 104 19-122 148-291 (445)
149 KOG4454 RNA binding protein (R 77.8 0.64 1.4E-05 40.4 -0.3 67 21-88 81-151 (267)
150 PF02714 DUF221: Domain of unk 77.1 2.8 6.1E-05 36.5 3.5 35 65-101 1-35 (325)
151 KOG4019 Calcineurin-mediated s 70.9 4.6 0.0001 34.0 3.1 72 20-97 10-87 (193)
152 KOG4676 Splicing factor, argin 68.3 1.4 3E-05 41.1 -0.5 78 20-102 151-229 (479)
153 PF10567 Nab6_mRNP_bdg: RNA-re 67.0 8 0.00017 34.8 4.0 57 20-76 15-78 (309)
154 PF03468 XS: XS domain; Inter 65.7 5.7 0.00012 30.6 2.5 49 22-73 10-67 (116)
155 KOG4365 Uncharacterized conser 57.7 2.2 4.7E-05 40.5 -1.2 77 21-98 4-80 (572)
156 KOG2295 C2H2 Zn-finger protein 54.1 2.2 4.9E-05 41.3 -1.8 75 21-95 232-306 (648)
157 PF15513 DUF4651: Domain of un 51.5 30 0.00065 24.2 3.9 36 34-70 8-43 (62)
158 COG5638 Uncharacterized conser 49.4 76 0.0016 30.3 7.3 88 17-104 143-302 (622)
159 KOG4483 Uncharacterized conser 47.3 31 0.00068 32.6 4.5 54 21-81 392-446 (528)
160 KOG4213 RNA-binding protein La 38.4 40 0.00087 28.6 3.4 57 21-81 112-169 (205)
161 KOG4008 rRNA processing protei 37.1 25 0.00053 30.9 2.1 36 15-50 35-70 (261)
162 COG5193 LHP1 La protein, small 36.0 18 0.00039 33.9 1.1 59 21-79 175-243 (438)
163 COG0150 PurM Phosphoribosylami 34.4 14 0.00031 33.8 0.2 48 34-85 275-322 (345)
164 PF07292 NID: Nmi/IFP 35 domai 31.9 29 0.00063 25.7 1.5 23 19-41 51-73 (88)
165 KOG1295 Nonsense-mediated deca 29.9 68 0.0015 29.8 3.8 69 21-89 8-79 (376)
166 KOG0115 RNA-binding protein p5 29.5 50 0.0011 29.3 2.7 27 73-99 5-31 (275)
167 PRK08559 nusG transcription an 28.0 1.6E+02 0.0034 23.3 5.2 50 35-89 23-74 (153)
168 PF11823 DUF3343: Protein of u 27.4 65 0.0014 22.1 2.6 28 63-90 2-29 (73)
169 COG5594 Uncharacterized integr 27.2 1.2E+02 0.0026 31.0 5.2 40 60-99 355-395 (827)
170 KOG4410 5-formyltetrahydrofola 24.0 1.6E+02 0.0035 26.9 4.9 48 21-73 331-378 (396)
171 smart00596 PRE_C2HC PRE_C2HC d 23.7 1.2E+02 0.0027 21.5 3.4 59 36-97 3-62 (69)
172 COG5507 Uncharacterized conser 23.7 97 0.0021 23.9 3.1 21 62-82 66-86 (117)
173 KOG2187 tRNA uracil-5-methyltr 23.1 60 0.0013 31.4 2.3 71 62-146 63-135 (534)
174 PRK11230 glycolate oxidase sub 22.3 2.6E+02 0.0057 26.4 6.4 63 20-83 189-255 (499)
175 PF00403 HMA: Heavy-metal-asso 20.3 2.5E+02 0.0054 17.9 5.6 54 22-81 1-58 (62)
176 PF04026 SpoVG: SpoVG; InterP 20.0 1.6E+02 0.0034 21.4 3.5 26 46-71 2-27 (84)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=4.7e-20 Score=146.43 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..+++|||+|||+.+++++|+++|++||+|.+|.|+.|+.|++++|||||+|.+.++|+.|++.|||+.|.|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.82 E-value=7.1e-20 Score=159.67 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.+|||+|||+.+++++|+++|++||.|++|+|+.|+.||.++|||||+|.+.++|..|+..|||..|.|+.|+|+|+
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999999999999
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.79 E-value=3.6e-19 Score=155.25 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..++|||+|||..+++++|+++|++||+|.+|+|+.++.+|+++|||||+|.+.++|..|++.|||..+.|++|+|+|+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=6.2e-19 Score=157.75 Aligned_cols=80 Identities=29% Similarity=0.392 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...++|||+|||+.+++++|+++|++||+|++|+|+.|+.|++++|||||+|.++++|..|++.|||..+.|++|+|+|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.77 E-value=1.7e-18 Score=117.06 Aligned_cols=70 Identities=24% Similarity=0.367 Sum_probs=67.6
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 23 LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
|||+|||..+++++|+++|++||.|..+.+..+ .++.++|+|||+|.+.++|..|++.|||+.+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 7899999999999999999999999999999999986
No 6
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1.2e-17 Score=137.13 Aligned_cols=82 Identities=27% Similarity=0.383 Sum_probs=77.7
Q ss_pred CCCCCCCCCCcceeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHH
Q 029812 1 MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR 80 (187)
Q Consensus 1 ~~~~~~~~~a~~~yt~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~ 80 (187)
||||++++.+. +|||+||+..+++.||+.+|+.||+|..|.|...+ .|||||+|+++-||..|++
T Consensus 1 m~r~~~~~~~~----------kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr 65 (195)
T KOG0107|consen 1 MPRYRDRNGNT----------KVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVR 65 (195)
T ss_pred CCcccccCCCc----------eEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHh
Confidence 89999998765 58999999999999999999999999999998875 6999999999999999999
Q ss_pred HhCCceeCCceeEEEec
Q 029812 81 KLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 81 ~LnG~~f~G~~L~V~~A 97 (187)
.|||+.|.|..|+|+++
T Consensus 66 ~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 66 YLDGKDICGSRIRVELS 82 (195)
T ss_pred hcCCccccCceEEEEee
Confidence 99999999999999999
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.70 E-value=1e-16 Score=109.89 Aligned_cols=70 Identities=21% Similarity=0.403 Sum_probs=65.5
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 23 LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
|||+|||+.+++++|.++|+.||.|..|.+..++. +.++|+|||+|.+.++|..|++.++|..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 99999999999999999999999999999999875
No 8
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=5.5e-17 Score=138.86 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++..+|-|.|||.++++++|.+||-+||.|.+|.+.+|+.||.+||||||+|.+.++|.+||+.|||+-+..-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46688999999999999999999999999999999999999999999999999999999999999999999999999999
No 9
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=4.5e-16 Score=118.94 Aligned_cols=76 Identities=22% Similarity=0.356 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++.|||+|||+.+|.++.++||++||+|..|+|--++.| +|.|||.|+++.+|++|.+.|+|+.+.++.|.|-|-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3689999999999999999999999999999999887765 899999999999999999999999999999999998
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1e-16 Score=139.05 Aligned_cols=83 Identities=28% Similarity=0.371 Sum_probs=79.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec-C
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA-S 98 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A-~ 98 (187)
.++|+|..||..+|++||+.||+..|+|++|++++||.+|++-||+||.|.+++||++|+..|||..++.+.|+|+|| |
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CcCC
Q 029812 99 QFES 102 (187)
Q Consensus 99 ~~e~ 102 (187)
....
T Consensus 121 Ss~~ 124 (360)
T KOG0145|consen 121 SSDS 124 (360)
T ss_pred Chhh
Confidence 5544
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=2.2e-16 Score=141.34 Aligned_cols=79 Identities=25% Similarity=0.321 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC--ceeEEEe
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVSY 96 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G--~~L~V~~ 96 (187)
..++|||+|||..+++++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|+.||+.||+..+.| ++|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999987 5899999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 272 a 272 (346)
T TIGR01659 272 A 272 (346)
T ss_pred C
Confidence 9
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.67 E-value=5e-16 Score=144.72 Aligned_cols=91 Identities=21% Similarity=0.245 Sum_probs=82.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecC
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~ 98 (187)
.+.+|||+|||..+++++|+++|++||.|.+|+++.+ .+|.++|||||+|.+.++|.+|++.|||+.|.|++|.|.+|
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a- 361 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA- 361 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec-
Confidence 4578999999999999999999999999999999999 78999999999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHHH
Q 029812 99 QFESLADTKDKLETR 113 (187)
Q Consensus 99 ~~e~~~d~r~K~~~r 113 (187)
..+++.+..+...
T Consensus 362 --~~k~~~~~~~~~~ 374 (562)
T TIGR01628 362 --QRKEQRRAHLQDQ 374 (562)
T ss_pred --cCcHHHHHHHHHH
Confidence 5555555554443
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.67 E-value=3.3e-16 Score=143.19 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.++|||+|||..+++++|.++|++||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.+|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.66 E-value=3.8e-16 Score=141.26 Aligned_cols=78 Identities=26% Similarity=0.334 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+++|||+|||..+++++|.++|++||.|..|.++.++.+|+++|||||+|.+.++|..|++.|||..+.|++|+|.||
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999998
No 15
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.65 E-value=5.7e-16 Score=123.82 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..+|||+|||..+++++|+++|.+||.|..|.+..++.++.++|+|||.|.+.++|..|+..|+|..|.|++|+|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999996
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.65 E-value=1.2e-16 Score=152.02 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...++|||+|||+.+++++|+++|++||+|.+|+|+.|+.||+++|||||+|.+.++|..|++.|||..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999876
No 17
>smart00362 RRM_2 RNA recognition motif.
Probab=99.65 E-value=9e-16 Score=101.47 Aligned_cols=72 Identities=28% Similarity=0.350 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 22 ~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
+|||+|||..++.++|+++|++||+|..+.+..++ +.++|+|||+|.+.++|..|++.++|..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 7789999999999999999999999999999999874
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.65 E-value=5e-16 Score=144.71 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=74.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 22 ~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+|||+|||..+++++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|.+|++.||+..+.|+.|+|.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999998
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=7.3e-16 Score=146.65 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..++|||+|||+.+++++|+++|+.||.|.+|++++++.+|+++|||||+|++.++|..|++.|||+.+.|+.|+|.++
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999999999
No 20
>smart00360 RRM RNA recognition motif.
Probab=99.64 E-value=1.2e-15 Score=100.33 Aligned_cols=71 Identities=27% Similarity=0.374 Sum_probs=67.8
Q ss_pred EcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 25 VRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 25 V~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|++.|+|..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988889999999999999999999999999999999999874
No 21
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=131.39 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecCC
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~~ 99 (187)
.++|||+|||+.+++++|+++|+.||+|++|.|+.++. .+|||||+|.+.++|..|+. |||..|.|+.|+|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999998853 47999999999999999995 999999999999999953
Q ss_pred c
Q 029812 100 F 100 (187)
Q Consensus 100 ~ 100 (187)
+
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 22
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=9e-17 Score=133.00 Aligned_cols=84 Identities=19% Similarity=0.370 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++..|||+|||+..||.||..+||+||+|.+|.+++|+.||+++||||..|++..+-..|+..|||..+.|+.|+|+-.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCcC
Q 029812 98 SQFE 101 (187)
Q Consensus 98 ~~~e 101 (187)
..++
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 4333
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=1.5e-15 Score=137.30 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+.++|||+|||..+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|+. |+|..|.|++|.|.++
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999996 9999999999999887
No 24
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=128.51 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
-..|-|-||-..++.++|+.+|++||.|-+|.|..|+-|++++|||||.|.+..+|+.|+++|||.++.|+.|+|++|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 367999999999999999999999999999999999999999999999999999999999999999999999999999
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=5e-15 Score=140.36 Aligned_cols=79 Identities=23% Similarity=0.236 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC-CceeEEEe
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~-G~~L~V~~ 96 (187)
...++|||+|||+.+++++|.++|++||.|.+|+|+.| .+|.++|||||+|.+.++|..||+.|||..+. |+.|.|+.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999999 79999999999999999999999999999996 77777776
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 6
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.60 E-value=4.4e-15 Score=137.15 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=71.5
Q ss_pred cCCCCeEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 17 CDESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 17 ~~es~~LyV~NLP~-~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
..++++|||+|||+ .+++++|++||++||.|.+|+++.++ +|||||+|.+.++|..|++.|||..|.|++|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999999874 6999999999999999999999999999999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
++
T Consensus 347 ~s 348 (481)
T TIGR01649 347 PS 348 (481)
T ss_pred Ec
Confidence 98
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8e-16 Score=130.86 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+..++|||++|...+++.-|...|-+||.|.+|.++.|..+++.||||||+|+..|||..||..||+..++|+.|+|.||
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
No 28
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.59 E-value=1.3e-14 Score=96.33 Aligned_cols=74 Identities=26% Similarity=0.387 Sum_probs=69.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 22 ~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
+|+|+|||..+++++|+++|+.||+|..+.+..++.+ .++|+|||+|.+.++|..|++.++|..+.|+.++|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 7789999999999999999999999999999999875
No 29
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=2.5e-15 Score=133.16 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..++|+|+|||+...+.||+.+|++||+|.+|.|+.+. .-+||||||+|++.+||++|-.+|+|..+.|++|.|..|
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 34789999999999999999999999999999999884 357999999999999999999999999999999999999
No 30
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=6.2e-15 Score=129.29 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=78.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
.++=+||||.-|+..++|..|+..|+.||+|+.|.|++|+.||+++|||||+|+++-+...|.+..+|..|.|+.|-|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
-
T Consensus 178 E 178 (335)
T KOG0113|consen 178 E 178 (335)
T ss_pred c
Confidence 7
No 31
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.58 E-value=3e-15 Score=126.47 Aligned_cols=86 Identities=24% Similarity=0.398 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----hhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLK----LFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~----lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
+++.+|||+||+..+..++|+. ||++||+|.+|...+. .+.||.|||.|.+.+.|..|+++|+|..|+|++|+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3456999999999988887665 9999999999998864 57899999999999999999999999999999999
Q ss_pred EEecCCcCChHHHHHH
Q 029812 94 VSYASQFESLADTKDK 109 (187)
Q Consensus 94 V~~A~~~e~~~d~r~K 109 (187)
|+|| ++.+|...+
T Consensus 84 iqyA---~s~sdii~~ 96 (221)
T KOG4206|consen 84 IQYA---KSDSDIIAQ 96 (221)
T ss_pred eecc---cCccchhhc
Confidence 9999 666665555
No 32
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.7e-15 Score=117.02 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..|++|||+||...++|+.|++||++.|+|..|-+-.|+-+..+-||+||+|-..++|..|++.++|+.+..++|+|+|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 029812 98 SQF 100 (187)
Q Consensus 98 ~~~ 100 (187)
+.+
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 544
No 33
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=3.1e-15 Score=119.12 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++..|||.++...++++++.+.|+.||+|++|.+-.|+.||..+|||+|+|++.++|+.||..|||..+.|..|.|+|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999999
No 34
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.57 E-value=1.1e-14 Score=96.89 Aligned_cols=56 Identities=34% Similarity=0.561 Sum_probs=52.0
Q ss_pred HHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 37 LLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 37 L~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
|+++|++||+|.+|.+..++ +|+|||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998874 589999999999999999999999999999999997
No 35
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=3.5e-15 Score=127.10 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=70.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++|||+||+|.+..++|++.|++||+|++..++.|+.||++||||||+|.|.++|.+|.+..| -.+.||+-.+..|
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchh
Confidence 689999999999999999999999999999999999999999999999999999999998654 4678998887777
No 36
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.57 E-value=8.7e-15 Score=134.66 Aligned_cols=82 Identities=26% Similarity=0.360 Sum_probs=78.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecCCc
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQF 100 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~~~ 100 (187)
..+||+|+|+++++++|.++|+..|.|.+++++.|++||+++||||++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999544
Q ss_pred CC
Q 029812 101 ES 102 (187)
Q Consensus 101 e~ 102 (187)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 33
No 37
>PLN03213 repressor of silencing 3; Provisional
Probab=99.56 E-value=2.4e-14 Score=132.75 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccH--HHHHHHHHHhCCceeCCceeEEEe
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLF--SNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~--e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
...+|||+||++.++++||..+|+.||.|.+|.|+ ++|| ||||||+|... .++.+||..|||..+.|+.|+|.-
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45789999999999999999999999999999999 4567 99999999987 789999999999999999999998
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 85 A 85 (759)
T PLN03213 85 A 85 (759)
T ss_pred c
Confidence 8
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.55 E-value=1.4e-14 Score=133.77 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHH--hCCceeCCceeEEEe
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK--LDEFVFLGNRLKVSY 96 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~--LnG~~f~G~~L~V~~ 96 (187)
+|++|||+|||+.+++++|+++|++||+|.+|.++++ +|||||+|++.++|..|++. +++..+.|++|+|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4789999999999999999999999999999999975 68999999999999999997 478999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
+
T Consensus 75 s 75 (481)
T TIGR01649 75 S 75 (481)
T ss_pred c
Confidence 8
No 39
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=2.6e-14 Score=122.47 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++.+|||+||++.+++++|+++|+.||+|.+|+|++|. ..+|+|||+|.++++|..|+ .|||..|.|++|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 456899999999999999999999999999999999984 34589999999999999999 79999999999999987
Q ss_pred CC
Q 029812 98 SQ 99 (187)
Q Consensus 98 ~~ 99 (187)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 43
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=6.8e-14 Score=127.96 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC-CceeEEEe
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~-G~~L~V~~ 96 (187)
..++.|||+.||.++.|+||.-||++.|+|-++++|.|+.+|.+||||||+|.+.++|+.||+.||+++|. |+.|.||.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999996 88999987
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 7
No 41
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.50 E-value=2.1e-14 Score=118.71 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+...+|||+||+..++++-|++||-+.|+|.+++|++|+.+...+|||||+|.++|+|+-|++.||+-.++|++|+|.-+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 029812 98 S 98 (187)
Q Consensus 98 ~ 98 (187)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 4
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.3e-14 Score=121.89 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=74.2
Q ss_pred ceeecc-CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCc
Q 029812 12 RVYTVC-DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN 90 (187)
Q Consensus 12 ~~yt~~-~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~ 90 (187)
.||.-. ..++++||+|++.-+++++|+..|++||+|.+|++.++ +|||||.|++.|.|..||-.+||+.+.|+
T Consensus 155 eV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~ 228 (321)
T KOG0148|consen 155 EVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQ 228 (321)
T ss_pred HHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCce
Confidence 445443 46799999999999999999999999999999999999 69999999999999999999999999999
Q ss_pred eeEEEec
Q 029812 91 RLKVSYA 97 (187)
Q Consensus 91 ~L~V~~A 97 (187)
.++..|.
T Consensus 229 ~VkCsWG 235 (321)
T KOG0148|consen 229 LVRCSWG 235 (321)
T ss_pred EEEEecc
Confidence 9999999
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.9e-15 Score=122.85 Aligned_cols=120 Identities=22% Similarity=0.215 Sum_probs=91.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecC
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~ 98 (187)
.++.|||+|||.++.+.||.+||.+||.|.+|.+-..+ ....||||+|+++.+|+.||.--||+.+.|..|+|+|+-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 45789999999999999999999999999999865432 234699999999999999999999999999999999993
Q ss_pred CcCChHHHHHH---------------HHHHHHHHHHHhhcCCCCCCccccccccCCCC
Q 029812 99 QFESLADTKDK---------------LETRRKEVLARLNSGRSKVPNIHSSVDLGEPS 141 (187)
Q Consensus 99 ~~e~~~d~r~K---------------~~~rr~ev~~r~~~~~~~~~~~~~~~~~~~~~ 141 (187)
...+..+.+.- ....|+.-.+-+-.++|-.-.||++||--|.+
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea 139 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA 139 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh
Confidence 33233332221 11112222333446889999999999965544
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=8.4e-14 Score=121.00 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.+|||-||.++++|.-|+.||++||.|..|++++|..|.+.+|||||++.+-++|..||..|||+.+.++.|+|+|-
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999999997
No 45
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=6.3e-14 Score=121.89 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=75.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
-.+||+-|...++.++|++.|.+||+|.+++|++|..|+++||||||.|-+.++|++||..|||..+.+|.|+-.||
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999
No 46
>smart00361 RRM_1 RNA recognition motif.
Probab=99.48 E-value=1.5e-13 Score=95.92 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=56.1
Q ss_pred HHHHHHhhc----cCCCeeEEE-eccCCCC--CCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 34 GDDLLKLFA----TYGDIEECK-PMDAEDC--DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 34 eedL~~lFs----~fG~I~~V~-il~dk~t--g~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
+++|+++|+ +||+|.+|. ++.++.+ +.++|+|||+|.+.++|..|++.|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578889998 999999995 6666666 9999999999999999999999999999999999874
No 47
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.47 E-value=1.6e-13 Score=130.18 Aligned_cols=71 Identities=25% Similarity=0.372 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC--CCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATY--GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~f--G~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..++|||+|||..+++++|+++|++| |+|++|++++ |||||+|.+.++|..|++.|||+.|.|+.|+|+|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998764 5999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 304 A 304 (578)
T TIGR01648 304 A 304 (578)
T ss_pred c
Confidence 9
No 48
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=9.3e-14 Score=127.10 Aligned_cols=69 Identities=26% Similarity=0.350 Sum_probs=67.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+.|||+||+.++|++.|+++|++||.|++|+.++| ||||+|.+.++|.+|++.|||+.+.|..|.|.+|
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 67999999999999999999999999999998876 9999999999999999999999999999999999
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.8e-13 Score=127.83 Aligned_cols=79 Identities=23% Similarity=0.268 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+...|+|+|||+.+.+.+|..+|+.||.|.+|.|++.++++-+ |||||+|.+..+|..|++.+||..|.|+++-|+||
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 45678999999999999999999999999999999987765555 99999999999999999999999999999999999
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2.4e-13 Score=126.93 Aligned_cols=81 Identities=23% Similarity=0.350 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHh-----CC-ceeCCce
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL-----DE-FVFLGNR 91 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~L-----nG-~~f~G~~ 91 (187)
.+..+|||+|||+++++++|.++|++||+|..+.|+.+++||.++|.|||.|.+..+|..||... .| ..+.|+.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 35689999999999999999999999999999999999999999999999999999999999987 45 7788999
Q ss_pred eEEEecC
Q 029812 92 LKVSYAS 98 (187)
Q Consensus 92 L~V~~A~ 98 (187)
|+|..|-
T Consensus 370 Lkv~~Av 376 (678)
T KOG0127|consen 370 LKVTLAV 376 (678)
T ss_pred Eeeeecc
Confidence 9999993
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.7e-13 Score=125.14 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee-CC--ceeEEEe
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF-LG--NRLKVSY 96 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f-~G--~~L~V~~ 96 (187)
.-+|||+.+|..++|.||++||++||.|.+|.|++|+.|+.++||+||+|.+.++|..|+.+|+.... .| .+++|.|
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 35799999999999999999999999999999999999999999999999999999999999998654 44 5899999
Q ss_pred c-CCcCCh
Q 029812 97 A-SQFESL 103 (187)
Q Consensus 97 A-~~~e~~ 103 (187)
| .+.+++
T Consensus 114 Ad~E~er~ 121 (510)
T KOG0144|consen 114 ADGERERI 121 (510)
T ss_pred cchhhhcc
Confidence 9 555553
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=2.3e-13 Score=124.29 Aligned_cols=78 Identities=24% Similarity=0.344 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCce-eCC--ceeEEE
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV-FLG--NRLKVS 95 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~-f~G--~~L~V~ 95 (187)
+.++|||+-|+...+|.|++++|++||.|++|.|++|. .+.+||||||+|.+.|-|..||+.|||.. +.| .+|-|.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 45789999999999999999999999999999999994 68999999999999999999999999965 555 589999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
||
T Consensus 202 FA 203 (510)
T KOG0144|consen 202 FA 203 (510)
T ss_pred ec
Confidence 99
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.39 E-value=4.3e-13 Score=124.90 Aligned_cols=75 Identities=28% Similarity=0.314 Sum_probs=73.3
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 23 LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
|||+||.+.+++++|+.+|++||.|+.|.+..|.+||.++|||||+|.+.++|++|+.+|||..+.|+.|+|+.-
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 999999999999999999999999999999999889999999999999999999999999999999999999876
No 54
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.4e-12 Score=117.04 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=79.1
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 16 ~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
+.++.+.|||..|++.++.+||.-+||.||+|.+|.+++|..||.+--||||+|++.+++++|.-+|++..+.++.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 44677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
|+
T Consensus 315 FS 316 (479)
T KOG0415|consen 315 FS 316 (479)
T ss_pred hh
Confidence 99
No 55
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.33 E-value=1.7e-12 Score=107.43 Aligned_cols=79 Identities=22% Similarity=0.220 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEE-EeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC-KPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V-~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
-+.+|||+||.+.+++..|++.|+.||.+... +|+++.+||.++|||||.|.+.+.+..|+..|||+.+..+++.|+||
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 35789999999999999999999999999886 89999999999999999999999999999999999999999999999
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.32 E-value=9.5e-13 Score=115.51 Aligned_cols=69 Identities=25% Similarity=0.405 Sum_probs=66.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+|||+|||..+++.+|+.||++||+|.+|.|+++ ||||..++...|+.||+.|+|+.++|..|.|+-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 36999999999999999999999999999999987 8999999999999999999999999999999987
No 57
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.29 E-value=1e-11 Score=113.76 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCC--C--------CHHHHHHhhccCCCeeEEEeccCC---CCCCceeEEEEEEccHHHHHHHHHHhCCc
Q 029812 19 ESRYLIVRNVPSL--G--------CGDDLLKLFATYGDIEECKPMDAE---DCDPFTDVYFIKFRLFSNARFAKRKLDEF 85 (187)
Q Consensus 19 es~~LyV~NLP~~--~--------teedL~~lFs~fG~I~~V~il~dk---~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~ 85 (187)
++.+|+|.||... + ..++|+++|++||.|+.|.|+++. .++...|+|||+|.+.++|..|+..|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 5678999999642 1 136799999999999999998752 34567899999999999999999999999
Q ss_pred eeCCceeEEEecC
Q 029812 86 VFLGNRLKVSYAS 98 (187)
Q Consensus 86 ~f~G~~L~V~~A~ 98 (187)
.|.|+.|.|.|.+
T Consensus 488 ~~~gr~v~~~~~~ 500 (509)
T TIGR01642 488 KFNDRVVVAAFYG 500 (509)
T ss_pred EECCeEEEEEEeC
Confidence 9999999999994
No 58
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=8.9e-12 Score=112.76 Aligned_cols=72 Identities=22% Similarity=0.398 Sum_probs=69.3
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 23 LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
|||.||++.++..+|+++|+.||+|.+|+++.+.. | ++|| ||+|+++++|..||+.|||..+.|+.|.|..+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 99999999999999999999999999999999854 4 9999 99999999999999999999999999999988
No 59
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=5.1e-12 Score=110.29 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=78.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
.+++++|||-.||.+..+.||..+|-+||.|.+.++.-|+.|+.+|.|+||.|+++.+|+.||..|||+.+.-++|+|..
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
-
T Consensus 362 K 362 (371)
T KOG0146|consen 362 K 362 (371)
T ss_pred c
Confidence 7
No 60
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=9.2e-12 Score=118.85 Aligned_cols=92 Identities=18% Similarity=0.309 Sum_probs=83.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecCC
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~~ 99 (187)
.++|+|+|||+..+..+++.||..||.|.+|+|+.....+.++|||||.|-++.+|.+|+++|.++.|+|+.|.++||..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 57999999999999999999999999999999998777788899999999999999999999999999999999999965
Q ss_pred cCChHHHHHHHH
Q 029812 100 FESLADTKDKLE 111 (187)
Q Consensus 100 ~e~~~d~r~K~~ 111 (187)
-.+.+.++.|..
T Consensus 693 d~~~e~~r~r~A 704 (725)
T KOG0110|consen 693 DNTMEALRERTA 704 (725)
T ss_pred chHHHHHHHHHH
Confidence 556666666644
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.25 E-value=6.8e-12 Score=110.18 Aligned_cols=72 Identities=29% Similarity=0.424 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..+++|+|+||.+..+.+||++.|.+||+|.+|.|++| |+||.|+-.++|..||+.|||.+|.|++|+|..+
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 36789999999999999999999999999999999986 9999999999999999999999999999999988
No 62
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.22 E-value=3.3e-11 Score=101.22 Aligned_cols=80 Identities=13% Similarity=0.260 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC-CCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATY-GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~f-G~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...-+||..+|...-+.++...|.+| |.|..+++-+++.||.++|||||+|++.+.|..|-+.||++.|+|+.|++.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 44679999999999999999999999 78888888899999999999999999999999999999999999999999999
Q ss_pred C
Q 029812 98 S 98 (187)
Q Consensus 98 ~ 98 (187)
|
T Consensus 128 p 128 (214)
T KOG4208|consen 128 P 128 (214)
T ss_pred C
Confidence 4
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=3.8e-11 Score=108.48 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=74.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+++||+.+.+.+.|+.|+..|.+||+|++|++--|+.|++.+|||||+|+=+|.|..|++.|||..+.|+.|+|..-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999865
No 64
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.15 E-value=9.9e-11 Score=112.92 Aligned_cols=83 Identities=27% Similarity=0.344 Sum_probs=73.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecCC
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~~ 99 (187)
|+||||++||..+++.||..+|+.||+|.+|.++.. +|||||++....+|.+|+.+|....+.++.|+|.||-.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 589999999999999999999999999999999876 79999999999999999999999999999999999933
Q ss_pred cCChHHHHH
Q 029812 100 FESLADTKD 108 (187)
Q Consensus 100 ~e~~~d~r~ 108 (187)
+-.+++.++
T Consensus 495 ~G~kse~k~ 503 (894)
T KOG0132|consen 495 KGPKSEYKD 503 (894)
T ss_pred CCcchhhhh
Confidence 333333333
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.6e-10 Score=104.54 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=68.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..|||+ +.+|+..|+++|+++|+|.+|++++|. | +-|||||.|.++++|.+|++.||...+.|++|+|.|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence 358999 789999999999999999999999998 6 9999999999999999999999999999999999999
No 66
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=2.2e-10 Score=100.19 Aligned_cols=79 Identities=28% Similarity=0.432 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC-C--ceeEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-G--NRLKV 94 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~-G--~~L~V 94 (187)
.+.++|||+-|...-.|+|++.||+.||.|++|.+++.. .|.+||||||.|.+..+|..||..|+|..-. | ..|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 356899999999999999999999999999999999985 5899999999999999999999999997654 4 47999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
.||
T Consensus 96 K~A 98 (371)
T KOG0146|consen 96 KFA 98 (371)
T ss_pred Eec
Confidence 999
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.8e-10 Score=110.18 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=70.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCC---CceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCD---PFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg---~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++|||+||++.++.++|..+|...|.|..|.|...++.. .+.|||||+|.+.++|+.|++.|+|+.+.|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 449999999999999999999999999999887665321 35699999999999999999999999999999999999
Q ss_pred C
Q 029812 98 S 98 (187)
Q Consensus 98 ~ 98 (187)
+
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 5
No 68
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.01 E-value=5.3e-10 Score=101.93 Aligned_cols=101 Identities=28% Similarity=0.346 Sum_probs=82.4
Q ss_pred CCeEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecC
Q 029812 20 SRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (187)
Q Consensus 20 s~~LyV~NLP~-~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~ 98 (187)
+..|.|.||.. .+|.+-|..||+-||+|.+|+|+..+ +..|+|+|.|...|..|+..|+|..++|++|+|.|+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57899999987 57889999999999999999999986 3689999999999999999999999999999999992
Q ss_pred ------CcCChHH---HHHHHHHHHHHHHHHhhcCCCCCC
Q 029812 99 ------QFESLAD---TKDKLETRRKEVLARLNSGRSKVP 129 (187)
Q Consensus 99 ------~~e~~~d---~r~K~~~rr~ev~~r~~~~~~~~~ 129 (187)
..+..+| +++..+ ..++|++...+|+-
T Consensus 372 H~~vqlp~egq~d~glT~dy~~----spLhrfkkpgsKN~ 407 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGN----SPLHRFKKPGSKNY 407 (492)
T ss_pred CccccCCCCCCccccccccCCC----CchhhccCcccccc
Confidence 2333334 555544 35788876555543
No 69
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.99 E-value=7.2e-10 Score=104.72 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+++|||.+|...+...||+.||++||+|+-.+++++..+---+.|+||++.+.++|.+||..|+.+.++|+.|.|.-+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 578999999998888999999999999999999998777667889999999999999999999999999999999988
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.94 E-value=2.3e-09 Score=98.74 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=71.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhc-cCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFA-TYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs-~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.+||.|||+++.+.+|++||. +-|+|+-|.++.| ..|++||+|.|+|+++|.+++|++.||-+.+.|++|.|.=-
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 35699999999999999999996 7899999999998 57999999999999999999999999999999999999844
No 71
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=2.1e-09 Score=96.20 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=65.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHH-HhCCceeCCceeEEEecC
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR-KLDEFVFLGNRLKVSYAS 98 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~-~LnG~~f~G~~L~V~~A~ 98 (187)
++|||+||...+++.+|++.|.+||+|+.|.++.. +|+|||+|.+.++|+.|.. .+|-..+.|.+|+|.|++
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 78999999989999999999999999999999987 5799999999999999986 456667789999999993
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.92 E-value=2e-09 Score=99.21 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...++|||+|||.+.|+..|++-|-.||.|..+.|+.. |+++| .|.|.++++|+.|++.|||..+.|+.|+|.|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 45678999999999999999999999999999998654 77777 89999999999999999999999999999984
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.89 E-value=5.9e-09 Score=89.90 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+..|+|.|||..++++||.+||..||.++.+-+-.+ ..|.+.|.|-|.|...+||..|++.++|..+.|++|++...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3478999999999999999999999999999988888 57999999999999999999999999999999999999888
No 74
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.87 E-value=1.8e-09 Score=96.65 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeE--------EEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCc
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--------CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN 90 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~--------V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~ 90 (187)
-++.|||+|||.++|-+++.++|+++|-|.. |++..+.. |+.+|=|.|.|-..++...|++.||+..|.|.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 4577999999999999999999999999976 67777754 99999999999999999999999999999999
Q ss_pred eeEEEec
Q 029812 91 RLKVSYA 97 (187)
Q Consensus 91 ~L~V~~A 97 (187)
.|+|+-|
T Consensus 212 ~~rVerA 218 (382)
T KOG1548|consen 212 KLRVERA 218 (382)
T ss_pred EEEEehh
Confidence 9999988
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=4.2e-09 Score=95.43 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=74.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++|||..+.++..++||+..|+.||+|..|.+.+++.++..+||+||+|.+..+-..||..||-+.+.|.-|+|--+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999776
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.86 E-value=4.3e-09 Score=90.03 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+.+.+||+|+.+.++.+++...|+.||.|..|.|+.|+.+|.++|||||+|.+.+.+..|++ |||..+.|+.+.|.+.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 46789999999999988899999999999999999999999999999999999999999998 9999999999999987
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.83 E-value=3.1e-09 Score=94.46 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++.+|||++|+|.++++.|++.|++||+|.+|.+++|+.++.++||+||+|.+++....++.. .-+.+.|+.|.+.-|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 678999999999999999999999999999999999999999999999999999988888753 445677777766666
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.83 E-value=1.8e-08 Score=86.35 Aligned_cols=78 Identities=22% Similarity=0.222 Sum_probs=67.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEecc-CCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC---CceeEEE
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMD-AEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL---GNRLKVS 95 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~-dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~---G~~L~V~ 95 (187)
-++|||.+||.++...||+.||-.|-.-+.+.+-. ++.....+-+|||+|.+..+|..|++.|||..|. |..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 48999999999999999999999999888886643 3222233469999999999999999999999997 7899999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
+|
T Consensus 114 lA 115 (284)
T KOG1457|consen 114 LA 115 (284)
T ss_pred eh
Confidence 99
No 79
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.77 E-value=1.4e-08 Score=97.66 Aligned_cols=84 Identities=19% Similarity=0.261 Sum_probs=73.8
Q ss_pred eeccCC-CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCC---CCCCceeEEEEEEccHHHHHHHHHHhCCceeCC
Q 029812 14 YTVCDE-SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE---DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (187)
Q Consensus 14 yt~~~e-s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk---~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G 89 (187)
++..++ .++|||+||++.++++.|...|+.||+|..|+|+-.+ +....+.+|||.|-+..||++|++.|+|..+.+
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 444444 4789999999999999999999999999999998553 234556799999999999999999999999999
Q ss_pred ceeEEEec
Q 029812 90 NRLKVSYA 97 (187)
Q Consensus 90 ~~L~V~~A 97 (187)
..|++-|+
T Consensus 247 ~e~K~gWg 254 (877)
T KOG0151|consen 247 YEMKLGWG 254 (877)
T ss_pred eeeeeccc
Confidence 99999999
No 80
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=5.5e-09 Score=97.88 Aligned_cols=69 Identities=29% Similarity=0.476 Sum_probs=64.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
.++|+|-|||..+++++|..+|+.||+|.+|+.-.. .+|..||+|-|+-+|++|++.|++..+.|+.|+
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 478999999999999999999999999999765444 379999999999999999999999999999998
No 81
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.75 E-value=1.3e-08 Score=90.46 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..+++||++||..+++++|++.|.+||.|.++.++.|..+..++||+||+|.+.++...+.. ..-+.|.|+.+.|.-|
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeec
Confidence 35689999999999999999999999999999999999999999999999999999999875 5889999999999999
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=1.8e-08 Score=85.60 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=80.1
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecCC--
Q 029812 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ-- 99 (187)
Q Consensus 22 ~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~~-- 99 (187)
.+||++||+.+.+.||..+|..||.|.+|.+.. ||+||.|++..+|..|+..|||+.|.|..+.|+|+-.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 589999999999999999999999999998764 6999999999999999999999999999999999921
Q ss_pred c---CCh-H----HHHHHHHHHHHHHHHHhhcCCCCCCccccccc
Q 029812 100 F---ESL-A----DTKDKLETRRKEVLARLNSGRSKVPNIHSSVD 136 (187)
Q Consensus 100 ~---e~~-~----d~r~K~~~rr~ev~~r~~~~~~~~~~~~~~~~ 136 (187)
. .+. . ....+... .+.-..++-++.+....||+.+|
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p-~~s~~r~~~~~~~~r~~~qdl~d 118 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPP-SRTHFRLIVRNLSLRVSWQDLKD 118 (216)
T ss_pred cccCCCCCCCccchhhccCCc-ccccceeeeccchhhhhHHHHhh
Confidence 0 110 1 11111110 01122333467777788888887
No 83
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.65 E-value=3.5e-08 Score=85.63 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..+||.+-|...++.+-|-..|.+|-.....++++|+.||+++||+||.|.+++++..|++.|||+.+..++|+..-+
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 367999999999999999999999999999999999999999999999999999999999999999999999887644
No 84
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.64 E-value=1.2e-07 Score=70.17 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=49.1
Q ss_pred CeEEEcCCCCCCCH----HHHHHhhccCCC-eeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 21 RYLIVRNVPSLGCG----DDLLKLFATYGD-IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 21 ~~LyV~NLP~~~te----edL~~lFs~fG~-I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
+.|||.|||...+. .-|+.|+..+|. |.+|. .|.|.|.|.+++.|.+|.+-|+|..++|+.|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46999999987765 458888888874 44442 2589999999999999999999999999999999
Q ss_pred ecCCcCChHHHH
Q 029812 96 YASQFESLADTK 107 (187)
Q Consensus 96 ~A~~~e~~~d~r 107 (187)
|.|......+++
T Consensus 73 ~~~~~r~~~~~~ 84 (90)
T PF11608_consen 73 FSPKNREFNETK 84 (90)
T ss_dssp SS--S-------
T ss_pred EcCCcccccCcc
Confidence 997555444443
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=1.5e-08 Score=86.47 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+..++|||.|+-..++++-|.+||-+-|+|.+|.|..+++.+. + ||||.|.++-+...|++.|||-.+++.+|+|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-K-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC-c-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4568999999999999999999999999999999999987544 4 9999999999999999999999999999999887
No 86
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.61 E-value=6.9e-08 Score=88.96 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=65.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..+|||+|||.+++.++|++.|.+||.|+...|..-...++...||||+|++.+++..|+.+- -..+.|++|.|+=-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEec
Confidence 456999999999999999999999999999987654433444489999999999999999864 66677889999844
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.57 E-value=6.6e-07 Score=67.36 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=67.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcc--CCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC----CceeEE
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFAT--YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL----GNRLKV 94 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~--fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~----G~~L~V 94 (187)
+||.|+|||...+.++|.+++.. .|...=+.++-|-.++-+.|||||.|.+++.|..-.+.++|+... .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999888877653 466666788888888999999999999999999999999999886 467899
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
+||
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 999
No 88
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.55 E-value=5.9e-08 Score=87.08 Aligned_cols=80 Identities=21% Similarity=0.252 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeE--------EEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--------CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~--------V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G 89 (187)
....+|||.+||..+++++|.+.|.++|.|.. |.|-+|++|++++|-|.|+|+|...|+.|+..++++.|.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 34568999999999999999999999999965 6788999999999999999999999999999999999999
Q ss_pred ceeEEEec
Q 029812 90 NRLKVSYA 97 (187)
Q Consensus 90 ~~L~V~~A 97 (187)
.+|+|..|
T Consensus 144 n~ikvs~a 151 (351)
T KOG1995|consen 144 NTIKVSLA 151 (351)
T ss_pred CCchhhhh
Confidence 99999999
No 89
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.43 E-value=1.1e-06 Score=74.80 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=71.9
Q ss_pred eccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC-CceeE
Q 029812 15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLK 93 (187)
Q Consensus 15 t~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~-G~~L~ 93 (187)
+...++..||+.|||..++.+.|..+|.+|+...+|+++... .|.|||+|.+...|..|...|+|..+- ...|+
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 345678999999999999999999999999999999999864 689999999999999999999999997 88999
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|+||
T Consensus 216 i~~a 219 (221)
T KOG4206|consen 216 ITFA 219 (221)
T ss_pred eccc
Confidence 9998
No 90
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.39 E-value=1.6e-07 Score=88.16 Aligned_cols=92 Identities=16% Similarity=0.250 Sum_probs=79.6
Q ss_pred CCCCCCcceeeccCC---CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHH
Q 029812 5 KDEPPGVRVYTVCDE---SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81 (187)
Q Consensus 5 ~~~~~a~~~yt~~~e---s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~ 81 (187)
+++|+....--..++ -+++|+-.|+...++.||+++|+.+|+|.+|.|+.|+.++.++|.|||+|.|.++...|| .
T Consensus 161 kr~p~r~~~~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-a 239 (549)
T KOG0147|consen 161 KRSPPREASRILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-A 239 (549)
T ss_pred ccCCcccccccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-h
Confidence 344555444333333 378999999988999999999999999999999999999999999999999999999999 7
Q ss_pred hCCceeCCceeEEEec
Q 029812 82 LDEFVFLGNRLKVSYA 97 (187)
Q Consensus 82 LnG~~f~G~~L~V~~A 97 (187)
|.|..+.|-+|.|...
T Consensus 240 LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 240 LSGQRLLGVPVIVQLS 255 (549)
T ss_pred hcCCcccCceeEeccc
Confidence 9999999999999866
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.25 E-value=8e-07 Score=83.44 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...+||+|||...++..+.++...||++...+++.+..+|.++||||-+|.++.....|+..|||..+.++.|.|..|
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999999988
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.13 E-value=1.8e-06 Score=75.94 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=72.9
Q ss_pred CCCeEE-EcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLI-VRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~Ly-V~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++.++| |.||+..+++++|+..|..+|.|..+++..++.++.++|||+|.|.....+..|+.. +...+.|+++.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344455 999999999999999999999999999999999999999999999999999999987 899999999999999
No 93
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.12 E-value=6e-06 Score=74.58 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=61.1
Q ss_pred CeEEEcCCCCCCCHHH----H--HHhhccCCCeeEEEeccCCCCCCc-eeE--EEEEEccHHHHHHHHHHhCCceeCCce
Q 029812 21 RYLIVRNVPSLGCGDD----L--LKLFATYGDIEECKPMDAEDCDPF-TDV--YFIKFRLFSNARFAKRKLDEFVFLGNR 91 (187)
Q Consensus 21 ~~LyV~NLP~~~teed----L--~~lFs~fG~I~~V~il~dk~tg~~-rG~--AFV~F~~~e~A~~Ai~~LnG~~f~G~~ 91 (187)
+-+||-+||+.+-.++ | .+.|++||+|..|.+-+......+ .+. .||+|.+.++|.+||...||..+.|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999998765554 4 388999999999987654322111 122 399999999999999999999999999
Q ss_pred eEEEec
Q 029812 92 LKVSYA 97 (187)
Q Consensus 92 L~V~~A 97 (187)
|+..|.
T Consensus 195 lkatYG 200 (480)
T COG5175 195 LKATYG 200 (480)
T ss_pred EeeecC
Confidence 999987
No 94
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.06 E-value=3.8e-05 Score=58.23 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=45.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCc-----eeCCceeEEE
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF-----VFLGNRLKVS 95 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~-----~f~G~~L~V~ 95 (187)
..|.|.+++..++.++|+++|++||+|.-|.+.... ..|+|.|.+.++|+.|+..+... .+.+..+++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468899999999999999999999999999887762 37999999999999999877654 4455565555
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 44
No 95
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.03 E-value=2.5e-05 Score=71.31 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 18 DESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~~-~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
.++..+.|.+|... +.-+.|..||-.||.|++|+.|+.+ .|.|.|++.|....++|+..||+..++|.+|.|++
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 35688999999874 5668899999999999999999987 58999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
+
T Consensus 360 S 360 (494)
T KOG1456|consen 360 S 360 (494)
T ss_pred c
Confidence 8
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=5.2e-06 Score=70.65 Aligned_cols=79 Identities=27% Similarity=0.284 Sum_probs=66.5
Q ss_pred cceeecc-CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC
Q 029812 11 VRVYTVC-DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (187)
Q Consensus 11 ~~~yt~~-~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G 89 (187)
...|-+. .....|+|.|++..+.+.+|.+.|.++|.+....+. +++|||+|...++|..|+..|+|..+.|
T Consensus 89 ~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~ 160 (216)
T KOG0106|consen 89 SRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNG 160 (216)
T ss_pred hhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcC
Confidence 4444442 345789999999999999999999999999555442 5699999999999999999999999999
Q ss_pred ceeEEEec
Q 029812 90 NRLKVSYA 97 (187)
Q Consensus 90 ~~L~V~~A 97 (187)
+.|.+.++
T Consensus 161 ~~l~~~~~ 168 (216)
T KOG0106|consen 161 RRISVEKN 168 (216)
T ss_pred ceeeeccc
Confidence 99999655
No 97
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.01 E-value=1.7e-05 Score=74.06 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=64.9
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 16 ~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
...+...|-+++|||+.|++||.++|+-. .|+++.+.+ .+|+..|=|||+|.+.++++.|++ .|-..+..+-|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 34556778889999999999999999998 477766555 479999999999999999999997 47777777778776
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
-+
T Consensus 82 ~~ 83 (510)
T KOG4211|consen 82 TA 83 (510)
T ss_pred cc
Confidence 55
No 98
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.96 E-value=2e-05 Score=72.52 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=71.9
Q ss_pred CCcceeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC
Q 029812 9 PGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (187)
Q Consensus 9 ~a~~~yt~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~ 88 (187)
.+--.+...+++.+|-..|+|.+++|++|.++|..-|-..+......+ .+-+|+++++++|+|..|+-.|+.+.+.
T Consensus 403 gsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k----d~kmal~q~~sveeA~~ali~~hnh~lg 478 (492)
T KOG1190|consen 403 GSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK----DRKMALPQLESVEEAIQALIDLHNHYLG 478 (492)
T ss_pred ccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC----CcceeecccCChhHhhhhccccccccCC
Confidence 333344556889999999999999999999999999998777655443 2569999999999999999999999998
Q ss_pred Cc-eeEEEec
Q 029812 89 GN-RLKVSYA 97 (187)
Q Consensus 89 G~-~L~V~~A 97 (187)
+. .|+|+|+
T Consensus 479 en~hlRvSFS 488 (492)
T KOG1190|consen 479 ENHHLRVSFS 488 (492)
T ss_pred CCceEEEEee
Confidence 76 7999998
No 99
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=3.5e-05 Score=73.24 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=63.1
Q ss_pred CCCeEEEcCCCCCCC------HHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC-ce
Q 029812 19 ESRYLIVRNVPSLGC------GDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG-NR 91 (187)
Q Consensus 19 es~~LyV~NLP~~~t------eedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G-~~ 91 (187)
..+.|.|-|+|-.-. ..-|..+|+++|+|....++-++++| .+||.|++|.+..+|..|++.|||+.|.- ++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 347899999996422 24578999999999999999887666 89999999999999999999999999974 45
Q ss_pred eEEE
Q 029812 92 LKVS 95 (187)
Q Consensus 92 L~V~ 95 (187)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5553
No 100
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.90 E-value=1.1e-05 Score=69.48 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=57.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~ 88 (187)
....+|||-||.+.++|++|+.+|+.|-.....+|-.. .| .-+||+.|++.+.|..|+..|+|..+-
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 34578999999999999999999999999888876543 12 348999999999999999999998774
No 101
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.89 E-value=4.5e-05 Score=69.73 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=62.9
Q ss_pred CCCeEEEcCCCC--CCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCc--eeEE
Q 029812 19 ESRYLIVRNVPS--LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN--RLKV 94 (187)
Q Consensus 19 es~~LyV~NLP~--~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~--~L~V 94 (187)
+++.|.+.=|++ .+|-+-|+.+.-..|+|.+|.|++. +| -.|.|+|++.+.|++|+..|||..++.. .|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 345666666655 5788999999999999999999975 22 3799999999999999999999999854 7999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
+||
T Consensus 194 eyA 196 (494)
T KOG1456|consen 194 EYA 196 (494)
T ss_pred Eec
Confidence 999
No 102
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.76 E-value=7.6e-05 Score=67.37 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=63.2
Q ss_pred CCCeEEEcCCC--C--CC-------CHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee
Q 029812 19 ESRYLIVRNVP--S--LG-------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (187)
Q Consensus 19 es~~LyV~NLP--~--~~-------teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f 87 (187)
..++|.++|+= . .. .++||.+-.++||.|.+|.+... .+.|.+-|.|.+.++|..||+.|+|..|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 45789999982 1 11 24678888999999999998865 3579999999999999999999999999
Q ss_pred CCceeEEEec
Q 029812 88 LGNRLKVSYA 97 (187)
Q Consensus 88 ~G~~L~V~~A 97 (187)
.|+.|..+..
T Consensus 340 dgRql~A~i~ 349 (382)
T KOG1548|consen 340 DGRQLTASIW 349 (382)
T ss_pred cceEEEEEEe
Confidence 9999998877
No 103
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.75 E-value=2.4e-05 Score=72.15 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=58.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccC---CCC--CC--------ceeEEEEEEccHHHHHHHHHHhCC
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDA---EDC--DP--------FTDVYFIKFRLFSNARFAKRKLDE 84 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~d---k~t--g~--------~rG~AFV~F~~~e~A~~Ai~~LnG 84 (187)
.++++|.+-|||.+-..+.|.+||+.+|.|..|+|++- +.. +. .+-+|+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46899999999999899999999999999999999876 322 11 256899999999999999998865
Q ss_pred ce
Q 029812 85 FV 86 (187)
Q Consensus 85 ~~ 86 (187)
..
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 43
No 104
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.72 E-value=7.1e-05 Score=50.15 Aligned_cols=52 Identities=21% Similarity=0.407 Sum_probs=42.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHH
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai 79 (187)
+.|-|.|.|+.. .+++...|.+||+|.++.+... ...++|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~-~~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDL-AEEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchH-HHHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 567889998764 4566669999999999988733 358999999999999985
No 105
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=5.5e-06 Score=81.28 Aligned_cols=90 Identities=18% Similarity=0.121 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecCC
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~~ 99 (187)
..++||+||+..+.++||...|+.+|.++.+.+.-...++.+||.|+|.|..+++|.+|+...+++.+.-..+-|+-.|-
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~pf 746 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPPF 746 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCCC
Confidence 35789999999999999999999999999998887778899999999999999999999987666555533444544444
Q ss_pred cCChHHHHHH
Q 029812 100 FESLADTKDK 109 (187)
Q Consensus 100 ~e~~~d~r~K 109 (187)
.-+.++++.-
T Consensus 747 ~gt~e~~k~l 756 (881)
T KOG0128|consen 747 QGTKEELKSL 756 (881)
T ss_pred CCchHHHHhh
Confidence 4455555544
No 106
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.65 E-value=7.1e-05 Score=65.20 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=70.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCC--------CCcee----EEEEEEccHHHHHHHHHHhCCceeC
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC--------DPFTD----VYFIKFRLFSNARFAKRKLDEFVFL 88 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~t--------g~~rG----~AFV~F~~~e~A~~Ai~~LnG~~f~ 88 (187)
..||+++||+.+...-|+++|++||.|-+|.+-...++ |.+++ =|||+|.+...|...-..|||..+.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 57999999999999999999999999999988766554 33333 3799999999999999999999999
Q ss_pred Cc--------eeEEEecCCcCCh
Q 029812 89 GN--------RLKVSYASQFESL 103 (187)
Q Consensus 89 G~--------~L~V~~A~~~e~~ 103 (187)
|+ .+.|.|-|.++..
T Consensus 155 gkk~S~~~~dlWNmKYLprFKW~ 177 (278)
T KOG3152|consen 155 GKKKSPFRDDLWNMKYLPRFKWV 177 (278)
T ss_pred CCCCCchHHhhhhhhhccCcchH
Confidence 87 3678888888763
No 107
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.63 E-value=2.4e-05 Score=67.96 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=55.0
Q ss_pred HHHHHhhc-cCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecC
Q 029812 35 DDLLKLFA-TYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (187)
Q Consensus 35 edL~~lFs-~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~ 98 (187)
+||..-|+ +||+|+++++..+ ....-+|-++|.|...++|+.|+..|||-.|.|++|+..+.|
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555566 9999999987765 445678999999999999999999999999999999999996
No 108
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.59 E-value=0.00021 Score=67.45 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=55.3
Q ss_pred HHHHHhhccCCCeeEEEeccC-C--CCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecC
Q 029812 35 DDLLKLFATYGDIEECKPMDA-E--DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (187)
Q Consensus 35 edL~~lFs~fG~I~~V~il~d-k--~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~ 98 (187)
++++.-+++||.|..|.|.++ . .-....|-.||+|.+.++++.|+..|.|..|.|+.+..+|-+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 456667999999999999877 2 223567789999999999999999999999999999999984
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.53 E-value=0.00027 Score=53.47 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=53.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEE-eccCC------CCCCceeEEEEEEccHHHHHHHHHHhCCceeCCce
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAE------DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR 91 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~-il~dk------~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~ 91 (187)
..+-|.|-+.|+. ....+-..|++||+|.+.. +.++. ..-.....-.|+|.++.+|.+|++ -||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3466899999986 6678889999999998885 21110 001123589999999999999997 5999999986
Q ss_pred e-EEEec
Q 029812 92 L-KVSYA 97 (187)
Q Consensus 92 L-~V~~A 97 (187)
| -|.|+
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 5 57777
No 110
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.24 E-value=0.00093 Score=54.94 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=54.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcc-CCCe---eEEE--eccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCc-
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFAT-YGDI---EECK--PMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN- 90 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~-fG~I---~~V~--il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~- 90 (187)
.+..+|-||+||+.+|++++.+..+. +|.- ..+. .....-....-..|||.|.+.++...-.+.++|+.|.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 35678999999999999999998888 7777 3333 111111111234799999999999999999999999643
Q ss_pred ----eeEEEecCC
Q 029812 91 ----RLKVSYASQ 99 (187)
Q Consensus 91 ----~L~V~~A~~ 99 (187)
+-.|.|||-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 568999964
No 111
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.21 E-value=0.0008 Score=63.08 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=61.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeE-EEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEE-CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~-V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...|-+++||+.++++||.++|+--=.|.+ |.++.++ .+++.|=|||+|++.+.|++|+.. +...+..+-|.|--|
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 357889999999999999999997755555 4555554 467899999999999999999864 666777777888755
No 112
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.21 E-value=0.00078 Score=61.41 Aligned_cols=84 Identities=15% Similarity=0.117 Sum_probs=68.5
Q ss_pred eeccCCCCeEEEcCCCCCCCHHHHHHhhccCC--CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCce
Q 029812 14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYG--DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR 91 (187)
Q Consensus 14 yt~~~es~~LyV~NLP~~~teedL~~lFs~fG--~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~ 91 (187)
|+-....-.+||+||-|.+|.+||.+....-| .|.+++...++..|+++|||+|...+..+.++-++.|--+.++|..
T Consensus 74 ~s~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 74 TSSEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred ccccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 33333445799999999999999887766665 5677788888889999999999999999999999999999999975
Q ss_pred eEE-Eec
Q 029812 92 LKV-SYA 97 (187)
Q Consensus 92 L~V-~~A 97 (187)
-.| .|.
T Consensus 154 P~V~~~N 160 (498)
T KOG4849|consen 154 PTVLSYN 160 (498)
T ss_pred Ceeeccc
Confidence 444 444
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.15 E-value=0.002 Score=51.91 Aligned_cols=72 Identities=24% Similarity=0.267 Sum_probs=54.5
Q ss_pred cCCCCeEEEcCCCCC------CCH---HHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee
Q 029812 17 CDESRYLIVRNVPSL------GCG---DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (187)
Q Consensus 17 ~~es~~LyV~NLP~~------~te---edL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f 87 (187)
.++..++.|+=+.+. ..+ .+|-+.|+.||+|.-|+...+ .-+|+|.+-++|-+|+. |||..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 345677777666522 122 368889999999999998876 58999999999999985 899999
Q ss_pred CCceeEEEec
Q 029812 88 LGNRLKVSYA 97 (187)
Q Consensus 88 ~G~~L~V~~A 97 (187)
.|+.|+|..-
T Consensus 95 ~g~~l~i~LK 104 (146)
T PF08952_consen 95 NGRTLKIRLK 104 (146)
T ss_dssp TTEEEEEEE-
T ss_pred CCEEEEEEeC
Confidence 9999999977
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.13 E-value=0.0012 Score=64.41 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=68.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
+.|-++|+|+.++-+|+-++|.-|-.+-.--+++-.+.|..+|-+-|.|++.++|..|...|+++.+..+.+++.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4788999999999999999999998887765666667899999999999999999999999999999999888754
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0014 Score=61.82 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=60.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhc-cCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHH
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFA-TYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs-~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~ 81 (187)
++.+||||++||.-++.++|-.+|+ -||.|.-+-|=.|++-+.++|-|=|+|.+..+=.+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4679999999999999999999999 999999999999988899999999999999999999864
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.96 E-value=0.0011 Score=65.81 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=67.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC--ceeEE
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKV 94 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G--~~L~V 94 (187)
.-+.+.+||++|+.......|...|..||.|..|.+-.. .-||+|.|++...|+.|++.|-|..|.| +.|.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 346788999999998889999999999999999886654 2499999999999999999999999987 57999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
.||
T Consensus 526 dla 528 (975)
T KOG0112|consen 526 DLA 528 (975)
T ss_pred ccc
Confidence 999
No 117
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.91 E-value=0.0014 Score=57.26 Aligned_cols=68 Identities=29% Similarity=0.217 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G 89 (187)
..|||.||+..+..+.|..-|+.||+|+...++-| +.++..+=++|.|.....|..|.+...-.-|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 78999999999999999999999999999877766 457888899999999999999999886555544
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.89 E-value=0.00041 Score=62.27 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=62.5
Q ss_pred CCeEEEcCCCCCC-CHHHHH--HhhccCCCeeEEEeccCCC----CCCceeEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 029812 20 SRYLIVRNVPSLG-CGDDLL--KLFATYGDIEECKPMDAED----CDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (187)
Q Consensus 20 s~~LyV~NLP~~~-teedL~--~lFs~fG~I~~V~il~dk~----tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L 92 (187)
.+.+||-+||... .+..|. +.|++||.|..|.+-.+.. .+.+- -++|+|+..++|..||...+|..+.|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3568888998754 455566 6799999999999888752 12222 49999999999999999999999999998
Q ss_pred EEEec
Q 029812 93 KVSYA 97 (187)
Q Consensus 93 ~V~~A 97 (187)
+.+|.
T Consensus 156 ka~~g 160 (327)
T KOG2068|consen 156 KASLG 160 (327)
T ss_pred HHhhC
Confidence 88888
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.80 E-value=0.00055 Score=67.60 Aligned_cols=77 Identities=12% Similarity=0.080 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...|+|+|+|+..|.++|+.+|+.+|.+.+..++..+ .|+++|-|+|.|.++.+|..+...+++..+.-+.+.|..+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 3579999999999999999999999999999987774 6899999999999999999999999998888887777776
No 120
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.72 E-value=0.002 Score=60.00 Aligned_cols=69 Identities=20% Similarity=0.158 Sum_probs=56.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEE--EeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCce-eCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEEC--KPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV-FLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V--~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~-f~G~~L~V~~A 97 (187)
+.||++||.+..+..||..+|..- .|--- .+++ .|||||.+.+..-|.+|++.++|+. +.|+++.|.++
T Consensus 2 nklyignL~p~~~psdl~svfg~a-k~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA-KIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc-cCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 469999999999999999999754 11111 1222 4899999999999999999999975 78999999999
No 121
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0048 Score=58.25 Aligned_cols=80 Identities=14% Similarity=0.068 Sum_probs=54.5
Q ss_pred eeccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEec-cCC--CCCCcee---EEEEEEccHHHHHHHHHHhCCcee
Q 029812 14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPM-DAE--DCDPFTD---VYFIKFRLFSNARFAKRKLDEFVF 87 (187)
Q Consensus 14 yt~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il-~dk--~tg~~rG---~AFV~F~~~e~A~~Ai~~LnG~~f 87 (187)
|....=+++|||++||+.++|+.|...|..||.+.- .-. +.. .--.++| |+|+.|+++.+...-+ ++..+
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll---~aC~~ 328 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLL---SACSE 328 (520)
T ss_pred CCccccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHH---HHHhh
Confidence 333444688999999999999999999999999873 322 111 1124566 9999999988776543 33344
Q ss_pred CCceeEEEec
Q 029812 88 LGNRLKVSYA 97 (187)
Q Consensus 88 ~G~~L~V~~A 97 (187)
....+-++.+
T Consensus 329 ~~~~~yf~vs 338 (520)
T KOG0129|consen 329 GEGNYYFKVS 338 (520)
T ss_pred cccceEEEEe
Confidence 4444444433
No 122
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.61 E-value=0.0053 Score=51.05 Aligned_cols=59 Identities=25% Similarity=0.340 Sum_probs=47.8
Q ss_pred CHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhC--CceeCCceeEEEec
Q 029812 33 CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD--EFVFLGNRLKVSYA 97 (187)
Q Consensus 33 teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~Ln--G~~f~G~~L~V~~A 97 (187)
..+.|+++|..|+.+....+++. -+-..|.|.+.++|..|+..|+ +..|.|..|+|-|+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 34789999999999999988876 3579999999999999999999 99999999999999
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.57 E-value=0.0032 Score=58.00 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeE---EEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEE---CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~---V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..+|-+++||+..+.+|+-++|..|..-++ |.++.+ ..|.+.|-|||+|.+.++|..|...-+.+...++-|.|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 467999999999999999999999987665 456655 3588899999999999999999998888887788888875
Q ss_pred cCCcCChHHHHHHHHH
Q 029812 97 ASQFESLADTKDKLET 112 (187)
Q Consensus 97 A~~~e~~~d~r~K~~~ 112 (187)
+ +.+|+.+-+.+
T Consensus 359 ~----S~eeln~vL~~ 370 (508)
T KOG1365|consen 359 C----SVEELNEVLSG 370 (508)
T ss_pred c----cHHHHHHHHhc
Confidence 5 56666655544
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.54 E-value=0.0062 Score=54.48 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=52.4
Q ss_pred HHHHHHhhccCCCeeEEEeccCCCCCCc-eeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 34 GDDLLKLFATYGDIEECKPMDAEDCDPF-TDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 34 eedL~~lFs~fG~I~~V~il~dk~tg~~-rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+++..+-.++||+|..|-|...+..... .---||+|+..++|.+|+-.|||..|.|+..+.+|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 3567888999999999987665321111 125799999999999999999999999999999988
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.51 E-value=0.0044 Score=57.17 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=64.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCC---CCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE---DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk---~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..|-|.||.+.++.+.++.||+-.|+|.++.++... ......-.+||.|.|...+..| +.|..+.|-|..|-|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEec
Confidence 479999999999999999999999999999886532 2344556899999999999988 579999999998877655
No 126
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.43 E-value=0.0084 Score=50.72 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=57.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G 89 (187)
..+.|++||++..+.||++..-+-|+|--..+.+| |++.|.|...|+.+.|+++|+...|..
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccC
Confidence 46999999999999999999999999987788777 699999999999999999999988864
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.20 E-value=0.0098 Score=58.31 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=65.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeE-EEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE-CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~-V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
.-+..|||..||..+++.++-+.|..--.|++ |.|... .++.-++.|||.|..++.+..|...-.-+.+..+.|+|.-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 34678999999999999999999999999999 666554 5778899999999999999999765555555567889975
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
.
T Consensus 511 i 511 (944)
T KOG4307|consen 511 I 511 (944)
T ss_pred h
Confidence 5
No 128
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.17 E-value=0.022 Score=42.22 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=42.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCC
Q 029812 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84 (187)
Q Consensus 22 ~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG 84 (187)
..+|. .|......||.+||+.||.|. |.-+.|. -|||...+.+.|..|++.++-
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 44555 999999999999999999996 6666662 799999999999999998863
No 129
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.01 E-value=0.031 Score=38.94 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=45.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccC---CCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHh
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATY---GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~f---G~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~L 82 (187)
..|+|+|+.. ++.+|+...|..| .....|..+.|. -+-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 5799999975 8899999999999 234578889884 5899999999999999865
No 130
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.91 E-value=0.021 Score=46.46 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=55.4
Q ss_pred CCeEEEcCCCCCCCH-HHH---HHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 20 SRYLIVRNVPSLGCG-DDL---LKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 20 s~~LyV~NLP~~~te-edL---~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
=.+|.|+=|...+.. +|| ....+.||+|.+|.+.- +-.|.|.|+|..+|..|+.++.. .-.|..++.+
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 367888877766532 444 45578999999999764 34799999999999999999877 6678888888
Q ss_pred ecC
Q 029812 96 YAS 98 (187)
Q Consensus 96 ~A~ 98 (187)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 873
No 131
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.78 E-value=0.028 Score=52.02 Aligned_cols=59 Identities=22% Similarity=0.202 Sum_probs=47.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCC----CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHH
Q 029812 22 YLIVRNVPSLGCGDDLLKLFATYG----DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81 (187)
Q Consensus 22 ~LyV~NLP~~~teedL~~lFs~fG----~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~ 81 (187)
.|-.++||++.++.|+.++|.+-- ..+.|..++. ..|+.+|=|||.|..+++|+.|+.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH
Confidence 466699999999999999997433 4445554443 4588899999999999999999965
No 132
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.68 E-value=0.0063 Score=60.52 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=59.6
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC--CceeEEEec
Q 029812 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL--GNRLKVSYA 97 (187)
Q Consensus 23 LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~--G~~L~V~~A 97 (187)
.++.|.+-..+-.-|..||++||.|.++..+++ -..|.|.|...+.|..|.++|+|+.+. |-+-+|.+|
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 344455555667789999999999999999887 358999999999999999999999875 889999999
No 133
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.33 E-value=0.032 Score=53.89 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=60.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhc-cCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC---CceeE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFA-TYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL---GNRLK 93 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs-~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~---G~~L~ 93 (187)
..++.|+|.||=.-.|.-.|++|.+ ..|.|++. .|.. -+-.+||.|.+.++|..-+.+|+|...- ++.|-
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3568899999987789999999999 66666666 3332 1457999999999999999999998774 56799
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|.|+
T Consensus 516 adf~ 519 (718)
T KOG2416|consen 516 ADFV 519 (718)
T ss_pred eeec
Confidence 9998
No 134
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.13 E-value=0.039 Score=52.96 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=53.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcc--CCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCC--ceeCCcee
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFAT--YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE--FVFLGNRL 92 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~--fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG--~~f~G~~L 92 (187)
.+.+++|-||..+..++++.||.- +-++.+|....+ .-=||+|++..||+.|.+.|.. +.|.|++|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 356788999999999999999985 778888876655 2379999999999999988764 55677654
No 135
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.13 E-value=0.00092 Score=62.17 Aligned_cols=78 Identities=28% Similarity=0.394 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEec-cCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPM-DAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il-~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++.+-|+|+|+...++.|..|..+||.++.|..+ .+.. .-..-|+|...+.++.||.+|+|..|....++|.|-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 46779999999999999999999999999999653 3322 345668999999999999999999999999999999
Q ss_pred CCc
Q 029812 98 SQF 100 (187)
Q Consensus 98 ~~~ 100 (187)
|+-
T Consensus 155 Pde 157 (584)
T KOG2193|consen 155 PDE 157 (584)
T ss_pred chh
Confidence 743
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.75 E-value=0.01 Score=59.22 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..+++||++||+..+++.+|+-.|..+|.|++|.|-.-+ -+.---||||.|.+...|-.|+-.+.|..+....+++-|.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 356899999999999999999999999999999876542 1222348999999999999999999998887666666655
No 137
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.06 E-value=0.16 Score=45.67 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=54.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCcee-EEEec
Q 029812 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL-KVSYA 97 (187)
Q Consensus 22 ~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L-~V~~A 97 (187)
-+-|-++|+. ...-|..+|++||+|.+...... -.+-+|.|.+.-+|.+|+.. ||+.|.|..+ -|.-+
T Consensus 199 WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 199 WVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred eEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 4666788874 56778899999999998775532 24899999999999999975 9999999864 57765
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.36 E-value=0.19 Score=48.06 Aligned_cols=66 Identities=8% Similarity=-0.046 Sum_probs=45.2
Q ss_pred CCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee---CC-ceeEEEecCCcCChHHHHHHH
Q 029812 44 YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF---LG-NRLKVSYASQFESLADTKDKL 110 (187)
Q Consensus 44 fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f---~G-~~L~V~~A~~~e~~~d~r~K~ 110 (187)
.|.=.=+.++-|-.+....|||||.|.+++++..+.++.||+.. .+ +...|.|| ..+.++++.+++
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYA-rIQGk~~Li~hF 482 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYA-RIQGKEALIEHF 482 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehh-hhhchHHHHHHh
Confidence 44444445555545566789999999999999999999999874 43 45688888 223334444443
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.09 E-value=0.78 Score=35.18 Aligned_cols=68 Identities=24% Similarity=0.202 Sum_probs=49.8
Q ss_pred CCeEEEcCCC-CCCCHHHHHHhhccCCC-eeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC
Q 029812 20 SRYLIVRNVP-SLGCGDDLLKLFATYGD-IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (187)
Q Consensus 20 s~~LyV~NLP-~~~teedL~~lFs~fG~-I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G 89 (187)
+..|.|=-+| ..++-++|..+.+.+-. |..++|++|. ..++=.+.++|.+.++|..-.+.+||+.|..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3445554444 45556778777776655 4456888874 3456689999999999999999999999964
No 140
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.88 E-value=0.065 Score=50.51 Aligned_cols=71 Identities=20% Similarity=0.126 Sum_probs=58.3
Q ss_pred CCeEEEcCCCCCC-CHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLG-CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~-teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.|-+.-.|..+ +-++|...|.+||+|+.|.+-.. -.-|.|+|.+..+|-.|. ...|..|.|+.|+|-|.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 4456666666654 56899999999999999987665 236999999999997775 47999999999999998
No 141
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.40 E-value=0.45 Score=33.43 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=44.8
Q ss_pred CCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 029812 32 GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (187)
Q Consensus 32 ~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V 94 (187)
++-++++..+..|+-.. |+.|+ .| -||.|.+..+|++|.+..||..+.+..|.+
T Consensus 12 ~~v~d~K~~Lr~y~~~~---I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 12 VTVEDFKKRLRKYRWDR---IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ccHHHHHHHHhcCCcce---EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 57789999999997643 33443 45 689999999999999999999999988775
No 142
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.33 E-value=0.62 Score=43.90 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=58.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccC-CCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATY-GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~f-G~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G 89 (187)
++.|.|-.+|..++-.||..+...| -.|.+|++++|.. .++=.+.|.|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999988776654 4678899999643 455689999999999999999999999975
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=89.29 E-value=0.27 Score=43.40 Aligned_cols=79 Identities=14% Similarity=-0.021 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...++|++++-+.+.+.+...+|..+|.+..+..........++|++.|.|...+.+..|+.....+...+..+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4678999999998888889999999999999988887788999999999999999999999765556777766655544
No 144
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.83 E-value=1.1 Score=31.35 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=34.8
Q ss_pred CCCHHHHHHhhccCCCee-----EEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 31 LGCGDDLLKLFATYGDIE-----ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 31 ~~teedL~~lFs~fG~I~-----~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++..+|-.++..-+.|. .|.|..+ |+||+-. .+.|..+++.|++..+.|++++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467778888877776554 5666665 8999865 45899999999999999999999865
No 145
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.30 E-value=3.6 Score=40.02 Aligned_cols=84 Identities=21% Similarity=0.269 Sum_probs=63.8
Q ss_pred cCCCCeEEEcCCCCC-CCHHHHHHhhccC----CCeeEEEeccC----------CCCCC---------------------
Q 029812 17 CDESRYLIVRNVPSL-GCGDDLLKLFATY----GDIEECKPMDA----------EDCDP--------------------- 60 (187)
Q Consensus 17 ~~es~~LyV~NLP~~-~teedL~~lFs~f----G~I~~V~il~d----------k~tg~--------------------- 60 (187)
..++++|=|-||.|. +.-.||..+|+.| |.|.+|.|... ..+|+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 356789999999995 5678999998866 58999987532 12233
Q ss_pred ---------------ce-eEEEEEEccHHHHHHHHHHhCCceeCC--ceeEEEecCCc
Q 029812 61 ---------------FT-DVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVSYASQF 100 (187)
Q Consensus 61 ---------------~r-G~AFV~F~~~e~A~~Ai~~LnG~~f~G--~~L~V~~A~~~ 100 (187)
-+ -||.|+|.+++.|..-....||..|.. ..|-+.|-|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 11 289999999999999999999999974 55566666643
No 146
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=84.54 E-value=1.3 Score=34.99 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=56.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L 92 (187)
.....+++.+++..+...++..+|..+|.+..+.+...........+.++.+.....+..+..........+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKILGRGP 297 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceeecccCc
Confidence 456789999999999999999999999999888877776555555666666666666666666555544444433
No 147
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.35 E-value=0.78 Score=44.87 Aligned_cols=77 Identities=18% Similarity=0.099 Sum_probs=64.8
Q ss_pred CcceeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC
Q 029812 10 GVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (187)
Q Consensus 10 a~~~yt~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G 89 (187)
+.-+.+..++.-++||+|+-..+..+-+..+...+|-|.+++.+. |||..|..+..+..|+..+.-..+.|
T Consensus 30 ~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~ 100 (668)
T KOG2253|consen 30 IQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDD 100 (668)
T ss_pred CcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCc
Confidence 334455566788999999999888888999999999999887665 89999999999999999999888888
Q ss_pred ceeEEE
Q 029812 90 NRLKVS 95 (187)
Q Consensus 90 ~~L~V~ 95 (187)
..|-+.
T Consensus 101 ~kl~~~ 106 (668)
T KOG2253|consen 101 QKLIEN 106 (668)
T ss_pred chhhcc
Confidence 766443
No 148
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=78.92 E-value=2.8 Score=37.85 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=59.9
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHhhccCCCeeEEEec-cC----CCCCC-----ceeEEE---------E
Q 029812 19 ESRYLIVRNVPSL------------GCGDDLLKLFATYGDIEECKPM-DA----EDCDP-----FTDVYF---------I 67 (187)
Q Consensus 19 es~~LyV~NLP~~------------~teedL~~lFs~fG~I~~V~il-~d----k~tg~-----~rG~AF---------V 67 (187)
..-+||+-+||-. ..++-|...|..||.|..|.|+ -| .-+|+ +.||+| |
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3468888888842 2456799999999999998763 22 22332 455543 5
Q ss_pred EEccHHHHHHHHHHhCCcee--------CCceeEEEecCCcCChHHHHHH-HHHHHHHHHHHhh
Q 029812 68 KFRLFSNARFAKRKLDEFVF--------LGNRLKVSYASQFESLADTKDK-LETRRKEVLARLN 122 (187)
Q Consensus 68 ~F~~~e~A~~Ai~~LnG~~f--------~G~~L~V~~A~~~e~~~d~r~K-~~~rr~ev~~r~~ 122 (187)
+|..-..-..|+..|-|..+ +.-.++|+|.....-.+-..+| .++||+--..|+.
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrhlsevqiakraeerrqieterlr 291 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRHLSEVQIAKRAEERRQIETERLR 291 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhhhhHHHHHHHHHHHhhhhHHHHh
Confidence 55554455566666666543 2235788887333222222333 3445554445544
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=77.76 E-value=0.64 Score=40.35 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=56.9
Q ss_pred CeEEEcC----CCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC
Q 029812 21 RYLIVRN----VPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (187)
Q Consensus 21 ~~LyV~N----LP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~ 88 (187)
.+++-++ |...++++.++..|++-|+|+.+++..+.+ |..+.++|+.+...++.-.|.+..+|....
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 4556666 666788899999999999999999998876 788899999999999999999888876654
No 150
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=77.08 E-value=2.8 Score=36.47 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=28.2
Q ss_pred EEEEEccHHHHHHHHHHhCCceeCCceeEEEecCCcC
Q 029812 65 YFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFE 101 (187)
Q Consensus 65 AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~~~e 101 (187)
|||+|++..+|..|.+.+.... ++.++|..||+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999999766554 3667999996543
No 151
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=70.87 E-value=4.6 Score=33.98 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=56.2
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCc-eeE
Q 029812 20 SRYLIVRNVPSLG-C----GDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-RLK 93 (187)
Q Consensus 20 s~~LyV~NLP~~~-t----eedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~-~L~ 93 (187)
.+.+++.+++..+ + ......||-+|-+..-..+++. .+.--|.|.+++.|..|.-.+++..|.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 4668888888753 2 2345677887777666666654 45788999999999999999999999998 788
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
.=||
T Consensus 84 ~yfa 87 (193)
T KOG4019|consen 84 LYFA 87 (193)
T ss_pred EEEc
Confidence 7777
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=68.30 E-value=1.4 Score=41.11 Aligned_cols=78 Identities=12% Similarity=0.020 Sum_probs=58.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec-C
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA-S 98 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A-~ 98 (187)
.++++|.+|+..+...++-++|..+|+|.-..+.... ..-++-|.|....+...|++ ++|..|.-....+..- |
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 3789999999999999999999999999877655432 23366699999999999986 5788877444333333 5
Q ss_pred CcCC
Q 029812 99 QFES 102 (187)
Q Consensus 99 ~~e~ 102 (187)
+.+.
T Consensus 226 ~kK~ 229 (479)
T KOG4676|consen 226 HKKR 229 (479)
T ss_pred cccc
Confidence 5444
No 153
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=66.97 E-value=8 Score=34.79 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCC-------CCCCceeEEEEEEccHHHHH
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE-------DCDPFTDVYFIKFRLFSNAR 76 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk-------~tg~~rG~AFV~F~~~e~A~ 76 (187)
.+.|...||...++=..+-..|.+||+|+.|.++.+. +..+..-...+.|-+.+.+-
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 4679999999999889999999999999999998775 12233446778887776654
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=65.73 E-value=5.7 Score=30.62 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=28.1
Q ss_pred eEEEcCCCCC---------CCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHH
Q 029812 22 YLIVRNVPSL---------GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFS 73 (187)
Q Consensus 22 ~LyV~NLP~~---------~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e 73 (187)
.++|-|+|.. ...++|.+.|+.|.+++ ++.+.++. -.+|+|.|.|..--
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCCh
Confidence 3566677543 24578999999999985 77777653 46899999998843
No 155
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.74 E-value=2.2 Score=40.45 Aligned_cols=77 Identities=5% Similarity=-0.172 Sum_probs=61.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecC
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~ 98 (187)
...++..+|..+.+++|.-+|.-||-|.-+.+-.-...+...-.+||+-. ..+|..+|..+--..++|..++|..||
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcCc
Confidence 45677889999999999999999999988765443333455557887754 567888998888889999999999995
No 156
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=54.15 E-value=2.2 Score=41.28 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=60.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
+.|||+|+++.++-.+|..+.+.+--+..+-+-.+..-..+..++||+|.---+-.-|..+|||..+....+.-.
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~se~ 306 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLSES 306 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccccc
Confidence 469999999999999999999999999888765554444566789999998888888888899988876655433
No 157
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=51.48 E-value=30 Score=24.15 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=22.1
Q ss_pred HHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEc
Q 029812 34 GDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFR 70 (187)
Q Consensus 34 eedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~ 70 (187)
..+|++.|+..|+|.-+.+- ...+...+=.|=|.|+
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn-~~eS~~~~~~GGvV~e 43 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN-PYESDEDRLTGGVVME 43 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc-ccccCCCeEeccEEEe
Confidence 36899999999999876543 2233333334444444
No 158
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=49.40 E-value=76 Score=30.27 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=65.0
Q ss_pred cCCCCeEEEcCCCCC-CCHHHHHHhhccC----CCeeEEEeccCC-----------------------------------
Q 029812 17 CDESRYLIVRNVPSL-GCGDDLLKLFATY----GDIEECKPMDAE----------------------------------- 56 (187)
Q Consensus 17 ~~es~~LyV~NLP~~-~teedL~~lFs~f----G~I~~V~il~dk----------------------------------- 56 (187)
.++.++|-|-||.|. +...||..+|+.| |+|..|.|....
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 356789999999995 5678999999976 678878764210
Q ss_pred -----CCC------Ccee-------------------EEEEEEccHHHHHHHHHHhCCceeC--CceeEEEecCCcCChH
Q 029812 57 -----DCD------PFTD-------------------VYFIKFRLFSNARFAKRKLDEFVFL--GNRLKVSYASQFESLA 104 (187)
Q Consensus 57 -----~tg------~~rG-------------------~AFV~F~~~e~A~~Ai~~LnG~~f~--G~~L~V~~A~~~e~~~ 104 (187)
+.| .-+| ||.|.+++.+.+..-....+|..+. +..+-+.|-|..-+..
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~~tfd 302 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDSLTFD 302 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCCCcccc
Confidence 001 1122 8999999999999999999999987 4567788887655443
No 159
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.30 E-value=31 Score=32.57 Aligned_cols=54 Identities=26% Similarity=0.208 Sum_probs=45.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCe-eEEEeccCCCCCCceeEEEEEEccHHHHHHHHHH
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDI-EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I-~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~ 81 (187)
..|=|.++|.....+||-.+|+.||.= -+|+.+.|. .||-.|.....|..|+-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 468899999999999999999999863 356777774 799999999999999853
No 160
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=38.36 E-value=40 Score=28.55 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=37.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCC-CCCceeEEEEEEccHHHHHHHHHH
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAED-CDPFTDVYFIKFRLFSNARFAKRK 81 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~-tg~~rG~AFV~F~~~e~A~~Ai~~ 81 (187)
+++|.. |....-++|...-+ |++..|.+-.... ...++|--||+|...+.|...++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455555 22223345555545 8999887644321 137899999999999999987754
No 161
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.10 E-value=25 Score=30.91 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=31.5
Q ss_pred eccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEE
Q 029812 15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC 50 (187)
Q Consensus 15 t~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V 50 (187)
+..++..+||+-|||...+++-|..+-++.|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 455678999999999999999999999999977665
No 162
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=36.03 E-value=18 Score=33.93 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=49.3
Q ss_pred CeEEEcCCCCCCCH--------HHHHHhhcc--CCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHH
Q 029812 21 RYLIVRNVPSLGCG--------DDLLKLFAT--YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79 (187)
Q Consensus 21 ~~LyV~NLP~~~te--------edL~~lFs~--fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai 79 (187)
+.+|+.+.+...+. +++...|.. .|++..|.+-++.....++|..|++|.....|+++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 46788888765444 489999999 788888888888767889999999999999999875
No 163
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=34.36 E-value=14 Score=33.80 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=38.8
Q ss_pred HHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCc
Q 029812 34 GDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF 85 (187)
Q Consensus 34 eedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~ 85 (187)
...+.+...+.|.|..-.+.+. -+-|.+||..-..++|..+++.|++.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rt----FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRT----FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHH----hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3667788889998877665544 23689999999999999999999986
No 164
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=31.94 E-value=29 Score=25.66 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhh
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLF 41 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lF 41 (187)
..++|.|.|||....+++|++..
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 45889999999999999998763
No 165
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.90 E-value=68 Score=29.80 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=45.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEE-eccCC--CCCCceeEEEEEEccHHHHHHHHHHhCCceeCC
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAE--DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~-il~dk--~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G 89 (187)
..+-|++||+.+++++|.+-..+|-.=..-. ..... .-..-.+.|+|.|...++-..-.+-++|++|..
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 5678899999999988776555533211110 01000 001225689999999999888888999999964
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=29.45 E-value=50 Score=29.33 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCceeCCceeEEEecCC
Q 029812 73 SNARFAKRKLDEFVFLGNRLKVSYASQ 99 (187)
Q Consensus 73 e~A~~Ai~~LnG~~f~G~~L~V~~A~~ 99 (187)
.-|..|++.|||....|+.|+|-||+.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~ 31 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH 31 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc
Confidence 457889999999999999999999964
No 167
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=28.03 E-value=1.6e+02 Score=23.32 Aligned_cols=50 Identities=8% Similarity=-0.136 Sum_probs=34.3
Q ss_pred HHHHHhhccCCC-eeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCce-eCC
Q 029812 35 DDLLKLFATYGD-IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV-FLG 89 (187)
Q Consensus 35 edL~~lFs~fG~-I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~-f~G 89 (187)
+.|.......|- |.+|.++.. +.||-||+....+++..+++.+.|.. |.|
T Consensus 23 ~~L~~~~~~~~~~i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v~g~lg 74 (153)
T PRK08559 23 LMLAMRAKKENLPIYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHVRGVVP 74 (153)
T ss_pred HHHHHHHHhCCCcEEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCEeeeCC
Confidence 345554432221 666766654 68999999998999999998887643 444
No 168
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.38 E-value=65 Score=22.15 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=23.2
Q ss_pred eEEEEEEccHHHHHHHHHHhCCceeCCc
Q 029812 63 DVYFIKFRLFSNARFAKRKLDEFVFLGN 90 (187)
Q Consensus 63 G~AFV~F~~~e~A~~Ai~~LnG~~f~G~ 90 (187)
.+.+|.|.+..+|.+|-+.|....+.++
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3689999999999999999987666443
No 169
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=27.19 E-value=1.2e+02 Score=31.01 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=29.1
Q ss_pred CceeEEEEEEccHHHHHHHHHHhCCceeCCce-eEEEecCC
Q 029812 60 PFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR-LKVSYASQ 99 (187)
Q Consensus 60 ~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~-L~V~~A~~ 99 (187)
.+.+.|||+|++..+|+.|.+..-+....|.. ..+..||+
T Consensus 355 t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPn 395 (827)
T COG5594 355 TPTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPN 395 (827)
T ss_pred CccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCcc
Confidence 34568999999999999999876555555554 55555553
No 170
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=23.95 E-value=1.6e+02 Score=26.87 Aligned_cols=48 Identities=13% Similarity=-0.051 Sum_probs=33.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHH
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFS 73 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e 73 (187)
+-|||.|||.++.-.||+.-.-+-|-+- +.-.-.| ..|-||..|-+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p----m~iswkg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP----MSISWKG-HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc----eeEeeec-CCcceeEecCCcc
Confidence 4699999999998889887777665442 1111112 2577999998743
No 171
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=23.75 E-value=1.2e+02 Score=21.51 Aligned_cols=59 Identities=14% Similarity=0.136 Sum_probs=42.2
Q ss_pred HHHHhhccCC-CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 36 DLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 36 dL~~lFs~fG-~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++.+-|..+| ++..|..+..++++.+-...||.-....+-.. .|+=+.+.|.++.|+-.
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 5566677777 67788888888888888889998776644333 45556677888888754
No 172
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=23.69 E-value=97 Score=23.87 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=16.1
Q ss_pred eeEEEEEEccHHHHHHHHHHh
Q 029812 62 TDVYFIKFRLFSNARFAKRKL 82 (187)
Q Consensus 62 rG~AFV~F~~~e~A~~Ai~~L 82 (187)
--|++++|.+.+++..|..++
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 458899999988888776554
No 173
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=23.10 E-value=60 Score=31.45 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=49.1
Q ss_pred eeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecCCcCChHHHHHHHHHHHHHHHHHh-hcCCCCCCcccccc-ccCC
Q 029812 62 TDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARL-NSGRSKVPNIHSSV-DLGE 139 (187)
Q Consensus 62 rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~~~e~~~d~r~K~~~rr~ev~~r~-~~~~~~~~~~~~~~-~~~~ 139 (187)
.++|+++|++.+.+..|++.++|..+.+..+++.-+..... .+.+. ....+....||..+ |.+-
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~r~~~~~Vt 128 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVG--------------SLRRRKSQPGPTEPPQQRTARDVVT 128 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccc--------------cccccccCCCcCccccchhhhhhcc
Confidence 46999999999999999999999999999988887711111 01111 22345666677776 5666
Q ss_pred CCCccCC
Q 029812 140 PSLVTAP 146 (187)
Q Consensus 140 ~~~~~~~ 146 (187)
|....|.
T Consensus 129 pl~~~Sy 135 (534)
T KOG2187|consen 129 PLEYLSY 135 (534)
T ss_pred eeeeecc
Confidence 6655543
No 174
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=22.32 E-value=2.6e+02 Score=26.44 Aligned_cols=63 Identities=22% Similarity=0.213 Sum_probs=41.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhc----cCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhC
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFA----TYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD 83 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs----~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~Ln 83 (187)
+..+-++.-......-+|..+|- .+|-|.++.+-..+. -+.+...++.|.+.++|..|+..+-
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 44454443222223457777776 899999986544332 2335678899999999999988754
No 175
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=20.26 E-value=2.5e+02 Score=17.91 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=37.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccH----HHHHHHHHH
Q 029812 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLF----SNARFAKRK 81 (187)
Q Consensus 22 ~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~----e~A~~Ai~~ 81 (187)
+|.|.||.-..+...+...+...-.|.++.+-.. .+.+-|.|... ++...+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4667777766677888888888888888877554 35678888754 344444443
No 176
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=20.05 E-value=1.6e+02 Score=21.45 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=19.8
Q ss_pred CeeEEEeccCCCCCCceeEEEEEEcc
Q 029812 46 DIEECKPMDAEDCDPFTDVYFIKFRL 71 (187)
Q Consensus 46 ~I~~V~il~dk~tg~~rG~AFV~F~~ 71 (187)
+|.+|+|-.-...|.-+|+|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46777766555558999999999987
Done!