Query 029812
Match_columns 187
No_of_seqs 199 out of 1228
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 05:57:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 6.4E-25 2.2E-29 161.1 11.0 80 18-97 17-96 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 1.2E-23 4.2E-28 157.3 11.8 81 18-98 4-84 (110)
3 2lxi_A RNA-binding protein 10; 99.9 2.9E-24 9.9E-29 155.0 6.5 78 20-97 1-80 (91)
4 3mdf_A Peptidyl-prolyl CIS-tra 99.9 7.1E-23 2.4E-27 143.3 10.0 81 17-97 4-84 (85)
5 3bs9_A Nucleolysin TIA-1 isofo 99.9 2E-22 7E-27 141.5 10.5 80 18-97 4-83 (87)
6 1whw_A Hypothetical protein ri 99.9 2.7E-22 9.4E-27 144.5 11.5 81 17-97 5-85 (99)
7 3md1_A Nuclear and cytoplasmic 99.9 3E-22 1E-26 139.5 11.2 78 20-97 1-78 (83)
8 2dnz_A Probable RNA-binding pr 99.9 2.9E-22 1E-26 143.1 11.4 80 18-97 3-82 (95)
9 2x1f_A MRNA 3'-END-processing 99.9 2.8E-22 9.5E-27 144.2 10.8 79 19-97 1-79 (96)
10 2e5h_A Zinc finger CCHC-type a 99.9 2.4E-22 8.1E-27 143.3 10.2 80 18-97 14-93 (94)
11 2lkz_A RNA-binding protein 5; 99.9 8.8E-23 3E-27 149.7 7.7 78 20-97 9-92 (95)
12 2do4_A Squamous cell carcinoma 99.9 5.4E-22 1.8E-26 143.4 11.5 83 14-97 11-93 (100)
13 2cq0_A Eukaryotic translation 99.9 3.7E-22 1.3E-26 145.0 10.5 80 18-97 13-92 (103)
14 4f25_A Polyadenylate-binding p 99.9 1.8E-22 6.3E-27 150.7 9.1 77 19-97 4-80 (115)
15 1x5t_A Splicing factor 3B subu 99.9 2.9E-22 1E-26 143.3 9.7 80 18-97 3-83 (96)
16 2dgs_A DAZ-associated protein 99.9 6.6E-22 2.3E-26 142.7 11.6 79 18-97 8-86 (99)
17 2cqc_A Arginine/serine-rich sp 99.9 2.9E-22 1E-26 142.8 9.6 80 18-97 13-92 (95)
18 2dnm_A SRP46 splicing factor; 99.9 5.6E-22 1.9E-26 144.1 11.2 80 18-97 11-90 (103)
19 1x5u_A Splicing factor 3B subu 99.9 5.3E-22 1.8E-26 144.3 11.0 81 17-97 12-92 (105)
20 2div_A TRNA selenocysteine ass 99.9 3.6E-22 1.2E-26 143.8 9.9 81 17-97 6-91 (99)
21 1x5s_A Cold-inducible RNA-bind 99.9 3.7E-22 1.3E-26 144.5 9.9 81 17-97 9-89 (102)
22 2cqb_A Peptidyl-prolyl CIS-tra 99.9 3.4E-22 1.1E-26 144.7 9.6 81 17-97 9-89 (102)
23 2la6_A RNA-binding protein FUS 99.9 6.4E-22 2.2E-26 143.0 11.0 81 17-97 10-98 (99)
24 3ns6_A Eukaryotic translation 99.9 1.1E-22 3.8E-27 148.5 6.8 79 19-97 5-90 (100)
25 1p27_B RNA-binding protein 8A; 99.9 5.8E-22 2E-26 144.4 10.4 80 18-97 21-100 (106)
26 4a8x_A RNA-binding protein wit 99.9 5.9E-22 2E-26 139.1 9.4 80 18-97 2-82 (88)
27 2cpf_A RNA binding motif prote 99.9 5.5E-22 1.9E-26 142.7 9.3 80 18-97 3-85 (98)
28 1x4h_A RNA-binding protein 28; 99.9 1.1E-21 3.7E-26 143.7 11.1 80 18-97 13-98 (111)
29 2cpz_A CUG triplet repeat RNA- 99.9 7.6E-22 2.6E-26 146.2 10.3 80 18-97 23-102 (115)
30 2khc_A Testis-specific RNP-typ 99.9 1.2E-21 3.9E-26 145.6 11.2 80 18-97 38-117 (118)
31 2dgo_A Cytotoxic granule-assoc 99.9 1.1E-21 3.9E-26 145.0 11.0 80 18-97 13-92 (115)
32 3p5t_L Cleavage and polyadenyl 99.9 1.6E-22 5.4E-27 144.4 6.1 77 21-97 2-80 (90)
33 2cph_A RNA binding motif prote 99.9 1.4E-21 4.8E-26 142.3 11.0 80 18-97 13-94 (107)
34 2dnh_A Bruno-like 5, RNA bindi 99.9 1.6E-21 5.5E-26 141.8 11.2 79 18-97 13-94 (105)
35 1oo0_B CG8781-PA, drosophila Y 99.9 1.1E-21 3.9E-26 144.0 10.5 80 18-97 24-103 (110)
36 2dgp_A Bruno-like 4, RNA bindi 99.9 9.8E-22 3.4E-26 143.2 9.9 80 18-97 11-93 (106)
37 3ulh_A THO complex subunit 4; 99.9 1.6E-21 5.4E-26 142.3 10.6 79 18-97 27-105 (107)
38 2ywk_A Putative RNA-binding pr 99.9 1.3E-21 4.4E-26 139.7 9.8 79 18-97 14-92 (95)
39 2d9p_A Polyadenylate-binding p 99.9 2E-21 6.9E-26 141.1 10.8 78 18-97 13-90 (103)
40 1p1t_A Cleavage stimulation fa 99.9 1E-21 3.4E-26 142.4 9.1 79 19-97 7-85 (104)
41 3s7r_A Heterogeneous nuclear r 99.9 2.5E-21 8.6E-26 136.4 10.8 79 18-97 9-87 (87)
42 2jrs_A RNA-binding protein 39; 99.9 1.4E-21 4.8E-26 144.9 9.7 81 17-97 23-103 (108)
43 3n9u_C Cleavage and polyadenyl 99.9 3.2E-21 1.1E-25 152.5 12.3 79 19-97 54-134 (156)
44 2cq4_A RNA binding motif prote 99.9 1.3E-21 4.5E-26 144.7 9.2 78 19-97 24-101 (114)
45 1s79_A Lupus LA protein; RRM, 99.9 1.2E-21 4.1E-26 145.1 8.7 82 14-97 5-86 (103)
46 2mss_A Protein (musashi1); RNA 99.9 8.6E-22 2.9E-26 135.3 7.3 75 22-97 1-75 (75)
47 1u6f_A Tcubp1, RNA-binding pro 99.9 3E-21 1E-25 147.0 11.0 81 17-97 39-119 (139)
48 1x4e_A RNA binding motif, sing 99.9 3.3E-22 1.1E-26 140.4 5.0 80 18-97 3-82 (85)
49 3ucg_A Polyadenylate-binding p 99.9 2.9E-21 1E-25 136.1 9.9 78 19-97 5-82 (89)
50 3ex7_B RNA-binding protein 8A; 99.9 2.4E-21 8.2E-26 145.4 9.9 80 18-97 20-99 (126)
51 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 2.9E-21 9.8E-26 146.3 10.4 80 18-97 61-140 (140)
52 2fy1_A RNA-binding motif prote 99.9 2.9E-21 9.9E-26 144.8 10.2 79 18-97 5-83 (116)
53 2ek1_A RNA-binding protein 12; 99.9 1.2E-21 4E-26 139.9 7.6 79 19-97 14-92 (95)
54 2cqp_A RNA-binding protein 12; 99.9 1.8E-21 6.1E-26 140.0 8.6 80 18-97 13-92 (98)
55 2cpe_A RNA-binding protein EWS 99.9 2.5E-21 8.6E-26 142.7 9.5 80 18-97 13-100 (113)
56 2dgv_A HnRNP M, heterogeneous 99.9 3.7E-21 1.3E-25 136.6 10.0 78 18-97 6-83 (92)
57 2dng_A Eukaryotic translation 99.8 4.7E-21 1.6E-25 139.4 10.6 78 18-97 13-90 (103)
58 2kxn_B Transformer-2 protein h 99.8 2.1E-21 7.3E-26 148.6 9.2 82 16-97 42-123 (129)
59 2dhg_A TRNA selenocysteine ass 99.8 2.7E-21 9.1E-26 140.4 9.0 79 18-97 7-87 (104)
60 2cqd_A RNA-binding region cont 99.8 4.8E-21 1.6E-25 142.1 10.0 79 18-97 15-93 (116)
61 3r27_A HnRNP L, heterogeneous 99.8 4.1E-21 1.4E-25 143.4 9.6 77 15-97 16-94 (100)
62 2dis_A Unnamed protein product 99.8 3.7E-21 1.2E-25 140.8 9.1 81 17-97 5-89 (109)
63 1wi8_A EIF-4B, eukaryotic tran 99.8 5.7E-21 2E-25 139.1 10.1 78 18-97 13-91 (104)
64 2dh8_A DAZ-associated protein 99.8 2.9E-21 1E-25 140.7 8.5 80 17-97 13-92 (105)
65 2cqi_A Nucleolysin TIAR; RNA r 99.8 6E-21 2.1E-25 138.6 10.1 78 18-97 13-90 (103)
66 2do0_A HnRNP M, heterogeneous 99.8 7.8E-21 2.7E-25 140.0 10.8 79 18-97 13-91 (114)
67 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.8E-21 6.1E-26 133.8 6.8 76 21-97 1-76 (77)
68 2cq3_A RNA-binding protein 9; 99.8 1.5E-20 5.1E-25 136.5 12.0 78 18-97 13-90 (103)
69 2kn4_A Immunoglobulin G-bindin 99.8 9.7E-21 3.3E-25 146.8 11.6 80 18-97 68-147 (158)
70 2nlw_A Eukaryotic translation 99.8 5.5E-21 1.9E-25 140.4 9.7 81 18-100 13-100 (105)
71 2m2b_A RNA-binding protein 10; 99.8 1.5E-21 5.2E-26 148.6 6.7 79 18-97 21-105 (131)
72 2krb_A Eukaryotic translation 99.8 1.8E-21 6.3E-26 136.1 6.5 74 20-95 1-81 (81)
73 2dgx_A KIAA0430 protein; RRM d 99.8 5.6E-21 1.9E-25 138.0 9.3 77 18-97 7-87 (96)
74 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.2E-20 4.1E-25 146.8 11.7 80 18-97 37-116 (156)
75 2kt5_A RNA and export factor-b 99.8 7.5E-21 2.6E-25 142.8 10.2 80 17-97 32-111 (124)
76 2ki2_A SS-DNA binding protein 99.8 1.2E-21 4E-26 138.9 5.4 76 21-97 2-77 (90)
77 2rs2_A Musashi-1, RNA-binding 99.8 8E-21 2.7E-25 140.8 10.0 84 13-97 18-101 (109)
78 2cpi_A CCR4-NOT transcription 99.8 5.4E-21 1.8E-25 141.7 8.8 79 19-97 14-98 (111)
79 1x5o_A RNA binding motif, sing 99.8 1.4E-20 4.9E-25 138.8 10.5 79 18-97 23-109 (114)
80 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.3E-21 1.8E-25 139.1 8.0 79 17-97 16-95 (100)
81 1x4d_A Matrin 3; structural ge 99.8 4.7E-21 1.6E-25 142.8 7.8 75 18-98 13-90 (102)
82 1sjq_A Polypyrimidine tract-bi 99.8 6.1E-21 2.1E-25 143.5 8.4 75 17-97 13-89 (105)
83 1wel_A RNA-binding protein 12; 99.8 8.7E-21 3E-25 142.9 9.0 79 18-97 23-101 (124)
84 2dgw_A Probable RNA-binding pr 99.8 2.4E-20 8.4E-25 132.5 10.8 77 18-97 8-84 (91)
85 1x4b_A Heterogeneous nuclear r 99.8 9.3E-21 3.2E-25 140.5 8.9 78 19-97 26-103 (116)
86 3lqv_A PRE-mRNA branch site pr 99.8 1.9E-20 6.4E-25 138.4 10.6 77 18-97 6-82 (115)
87 2a3j_A U1 small nuclear ribonu 99.8 7.3E-21 2.5E-25 146.4 8.6 77 18-97 27-107 (127)
88 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.1E-20 3.7E-25 149.0 9.5 80 18-97 70-149 (165)
89 2cqg_A TDP-43, TAR DNA-binding 99.8 3E-20 1E-24 134.9 10.9 78 18-97 13-90 (103)
90 1x4a_A Splicing factor, argini 99.8 2.9E-20 9.8E-25 136.5 10.8 78 17-97 19-96 (109)
91 1why_A Hypothetical protein ri 99.8 2.8E-20 9.7E-25 133.9 10.4 78 14-97 11-90 (97)
92 2jwn_A Embryonic polyadenylate 99.8 1.4E-20 4.8E-25 140.8 8.9 78 19-97 35-112 (124)
93 2cpx_A Hypothetical protein FL 99.8 5.6E-21 1.9E-25 141.0 6.5 86 12-97 17-102 (115)
94 2cq1_A PTB-like protein L; RRM 99.8 3.5E-20 1.2E-24 137.3 10.6 74 18-97 13-88 (101)
95 1iqt_A AUF1, heterogeneous nuc 99.8 5.9E-21 2E-25 130.8 5.8 75 22-97 1-75 (75)
96 2lea_A Serine/arginine-rich sp 99.8 8.3E-21 2.8E-25 146.2 7.1 80 18-97 45-124 (135)
97 3q2s_C Cleavage and polyadenyl 99.8 1.5E-20 5.2E-25 156.7 9.0 84 14-97 62-147 (229)
98 2cpy_A RNA-binding protein 12; 99.8 1.5E-20 5.1E-25 139.9 7.9 80 16-97 11-91 (114)
99 1wex_A Hypothetical protein (r 99.8 2.7E-20 9.1E-25 138.5 9.1 75 17-97 12-88 (104)
100 1nu4_A U1A RNA binding domain; 99.8 1.5E-20 5E-25 134.7 7.4 77 18-97 6-86 (97)
101 2fc9_A NCL protein; structure 99.8 5.3E-20 1.8E-24 133.1 10.1 76 18-97 13-88 (101)
102 2err_A Ataxin-2-binding protei 99.8 3.2E-20 1.1E-24 137.4 9.1 78 18-97 27-104 (109)
103 2ad9_A Polypyrimidine tract-bi 99.8 3.4E-20 1.2E-24 142.1 9.0 75 17-97 28-104 (119)
104 3md3_A Nuclear and cytoplasmic 99.8 7.8E-20 2.7E-24 139.3 10.9 80 18-97 85-164 (166)
105 2ytc_A PRE-mRNA-splicing facto 99.8 4.7E-20 1.6E-24 129.1 8.9 74 18-97 10-84 (85)
106 1fxl_A Paraneoplastic encephal 99.8 8.4E-20 2.9E-24 139.2 10.9 78 20-97 2-79 (167)
107 2wbr_A GW182, gawky, LD47780P; 99.8 3.7E-20 1.3E-24 136.1 8.5 73 19-97 6-78 (89)
108 3egn_A RNA-binding protein 40; 99.8 9.4E-21 3.2E-25 145.4 5.4 87 12-98 37-128 (143)
109 1wg5_A Heterogeneous nuclear r 99.8 6.9E-20 2.3E-24 134.3 9.8 78 18-97 13-91 (104)
110 2dnq_A RNA-binding protein 4B; 99.8 8.5E-20 2.9E-24 129.7 9.9 73 17-97 5-77 (90)
111 2cpj_A Non-POU domain-containi 99.8 7.3E-20 2.5E-24 132.2 9.6 74 18-97 13-86 (99)
112 2db1_A Heterogeneous nuclear r 99.8 4.6E-20 1.6E-24 138.6 8.5 79 17-97 14-95 (118)
113 4f02_A Polyadenylate-binding p 99.8 9.2E-20 3.1E-24 148.1 10.8 81 18-98 13-93 (213)
114 1b7f_A Protein (SXL-lethal pro 99.8 7.3E-20 2.5E-24 140.3 9.6 79 19-97 2-80 (168)
115 1wez_A HnRNP H', FTP-3, hetero 99.8 7E-20 2.4E-24 134.8 8.9 77 18-97 13-89 (102)
116 2g4b_A Splicing factor U2AF 65 99.8 1.1E-19 3.7E-24 140.2 10.4 80 18-97 92-171 (172)
117 1fj7_A Nucleolin RBD1, protein 99.8 9E-21 3.1E-25 137.2 4.0 78 18-97 15-92 (101)
118 2xnq_A Nuclear polyadenylated 99.8 1.6E-19 5.5E-24 131.2 10.4 77 13-97 15-92 (97)
119 1whx_A Hypothetical protein ri 99.8 6.7E-20 2.3E-24 136.4 8.4 74 19-98 9-82 (111)
120 2fc8_A NCL protein; structure 99.8 1.6E-19 5.3E-24 130.6 10.1 77 18-97 13-89 (102)
121 2j8a_A Histone-lysine N-methyl 99.8 1.3E-19 4.6E-24 142.1 9.9 106 21-127 3-122 (136)
122 1x4g_A Nucleolysin TIAR; struc 99.8 1.4E-19 4.9E-24 132.9 9.2 75 17-97 22-96 (109)
123 1x4c_A Splicing factor, argini 99.8 2.9E-19 9.9E-24 131.5 10.7 73 18-97 13-90 (108)
124 2dgt_A RNA-binding protein 30; 99.8 3E-19 1E-23 127.3 10.5 72 18-97 8-79 (92)
125 1x4f_A Matrin 3; structural ge 99.8 5.9E-20 2E-24 139.4 7.0 76 17-98 22-100 (112)
126 2lmi_A GRSF-1, G-rich sequence 99.8 4.8E-20 1.7E-24 135.7 6.3 79 17-97 8-89 (107)
127 2hgl_A HNRPF protein, heteroge 99.8 9E-20 3.1E-24 142.0 8.0 78 18-97 42-122 (136)
128 2xs2_A Deleted in azoospermia- 99.8 7.5E-20 2.6E-24 132.5 7.1 76 19-97 8-83 (102)
129 2la4_A Nuclear and cytoplasmic 99.8 1E-19 3.5E-24 131.6 7.6 73 19-97 26-98 (101)
130 2jvo_A Nucleolar protein 3; nu 99.8 2.1E-19 7.2E-24 133.3 9.4 75 15-97 26-100 (108)
131 2f3j_A RNA and export factor b 99.8 1.8E-19 6.3E-24 144.9 9.7 79 18-97 86-164 (177)
132 2lcw_A RNA-binding protein FUS 99.7 4.1E-21 1.4E-25 142.7 0.0 80 18-97 5-92 (116)
133 2qfj_A FBP-interacting repress 99.8 3.4E-19 1.2E-23 142.0 11.0 80 18-97 123-202 (216)
134 2kvi_A Nuclear polyadenylated 99.8 1.9E-19 6.6E-24 129.7 8.6 73 17-97 7-80 (96)
135 1fjc_A Nucleolin RBD2, protein 99.8 9.2E-20 3.1E-24 130.5 6.9 75 18-97 14-88 (96)
136 2e5j_A Methenyltetrahydrofolat 99.8 1.8E-19 6.3E-24 129.8 8.4 75 18-97 17-91 (97)
137 2hvz_A Splicing factor, argini 99.8 9.3E-20 3.2E-24 131.8 6.8 72 21-97 1-72 (101)
138 2dnp_A RNA-binding protein 14; 99.8 3.6E-19 1.2E-23 126.4 9.7 72 18-97 7-78 (90)
139 1b7f_A Protein (SXL-lethal pro 99.8 4.3E-19 1.5E-23 136.0 10.8 80 18-97 87-168 (168)
140 2jvr_A Nucleolar protein 3; RN 99.8 2.1E-19 7.3E-24 135.4 8.9 76 18-97 26-102 (111)
141 2i2y_A Fusion protein consists 99.8 3.9E-19 1.3E-23 137.3 10.3 76 17-97 70-145 (150)
142 2yh0_A Splicing factor U2AF 65 99.8 4.9E-19 1.7E-23 139.3 10.9 80 18-97 112-191 (198)
143 2dgu_A Heterogeneous nuclear r 99.8 5.8E-19 2E-23 128.5 10.0 72 18-97 9-80 (103)
144 2cjk_A Nuclear polyadenylated 99.8 2.3E-19 7.8E-24 137.7 8.1 78 19-97 86-163 (167)
145 4f02_A Polyadenylate-binding p 99.8 6.6E-19 2.3E-23 143.0 10.7 77 19-97 102-178 (213)
146 1fxl_A Paraneoplastic encephal 99.8 7.8E-19 2.7E-23 133.8 10.5 79 19-97 87-167 (167)
147 3tyt_A Heterogeneous nuclear r 99.8 5.5E-19 1.9E-23 144.6 10.0 75 18-97 2-77 (205)
148 1wg1_A KIAA1579 protein, homol 99.8 4.2E-19 1.4E-23 126.1 8.1 74 19-99 4-77 (88)
149 2qfj_A FBP-interacting repress 99.8 2.9E-19 9.9E-24 142.4 8.1 80 19-98 27-106 (216)
150 1l3k_A Heterogeneous nuclear r 99.8 6.2E-19 2.1E-23 138.5 9.8 79 18-97 11-89 (196)
151 2cpd_A Apobec-1 stimulating pr 99.8 1.9E-18 6.5E-23 124.7 11.4 75 15-97 10-86 (99)
152 1wf1_A RNA-binding protein RAL 99.8 4.9E-19 1.7E-23 130.3 8.4 71 19-97 26-97 (110)
153 2e44_A Insulin-like growth fac 99.8 4.9E-19 1.7E-23 126.7 8.1 75 19-97 14-89 (96)
154 1l3k_A Heterogeneous nuclear r 99.8 9.9E-19 3.4E-23 137.4 10.6 78 19-97 103-180 (196)
155 2pe8_A Splicing factor 45; RRM 99.8 1.6E-18 5.3E-23 129.1 10.8 81 17-97 5-91 (105)
156 2cqh_A IGF-II mRNA-binding pro 99.8 4.2E-19 1.4E-23 126.6 7.3 73 18-97 6-80 (93)
157 2dnn_A RNA-binding protein 12; 99.8 1.1E-18 3.9E-23 130.8 9.8 76 19-97 15-90 (109)
158 3nmr_A Cugbp ELAV-like family 99.8 1.1E-18 3.6E-23 134.3 9.8 78 19-97 94-174 (175)
159 2diu_A KIAA0430 protein; struc 99.8 7.6E-19 2.6E-23 130.7 8.5 71 18-98 6-82 (96)
160 2cq2_A Hypothetical protein LO 99.8 5.9E-19 2E-23 134.5 7.9 75 17-97 22-103 (114)
161 3md3_A Nuclear and cytoplasmic 99.8 1.1E-18 3.6E-23 133.0 9.3 76 21-97 1-76 (166)
162 2dha_A FLJ20171 protein; RRM d 99.8 8.2E-19 2.8E-23 134.4 8.2 79 17-97 20-102 (123)
163 2e5g_A U6 snRNA-specific termi 99.8 1.4E-18 4.7E-23 124.6 8.9 74 18-97 6-79 (94)
164 3nmr_A Cugbp ELAV-like family 99.8 1.5E-18 5.2E-23 133.5 9.4 79 19-97 2-85 (175)
165 3pgw_S U1-70K; protein-RNA com 99.8 1.7E-18 5.8E-23 157.0 10.9 80 18-97 100-179 (437)
166 2hgn_A Heterogeneous nuclear r 99.8 4.4E-19 1.5E-23 138.6 5.7 78 18-98 44-121 (139)
167 3zzy_A Polypyrimidine tract-bi 99.8 2.4E-18 8.1E-23 133.9 9.5 72 21-97 29-103 (130)
168 1x5p_A Negative elongation fac 99.8 4.3E-18 1.5E-22 122.6 9.9 72 18-97 13-84 (97)
169 2cjk_A Nuclear polyadenylated 99.8 1.8E-18 6.2E-23 132.7 8.3 77 19-97 2-78 (167)
170 3beg_B Splicing factor, argini 99.8 2.1E-18 7.2E-23 128.8 8.2 72 19-97 15-91 (115)
171 3d2w_A TAR DNA-binding protein 99.8 4.2E-18 1.4E-22 122.2 9.4 71 18-97 9-81 (89)
172 2dnl_A Cytoplasmic polyadenyla 99.7 2.6E-18 8.9E-23 127.7 8.3 78 18-98 6-86 (114)
173 2e5i_A Heterogeneous nuclear r 99.7 4.9E-18 1.7E-22 130.8 9.5 73 19-97 22-99 (124)
174 2hgm_A HNRPF protein, heteroge 99.7 2.6E-18 8.9E-23 132.4 7.9 77 18-97 40-118 (126)
175 2hzc_A Splicing factor U2AF 65 99.7 4E-18 1.4E-22 119.4 7.9 72 18-96 4-86 (87)
176 1sjr_A Polypyrimidine tract-bi 99.7 4.4E-18 1.5E-22 137.3 9.2 73 21-97 47-121 (164)
177 3pgw_A U1-A; protein-RNA compl 99.7 6.5E-18 2.2E-22 141.0 10.5 77 18-97 7-87 (282)
178 3smz_A Protein raver-1, ribonu 99.7 1.8E-17 6E-22 138.5 11.5 79 18-97 182-261 (284)
179 2bz2_A Negative elongation fac 99.7 1.2E-17 4.2E-22 126.5 9.3 73 17-97 36-108 (121)
180 1fje_B Nucleolin RBD12, protei 99.7 1E-17 3.5E-22 129.9 8.4 74 19-97 98-171 (175)
181 2ghp_A U4/U6 snRNA-associated 99.7 1.7E-17 5.9E-22 139.0 9.9 79 18-97 208-288 (292)
182 1wf0_A TDP-43, TAR DNA-binding 99.7 6.5E-18 2.2E-22 119.5 6.2 71 18-97 3-75 (88)
183 3v4m_A Splicing factor U2AF 65 99.7 2.3E-17 8E-22 122.6 9.1 81 18-98 3-95 (105)
184 3smz_A Protein raver-1, ribonu 99.7 4.4E-17 1.5E-21 136.1 11.2 81 17-97 92-172 (284)
185 2voo_A Lupus LA protein; RNA-b 99.7 4.2E-17 1.4E-21 132.5 10.5 79 19-99 108-186 (193)
186 2adc_A Polypyrimidine tract-bi 99.7 2.6E-17 9E-22 134.9 9.2 75 18-97 32-107 (229)
187 3pgw_A U1-A; protein-RNA compl 99.7 5.1E-17 1.7E-21 135.6 10.7 77 16-97 203-280 (282)
188 3u1l_A PRE-mRNA-splicing facto 99.7 2.3E-17 7.8E-22 140.0 8.2 75 17-97 131-226 (240)
189 1qm9_A Polypyrimidine tract-bi 99.7 2.4E-17 8.4E-22 130.7 7.8 74 19-97 2-76 (198)
190 2dit_A HIV TAT specific factor 99.7 1.6E-16 5.3E-21 117.9 10.3 78 16-97 11-99 (112)
191 1jmt_A Splicing factor U2AF 35 99.7 1.7E-17 5.7E-22 123.0 4.4 73 25-98 20-104 (104)
192 3tyt_A Heterogeneous nuclear r 99.7 7.6E-17 2.6E-21 131.8 8.6 78 18-97 121-204 (205)
193 3ue2_A Poly(U)-binding-splicin 99.7 1E-16 3.5E-21 122.0 8.6 81 18-98 18-107 (118)
194 1fje_B Nucleolin RBD12, protei 99.7 1.1E-17 3.8E-22 129.7 2.9 80 17-98 10-89 (175)
195 1qm9_A Polypyrimidine tract-bi 99.7 1.8E-16 6E-21 125.7 9.0 75 18-97 118-194 (198)
196 3sde_A Paraspeckle component 1 99.7 2.2E-16 7.5E-21 131.9 8.8 74 18-97 20-93 (261)
197 3sde_A Paraspeckle component 1 99.7 4.3E-16 1.5E-20 130.2 10.1 80 17-97 93-176 (261)
198 2adc_A Polypyrimidine tract-bi 99.6 4.8E-16 1.6E-20 127.4 9.9 75 18-97 149-225 (229)
199 2ghp_A U4/U6 snRNA-associated 99.6 3.6E-16 1.2E-20 131.0 9.0 79 18-97 115-194 (292)
200 2g4b_A Splicing factor U2AF 65 99.6 5.7E-16 2E-20 119.2 8.5 73 19-98 3-86 (172)
201 2yh0_A Splicing factor U2AF 65 99.6 8.2E-16 2.8E-20 120.8 8.0 72 19-97 3-85 (198)
202 3tht_A Alkylated DNA repair pr 99.6 3E-15 1E-19 132.8 9.7 80 12-97 10-96 (345)
203 3s6e_A RNA-binding protein 39; 99.6 1.2E-14 4.1E-19 110.0 9.7 77 18-98 5-91 (114)
204 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.6E-14 9.1E-19 105.8 9.3 71 20-97 10-87 (100)
205 3dxb_A Thioredoxin N-terminall 99.3 3.3E-12 1.1E-16 104.0 8.8 79 20-98 124-211 (222)
206 1owx_A Lupus LA protein, SS-B, 99.3 2.9E-11 9.8E-16 93.0 13.4 74 18-97 16-93 (121)
207 2dnr_A Synaptojanin-1; RRM dom 99.3 1.1E-11 3.8E-16 91.2 7.8 72 17-97 4-83 (91)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 1.9E-10 6.5E-15 85.2 6.3 72 17-97 12-92 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.4 7E-07 2.4E-11 68.0 8.3 71 20-96 21-96 (117)
210 1wey_A Calcipressin 1; structu 98.3 1.7E-06 5.7E-11 64.9 6.7 72 20-97 5-81 (104)
211 1uw4_A UPF3X; nonsense mediate 98.1 2.8E-05 9.6E-10 56.8 9.8 80 21-100 2-88 (91)
212 1whv_A Poly(A)-specific ribonu 97.8 6.8E-05 2.3E-09 55.8 6.9 54 21-83 17-70 (100)
213 2l08_A Regulator of nonsense t 97.6 0.00028 9.7E-09 52.1 7.7 80 20-99 9-95 (97)
214 3ctr_A Poly(A)-specific ribonu 97.4 0.00024 8.2E-09 52.9 5.7 53 22-83 8-60 (101)
215 2dhx_A Poly (ADP-ribose) polym 97.4 0.0013 4.4E-08 49.2 9.4 72 19-99 7-83 (104)
216 1wwh_A Nucleoporin 35, nucleop 97.3 0.001 3.5E-08 50.8 7.7 70 20-97 24-94 (119)
217 2kn4_A Immunoglobulin G-bindin 96.7 0.0036 1.2E-07 47.4 6.4 34 49-84 2-35 (158)
218 3p3d_A Nucleoporin 53; structu 96.7 0.0034 1.2E-07 48.7 6.2 77 19-97 6-96 (132)
219 2i2y_A Fusion protein consists 96.3 0.0012 4.1E-08 49.9 1.4 38 59-97 10-48 (150)
220 3pq1_A Poly(A) RNA polymerase; 96.2 0.0028 9.6E-08 58.1 3.6 54 21-80 54-107 (464)
221 3d45_A Poly(A)-specific ribonu 93.6 0.17 5.7E-06 46.5 7.5 55 20-83 440-494 (507)
222 3pgw_S U1-70K; protein-RNA com 77.7 0.32 1.1E-05 43.5 -1.0 41 36-76 8-55 (437)
223 2g0c_A ATP-dependent RNA helic 48.5 23 0.00078 23.2 4.1 57 32-97 13-74 (76)
224 3fry_A Probable copper-exporti 37.5 74 0.0025 19.8 6.2 55 21-82 7-61 (73)
225 4eyt_A Telomerase associated p 37.2 1.2E+02 0.0041 22.1 8.1 68 19-96 11-78 (129)
226 2lea_A Serine/arginine-rich sp 35.4 19 0.00064 26.3 2.1 28 63-90 5-32 (135)
227 3lpe_A Putative transcription 34.9 77 0.0026 21.9 5.2 39 47-90 40-79 (92)
228 4e8u_A Putative uncharacterize 31.3 94 0.0032 24.6 5.7 48 22-72 14-72 (172)
229 2yue_A Protein neuralized; str 31.2 7.6 0.00026 30.5 -0.7 38 14-54 124-161 (168)
230 4bby_A Alkyldihydroxyacetoneph 26.7 52 0.0018 30.6 4.0 55 27-82 350-408 (658)
231 1wvf_A 4-cresol dehydrogenase 25.4 53 0.0018 29.4 3.7 43 36-79 217-261 (520)
232 2i9x_A Putative septation prot 21.3 95 0.0032 21.8 3.6 26 46-71 5-30 (87)
233 4a4j_A Pacszia, cation-transpo 20.4 1.5E+02 0.0051 17.7 4.7 54 22-81 5-61 (69)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=6.4e-25 Score=161.09 Aligned_cols=80 Identities=25% Similarity=0.334 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
-++++|||+|||+.+++++|+++|++||+|.+|+++.++.+|.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=157.29 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|.+|+|+.|+.|++++|||||+|.+.++|..|++.|||+.|.|+.|+|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 029812 98 S 98 (187)
Q Consensus 98 ~ 98 (187)
+
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 3
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.90 E-value=2.9e-24 Score=154.96 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=74.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCC-CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhC-CceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD-EFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG-~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~Ln-G~~f~G~~L~V~~A 97 (187)
|++|||+|||+.+++++|+++|++|| +|.+|+|++++.||.++|||||+|.+.++|..|++.|+ +..+.|++|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57899999999999999999999999 89999999999999999999999999999999999874 66799999999999
No 4
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.89 E-value=7.1e-23 Score=143.27 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=78.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+.|++|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 8
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=141.50 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..+.|+.|+|.||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
No 6
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.7e-22 Score=144.47 Aligned_cols=81 Identities=28% Similarity=0.302 Sum_probs=78.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 85 a 85 (99)
T 1whw_A 85 S 85 (99)
T ss_dssp C
T ss_pred c
Confidence 9
No 7
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=3e-22 Score=139.52 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=76.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+.+|||+|||..+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..+.|++|+|+||
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 358999999999999999999999999999999999999999999999999999999999999999999999999999
No 8
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=143.07 Aligned_cols=80 Identities=25% Similarity=0.255 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
No 9
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.88 E-value=2.8e-22 Score=144.22 Aligned_cols=79 Identities=23% Similarity=0.305 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..+.|+.|+|.||
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999999
No 10
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=143.29 Aligned_cols=80 Identities=25% Similarity=0.360 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
No 11
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=8.8e-23 Score=149.70 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCC--eeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCc----eeCCceeE
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGD--IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF----VFLGNRLK 93 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~--I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~----~f~G~~L~ 93 (187)
=.+|||+|||+.+|+++|+++|++||. |.+|++++|+.||.+||||||+|.+.++|..|++.|||. .+.|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 378999999999999999999999995 679999999999999999999999999999999999997 48999999
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|+||
T Consensus 89 V~~A 92 (95)
T 2lkz_A 89 VDFA 92 (95)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9999
No 12
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5.4e-22 Score=143.42 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=78.7
Q ss_pred eeccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 14 yt~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
+....++++|||+|||..+++++|+++|++||+|.+|.++.++ +|.++|||||+|.+.++|..|++.|||..|.|+.|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3444567999999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|.||
T Consensus 90 v~~a 93 (100)
T 2do4_A 90 VAIS 93 (100)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9999
No 13
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.7e-22 Score=144.98 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
No 14
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1.8e-22 Score=150.74 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+++|||+|||+.+++++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|..|++.|||+.|.|+.|+|.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999885 458999999999999999999999999999999999999
No 15
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.9e-22 Score=143.32 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEE-EeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC-KPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V-~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
.++++|||+|||..+++++|+++|++||.|.+| +++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 83 a 83 (96)
T 1x5t_A 83 A 83 (96)
T ss_dssp S
T ss_pred e
Confidence 9
No 16
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=6.6e-22 Score=142.71 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++ |||..|.|+.|+|.+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999998 9999999999999999
No 17
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.9e-22 Score=142.79 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
No 18
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=5.6e-22 Score=144.06 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
No 19
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.3e-22 Score=144.35 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=78.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 92 a 92 (105)
T 1x5u_A 92 A 92 (105)
T ss_dssp T
T ss_pred C
Confidence 9
No 20
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=3.6e-22 Score=143.84 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=78.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCee-EEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCce----
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIE-ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR---- 91 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~-~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~---- 91 (187)
..++++|||+|||+.+++++|+++|++||+|. +|+++.++.++.++|||||+|.+.++|..|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35689999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eEEEec
Q 029812 92 LKVSYA 97 (187)
Q Consensus 92 L~V~~A 97 (187)
|+|+||
T Consensus 86 l~v~~a 91 (99)
T 2div_A 86 FKLNYA 91 (99)
T ss_dssp CCEEET
T ss_pred EEEeec
Confidence 999999
No 21
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.7e-22 Score=144.51 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=78.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 89 a 89 (102)
T 1x5s_A 89 A 89 (102)
T ss_dssp E
T ss_pred C
Confidence 9
No 22
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.4e-22 Score=144.73 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=78.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 89 a 89 (102)
T 2cqb_A 89 A 89 (102)
T ss_dssp C
T ss_pred C
Confidence 9
No 23
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=6.4e-22 Score=143.04 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=78.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeE--------EEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--------CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~--------V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~ 88 (187)
....++|||+|||..+++++|+++|++||.|.+ |+++.++.+|.++|||||+|.+.++|..|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456799999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CceeEEEec
Q 029812 89 GNRLKVSYA 97 (187)
Q Consensus 89 G~~L~V~~A 97 (187)
|+.|+|.+|
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999999998
No 24
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.87 E-value=1.1e-22 Score=148.54 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC-ce
Q 029812 19 ESRYLIVRNVPS------LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG-NR 91 (187)
Q Consensus 19 es~~LyV~NLP~------~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G-~~ 91 (187)
.+++|||+|||. .+++++|+++|++||+|.+|+|+.++.||.++|||||+|.+.++|..|++.|||..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eEEEec
Q 029812 92 LKVSYA 97 (187)
Q Consensus 92 L~V~~A 97 (187)
|+|.+|
T Consensus 85 l~V~~a 90 (100)
T 3ns6_A 85 LFLYTM 90 (100)
T ss_dssp CEEEES
T ss_pred EEEEEC
Confidence 999999
No 25
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.8e-22 Score=144.38 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|+|+||
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
No 26
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=5.9e-22 Score=139.11 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCC-ceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP-FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~-~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
.++++|||+|||..+++++|+++|++||.|.+|.++.++.++. ++|||||+|.+.++|..|++.|||..+.|+.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3578999999999999999999999999999999999987766 899999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
+
T Consensus 82 a 82 (88)
T 4a8x_A 82 V 82 (88)
T ss_dssp E
T ss_pred C
Confidence 9
No 27
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=5.5e-22 Score=142.65 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCC---CCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAED---CDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~---tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V 94 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++. |+.++|||||+|.+.++|..|++.|||..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998876 6799999999999999999999999999999999999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
.+|
T Consensus 83 ~~a 85 (98)
T 2cpf_A 83 RIS 85 (98)
T ss_dssp ECS
T ss_pred EEc
Confidence 999
No 28
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=143.72 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhC------CceeCCce
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD------EFVFLGNR 91 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~Ln------G~~f~G~~ 91 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.|+.++.++.++|||||+|.+.++|..|++.|| |..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 567899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eEEEec
Q 029812 92 LKVSYA 97 (187)
Q Consensus 92 L~V~~A 97 (187)
|+|.||
T Consensus 93 l~v~~a 98 (111)
T 1x4h_A 93 LKVDLA 98 (111)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999999
No 29
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=7.6e-22 Score=146.19 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
No 30
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=1.2e-21 Score=145.56 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||+|.+|+++.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|+|+|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999997
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=1.1e-21 Score=145.01 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
No 32
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=1.6e-22 Score=144.41 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCC--CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYG--DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG--~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+|||+|||+.+++++|+++|++|| .|.+|+++.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999999999 9999999999999999999999999999999999999999999999999999
No 33
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=142.29 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccC-CCCCCceeEEEEEEccHHHHHHHHHHh-CCceeCCceeEEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDA-EDCDPFTDVYFIKFRLFSNARFAKRKL-DEFVFLGNRLKVS 95 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~d-k~tg~~rG~AFV~F~~~e~A~~Ai~~L-nG~~f~G~~L~V~ 95 (187)
.++++|||+|||..+++++|+++|++||+|.+|.++.+ +.++.++|||||+|.+.++|..|++.| ||..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 46789999999999999999999999999999999999 789999999999999999999999999 9999999999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
||
T Consensus 93 ~a 94 (107)
T 2cph_A 93 WA 94 (107)
T ss_dssp EC
T ss_pred eC
Confidence 99
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.86 E-value=1.6e-21 Score=141.81 Aligned_cols=79 Identities=25% Similarity=0.389 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC---ceeEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG---NRLKV 94 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G---~~L~V 94 (187)
.++++|||+|||..+++++|+++|++||.|.+|.|+.++ +|.++|||||+|.+.++|..|++.|||..+.| ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 467999999999999999999999999999999999997 79999999999999999999999999999998 99999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
.||
T Consensus 92 ~~a 94 (105)
T 2dnh_A 92 KFA 94 (105)
T ss_dssp EES
T ss_pred EEC
Confidence 999
No 35
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.86 E-value=1.1e-21 Score=143.96 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|+|+||
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
No 36
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=9.8e-22 Score=143.16 Aligned_cols=80 Identities=20% Similarity=0.215 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee---CCceeEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF---LGNRLKV 94 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f---~G~~L~V 94 (187)
.++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
.||
T Consensus 91 ~~a 93 (106)
T 2dgp_A 91 KPA 93 (106)
T ss_dssp EEC
T ss_pred EEC
Confidence 999
No 37
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.86 E-value=1.6e-21 Score=142.28 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||.|.+|.++.++ +|.++|||||+|.+.++|..|++.|||..|.|+.|+|+||
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457899999999999999999999999999999999998 9999999999999999999999999999999999999998
No 38
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=139.72 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++. +.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4568999999999999999999999999999999999975 999999999999999999999999999999999999998
No 39
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=141.09 Aligned_cols=78 Identities=22% Similarity=0.181 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.++.+ ++.++|||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 46789999999999999999999999999999999988 8999999999999999999999999999999999999999
No 40
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-21 Score=142.40 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999999999
No 41
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=2.5e-21 Score=136.39 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|++ ++|..+.|+.|+|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 467899999999999999999999999999999999999999999999999999999999996 5889999999999986
No 42
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=144.89 Aligned_cols=81 Identities=23% Similarity=0.226 Sum_probs=78.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..++++|||+|||..+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 103 a 103 (108)
T 2jrs_A 103 V 103 (108)
T ss_dssp S
T ss_pred c
Confidence 9
No 43
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=152.49 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCC--CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYG--DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG--~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
+.++|||+|||+.+++++|+++|++|| .|.+|+++.|+.+|.++|||||+|.+.++|..||+.|||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 134 a 134 (156)
T 3n9u_C 134 A 134 (156)
T ss_dssp C
T ss_pred c
Confidence 9
No 44
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-21 Score=144.68 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++++|||+|||..+++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|..|+ .|||..|.|+.|+|.+|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4589999999999999999999999999999999999999999999999999999999999 99999999999999999
No 45
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-21 Score=145.09 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=77.0
Q ss_pred eeccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 14 yt~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
|....++++|||+|||+.+++++|+++|++||+|.+|.|+.++. |.++|||||+|.+.++|..|+. +||..|.|+.|.
T Consensus 5 ~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~ 82 (103)
T 1s79_A 5 LKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLL 82 (103)
T ss_dssp CSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCE
T ss_pred ccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEE
Confidence 33445678999999999999999999999999999999999987 9999999999999999999999 999999999999
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|.++
T Consensus 83 V~~~ 86 (103)
T 1s79_A 83 ILFK 86 (103)
T ss_dssp EEEH
T ss_pred EEEc
Confidence 9998
No 46
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.85 E-value=8.6e-22 Score=135.26 Aligned_cols=75 Identities=11% Similarity=0.135 Sum_probs=72.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 22 ~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+|||+|||+.+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|++ |||..+.|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999999999999999999999999998 9999999999999986
No 47
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=3e-21 Score=147.02 Aligned_cols=81 Identities=33% Similarity=0.381 Sum_probs=78.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..+.++|||+|||..+++++|+++|++||+|++|+++.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 119 a 119 (139)
T 1u6f_A 119 A 119 (139)
T ss_dssp S
T ss_pred C
Confidence 9
No 48
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.3e-22 Score=140.36 Aligned_cols=80 Identities=24% Similarity=0.199 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+.|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999876
No 49
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.85 E-value=2.9e-21 Score=136.07 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++++|||+|||+.+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|..|+ .|||..|.|+.|+|.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3579999999999999999999999999999999999999999999999999999999999 99999999999999999
No 50
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=2.4e-21 Score=145.35 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|+||
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
No 51
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=146.26 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||+|.+|+++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999986
No 52
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=144.82 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+++++|||+|||..+++++|+++|++||.|.+|.++.++ +|.++|||||+|.+.++|..|++.|||..|.|+.|+|++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 567899999999999999999999999999999999997 9999999999999999999999999999999999999999
No 53
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.85 E-value=1.2e-21 Score=139.91 Aligned_cols=79 Identities=19% Similarity=0.160 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+++|||+|||+.+++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999999998
No 54
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-21 Score=139.97 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...++|||+|||+.+++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45688999999999999999999999999999999999899999999999999999999999999999999999999999
No 55
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-21 Score=142.73 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCee--------EEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIE--------ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~--------~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G 89 (187)
.++++|||+|||..+++++|+++|++||.|. .|+|+.++.++.++|||||+|.+.++|..|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4678999999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred ceeEEEec
Q 029812 90 NRLKVSYA 97 (187)
Q Consensus 90 ~~L~V~~A 97 (187)
+.|+|.+|
T Consensus 93 ~~l~V~~a 100 (113)
T 2cpe_A 93 SKLKVSLA 100 (113)
T ss_dssp EECEEECS
T ss_pred CEEEEEEC
Confidence 99999999
No 56
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=3.7e-21 Score=136.58 Aligned_cols=78 Identities=18% Similarity=0.106 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||+|.+|.++.+ ++.++|||||+|.+.++|..|++.|||..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56799999999999999999999999999999999974 7899999999999999999999999999999999999999
No 57
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=4.7e-21 Score=139.39 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.++|||+|||+.+++++|+++|++|| |.+|.++.++.++.++|||||+|.+.++|..|+ .|||..|.|+.|+|.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4578999999999999999999999997 999999999999999999999999999999999 89999999999999999
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=2.1e-21 Score=148.62 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=79.1
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 16 ~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
..+++++|||+|||..+++++|+++|++||+|.+|+++.++.+|.++|||||+|.+.++|..|++.|||..|.|++|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
||
T Consensus 122 ~a 123 (129)
T 2kxn_B 122 FS 123 (129)
T ss_dssp CC
T ss_pred Ee
Confidence 99
No 59
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=140.41 Aligned_cols=79 Identities=16% Similarity=0.094 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcc-CCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCce-eCCceeEEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFAT-YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV-FLGNRLKVS 95 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~-fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~-f~G~~L~V~ 95 (187)
.++++|||+|||+.+++++|+++|++ ||.|.+|.++.++ +|.++|||||+|.+.++|..|++.|||.. |.|+.|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 46789999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
+|
T Consensus 86 ~a 87 (104)
T 2dhg_A 86 VA 87 (104)
T ss_dssp BC
T ss_pred Ec
Confidence 99
No 60
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.8e-21 Score=142.07 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.++|||+|||+.+++++|+++|++||+|.+|+|+.++.++.++|||||+|.+.++|..|++.||+ .|.|+.|+|.+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999 899999999999
No 61
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=143.41 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=71.3
Q ss_pred eccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCce--eCCcee
Q 029812 15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV--FLGNRL 92 (187)
Q Consensus 15 t~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~--f~G~~L 92 (187)
....++++|||+|||+.+++++|+++|++||+|.+|.+++. ||||||+|++.++|..|++.|||.. +.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34467899999999999999999999999999999999875 7999999999999999999999986 679999
Q ss_pred EEEec
Q 029812 93 KVSYA 97 (187)
Q Consensus 93 ~V~~A 97 (187)
+|+||
T Consensus 90 ~V~~S 94 (100)
T 3r27_A 90 FVNYS 94 (100)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99999
No 62
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.7e-21 Score=140.77 Aligned_cols=81 Identities=19% Similarity=0.319 Sum_probs=76.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCC-eeEEEec-cCCCCCCceeEEEEEEccHHHHHHHHHHhC--CceeCCcee
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGD-IEECKPM-DAEDCDPFTDVYFIKFRLFSNARFAKRKLD--EFVFLGNRL 92 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~-I~~V~il-~dk~tg~~rG~AFV~F~~~e~A~~Ai~~Ln--G~~f~G~~L 92 (187)
..++++|||+|||+.+++++|+++|++||. |.+|.++ .++.+|.++|||||+|.+.++|..|++.|| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999999 9999998 888899999999999999999999999996 599999999
Q ss_pred EEEec
Q 029812 93 KVSYA 97 (187)
Q Consensus 93 ~V~~A 97 (187)
+|.||
T Consensus 85 ~V~~a 89 (109)
T 2dis_A 85 AVDWA 89 (109)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 99999
No 63
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.7e-21 Score=139.14 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCC-CCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC-DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~t-g~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
.+.++|||+|||+.+++++|+++|++|| |.+|.|+.++.+ +.++|||||+|.+.++|..|+ .|||..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 999999999988 999999999999999999999 9999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 91 a 91 (104)
T 1wi8_A 91 A 91 (104)
T ss_dssp C
T ss_pred c
Confidence 9
No 64
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=140.67 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=77.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..+.++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++. ||..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 92 a 92 (105)
T 2dh8_A 92 C 92 (105)
T ss_dssp S
T ss_pred c
Confidence 9
No 65
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6e-21 Score=138.57 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.+ ++|||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 46789999999999999999999999999999999998543 6899999999999999999999999999999999999
No 66
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=7.8e-21 Score=140.01 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||.|.+|.|+.++ ++.++|||||+|.+.++|..|++.|||..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 467899999999999999999999999999999999997 5999999999999999999999999999999999999999
No 67
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-21 Score=133.77 Aligned_cols=76 Identities=12% Similarity=0.154 Sum_probs=73.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++|||+|||+.+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|++.++ ..+.|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999999 9999999999987
No 68
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=136.46 Aligned_cols=78 Identities=26% Similarity=0.334 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|.+|+|+.++. .++|||||+|.+.++|..|++.|||..|.|+.|+|.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4679999999999999999999999999999999998854 38999999999999999999999999999999999999
No 69
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=9.7e-21 Score=146.81 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...++|||+|||+.+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
No 70
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.84 E-value=5.5e-21 Score=140.36 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCc-
Q 029812 18 DESRYLIVRNVPSLG------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN- 90 (187)
Q Consensus 18 ~es~~LyV~NLP~~~------teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~- 90 (187)
..+++|||+|||+.+ ++++|+++|++||+|.+|.++ +.+|.++|||||+|.+.++|..|++.|||..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999998 789999999999999999998 46899999999999999999999999999999999
Q ss_pred eeEEEecCCc
Q 029812 91 RLKVSYASQF 100 (187)
Q Consensus 91 ~L~V~~A~~~ 100 (187)
+|+|.+|...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999443
No 71
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=148.56 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeE--EEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCc----eeCCce
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF----VFLGNR 91 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~--V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~----~f~G~~ 91 (187)
..+++|||+|||+.+++++|+++|++||.|.. |+|+.|+.||.++|||||+|.+. +|..|++.|||. .+.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45689999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred eEEEec
Q 029812 92 LKVSYA 97 (187)
Q Consensus 92 L~V~~A 97 (187)
|+|+||
T Consensus 100 l~V~~a 105 (131)
T 2m2b_A 100 INVEFA 105 (131)
T ss_dssp CCCEEC
T ss_pred EEEEEC
Confidence 999999
No 72
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-21 Score=136.12 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCC------CHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCc-ee
Q 029812 20 SRYLIVRNVPSLG------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-RL 92 (187)
Q Consensus 20 s~~LyV~NLP~~~------teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~-~L 92 (187)
+++|||+|||..+ ++++|+++|++||+|.+|.++ +.+|.++|||||+|.+.++|..|++.|||..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999998 779999999999999999988 46899999999999999999999999999999999 99
Q ss_pred EEE
Q 029812 93 KVS 95 (187)
Q Consensus 93 ~V~ 95 (187)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 874
No 73
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.6e-21 Score=138.05 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 18 DESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~----~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
.++++|||+|||+.+++++|+ ++|++||+|.+|+++.++.+ +|||||+|.+.++|..|++.|||..|.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999999766 89999999999999999999999999999999
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|++|
T Consensus 84 V~~a 87 (96)
T 2dgx_A 84 VSLA 87 (96)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9999
No 74
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=1.2e-20 Score=146.76 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||+|.+|.|+.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|+||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
No 75
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=7.5e-21 Score=142.76 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=77.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..++++|||+|||..+++++|+++|++||+|.+|+++.++ +|.++|||||+|.+.++|..|++.|||..|.|+.|+|+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 111 a 111 (124)
T 2kt5_A 111 V 111 (124)
T ss_dssp E
T ss_pred e
Confidence 9
No 76
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.84 E-value=1.2e-21 Score=138.90 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=74.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++|||+|||..+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.+ |..|++.|||..+.|+.|+|++|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 57999999999999999999999999999999999999999999999999999 99999999999999999999999
No 77
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.84 E-value=8e-21 Score=140.80 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=74.1
Q ss_pred eeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 029812 13 VYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (187)
Q Consensus 13 ~yt~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L 92 (187)
.+....++++|||+|||..+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|++.+ |..|.|+.|
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 3445567899999999999999999999999999999999999999999999999999999999999986 599999999
Q ss_pred EEEec
Q 029812 93 KVSYA 97 (187)
Q Consensus 93 ~V~~A 97 (187)
+|.+|
T Consensus 97 ~V~~a 101 (109)
T 2rs2_A 97 DPKVA 101 (109)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99999
No 78
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=5.4e-21 Score=141.71 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCHHHHH---HhhccCCCeeEEEeccCCCCC---CceeEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 029812 19 ESRYLIVRNVPSLGCGDDLL---KLFATYGDIEECKPMDAEDCD---PFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~---~lFs~fG~I~~V~il~dk~tg---~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L 92 (187)
+.++|||+|||+.+++++|. ++|++||+|.+|.++.++.++ .++|||||+|.+.++|..|++.|||..|.|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 46899999999999999999 999999999999999987754 566999999999999999999999999999999
Q ss_pred EEEec
Q 029812 93 KVSYA 97 (187)
Q Consensus 93 ~V~~A 97 (187)
+|+||
T Consensus 94 ~V~~a 98 (111)
T 2cpi_A 94 KASLG 98 (111)
T ss_dssp EEESC
T ss_pred EEEec
Confidence 99999
No 79
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=138.84 Aligned_cols=79 Identities=10% Similarity=0.179 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee--------CC
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF--------LG 89 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f--------~G 89 (187)
.+.++|||+|||..+++++|+++|++||.|.+|+++.++ ++.++|||||+|.+.++|..|++.|||..+ .|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456899999999999999999999999999999999998 999999999999999999999999999999 67
Q ss_pred ceeEEEec
Q 029812 90 NRLKVSYA 97 (187)
Q Consensus 90 ~~L~V~~A 97 (187)
++|.|.||
T Consensus 102 ~~l~v~~a 109 (114)
T 1x5o_A 102 EPLLCKFS 109 (114)
T ss_dssp SCBEEEEC
T ss_pred CceeEEcc
Confidence 88999999
No 80
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=5.3e-21 Score=139.11 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=73.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCC-CCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE-DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk-~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
....++|||+|||..+++++|+++|++|| |.+|.++.++ .+|.++|||||+|.+.++|..|+ .|||..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 35679999999999999999999999999 9999999998 69999999999999999999999 899999999999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
+|
T Consensus 94 ~a 95 (100)
T 2j76_E 94 VA 95 (100)
T ss_dssp EC
T ss_pred ec
Confidence 99
No 81
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.7e-21 Score=142.81 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCc--eeCCceeEE
Q 029812 18 DESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF--VFLGNRLKV 94 (187)
Q Consensus 18 ~es~~LyV~NLP~-~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~--~f~G~~L~V 94 (187)
+++++|||+|||+ .++++||+++|++||+|.+|.|+++ +|||||+|++.++|..|++.|||. .|.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4688999999999 9999999999999999999999987 589999999999999999999875 599999999
Q ss_pred EecC
Q 029812 95 SYAS 98 (187)
Q Consensus 95 ~~A~ 98 (187)
+||.
T Consensus 87 ~~a~ 90 (102)
T 1x4d_A 87 HLSQ 90 (102)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9993
No 82
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.1e-21 Score=143.50 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=70.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhC--CceeCCceeEE
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD--EFVFLGNRLKV 94 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~Ln--G~~f~G~~L~V 94 (187)
+.++++|||+|||+.+++++|+++|++||+|.+|.|+++ ||||||+|++.++|..|++.|+ |..|.|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 457899999999999999999999999999999999986 6999999999999999999886 47899999999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
+||
T Consensus 87 ~~A 89 (105)
T 1sjq_A 87 QFS 89 (105)
T ss_dssp CCC
T ss_pred EEc
Confidence 999
No 83
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.7e-21 Score=142.87 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+..+|||+|||+.+++++|+++|++||.|.++.++.+..+|.++|||||+|.+.++|..|++ |||..|.|+.|+|.+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 466899999999999999999999999999997777777899999999999999999999999 9999999999999999
No 84
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=132.54 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.++|||+|||+.+++++|+++|++| .|.+|.++.+ .+|.++|||||+|.+.++|..|++ |||..|.|+.|+|.+|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 457899999999999999999999999 9999999999 789999999999999999999999 9999999999999999
No 85
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.3e-21 Score=140.51 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+.++|||+|||+.+++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|..|++. ||..|.|+.|+|.+|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 458999999999999999999999999999999999999999999999999999999999998 999999999999999
No 86
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.83 E-value=1.9e-20 Score=138.42 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||.|.+|.++.+ +.++|||||+|.+.++|..|++.|||..+.|+.|+|+||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45789999999999999999999999999999999976 455899999999999999999999999999999999999
No 87
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=7.3e-21 Score=146.43 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 18 DESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~----~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
.++++|||+|||+.+++++|+ ++|++||+|.+|.+.. ++.++|||||+|.+.++|..|++.|||..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999998865 7999999999998864 578899999999999999999999999999999999
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|+||
T Consensus 104 V~~a 107 (127)
T 2a3j_A 104 ITFS 107 (127)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9999
No 88
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.83 E-value=1.1e-20 Score=148.97 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|..|.|+.++.+|.++|||||+|.+.++|..||+.|||..|.|+.|+|.||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
No 89
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=134.86 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.++|||+|||+.+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|++ +++.|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999998 588999999999999
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=136.47 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=73.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..++++|||+|||..+++++|+++|++||.|.+|.+..+ +.++|||||+|.+.++|..|++.|||..|.|+.|+|+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999765 45899999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 96 a 96 (109)
T 1x4a_A 96 P 96 (109)
T ss_dssp C
T ss_pred c
Confidence 9
No 91
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=133.88 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=73.4
Q ss_pred eeccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC--Cce
Q 029812 14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL--GNR 91 (187)
Q Consensus 14 yt~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~--G~~ 91 (187)
|....++++|||+|||..+++++|+++|++||+|.+|.++.+ +|||||+|.+.++|..|++.|||..+. |+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 445567899999999999999999999999999999999875 789999999999999999999999999 999
Q ss_pred eEEEec
Q 029812 92 LKVSYA 97 (187)
Q Consensus 92 L~V~~A 97 (187)
|+|.||
T Consensus 85 l~V~~a 90 (97)
T 1why_A 85 LRVDFA 90 (97)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 999999
No 92
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=1.4e-20 Score=140.80 Aligned_cols=78 Identities=24% Similarity=0.250 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|..|+ .|||..|.|+.|+|+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4579999999999999999999999999999999999999999999999999999999999 89999999999999999
No 93
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.6e-21 Score=140.98 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=74.8
Q ss_pred ceeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCce
Q 029812 12 RVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR 91 (187)
Q Consensus 12 ~~yt~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~ 91 (187)
+.+....++++|||+|||..+++++|+++|++||.|..|.+..+..++.++|||||+|.+.++|..|++.|||..|.|+.
T Consensus 17 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 17 SSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CCCCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred cccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34455567899999999999999999999999999954433333237889999999999999999999999999999999
Q ss_pred eEEEec
Q 029812 92 LKVSYA 97 (187)
Q Consensus 92 L~V~~A 97 (187)
|+|.||
T Consensus 97 l~v~~a 102 (115)
T 2cpx_A 97 LVIEFG 102 (115)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 999999
No 94
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.5e-20 Score=137.34 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHh--CCceeCCceeEEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL--DEFVFLGNRLKVS 95 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~L--nG~~f~G~~L~V~ 95 (187)
.++++|||+|||+.+++++|+++|++||.|.+|.++.+ +|||||+|++.++|..|++.| ++..+.|++|+|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999999876 799999999999999999977 5788999999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
||
T Consensus 87 ~a 88 (101)
T 2cq1_A 87 YS 88 (101)
T ss_dssp EC
T ss_pred Ec
Confidence 99
No 95
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.82 E-value=5.9e-21 Score=130.80 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=72.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 22 ~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+|||+|||+.+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|++. +|..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999985 999999999999876
No 96
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=8.3e-21 Score=146.17 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
No 97
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=1.5e-20 Score=156.74 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=76.2
Q ss_pred eeccCCCCeEEEcCCCCCCCHHHHHHhhccCC--CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCce
Q 029812 14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYG--DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR 91 (187)
Q Consensus 14 yt~~~es~~LyV~NLP~~~teedL~~lFs~fG--~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~ 91 (187)
|+.....++|||+|||+.+++++|+++|++|| +|++|+|+.++.|++++|||||+|.+.++|..||+.|||+.|.|+.
T Consensus 62 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~ 141 (229)
T 3q2s_C 62 YTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 141 (229)
T ss_dssp -------CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC
T ss_pred ccCCCCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE
Confidence 44445678999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred eEEEec
Q 029812 92 LKVSYA 97 (187)
Q Consensus 92 L~V~~A 97 (187)
|+|.+|
T Consensus 142 l~V~~a 147 (229)
T 3q2s_C 142 PVVTPV 147 (229)
T ss_dssp CEEEEC
T ss_pred eEEEEC
Confidence 999999
No 98
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-20 Score=139.90 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=76.2
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCCe-eEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 029812 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDI-EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (187)
Q Consensus 16 ~~~es~~LyV~NLP~~~teedL~~lFs~fG~I-~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V 94 (187)
...+.++|||+|||+.+++++|+++|++||.| .+|+|+.++ +|.++|||||+|.+.++|..|++. ||..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 899999998 999999999999999999999987 999999999999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
.+|
T Consensus 89 ~~a 91 (114)
T 2cpy_A 89 HVV 91 (114)
T ss_dssp EEE
T ss_pred EEC
Confidence 999
No 99
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.7e-20 Score=138.50 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=69.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCc--eeCCceeEE
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF--VFLGNRLKV 94 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~--~f~G~~L~V 94 (187)
..++++|||+|||+.+++++|+++|++||+|.+|.++.+ ||||||+|++.++|..|++.|+|. .+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 356799999999999999999999999999999999875 799999999999999999999765 489999999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
+||
T Consensus 86 ~~a 88 (104)
T 1wex_A 86 NYS 88 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 999
No 100
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=1.5e-20 Score=134.66 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 18 DESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~----~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
.++++|||+|||..+++++|+ ++|++||.|.+|.++. +|.++|||||+|.+.++|..|++.|||..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 467999999999999999999 9999999999999884 577899999999999999999999999999999999
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|+||
T Consensus 83 v~~a 86 (97)
T 1nu4_A 83 IQYA 86 (97)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9999
No 101
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=133.11 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||.| +++.+ .++.++|||||+|.+.++|..|++.|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 467999999999999999999999999987 56666 68999999999999999999999999999999999999999
No 102
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=137.35 Aligned_cols=78 Identities=26% Similarity=0.342 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||+|.+|+++.++ +.++|||||+|.+.++|..|++.|||..|.|+.|+|++|
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999885 458999999999999999999999999999999999999
No 103
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.4e-20 Score=142.06 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=70.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCC--ceeCCceeEE
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE--FVFLGNRLKV 94 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG--~~f~G~~L~V 94 (187)
..++++|||+|||+.+++++|+++|++||+|.+|.|+.+ +|||||+|++.++|..|++.|++ ..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 356899999999999999999999999999999999986 79999999999999999999984 6899999999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
+||
T Consensus 102 ~~a 104 (119)
T 2ad9_A 102 QFS 104 (119)
T ss_dssp EEC
T ss_pred EEc
Confidence 999
No 104
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7.8e-20 Score=139.30 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|+|||+|.+.++|..|++.|||..+.|++|+|+||
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
No 105
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.7e-20 Score=129.06 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHh-CCceeCCceeEEEe
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL-DEFVFLGNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~L-nG~~f~G~~L~V~~ 96 (187)
.++++|||+|||..+++++|+++|++||+|.+|.++.+ +|||||+|.+.++|..|++.| ||..+.|++|+|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45689999999999999999999999999999999975 799999999999999999999 99999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 8
No 106
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.82 E-value=8.4e-20 Score=139.24 Aligned_cols=78 Identities=26% Similarity=0.350 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+++|||+|||+.+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..+.|++|+|.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 589999999999999999999999999999999999989999999999999999999999999999999999999999
No 107
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=3.7e-20 Score=136.05 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.-|||+||++.+|+++|++||++||+|.++++.. ++|||||+|.+.++|..|++.|||..+.|++|+|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999999999999999976 4899999999999999999999999999999999999
No 108
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.81 E-value=9.4e-21 Score=145.42 Aligned_cols=87 Identities=21% Similarity=0.252 Sum_probs=76.1
Q ss_pred ceeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEE--EeccC---CCCCCceeEEEEEEccHHHHHHHHHHhCCce
Q 029812 12 RVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC--KPMDA---EDCDPFTDVYFIKFRLFSNARFAKRKLDEFV 86 (187)
Q Consensus 12 ~~yt~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V--~il~d---k~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~ 86 (187)
+-|....++++|||+|||+.+++++|+++|++||.|..| +++.+ ..+|.++|||||+|.+.++|..|++.|||..
T Consensus 37 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 37 RSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp TTCCCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred cccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 345556778999999999999999999999999999885 22222 3478999999999999999999999999999
Q ss_pred eCCceeEEEecC
Q 029812 87 FLGNRLKVSYAS 98 (187)
Q Consensus 87 f~G~~L~V~~A~ 98 (187)
|.|+.|+|.||.
T Consensus 117 ~~g~~l~V~~a~ 128 (143)
T 3egn_A 117 LFGKPMVVQFAR 128 (143)
T ss_dssp ETTEECEEEECC
T ss_pred eCCcEEEEEECC
Confidence 999999999993
No 109
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.9e-20 Score=134.28 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeE-EEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE-CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~-V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
.+..+|||+|||+.+++++|+++|++||.|.+ |.|+.+ .+|+++|||||+|.+.++|..|++. ||..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45789999999999999999999999999998 899988 7899999999999999999999998 99999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
+
T Consensus 91 ~ 91 (104)
T 1wg5_A 91 S 91 (104)
T ss_dssp E
T ss_pred C
Confidence 8
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=8.5e-20 Score=129.72 Aligned_cols=73 Identities=22% Similarity=0.381 Sum_probs=69.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..++++|||+|||..+++++|+++|++||+|.+|.++ +|||||+|.+.++|..|++.|||..+.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3567899999999999999999999999999999998 47999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
+
T Consensus 77 a 77 (90)
T 2dnq_A 77 S 77 (90)
T ss_dssp S
T ss_pred C
Confidence 9
No 111
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.3e-20 Score=132.15 Aligned_cols=74 Identities=28% Similarity=0.413 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.++.+ +|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999876 699999999999999999999999999999999999
No 112
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=4.6e-20 Score=138.63 Aligned_cols=79 Identities=10% Similarity=0.096 Sum_probs=75.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCC---eeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGD---IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~---I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
..+.++|||+|||+.+++++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|..|++ |||+.|.|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999999 89999999977 9999999999999999999999 999999999999
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|.+|
T Consensus 92 V~~a 95 (118)
T 2db1_A 92 VFKS 95 (118)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9999
No 113
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=9.2e-20 Score=148.07 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.++|||+|||+.+++++|+++|++||+|.+|+|++|+.++.++|||||+|.+.++|..|++.|||..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 029812 98 S 98 (187)
Q Consensus 98 ~ 98 (187)
.
T Consensus 93 ~ 93 (213)
T 4f02_A 93 Q 93 (213)
T ss_dssp C
T ss_pred c
Confidence 3
No 114
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.81 E-value=7.3e-20 Score=140.33 Aligned_cols=79 Identities=28% Similarity=0.365 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++++|||+|||+.+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..+.|++|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999999
No 115
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7e-20 Score=134.80 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.++|||+|||+.++++||+++|++||. .+|+|+.++ +++++|||||+|.+.++|..|+ .+|++.|.|+.|+|..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 45689999999999999999999999995 599999997 8999999999999999999999 57999999999999998
No 116
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.81 E-value=1.1e-19 Score=140.15 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..+++|||+|||..+++++|+++|++||+|..|.++.++.+|.++|||||+|.+.++|..|++.|||..+.|++|+|+||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
No 117
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=9e-21 Score=137.18 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||.|.. .++.++.+|.++|||||+|.+.++|..|++ |||..|.|+.|+|.+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999999999 778888889999999999999999999998 9999999999999999
No 118
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=1.6e-19 Score=131.20 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=70.0
Q ss_pred eeeccCCCCeEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCce
Q 029812 13 VYTVCDESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR 91 (187)
Q Consensus 13 ~yt~~~es~~LyV~NLP~-~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~ 91 (187)
......++++|||+|||+ .+++++|+++|++||.|.+|.+. +|||||+|.+.++|..|++.|||..+.|+.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344456789999999998 99999999999999999999984 689999999999999999999999999999
Q ss_pred eEEEec
Q 029812 92 LKVSYA 97 (187)
Q Consensus 92 L~V~~A 97 (187)
|+|+||
T Consensus 87 l~V~~a 92 (97)
T 2xnq_A 87 LILEVS 92 (97)
T ss_dssp CEEEEC
T ss_pred EEEEec
Confidence 999999
No 119
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.7e-20 Score=136.39 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecC
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~ 98 (187)
.+++|||+|||+.+++++|+++|++||.|.+|.++.. +|||||+|.+.++|..|++.|||+.|.|++|+|+||+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3579999999999999999999999999999998864 7899999999999999999999999999999999993
No 120
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=130.61 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|+.|+ +|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4678999999999999999999999874 6788888889999999999999999999999999999999999999999
No 121
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-19 Score=142.11 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=88.5
Q ss_pred CeEEEcCC----CCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEcc----HHH----HHHHHH--HhCCce
Q 029812 21 RYLIVRNV----PSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRL----FSN----ARFAKR--KLDEFV 86 (187)
Q Consensus 21 ~~LyV~NL----P~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~----~e~----A~~Ai~--~LnG~~ 86 (187)
+.|||+|| |+.+++.+|+++|++||+|.+|+++.|+.||.++|||||+|.+ +.+ |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 899998 899999
Q ss_pred eCCceeEEEecCCcCChHHHHHHHHHHHHHHHHHhhcCCCC
Q 029812 87 FLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSK 127 (187)
Q Consensus 87 f~G~~L~V~~A~~~e~~~d~r~K~~~rr~ev~~r~~~~~~~ 127 (187)
|.|++|+|.+-++... +.+.+++-....+-+.+++++..+
T Consensus 83 I~Gr~irV~ln~~g~~-~~~~~~~i~~~~~~~~~~~~~~~~ 122 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL-NNIISKFVEINVKKLQKLQENLKK 122 (136)
T ss_dssp ETTEEEEEEECCTTHH-HHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred ecCcEEEEEECcccHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999965544 556666555555666677766544
No 122
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=132.95 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=71.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
...+++|||+|||..+++++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|++.|||..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999987 79999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 96 a 96 (109)
T 1x4g_A 96 G 96 (109)
T ss_dssp C
T ss_pred c
Confidence 9
No 123
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=131.53 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC-----cee
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG-----NRL 92 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G-----~~L 92 (187)
..+++|||+|||+.+++++|+++|++||+|..|.|+.+ |||||+|.+.++|..||+.|||+.|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35689999999999999999999999999999999986 899999999999999999999999999 999
Q ss_pred EEEec
Q 029812 93 KVSYA 97 (187)
Q Consensus 93 ~V~~A 97 (187)
+|.+|
T Consensus 86 ~V~~a 90 (108)
T 1x4c_A 86 RVKVD 90 (108)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99999
No 124
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=127.31 Aligned_cols=72 Identities=28% Similarity=0.401 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.++++ ||||+|.+.++|..|++.|||..|.|+.|+|+||
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999854 9999999999999999999999999999999999
No 125
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-20 Score=139.39 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=69.7
Q ss_pred cCCCCeEEEcCCCCC-CCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCC--ceeCCceeE
Q 029812 17 CDESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE--FVFLGNRLK 93 (187)
Q Consensus 17 ~~es~~LyV~NLP~~-~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG--~~f~G~~L~ 93 (187)
..++++|||+|||+. +++++|+++|++||+|.+|.|++. +|||||+|++.++|..|++.||+ ..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456899999999998 999999999999999999999864 79999999999999999998864 569999999
Q ss_pred EEecC
Q 029812 94 VSYAS 98 (187)
Q Consensus 94 V~~A~ 98 (187)
|+||.
T Consensus 96 V~~a~ 100 (112)
T 1x4f_A 96 VDLSE 100 (112)
T ss_dssp EEEEC
T ss_pred EEECc
Confidence 99993
No 126
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.80 E-value=4.8e-20 Score=135.72 Aligned_cols=79 Identities=11% Similarity=0.043 Sum_probs=75.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCC---eeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGD---IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~---I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
..+..+|||+|||+.+++++|+++|++||. |.+|.|+.++. |.++|||||+|.+.++|..|++ |||..+.|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 356789999999999999999999999998 99999999987 9999999999999999999999 999999999999
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|.+|
T Consensus 86 V~~a 89 (107)
T 2lmi_A 86 VYEI 89 (107)
T ss_dssp CEEC
T ss_pred EEEC
Confidence 9999
No 127
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=9e-20 Score=141.95 Aligned_cols=78 Identities=10% Similarity=0.081 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCC---eeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGD---IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~---I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V 94 (187)
.++++|||+|||+.+++++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|..|++ |||+.|.|+.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45789999999999999999999999999 89999999987 9999999999999999999999 9999999999999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
.+|
T Consensus 120 ~~a 122 (136)
T 2hgl_A 120 FKS 122 (136)
T ss_dssp EEC
T ss_pred EEC
Confidence 999
No 128
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=7.5e-20 Score=132.53 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++++|||+|||..+++++|+++|++||.|.+|.++.++ +|.++|||||+|.+.++|..|++ +|..+.|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 45899999999999999999999999999999999998 99999999999999999999998 999999999999999
No 129
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1e-19 Score=131.61 Aligned_cols=73 Identities=25% Similarity=0.424 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+++|||+|||..+++++|+++|++||.|.+|+++. ++|||||+|.+.++|..|++.|||..+.|+.|+|.||
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 468999999999999999999999999999999984 3799999999999999999999999999999999999
No 130
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=2.1e-19 Score=133.27 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=70.1
Q ss_pred eccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 029812 15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (187)
Q Consensus 15 t~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V 94 (187)
....++++|||+|||..+++++|+++|++||.|.+|.++ +|||||+|.+.++|..|++.|||..|.|+.|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 334567999999999999999999999999999999998 589999999999999999999999999999999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
.||
T Consensus 98 ~~a 100 (108)
T 2jvo_A 98 VYS 100 (108)
T ss_dssp ESC
T ss_pred EEe
Confidence 999
No 131
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.80 E-value=1.8e-19 Score=144.90 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.|+.++ ++.++|||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 9999999999999999999999999999999999999999
No 132
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=4.1e-21 Score=142.65 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeE--------EEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--------CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~--------V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G 89 (187)
.++++|||+|||..+++++|+++|++||.|.+ |.++.++.++.++|||||+|.+.++|..|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ceeEEEec
Q 029812 90 NRLKVSYA 97 (187)
Q Consensus 90 ~~L~V~~A 97 (187)
+.|+|++|
T Consensus 85 ~~l~V~~a 92 (116)
T 2lcw_A 85 NPIKVSFA 92 (116)
Confidence 99999999
No 133
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=3.4e-19 Score=141.99 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|+|+||
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
No 134
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.9e-19 Score=129.69 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=68.6
Q ss_pred cCCCCeEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 17 CDESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 17 ~~es~~LyV~NLP~-~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
..++++|||+|||+ .+++++|+++|++||+|.+|.+. +|||||+|.+.++|..|++.|||..+.|++|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45789999999998 99999999999999999999984 6899999999999999999999999999999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
|+
T Consensus 79 ~a 80 (96)
T 2kvi_A 79 VS 80 (96)
T ss_dssp EE
T ss_pred Ec
Confidence 99
No 135
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=9.2e-20 Score=130.48 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|..|++.|||..+.|+.|+|.+|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 356899999999999999999999999998776 357889999999999999999999999999999999999999
No 136
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=129.82 Aligned_cols=75 Identities=17% Similarity=0.126 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..+++|||+|||+.+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|..|++.|||..|.|+.|+|.+|
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4578999999999999999999999999997 777754 57899999999999999999999999999999999999
No 137
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=9.3e-20 Score=131.82 Aligned_cols=72 Identities=24% Similarity=0.270 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++|||+|||+.+++++|+++|++||+|.+|.++.+ ++|||||+|.+.++|..|++.|||..+.|+.|+|.||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 47999999999999999999999999999999987 6899999999999999999999999999999999999
No 138
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=126.43 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||.|.+|.++++ ||||+|.+.++|..|++.|||..|.|+.|+|.+|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 46789999999999999999999999999999999854 9999999999999999999999999999999999
No 139
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=4.3e-19 Score=136.04 Aligned_cols=80 Identities=24% Similarity=0.288 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC--ceeEEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVS 95 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G--~~L~V~ 95 (187)
.++++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|+|||+|.+.++|..|++.|||..|.| ++|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 356899999999999999999999999999999999998899999999999999999999999999999988 999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 140
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=2.1e-19 Score=135.44 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCC-CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG-~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
....+|||+|||+.+++++|+++|++|| +|..|.+..+ .++|||||+|.+.++|..|++.|||..|.|+.|+|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3457999999999999999999999999 9999998753 4789999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
+
T Consensus 102 a 102 (111)
T 2jvr_A 102 D 102 (111)
T ss_dssp S
T ss_pred C
Confidence 9
No 141
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=3.9e-19 Score=137.33 Aligned_cols=76 Identities=24% Similarity=0.308 Sum_probs=72.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
....++|||+|||+.+++++|+++|++||.|.+|.++.+ ++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999987 589999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 145 a 145 (150)
T 2i2y_A 145 S 145 (150)
T ss_dssp C
T ss_pred c
Confidence 9
No 142
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.79 E-value=4.9e-19 Score=139.32 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..+++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|+|+||
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 46689999999999999999999999999999999999889999999999999999999999999999999999999999
No 143
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=5.8e-19 Score=128.46 Aligned_cols=72 Identities=25% Similarity=0.388 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||.|.+|.+++ |||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4678999999999999999999999999999999884 59999999999999999999999999999999999
No 144
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.79 E-value=2.3e-19 Score=137.72 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|..|++ ++|..+.|++|+|.||
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 45789999999999999999999999999999999999999999999999999999999998 8999999999999999
No 145
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=6.6e-19 Score=143.00 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..++|||+|||+.+++++|+++|++||.|++|+|+.++ +.++|||||+|.+.++|..|++.|||..|.|++|+|.+|
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45789999999999999999999999999999999874 457999999999999999999999999999999999999
No 146
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=7.8e-19 Score=133.85 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCce--eEEEe
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR--LKVSY 96 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~--L~V~~ 96 (187)
.+++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|..|++.|||..|.|+. |+|+|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 5688999999999999999999999999999999999889999999999999999999999999999999974 99998
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 7
No 147
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=5.5e-19 Score=144.59 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 18 DESRYLIVRNVP-SLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP-~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
.++++|||+||| +.+++++|+++|++||.|.+|+++.++ +|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 799999999999999999999999863 79999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 77 s 77 (205)
T 3tyt_A 77 S 77 (205)
T ss_dssp C
T ss_pred c
Confidence 9
No 148
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=4.2e-19 Score=126.07 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecC
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~ 98 (187)
.+++|||+|||+.+++++|+++|++| +|.+|++. .++|||||+|.+.++|..|++.|||..+.|++|+|.+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999984 468999999999999999999999999999999999995
Q ss_pred C
Q 029812 99 Q 99 (187)
Q Consensus 99 ~ 99 (187)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 149
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=2.9e-19 Score=142.41 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecC
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~ 98 (187)
++++|||+|||..+++++|+++|++||+|.+|+++.++.+|.++|||||+|.+.++|..|++.|||..|.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999999983
No 150
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=6.2e-19 Score=138.55 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.+|.++|||||+|.+.++|..|++. +|..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3568999999999999999999999999999999999999999999999999999999999976 999999999999999
No 151
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=124.66 Aligned_cols=75 Identities=25% Similarity=0.315 Sum_probs=70.1
Q ss_pred eccCCCCeEEEcCCCCCCCHHHHHHhhccC--CCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 029812 15 TVCDESRYLIVRNVPSLGCGDDLLKLFATY--GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (187)
Q Consensus 15 t~~~es~~LyV~NLP~~~teedL~~lFs~f--G~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L 92 (187)
....++++|||+|||+.+++++|+++|++| |.|.+|++. +|||||+|.+.++|..|++.|||..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344577999999999999999999999999 999999876 4699999999999999999999999999999
Q ss_pred EEEec
Q 029812 93 KVSYA 97 (187)
Q Consensus 93 ~V~~A 97 (187)
+|.||
T Consensus 82 ~v~~a 86 (99)
T 2cpd_A 82 EVTLA 86 (99)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 99999
No 152
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=4.9e-19 Score=130.25 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~-~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+++|||+|||+. +++++|+++|++||+|.+|.+ ++|||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 4789999999999999999999999999999999999
No 153
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=126.69 Aligned_cols=75 Identities=29% Similarity=0.380 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEE-EeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC-KPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V-~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+++|||+|||+.+++++|+++|++||+|.+| .++.++.+ |.|||+|.+.++|..|++.|||..+.|++|+|.||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46899999999999999999999999999999 58888654 34999999999999999999999999999999999
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=9.9e-19 Score=137.38 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
..++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|++. +|..|.|+.|+|.||
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 458999999999999999999999999999999999999999999999999999999999986 899999999999999
No 155
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.77 E-value=1.6e-18 Score=129.10 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=73.3
Q ss_pred cCCCCeEEEcCCCC-----CCCHHHHHHhhccCCCeeEEEeccCCCC-CCceeEEEEEEccHHHHHHHHHHhCCceeCCc
Q 029812 17 CDESRYLIVRNVPS-----LGCGDDLLKLFATYGDIEECKPMDAEDC-DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN 90 (187)
Q Consensus 17 ~~es~~LyV~NLP~-----~~teedL~~lFs~fG~I~~V~il~dk~t-g~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~ 90 (187)
..++++|+|+||.. ..++++|+++|++||+|.+|.|+.++.+ +.++|||||+|.+.++|..|++.|||..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35789999999963 2368999999999999999999998654 68999999999999999999999999999999
Q ss_pred eeEEEec
Q 029812 91 RLKVSYA 97 (187)
Q Consensus 91 ~L~V~~A 97 (187)
+|+|.|+
T Consensus 85 ~i~v~~a 91 (105)
T 2pe8_A 85 VVKACFY 91 (105)
T ss_dssp ECEEEEC
T ss_pred EEEEEEc
Confidence 9999999
No 156
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-19 Score=126.58 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCC-eeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCC-ceeCCceeEEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGD-IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE-FVFLGNRLKVS 95 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~-I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG-~~f~G~~L~V~ 95 (187)
...++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|..|++.||| ..+.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45789999999999999999999999999 6666653 379999999999999999999999 99999999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
||
T Consensus 79 ~a 80 (93)
T 2cqh_A 79 YS 80 (93)
T ss_dssp EC
T ss_pred Ec
Confidence 99
No 157
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=130.79 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+..+|||+|||+.++++||+++|++| .|.+|.|+.++. |+++|||||+|.+.++|..|+ .|||+.|.|+.|+|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 45789999999999999999999999 899999999975 999999999999999999999 69999999999999988
No 158
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.77 E-value=1.1e-18 Score=134.34 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC---ceeEEE
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG---NRLKVS 95 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G---~~L~V~ 95 (187)
++++|||+|||..+++++|+++|++||.|.+|.++.++ +|.++|||||+|.+.++|..|++.|||..+.+ ++|+|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56899999999999999999999999999999999985 59999999999999999999999999998874 899999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
||
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 98
No 159
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7.6e-19 Score=130.68 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=64.4
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHhhccC-CCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCce
Q 029812 18 DESRY-LIVRNVPSLGCGDD----LLKLFATY-GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR 91 (187)
Q Consensus 18 ~es~~-LyV~NLP~~~teed----L~~lFs~f-G~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~ 91 (187)
.++.+ |||+|||+.+++++ |+++|++| |+|.+| |+ |+|||+|.+.++|.+|++.|||..|+|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 35666 99999999999877 66999999 599999 33 99999999999999999999999999999
Q ss_pred eEEEecC
Q 029812 92 LKVSYAS 98 (187)
Q Consensus 92 L~V~~A~ 98 (187)
|+|+||+
T Consensus 76 i~v~~A~ 82 (96)
T 2diu_A 76 IIVSFTP 82 (96)
T ss_dssp CEEESSC
T ss_pred EEEEecC
Confidence 9999993
No 160
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.9e-19 Score=134.49 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=69.5
Q ss_pred cCCCCeEEE--cCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee-----CC
Q 029812 17 CDESRYLIV--RNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF-----LG 89 (187)
Q Consensus 17 ~~es~~LyV--~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f-----~G 89 (187)
..++++||| +|||+.+++++|+++|++||+|.+|.++.+ +|||||+|.+.++|..|++.|||+.+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 456789999 669999999999999999999999998764 79999999999999999999999998 68
Q ss_pred ceeEEEec
Q 029812 90 NRLKVSYA 97 (187)
Q Consensus 90 ~~L~V~~A 97 (187)
++|.|.|+
T Consensus 96 ~~l~v~~a 103 (114)
T 2cq2_A 96 ITLYLNFV 103 (114)
T ss_dssp EECEEEEE
T ss_pred cEEEEEec
Confidence 89999999
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.1e-18 Score=132.99 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=72.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++|||+|||..+++++|+++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||..+.|+.|+|.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 589999999999999999999999999999999986 4789999999999999999999999999999999999999
No 162
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.2e-19 Score=134.40 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=73.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCe----eEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDI----EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I----~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L 92 (187)
..+..+|||+|||+.++++||+++|++||.| .+|.|+.+ .+|+++|||||+|.+.++|..|++. ||+.|.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999986 68999998 5899999999999999999999986 9999999999
Q ss_pred EEEec
Q 029812 93 KVSYA 97 (187)
Q Consensus 93 ~V~~A 97 (187)
.|..+
T Consensus 98 ~V~~a 102 (123)
T 2dha_A 98 ELFRS 102 (123)
T ss_dssp CCEEE
T ss_pred EEEEC
Confidence 99988
No 163
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=124.57 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...++|||+|||+.+++++|+++|++||+|.+| +.++.+|. ||||+|.+.++|..|++ |||..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356899999999999999999999999999998 55555665 99999999999999999 9999999999999999
No 164
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=1.5e-18 Score=133.47 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCC--CceeEEEEEEccHHHHHHHHHHhCCceeC---CceeE
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCD--PFTDVYFIKFRLFSNARFAKRKLDEFVFL---GNRLK 93 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg--~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~---G~~L~ 93 (187)
++++|||+|||+.+++++|+++|++||+|.+|+++.++.++ .++|||||+|.+.++|..|++.|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998887 89999999999999999999999999887 57888
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
+.++
T Consensus 82 ~~~~ 85 (175)
T 3nmr_A 82 MKPA 85 (175)
T ss_dssp EEEC
T ss_pred Eccc
Confidence 8888
No 165
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=1.7e-18 Score=156.97 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+.++|||+|||+.+++++|.++|++||.|+.|.|+.++.+|.++|||||+|.+.++|..||+.|||..|.|+.|.|.||
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
No 166
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=4.4e-19 Score=138.63 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
...++|||+|||+.++++||+++|++|| |.+|.|+.++. |+++|||||+|.+.++|..|+ .+|+..|.|+.|+|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4567999999999999999999999999 77999999976 999999999999999999999 89999999999999999
Q ss_pred C
Q 029812 98 S 98 (187)
Q Consensus 98 ~ 98 (187)
.
T Consensus 121 ~ 121 (139)
T 2hgn_A 121 S 121 (139)
T ss_dssp C
T ss_pred C
Confidence 4
No 167
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=2.4e-18 Score=133.94 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=66.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeE-EEEEEccHHHHHHHHHHhCCceeCC--ceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDV-YFIKFRLFSNARFAKRKLDEFVFLG--NRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~-AFV~F~~~e~A~~Ai~~LnG~~f~G--~~L~V~~A 97 (187)
-.|||+|||+.+++++|+++|++||+|.+|.++.+. +|| |||+|.+.++|..|++.|||..|+| ++|+|+||
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 357799999999999999999999999999988642 677 9999999999999999999999999 89999999
No 168
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=122.58 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|| .+++++|+++|++||+|.+|.+. .++|||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 78999999999999999999985 34799999999999999999999999999999999999
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=1.8e-18 Score=132.70 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
++++|||+|||+.+++++|+++|++||+|.+|+++.++.+|.++|||||+|.+.++|..|++. +..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 578999999999999999999999999999999999999999999999999999999999984 67899999999988
No 170
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=2.1e-18 Score=128.80 Aligned_cols=72 Identities=21% Similarity=0.302 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCce-----eE
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR-----LK 93 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~-----L~ 93 (187)
...+|||+|||+.+++++|+++|++||+|.+|.|+.+ |||||+|.+.++|..||+.|||+.|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4688999999999999999999999999999999876 89999999999999999999999999998 56
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|..+
T Consensus 88 v~~~ 91 (115)
T 3beg_B 88 VKVD 91 (115)
T ss_dssp EEEC
T ss_pred eccC
Confidence 6655
No 171
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=4.2e-18 Score=122.21 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC--CceeEEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL--GNRLKVS 95 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~--G~~L~V~ 95 (187)
.+..+|||+|||+.+++++|+++|++||+|.+|+|+.+ ++|||||+|.+.++|. .|+|..+. |+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEE
Confidence 45689999999999999999999999999999999985 6899999999999998 36777655 8899999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
+|
T Consensus 80 ~a 81 (89)
T 3d2w_A 80 NA 81 (89)
T ss_dssp EC
T ss_pred Ec
Confidence 99
No 172
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=127.73 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCC---CCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC---DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~t---g~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V 94 (187)
..+++|||+|||+.+++++|+++|++||+|. +.++.++.+ |.++|||||+|.+.++|..|++.|+ .+.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888877 7999999999999999999999994 367777777
Q ss_pred EecC
Q 029812 95 SYAS 98 (187)
Q Consensus 95 ~~A~ 98 (187)
..++
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 7663
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=4.9e-18 Score=130.78 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=66.3
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeE-EEEEEccHHHHHHHHHHhCCceeCC--ceeE
Q 029812 19 ESRY--LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDV-YFIKFRLFSNARFAKRKLDEFVFLG--NRLK 93 (187)
Q Consensus 19 es~~--LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~-AFV~F~~~e~A~~Ai~~LnG~~f~G--~~L~ 93 (187)
+++. |||+|||+.+++++|+++|++||.|.+|.|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 4544 679999999999999999999999999999752 286 9999999999999999999999998 5899
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|+||
T Consensus 96 V~~A 99 (124)
T 2e5i_A 96 IEYA 99 (124)
T ss_dssp EECC
T ss_pred EEEe
Confidence 9999
No 174
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=2.6e-18 Score=132.43 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCee--EEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIE--ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~--~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
.+.++|||+|||+.+++++|+++|++| .|. +|+|+.|+. |+++|||||+|.+.++|..|++. ++..|.|+.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 456899999999999999999999999 677 999999987 99999999999999999999985 8899999999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
.+
T Consensus 117 ~a 118 (126)
T 2hgm_A 117 KS 118 (126)
T ss_dssp EE
T ss_pred EC
Confidence 88
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=4e-18 Score=119.43 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccC----C-------CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCce
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATY----G-------DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV 86 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~f----G-------~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~ 86 (187)
.++++|||+|||+.+++++|+++|++| | .|.+|.++.+ +|||||+|.+.++|..|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356899999999999999999999999 8 9999999876 799999999999999999 999999
Q ss_pred eCCceeEEEe
Q 029812 87 FLGNRLKVSY 96 (187)
Q Consensus 87 f~G~~L~V~~ 96 (187)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999973
No 176
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=4.4e-18 Score=137.26 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=68.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCC--ceeEEEec
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVSYA 97 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G--~~L~V~~A 97 (187)
.+|||+|||+.+++++|+++|++||+|++|.|..+ .++|||||+|.+.++|..|++.|||..|.| +.|+|+||
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 46899999999999999999999999999998754 257999999999999999999999999976 99999999
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=6.5e-18 Score=140.99 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 18 DESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~----~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
.++++|||+|||..+++++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|..|++.|||..|.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 467999999999999999966 9999999999999986 678999999999999999999999999999999999
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
|.|+
T Consensus 84 v~~a 87 (282)
T 3pgw_A 84 IQYA 87 (282)
T ss_pred EEEe
Confidence 9999
No 178
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.73 E-value=1.8e-17 Score=138.49 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 18 DESRYLIVRNVPSLG-CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~~~-teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..+++|||+|||+.+ ++++|+++|++||.|.+|.++.++ +|.++|+|||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 356899999999995 899999999999999999999986 799999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 261 a 261 (284)
T 3smz_A 261 C 261 (284)
T ss_dssp C
T ss_pred e
Confidence 9
No 179
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=1.2e-17 Score=126.53 Aligned_cols=73 Identities=19% Similarity=0.137 Sum_probs=68.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..++++|||+|| .+++++|+++|++||+|.+|.+.. ++|||||+|.+.++|..|++.|||..|.|+.|+|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456799999996 589999999999999999999863 489999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
|
T Consensus 108 a 108 (121)
T 2bz2_A 108 A 108 (121)
T ss_dssp C
T ss_pred e
Confidence 9
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=1e-17 Score=129.94 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|..|++.|||..|.|+.|+|+||
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 45899999999999999999999999998877 467899999999999999999999999999999999999999
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.72 E-value=1.7e-17 Score=139.05 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHhhccCCCeeEEEeccCCC-CCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEE
Q 029812 18 DESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAED-CDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (187)
Q Consensus 18 ~es~~LyV~NLP~~-~teedL~~lFs~fG~I~~V~il~dk~-tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~ 95 (187)
..+++|||+|||.. +++++|+++|++||.|..|+++.+.. ||.++|||||+|.+.++|..|+ .|||..|.|+.|+|+
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 45689999999999 99999999999999999999999876 6999999999999999999999 999999999999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
||
T Consensus 287 ~a 288 (292)
T 2ghp_A 287 LA 288 (292)
T ss_dssp EC
T ss_pred Ee
Confidence 99
No 182
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.5e-18 Score=119.46 Aligned_cols=71 Identities=21% Similarity=0.199 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee--CCceeEEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF--LGNRLKVS 95 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f--~G~~L~V~ 95 (187)
.++++|||+|||+.+++++|+++|++||+|.+|.++.+ ++|||||+|.+.++|+.| +|..+ .|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEE
Confidence 46799999999999999999999999999999999875 689999999999999754 55544 88999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
++
T Consensus 74 ~a 75 (88)
T 1wf0_A 74 NA 75 (88)
T ss_dssp CC
T ss_pred ec
Confidence 99
No 183
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.71 E-value=2.3e-17 Score=122.57 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=71.7
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHhhccCCCeeEEEeccCCCC--CCceeEEEEEEccHHHHHHHHHHhCCc
Q 029812 18 DESRYLIVRNV--PSLGC--------GDDLLKLFATYGDIEECKPMDAEDC--DPFTDVYFIKFRLFSNARFAKRKLDEF 85 (187)
Q Consensus 18 ~es~~LyV~NL--P~~~t--------eedL~~lFs~fG~I~~V~il~dk~t--g~~rG~AFV~F~~~e~A~~Ai~~LnG~ 85 (187)
.+++.|.+.|+ |.... ++||+++|++||+|.+|.|++++.+ +.++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 33332 3689999999999999999998765 468999999999999999999999999
Q ss_pred eeCCceeEEEecC
Q 029812 86 VFLGNRLKVSYAS 98 (187)
Q Consensus 86 ~f~G~~L~V~~A~ 98 (187)
.|.|++|+|+|++
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999994
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.71 E-value=4.4e-17 Score=136.08 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=78.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
...+++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|++.|||..+.|+.|+|.|
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
+
T Consensus 172 a 172 (284)
T 3smz_A 172 T 172 (284)
T ss_dssp C
T ss_pred C
Confidence 9
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.71 E-value=4.2e-17 Score=132.53 Aligned_cols=79 Identities=13% Similarity=0.210 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEecC
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A~ 98 (187)
.+++|||+|||+.+++++|+++|++||+|.+|.|+++. +|.++|||||+|.+.++|..|++.++ ..|.|++|.|.++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999986 58999999999999999999998665 59999999999984
Q ss_pred C
Q 029812 99 Q 99 (187)
Q Consensus 99 ~ 99 (187)
+
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 3
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.71 E-value=2.6e-17 Score=134.89 Aligned_cols=75 Identities=19% Similarity=0.330 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 18 DESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~-~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
.++++|||+|||+ .+++++|+++|++||.|.+|+++.++ +|||||+|.+.++|..|++.|||..|.|+.|+|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 5679999999999 99999999999999999999999885 78999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
+
T Consensus 107 a 107 (229)
T 2adc_A 107 S 107 (229)
T ss_dssp C
T ss_pred e
Confidence 9
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=5.1e-17 Score=135.56 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=72.2
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC-CceeEE
Q 029812 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKV 94 (187)
Q Consensus 16 ~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~-G~~L~V 94 (187)
...++++|||+|||..+++++|+++|++||.|.+|+++.++ +|||||+|.+.++|..|++.|||..|. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34467899999999999999999999999999999999764 589999999999999999999999999 999999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
+||
T Consensus 278 ~~a 280 (282)
T 3pgw_A 278 SFA 280 (282)
T ss_pred EEe
Confidence 998
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=2.3e-17 Score=139.99 Aligned_cols=75 Identities=24% Similarity=0.401 Sum_probs=70.8
Q ss_pred cCCCCeEEEcCCCCCC---------CHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee
Q 029812 17 CDESRYLIVRNVPSLG---------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~---------teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f 87 (187)
..++++|||+|||..+ ++++|+++|++||+|++|+|+.+ +|||||+|.+.++|+.|++.|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567999999999987 79999999999999999999975 79999999999999999999999999
Q ss_pred ------------CCceeEEEec
Q 029812 88 ------------LGNRLKVSYA 97 (187)
Q Consensus 88 ------------~G~~L~V~~A 97 (187)
.|+.|.|.||
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA 226 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWA 226 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEEC
T ss_pred eccccccccccCCCCEEEEEEc
Confidence 8999999999
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=130.65 Aligned_cols=74 Identities=19% Similarity=0.336 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 19 ESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 19 es~~LyV~NLP~-~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.+++|||+|||+ .+++++|+++|++||.|.+|+++.++ +|||||+|.+.++|..|++.|||..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999999885 789999999999999999999999999999999999
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=117.90 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=68.0
Q ss_pred ccCCCCeEEEcCCCCCC-----------CHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCC
Q 029812 16 VCDESRYLIVRNVPSLG-----------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84 (187)
Q Consensus 16 ~~~es~~LyV~NLP~~~-----------teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG 84 (187)
.+.++++|+|+||.... ++++|+++|++||+|.+|.| .++ .++|||||+|.+.++|..|++.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 34568999999995432 25799999999999999976 443 3799999999999999999999999
Q ss_pred ceeCCceeEEEec
Q 029812 85 FVFLGNRLKVSYA 97 (187)
Q Consensus 85 ~~f~G~~L~V~~A 97 (187)
..|.|++|+|.|+
T Consensus 87 ~~~~gr~l~v~~a 99 (112)
T 2dit_A 87 RWFGGRQITAQAW 99 (112)
T ss_dssp CEETTEECEEEEC
T ss_pred CEECCcEEEEEEe
Confidence 9999999999999
No 191
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.68 E-value=1.7e-17 Score=123.02 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=63.7
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 029812 25 VRNVPSLGCGDDLLKLF------------ATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (187)
Q Consensus 25 V~NLP~~~teedL~~lF------------s~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L 92 (187)
+.|||+.+++++|++.| ++||+|.+|.|++++ ++.++|||||+|.+.++|..|++.|||..|.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666666676666655 999999999999886 47899999999999999999999999999999999
Q ss_pred EEEecC
Q 029812 93 KVSYAS 98 (187)
Q Consensus 93 ~V~~A~ 98 (187)
+|+|+|
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 999985
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=7.6e-17 Score=131.84 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCe--eEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCc----e
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDI--EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN----R 91 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I--~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~----~ 91 (187)
.++++|||+|||+.+++++|+++|++||.| .+|+++.++ +..+|+|||+|.+.++|..|+..|||+.+.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 457899999999999999999999999999 899999875 55679999999999999999999999999987 6
Q ss_pred eEEEec
Q 029812 92 LKVSYA 97 (187)
Q Consensus 92 L~V~~A 97 (187)
+.|.||
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777665
No 193
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.68 E-value=1e-16 Score=122.02 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCC--C---CCHHHHHHhhccCCCeeEEEeccCCC----CCCceeEEEEEEccHHHHHHHHHHhCCceeC
Q 029812 18 DESRYLIVRNVPS--L---GCGDDLLKLFATYGDIEECKPMDAED----CDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (187)
Q Consensus 18 ~es~~LyV~NLP~--~---~teedL~~lFs~fG~I~~V~il~dk~----tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~ 88 (187)
.++++|+++|+-. . -.++||++.|++||+|.+|.|+.++. ++.++|+|||+|.+.++|..|++.|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3789999999842 2 24689999999999999999998864 4678899999999999999999999999999
Q ss_pred CceeEEEecC
Q 029812 89 GNRLKVSYAS 98 (187)
Q Consensus 89 G~~L~V~~A~ 98 (187)
|++|+|.|++
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999994
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=1.1e-17 Score=129.74 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=72.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..++++|||+|||..+++++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|..|+ .|||..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 356789999999999999999999999999987 44555678899999999999999999999 5999999999999999
Q ss_pred cC
Q 029812 97 AS 98 (187)
Q Consensus 97 A~ 98 (187)
+.
T Consensus 88 ~~ 89 (175)
T 1fje_B 88 PK 89 (175)
T ss_dssp CC
T ss_pred CC
Confidence 93
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=125.69 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCC-CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC-CceeEEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVS 95 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG-~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~-G~~L~V~ 95 (187)
.++++|||+|||..+++++|+++|++|| .|.+|.++.+. +|+|||+|.+.++|..|++.|||..+. |++|+|+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4579999999999999999999999999 99999997752 799999999999999999999999999 9999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
||
T Consensus 193 ~a 194 (198)
T 1qm9_A 193 FS 194 (198)
T ss_dssp EE
T ss_pred ee
Confidence 99
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=2.2e-16 Score=131.93 Aligned_cols=74 Identities=26% Similarity=0.367 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
.++++|||+|||+.+++++|+++|++||.|.+|.+.++ +|||||+|.+.++|..|+..|||..+.|+.|+|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 35679999999999999999999999999999999765 799999999999999999999999999999999998
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=4.3e-16 Score=130.17 Aligned_cols=80 Identities=20% Similarity=0.215 Sum_probs=73.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhC-CceeC---Ccee
Q 029812 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD-EFVFL---GNRL 92 (187)
Q Consensus 17 ~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~Ln-G~~f~---G~~L 92 (187)
..++++|||+|||..+++++|+++|++||.|.+|.++.+ .+|.++|||||+|.+.++|..|++.|| |..+. |++|
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 346789999999999999999999999999999999999 689999999999999999999999995 45554 9999
Q ss_pred EEEec
Q 029812 93 KVSYA 97 (187)
Q Consensus 93 ~V~~A 97 (187)
.|.++
T Consensus 172 ~v~~~ 176 (261)
T 3sde_A 172 IVEPM 176 (261)
T ss_dssp EEEEC
T ss_pred EEeec
Confidence 99999
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=4.8e-16 Score=127.37 Aligned_cols=75 Identities=23% Similarity=0.258 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCC-CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC-CceeEEE
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVS 95 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG-~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~-G~~L~V~ 95 (187)
.++++|||+|||..+++++|+++|++|| .|..|+++.+ .+|+|||+|.+.++|..|++.|||..+. |+.|+|+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999999764 2789999999999999999999999999 9999999
Q ss_pred ec
Q 029812 96 YA 97 (187)
Q Consensus 96 ~A 97 (187)
||
T Consensus 224 ~a 225 (229)
T 2adc_A 224 FS 225 (229)
T ss_dssp EC
T ss_pred Ee
Confidence 99
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=3.6e-16 Score=131.00 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCC-CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 18 DESRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 18 ~es~~LyV~NLP~~~teedL~~lFs~fG-~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
..+++|||+|||+.+++++|+++|++|| .|..|.++.++. |.++|||||+|.+.++|..|++.|||..+.|+.|+|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3678999999999999999999999999 999999999865 88999999999999999999999999999999999999
Q ss_pred c
Q 029812 97 A 97 (187)
Q Consensus 97 A 97 (187)
+
T Consensus 194 a 194 (292)
T 2ghp_A 194 S 194 (292)
T ss_dssp C
T ss_pred C
Confidence 9
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=5.7e-16 Score=119.18 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC----C-------CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATY----G-------DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~f----G-------~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f 87 (187)
++++|||+|||+.+++++|+++|++| | .|.++.+..+ +|||||+|.+.++|..|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 7888877655 799999999999999999 8999999
Q ss_pred CCceeEEEecC
Q 029812 88 LGNRLKVSYAS 98 (187)
Q Consensus 88 ~G~~L~V~~A~ 98 (187)
.|++|+|.++.
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99999999983
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=8.2e-16 Score=120.82 Aligned_cols=72 Identities=22% Similarity=0.355 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC----C-------CeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATY----G-------DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~f----G-------~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f 87 (187)
.+++|||+|||+.+++++|+++|++| | .|.++.+.. ++|||||+|.+.++|..|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~------~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET------TTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC------CCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57899999999999999999999999 4 566666544 4899999999999999999 8999999
Q ss_pred CCceeEEEec
Q 029812 88 LGNRLKVSYA 97 (187)
Q Consensus 88 ~G~~L~V~~A 97 (187)
.|+.|+|.++
T Consensus 76 ~g~~i~v~~~ 85 (198)
T 2yh0_A 76 QGQSLKIRRP 85 (198)
T ss_dssp TTEEEEEECC
T ss_pred cCceEEEeCC
Confidence 9999999999
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.59 E-value=3e-15 Score=132.82 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=70.5
Q ss_pred ceeeccCCCCeEEEcC--CCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC-
Q 029812 12 RVYTVCDESRYLIVRN--VPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL- 88 (187)
Q Consensus 12 ~~yt~~~es~~LyV~N--LP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~- 88 (187)
.+.....++++|||+| |+..+++++|+++|++||+|.+|.+.. +||||||+|.+.++|+.||+.|||+.+.
T Consensus 10 ~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 10 GIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp TCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 4555677899999999 578899999999999999999998865 3799999999999999999999999984
Q ss_pred --Cc--eeEEEec
Q 029812 89 --GN--RLKVSYA 97 (187)
Q Consensus 89 --G~--~L~V~~A 97 (187)
|+ .|.|+|+
T Consensus 84 ~~g~~~~ly~~~~ 96 (345)
T 3tht_A 84 DLGQKITLYLNFV 96 (345)
T ss_dssp TTSCEEECEEEEC
T ss_pred ccCCceEEEEEEe
Confidence 45 6888888
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.57 E-value=1.2e-14 Score=110.02 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCC--CC--------CHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee
Q 029812 18 DESRYLIVRNVPS--LG--------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (187)
Q Consensus 18 ~es~~LyV~NLP~--~~--------teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f 87 (187)
.+++.|.+.|+=. .. .++||++.|++||.|.+|.|.++. ++|+|||+|.+.++|..|++.|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4678899999732 21 236899999999999999998763 489999999999999999999999999
Q ss_pred CCceeEEEecC
Q 029812 88 LGNRLKVSYAS 98 (187)
Q Consensus 88 ~G~~L~V~~A~ 98 (187)
.|+.|+|.|++
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999993
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.6e-14 Score=105.81 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=61.2
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCcee
Q 029812 20 SRYLIVRNVP-------SLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (187)
Q Consensus 20 s~~LyV~NLP-------~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L 92 (187)
...|-|.-.+ ..+++++|+++|++||+|.+|.|+. .++|||||+|.+.++|..|++.++| +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4566666544 4578999999999999999999983 5799999999999999999998655 689999
Q ss_pred EEEec
Q 029812 93 KVSYA 97 (187)
Q Consensus 93 ~V~~A 97 (187)
+|.|+
T Consensus 83 ~V~~a 87 (100)
T 2d9o_A 83 KISWL 87 (100)
T ss_dssp EEECS
T ss_pred EEEEc
Confidence 99999
No 205
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.33 E-value=3.3e-12 Score=104.00 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=66.3
Q ss_pred CCeEEEcCCCC-----CCCHHHHHHhhccCCCeeEEEeccC----CCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCc
Q 029812 20 SRYLIVRNVPS-----LGCGDDLLKLFATYGDIEECKPMDA----EDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN 90 (187)
Q Consensus 20 s~~LyV~NLP~-----~~teedL~~lFs~fG~I~~V~il~d----k~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~ 90 (187)
+..+.+.|+-. .-.+++|++.|++||+|.+|.|+++ ..++.++|++||+|.+.++|.+|++.|||..|.|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 34455555422 2346789999999999999999844 45669999999999999999999999999999999
Q ss_pred eeEEEecC
Q 029812 91 RLKVSYAS 98 (187)
Q Consensus 91 ~L~V~~A~ 98 (187)
.|+|+|++
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999994
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.9e-11 Score=92.98 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEcc-HHHHHHHHHHhC--CceeCCceeE
Q 029812 18 DESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRL-FSNARFAKRKLD--EFVFLGNRLK 93 (187)
Q Consensus 18 ~es~~LyV~NLP~~-~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~-~e~A~~Ai~~Ln--G~~f~G~~L~ 93 (187)
..+..|||+||+.. ++.++|+++|++||+|..|.++.+.. .|||.|.+ .++|..|++.|| |..+.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 46789999999999 99999999999999999999999854 59999999 899999999994 8889999999
Q ss_pred EEec
Q 029812 94 VSYA 97 (187)
Q Consensus 94 V~~A 97 (187)
+...
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9877
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=91.22 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=62.7
Q ss_pred cCCCCeEEEcCCCC----CCCH----HHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeC
Q 029812 17 CDESRYLIVRNVPS----LGCG----DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (187)
Q Consensus 17 ~~es~~LyV~NLP~----~~te----edL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~ 88 (187)
.++..||+|.-.|. ..-. .+|.+.|++||+|..++++.|+ +||+|.+.++|.+|++ |||..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 45667899988772 2222 6799999999999999999983 8999999999999998 9999999
Q ss_pred CceeEEEec
Q 029812 89 GNRLKVSYA 97 (187)
Q Consensus 89 G~~L~V~~A 97 (187)
|+.|+|.++
T Consensus 75 Gr~LkV~lk 83 (91)
T 2dnr_A 75 NRTITIALK 83 (91)
T ss_dssp TEEEEEEEC
T ss_pred CeEEEEEeC
Confidence 999999999
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=1.9e-10 Score=85.21 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=62.9
Q ss_pred cCCCCeEEEcCCCCC-----C-CH---HHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCcee
Q 029812 17 CDESRYLIVRNVPSL-----G-CG---DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (187)
Q Consensus 17 ~~es~~LyV~NLP~~-----~-te---edL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f 87 (187)
.++..||+|.-++.. . .+ .+|.+.|++||+|..+++..|+ +||+|.+.++|.+||+ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 466789999998753 1 21 5699999999999999999983 9999999999999998 999999
Q ss_pred CCceeEEEec
Q 029812 88 LGNRLKVSYA 97 (187)
Q Consensus 88 ~G~~L~V~~A 97 (187)
.|+.|+|.+-
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999875
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=7e-07 Score=68.02 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=66.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccC-----CCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATY-----GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~f-----G~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V 94 (187)
.++|=+-|||..++...++.+.++| |.|..|.+..|. |=|+|+|.|...|-+|.=.|||..|.|++|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 6889999999999999999999999 999999999884 45999999999999999999999999999999
Q ss_pred Ee
Q 029812 95 SY 96 (187)
Q Consensus 95 ~~ 96 (187)
.=
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 83
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.28 E-value=1.7e-06 Score=64.95 Aligned_cols=72 Identities=24% Similarity=0.191 Sum_probs=63.6
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEE
Q 029812 20 SRYLIVRNVPSLG-C----GDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (187)
Q Consensus 20 s~~LyV~NLP~~~-t----eedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V 94 (187)
.++|+|.|||..+ . .+.+++||.+|+++.....++.- | -.-|.|.++++|.+|...|+|..|.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999998754 2 25679999999999999888762 2 5799999999999999999999999999999
Q ss_pred Eec
Q 029812 95 SYA 97 (187)
Q Consensus 95 ~~A 97 (187)
-|+
T Consensus 79 YFg 81 (104)
T 1wey_A 79 YFA 81 (104)
T ss_dssp ECC
T ss_pred Eec
Confidence 999
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.09 E-value=2.8e-05 Score=56.76 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=64.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCC--CceeEEEEEEccHHHHHHHHHHhCCceeCCc-----eeE
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCD--PFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-----RLK 93 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg--~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~-----~L~ 93 (187)
++|-||+||+.+|++++.+..+..+.+.-..-+..+.+. ..-..|+|.|.+.+++..-.+.+||+.|.+. +-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 478999999999999999999999987776655554322 2235799999999999999999999999753 346
Q ss_pred EEecCCc
Q 029812 94 VSYASQF 100 (187)
Q Consensus 94 V~~A~~~ 100 (187)
|+|||-.
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 9999643
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.76 E-value=6.8e-05 Score=55.76 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=46.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhC
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD 83 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~Ln 83 (187)
..++| ++|+.....||.++|+.||.|. |+-+.|. .|||.|.+++.|..|++.+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 44566 9999999999999999999664 7777773 79999999999999998763
No 213
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.56 E-value=0.00028 Score=52.13 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCC--CceeEEEEEEccHHHHHHHHHHhCCceeCCc-----ee
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCD--PFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-----RL 92 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg--~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~-----~L 92 (187)
+-+|-||.||+.+|++++.+.++..=++.-..-+..+.+- ..-..|+|.|.+.++...-.+.+||+.|.+. +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4579999999999999999888877655333333332221 1123699999999999999999999999753 45
Q ss_pred EEEecCC
Q 029812 93 KVSYASQ 99 (187)
Q Consensus 93 ~V~~A~~ 99 (187)
.|+|||-
T Consensus 89 ~VE~APy 95 (97)
T 2l08_A 89 VVEFAPF 95 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 6899863
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.42 E-value=0.00024 Score=52.90 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=46.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhC
Q 029812 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD 83 (187)
Q Consensus 22 ~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~Ln 83 (187)
.++| ++|+.....||..||++||.| .|+-+.|. .|||.|.+++.|..|++.+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3555 999999999999999999955 47778773 79999999999999999875
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.0013 Score=49.18 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=60.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcc-C----CCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeE
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFAT-Y----GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~-f----G~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~ 93 (187)
-.++|.|.|||+.+.++-|.-.|+. - |+|++|.... +-|+|+|.+.+.|++.++. .-+.|+|.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3578999999999999999999998 2 7888888765 3699999999999988853 46889999999
Q ss_pred EEecCC
Q 029812 94 VSYASQ 99 (187)
Q Consensus 94 V~~A~~ 99 (187)
|.-.+.
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 976643
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.001 Score=50.80 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=57.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCc-eeEEEec
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-RLKVSYA 97 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~-~L~V~~A 97 (187)
.+.|.|-+.|+. ....+...|++||+|.+...... ...-.|+|.+..+|++|+. .||..+.|. .|-|...
T Consensus 24 ~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 578999999986 56778889999999999987322 4589999999999999997 499999864 4566654
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.69 E-value=0.0036 Score=47.38 Aligned_cols=34 Identities=6% Similarity=-0.105 Sum_probs=28.0
Q ss_pred EEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCC
Q 029812 49 ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84 (187)
Q Consensus 49 ~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG 84 (187)
.++|+.+.. .++|||||+|.+.++|++|++.+++
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcc
Confidence 456666643 6899999999999999999988764
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.68 E-value=0.0034 Score=48.75 Aligned_cols=77 Identities=19% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEE-EeccCC--------CCCC-----ceeEEEEEEccHHHHHHHHHHhCC
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC-KPMDAE--------DCDP-----FTDVYFIKFRLFSNARFAKRKLDE 84 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V-~il~dk--------~tg~-----~rG~AFV~F~~~e~A~~Ai~~LnG 84 (187)
...-|.|-+.|+. ....+-+.|++||.|.+- .+.++. ...+ ..+.-.|+|++..+|.+|+. -||
T Consensus 6 ~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 4467889999875 556677889999999873 222110 0000 23477999999999999997 599
Q ss_pred ceeCCceeEEEec
Q 029812 85 FVFLGNRLKVSYA 97 (187)
Q Consensus 85 ~~f~G~~L~V~~A 97 (187)
..|.|..|-|...
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999987888776
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.27 E-value=0.0012 Score=49.94 Aligned_cols=38 Identities=8% Similarity=-0.095 Sum_probs=36.0
Q ss_pred CCceeEEEEEEccHHHHHHHHHHh-CCceeCCceeEEEec
Q 029812 59 DPFTDVYFIKFRLFSNARFAKRKL-DEFVFLGNRLKVSYA 97 (187)
Q Consensus 59 g~~rG~AFV~F~~~e~A~~Ai~~L-nG~~f~G~~L~V~~A 97 (187)
...+|+++|+|.+.++|++|++.| ||..+.| .|.+.++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a 48 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDA 48 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccc
Confidence 467999999999999999999999 9999999 9999988
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.19 E-value=0.0028 Score=58.13 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=41.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHH
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR 80 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~ 80 (187)
+.|+|. .|....+.+|.+.|++||+|.++..-+++ .-||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 579998 78889999999999999999999877663 2599999999999996653
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.58 E-value=0.17 Score=46.51 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=46.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhC
Q 029812 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD 83 (187)
Q Consensus 20 s~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~Ln 83 (187)
+..++|+ +|..+...+|.++|+.||.| +|..+.+. .|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 3566666 88888999999999999964 67777763 69999999999999999885
No 222
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=77.68 E-value=0.32 Score=43.55 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=27.2
Q ss_pred HHHHhhccCCCeeEEEeccC----C-CCCCceeEE--EEEEccHHHHH
Q 029812 36 DLLKLFATYGDIEECKPMDA----E-DCDPFTDVY--FIKFRLFSNAR 76 (187)
Q Consensus 36 dL~~lFs~fG~I~~V~il~d----k-~tg~~rG~A--FV~F~~~e~A~ 76 (187)
.|.+||.++|+|..|.++.. + .+....|++ |+.|.+..+|.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~ 55 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAP 55 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCccccc
Confidence 48999999999999854432 2 233344555 88887755444
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=48.49 E-value=23 Score=23.24 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=37.1
Q ss_pred CCHHHHHHhhccCCC-----eeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEec
Q 029812 32 GCGDDLLKLFATYGD-----IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (187)
Q Consensus 32 ~teedL~~lFs~fG~-----I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~A 97 (187)
+...+|-.++..-|. |=.|.+..+ |.||.-.. ..|..+++.|++..+.|+.++|..+
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 455566655554444 445666554 78888654 5578899999999999999999876
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=37.48 E-value=74 Score=19.79 Aligned_cols=55 Identities=11% Similarity=-0.105 Sum_probs=44.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHh
Q 029812 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82 (187)
Q Consensus 21 ~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~L 82 (187)
.+|.|.|+.-..+...+...+.. ..|..+.+-.. .+-+-|.|.+.++-..|++.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 46889999888888999999999 89998887654 567889988666667777653
No 225
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=37.18 E-value=1.2e+02 Score=22.11 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=49.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCceeCCceeEEEe
Q 029812 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (187)
Q Consensus 19 es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~~f~G~~L~V~~ 96 (187)
.+.-|-|-|+|..+...++--.....|----|..+. |.|.|.|.+..+...|+..|=.+ ....|+|+.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 456678899999888888766666677666666664 57999999999999999877332 233444443
No 226
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=35.40 E-value=19 Score=26.25 Aligned_cols=28 Identities=4% Similarity=-0.205 Sum_probs=0.0
Q ss_pred eEEEEEEccHHHHHHHHHHhCCceeCCc
Q 029812 63 DVYFIKFRLFSNARFAKRKLDEFVFLGN 90 (187)
Q Consensus 63 G~AFV~F~~~e~A~~Ai~~LnG~~f~G~ 90 (187)
-++|+.|++...|..|+..++|..-.|+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ----------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCCC
Confidence 3789999999999999999999776553
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=34.91 E-value=77 Score=21.93 Aligned_cols=39 Identities=0% Similarity=-0.012 Sum_probs=29.5
Q ss_pred eeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHhCCc-eeCCc
Q 029812 47 IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF-VFLGN 90 (187)
Q Consensus 47 I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~LnG~-~f~G~ 90 (187)
|.+|.+... +.||-||++...++...+++...|- -|-|.
T Consensus 40 i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV~gfvg~ 79 (92)
T 3lpe_A 40 VYSILASES-----LKGYVLVEAETKGDVEELIKGMPRVRGIVPG 79 (92)
T ss_dssp EEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTEEEECSS
T ss_pred EEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCceEeCCC
Confidence 666666543 7899999999999999999887763 34443
No 228
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.31 E-value=94 Score=24.59 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=35.2
Q ss_pred eEEEcCCCC-C--------CCHHHHHHhh--ccCCCeeEEEeccCCCCCCceeEEEEEEccH
Q 029812 22 YLIVRNVPS-L--------GCGDDLLKLF--ATYGDIEECKPMDAEDCDPFTDVYFIKFRLF 72 (187)
Q Consensus 22 ~LyV~NLP~-~--------~teedL~~lF--s~fG~I~~V~il~dk~tg~~rG~AFV~F~~~ 72 (187)
..+|-|+|. . ....+|.+.| +.|.++. |+.+.++. -.+|+|.|.|..-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCC
Confidence 467788876 2 2347899977 9999976 66666643 3689999999983
No 229
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=31.23 E-value=7.6 Score=30.53 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=30.9
Q ss_pred eeccCCCCeEEEcCCCCCCCHHHHHHhhccCCCeeEEEecc
Q 029812 14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMD 54 (187)
Q Consensus 14 yt~~~es~~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~ 54 (187)
|.+|.+..-++..++|. ...|+.+|.-||.+..|+|+.
T Consensus 124 ~~iNg~~~g~~~~~V~~---~~pLwavvDvyG~t~~V~il~ 161 (168)
T 2yue_A 124 YGINNEEKGVILTGIDT---RSLLWTVIDIYGNCTGIEFLD 161 (168)
T ss_dssp EEESSCEEEEEEECCCC---SSCCEEEEECCSSCSEEEEEC
T ss_pred EEECCCccEEEEcCCCC---CCceEEEEEccCCeEEEEEec
Confidence 55677777788888883 356999999999999999874
No 230
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=26.70 E-value=52 Score=30.64 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHhh----ccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHHHHh
Q 029812 27 NVPSLGCGDDLLKLF----ATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82 (187)
Q Consensus 27 NLP~~~teedL~~lF----s~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai~~L 82 (187)
..+...+.-||..|| +.+|-|.++.+-.-+. -..+.++++.|.+.++|..|++.+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 345555556888888 3899999986543321 234668999999999999988765
No 231
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=25.41 E-value=53 Score=29.45 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=29.9
Q ss_pred HHHHhh--ccCCCeeEEEeccCCCCCCceeEEEEEEccHHHHHHHH
Q 029812 36 DLLKLF--ATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79 (187)
Q Consensus 36 dL~~lF--s~fG~I~~V~il~dk~tg~~rG~AFV~F~~~e~A~~Ai 79 (187)
+|..|| +.+|-|.++.+-..+. ......+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 567777 4799999997644322 233557899999988876643
No 232
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.32 E-value=95 Score=21.81 Aligned_cols=26 Identities=4% Similarity=0.061 Sum_probs=20.5
Q ss_pred CeeEEEeccCCCCCCceeEEEEEEcc
Q 029812 46 DIEECKPMDAEDCDPFTDVYFIKFRL 71 (187)
Q Consensus 46 ~I~~V~il~dk~tg~~rG~AFV~F~~ 71 (187)
+|.+|++-.-...|+-+|+|=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57777776656678899999999975
No 233
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=20.39 E-value=1.5e+02 Score=17.67 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=37.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCCeeEEEeccCCCCCCceeEEEEEEcc---HHHHHHHHHH
Q 029812 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRL---FSNARFAKRK 81 (187)
Q Consensus 22 ~LyV~NLP~~~teedL~~lFs~fG~I~~V~il~dk~tg~~rG~AFV~F~~---~e~A~~Ai~~ 81 (187)
++.|.|+.-..+...+...+.....|..+.+-.. .+-+.|.|.. .++-..|++.
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHH
Confidence 5778888776677888888899888988877554 3567888843 3344445443
Done!