Query 029814
Match_columns 187
No_of_seqs 173 out of 1099
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 04:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00403 HMA: Heavy-metal-asso 99.4 4.4E-12 9.5E-17 86.0 8.1 57 125-181 1-61 (62)
2 COG2608 CopZ Copper chaperone 99.2 5.8E-11 1.3E-15 84.2 8.7 63 122-184 2-69 (71)
3 KOG1603 Copper chaperone [Inor 99.0 4.7E-09 1E-13 74.6 8.4 65 121-185 4-70 (73)
4 KOG4656 Copper chaperone for s 98.7 5.3E-08 1.2E-12 82.9 7.8 64 122-185 7-71 (247)
5 KOG0207 Cation transport ATPas 98.6 3.4E-08 7.3E-13 97.7 5.0 133 4-186 1-138 (951)
6 KOG0207 Cation transport ATPas 98.4 2.1E-07 4.5E-12 92.3 5.4 60 122-181 146-209 (951)
7 PRK10671 copA copper exporting 98.2 2.4E-06 5.2E-11 84.2 7.6 62 123-184 100-163 (834)
8 PRK10671 copA copper exporting 98.2 3.6E-06 7.7E-11 83.0 8.1 63 121-185 2-66 (834)
9 PLN02957 copper, zinc superoxi 98.2 1.3E-05 2.7E-10 68.8 9.6 65 122-186 6-71 (238)
10 COG2217 ZntA Cation transport 97.9 3.9E-05 8.5E-10 75.3 7.6 59 122-181 2-65 (713)
11 TIGR00003 copper ion binding p 97.8 0.00034 7.3E-09 43.1 8.2 60 122-181 2-65 (68)
12 PRK11033 zntA zinc/cadmium/mer 96.3 0.015 3.2E-07 57.3 8.2 61 121-181 52-114 (741)
13 TIGR02052 MerP mercuric transp 92.8 2 4.2E-05 28.9 9.1 62 123-184 24-90 (92)
14 PRK13748 putative mercuric red 82.3 7.6 0.00017 36.4 8.4 60 125-184 3-66 (561)
15 cd00371 HMA Heavy-metal-associ 78.2 8.4 0.00018 20.6 7.3 54 127-180 3-59 (63)
16 COG1888 Uncharacterized protei 74.5 9.6 0.00021 28.9 5.3 44 138-181 23-74 (97)
17 PF02680 DUF211: Uncharacteriz 74.1 6.7 0.00014 29.8 4.4 59 122-181 5-72 (95)
18 PRK14054 methionine sulfoxide 57.5 35 0.00077 28.2 6.0 28 133-160 10-37 (172)
19 PF01206 TusA: Sulfurtransfera 57.5 32 0.00068 23.2 4.9 48 125-181 2-52 (70)
20 PF01883 DUF59: Domain of unkn 56.1 21 0.00045 24.4 3.8 32 123-154 35-72 (72)
21 PRK13014 methionine sulfoxide 47.4 52 0.0011 27.6 5.5 37 119-160 6-42 (186)
22 PRK00058 methionine sulfoxide 39.8 97 0.0021 26.7 6.1 35 120-159 44-78 (213)
23 PRK10553 assembly protein for 31.9 1.9E+02 0.0042 21.2 5.9 42 136-177 19-61 (87)
24 PF04502 DUF572: Family of unk 31.3 37 0.00081 30.5 2.4 23 119-141 28-52 (324)
25 PRK11018 hypothetical protein; 31.1 1.9E+02 0.0041 20.3 5.8 50 123-181 8-60 (78)
26 PF14437 MafB19-deam: MafB19-l 29.1 1.5E+02 0.0031 24.2 5.2 42 121-163 99-142 (146)
27 PRK05528 methionine sulfoxide 28.3 64 0.0014 26.3 3.0 44 133-176 8-68 (156)
28 TIGR03406 FeS_long_SufT probab 27.1 81 0.0018 26.1 3.5 20 137-156 134-153 (174)
29 TIGR02945 SUF_assoc FeS assemb 24.0 89 0.0019 22.6 2.9 36 122-157 39-78 (99)
30 cd03421 SirA_like_N SirA_like_ 22.5 2.4E+02 0.0052 18.8 4.6 46 126-181 2-50 (67)
31 PF03927 NapD: NapD protein; 22.0 3E+02 0.0065 19.5 6.2 42 136-178 17-59 (79)
32 PRK05550 bifunctional methioni 20.2 2.9E+02 0.0062 24.8 5.8 28 133-160 134-161 (283)
No 1
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.35 E-value=4.4e-12 Score=86.00 Aligned_cols=57 Identities=44% Similarity=0.673 Sum_probs=53.6
Q ss_pred EEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCC
Q 029814 125 VMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMGH---ISPTGVLESISKVKR 181 (187)
Q Consensus 125 ~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g~---v~~eeIveaIekaGk 181 (187)
+|.| ||+|++|+.+|+++|.+++||.++.+|+.+++++|.++ +++++|.++|+++||
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 5899 99999999999999999999999999999999999965 467999999999997
No 2
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.24 E-value=5.8e-11 Score=84.18 Aligned_cols=63 Identities=25% Similarity=0.486 Sum_probs=56.3
Q ss_pred eEEEEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEE--e-cCCHHHHHHHHHhCCC-eEe
Q 029814 122 QVVVMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVM--G-HISPTGVLESISKVKR-AEF 184 (187)
Q Consensus 122 ~tv~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~--g-~v~~eeIveaIekaGk-AeL 184 (187)
.+.+|+| ||+|++|+..|+++|.+++||.++++|+..+.+.|. + ..+.++|.++|+++|| ++.
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeee
Confidence 4678999 999999999999999999999999999999777776 3 4799999999999998 443
No 3
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.96 E-value=4.7e-09 Score=74.59 Aligned_cols=65 Identities=42% Similarity=0.889 Sum_probs=59.9
Q ss_pred eeEEEEEecccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCC-C-eEec
Q 029814 121 FQVVVMRVSLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMGHISPTGVLESISKVK-R-AEFW 185 (187)
Q Consensus 121 ~~tv~f~VGM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g~v~~eeIveaIekaG-k-AeL~ 185 (187)
++...+.++|+|.+|..+|++.|..++||.++.+|..+++++|.+.+++..|++.|.+.| + +++|
T Consensus 4 ~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 4 IKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred ccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEe
Confidence 456778889999999999999999999999999999999999999999999999999987 5 6665
No 4
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.70 E-value=5.3e-08 Score=82.92 Aligned_cols=64 Identities=23% Similarity=0.472 Sum_probs=59.9
Q ss_pred eEEEEEecccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCC-eEec
Q 029814 122 QVVVMRVSLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMGHISPTGVLESISKVKR-AEFW 185 (187)
Q Consensus 122 ~tv~f~VGM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g~v~~eeIveaIekaGk-AeL~ 185 (187)
-+.+|.|.|+|.+|++.|+..|..++||.++++|+.++.+.|.+...+.+|++.|+..|+ |.|.
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~ 71 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLR 71 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEe
Confidence 457899999999999999999999999999999999999999999999999999999996 7663
No 5
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.62 E-value=3.4e-08 Score=97.74 Aligned_cols=133 Identities=20% Similarity=0.339 Sum_probs=100.9
Q ss_pred cccceeccccceeeeccCCCCCeeEeecCCCCCCCCcccCCCCcccccceeeeehhhccCCCCCCCcccCCcccccCchh
Q 029814 4 RGLMCQSTAAATAVCMPNDSASSVIVPRSRRPPADDHYRNTPIDDDHTRLIKYSKLIDNSHHPPSSNYKRSLHFVPSTSS 83 (187)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 83 (187)
.||+|++| + .|++..+++.| |.-...+. +-..++=|-|. ...+.. -.+ ..
T Consensus 1 ~gmtc~ac-------~-----~si~~~~~~~~-g~~~i~vs--l~~~~~~v~~~-~~~~~~------~i~--------~~ 50 (951)
T KOG0207|consen 1 KGMTCSAC-------S-----NSIEKAISRKP-GVQKIEVS--LAQKRANVSYD-NIVSPE------SIK--------ET 50 (951)
T ss_pred CCccHHHH-------h-----hhHHHHHhcCC-CceeEEEE--eccccceEEEe-eccCHH------HHH--------HH
Confidence 39999999 7 89999999866 76666666 55555557776 333222 111 22
Q ss_pred hccccccCCCccCCCCCCCCCCCCccccCCCCCCCCceeEEEEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEE
Q 029814 84 IKRQAQDDIHSHHDPKPKPNPKSMPLIKLPLASSDQVFQVVVMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVT 162 (187)
Q Consensus 84 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~tv~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVt 162 (187)
|+.++|+....+.... ...+..|++ ||+|.+|+..|++.|+.++|+.++.+.+...+..
T Consensus 51 ied~gf~~~~~~~~~~--------------------~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~ 110 (951)
T KOG0207|consen 51 IEDMGFEASLLSDSEI--------------------TASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAE 110 (951)
T ss_pred hhcccceeeecccCcc--------------------ccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeecccee
Confidence 7778777766553111 111668999 9999999999999999999999999999999999
Q ss_pred EEec---CCHHHHHHHHHhCCC-eEecc
Q 029814 163 VMGH---ISPTGVLESISKVKR-AEFWP 186 (187)
Q Consensus 163 V~g~---v~~eeIveaIekaGk-AeL~s 186 (187)
+.++ .+++.+.+.|++.|+ +++++
T Consensus 111 v~~dp~v~s~~~~~e~ie~~gf~a~~i~ 138 (951)
T KOG0207|consen 111 VIYDPAVTSPDSIAESIEDLGFSAELIE 138 (951)
T ss_pred EEECCcccCchhHHHHHHhcCccceehh
Confidence 9854 789999999999998 87764
No 6
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.45 E-value=2.1e-07 Score=92.29 Aligned_cols=60 Identities=27% Similarity=0.557 Sum_probs=56.0
Q ss_pred eEEEEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCC
Q 029814 122 QVVVMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMGH---ISPTGVLESISKVKR 181 (187)
Q Consensus 122 ~tv~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g~---v~~eeIveaIekaGk 181 (187)
+++.|.| ||.|.+|..+|++.|.+++||.++++++.++++.|.++ ..+.++++.|+..|+
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~ 209 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGF 209 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcc
Confidence 6789999 99999999999999999999999999999999999853 689999999999986
No 7
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.25 E-value=2.4e-06 Score=84.25 Aligned_cols=62 Identities=24% Similarity=0.507 Sum_probs=54.4
Q ss_pred EEEEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCC-eEe
Q 029814 123 VVVMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMGHISPTGVLESISKVKR-AEF 184 (187)
Q Consensus 123 tv~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g~v~~eeIveaIekaGk-AeL 184 (187)
++.+.+ ||+|.+|...+++.+.+++||..+.+++..++..+.+..+...+.+.+++.|| +.+
T Consensus 100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~ 163 (834)
T PRK10671 100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEA 163 (834)
T ss_pred eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCccc
Confidence 567889 99999999999999999999999999999999888755677888888898887 544
No 8
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.22 E-value=3.6e-06 Score=83.04 Aligned_cols=63 Identities=21% Similarity=0.382 Sum_probs=55.2
Q ss_pred eeEEEEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCC-eEec
Q 029814 121 FQVVVMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMGHISPTGVLESISKVKR-AEFW 185 (187)
Q Consensus 121 ~~tv~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g~v~~eeIveaIekaGk-AeL~ 185 (187)
+++++|.| ||+|++|+.+|+++|++++||..+++++. +.++.+..+.+.+.+.|++.|| +++.
T Consensus 2 ~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~ 66 (834)
T PRK10671 2 SQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVS 66 (834)
T ss_pred CeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCccccc
Confidence 35789999 99999999999999999999999999994 5566666789999999999998 6653
No 9
>PLN02957 copper, zinc superoxide dismutase
Probab=98.17 E-value=1.3e-05 Score=68.78 Aligned_cols=65 Identities=25% Similarity=0.522 Sum_probs=58.5
Q ss_pred eEEEEEecccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEecCCHHHHHHHHHhCCC-eEecc
Q 029814 122 QVVVMRVSLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMGHISPTGVLESISKVKR-AEFWP 186 (187)
Q Consensus 122 ~tv~f~VGM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g~v~~eeIveaIekaGk-AeL~s 186 (187)
.++.|.++|+|.+|+.+|++.|++++||..+.+++..+++.|.+......+.+.|++.|| +++++
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~ 71 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIG 71 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEec
Confidence 456678899999999999999999999999999999999999877788899999999998 77754
No 10
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.86 E-value=3.9e-05 Score=75.29 Aligned_cols=59 Identities=25% Similarity=0.570 Sum_probs=53.4
Q ss_pred eEEEEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEec---CC-HHHHHHHHHhCCC
Q 029814 122 QVVVMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMGH---IS-PTGVLESISKVKR 181 (187)
Q Consensus 122 ~tv~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g~---v~-~eeIveaIekaGk 181 (187)
.+.+|.| ||+|.+|+.+|| +|++++||..+.+|+.++++.|..+ .+ .+++...+++.||
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy 65 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGY 65 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCc
Confidence 3568999 999999999999 9999999999999999999999853 34 7899999999997
No 11
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.76 E-value=0.00034 Score=43.07 Aligned_cols=60 Identities=28% Similarity=0.464 Sum_probs=50.5
Q ss_pred eEEEEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhCCC
Q 029814 122 QVVVMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMGH---ISPTGVLESISKVKR 181 (187)
Q Consensus 122 ~tv~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g~---v~~eeIveaIekaGk 181 (187)
.+..+.| |++|..|...+++.++..+++....+++....+.+... .....+...+...|+
T Consensus 2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 65 (68)
T TIGR00003 2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGY 65 (68)
T ss_pred cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 3467999 99999999999999999999999999999999888742 466777777777775
No 12
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.32 E-value=0.015 Score=57.33 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=50.9
Q ss_pred eeEEEEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEec-CCHHHHHHHHHhCCC
Q 029814 121 FQVVVMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMGH-ISPTGVLESISKVKR 181 (187)
Q Consensus 121 ~~tv~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g~-v~~eeIveaIekaGk 181 (187)
..+..+.+ ||+|.+|..++++.+.+++||..+.+++.++++.+..+ ...+++.+.+++.||
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy 114 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGF 114 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhccc
Confidence 34567889 99999999999999999999999999999999888643 122667778888887
No 13
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=92.79 E-value=2 Score=28.93 Aligned_cols=62 Identities=19% Similarity=0.370 Sum_probs=46.4
Q ss_pred EEEEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhCCC-eEe
Q 029814 123 VVVMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMG---HISPTGVLESISKVKR-AEF 184 (187)
Q Consensus 123 tv~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g---~v~~eeIveaIekaGk-AeL 184 (187)
+..+.+ ++.|..|...++..+...+|+....++.......+.. ......+...+...|+ +++
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 90 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL 90 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 456778 9999999999999999999988888888877766552 2355555566666775 443
No 14
>PRK13748 putative mercuric reductase; Provisional
Probab=82.32 E-value=7.6 Score=36.38 Aligned_cols=60 Identities=20% Similarity=0.433 Sum_probs=46.2
Q ss_pred EEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEe--cCCHHHHHHHHHhCCC-eEe
Q 029814 125 VMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMG--HISPTGVLESISKVKR-AEF 184 (187)
Q Consensus 125 ~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g--~v~~eeIveaIekaGk-AeL 184 (187)
.+.+ +|+|.+|..+++..+...+++....+++..+...+.. ......+...+...|+ .++
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~ 66 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATL 66 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeec
Confidence 4668 9999999999999999999988889999888876663 2355566666666775 443
No 15
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=78.16 E-value=8.4 Score=20.56 Aligned_cols=54 Identities=41% Similarity=0.703 Sum_probs=36.4
Q ss_pred Ee-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhCC
Q 029814 127 RV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMGH--ISPTGVLESISKVK 180 (187)
Q Consensus 127 ~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g~--v~~eeIveaIekaG 180 (187)
.+ ++.|..|...++..+...+|+.....++......+... .....+...+...|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAG 59 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHHHcC
Confidence 46 88999999999998888888777777776666555432 24444433444433
No 16
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.47 E-value=9.6 Score=28.95 Aligned_cols=44 Identities=30% Similarity=0.475 Sum_probs=31.0
Q ss_pred HHHHHhhccCCceEEEEec-------CCCEEEEEe-cCCHHHHHHHHHhCCC
Q 029814 138 KLKKHLSKMEGVTSFSIDL-------ETKRVTVMG-HISPTGVLESISKVKR 181 (187)
Q Consensus 138 kIekaL~~l~GV~sV~Vdl-------~s~kVtV~g-~v~~eeIveaIekaGk 181 (187)
-+-+.|.+++||..+++.+ .+-+++|+| +++.++|.+.|++.|-
T Consensus 23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg 74 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGG 74 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCC
Confidence 3455677778876655432 344566666 4899999999999984
No 17
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=74.14 E-value=6.7 Score=29.82 Aligned_cols=59 Identities=31% Similarity=0.440 Sum_probs=37.6
Q ss_pred eEEEEEe-cccchhHHHHHHHHhhccCCceEEEEec-----CCCE--EEEEec-CCHHHHHHHHHhCCC
Q 029814 122 QVVVMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDL-----ETKR--VTVMGH-ISPTGVLESISKVKR 181 (187)
Q Consensus 122 ~tv~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl-----~s~k--VtV~g~-v~~eeIveaIekaGk 181 (187)
.++.|-| --+-++ .-.+-+.|..++||..+++.+ .+.. ++|+|. ++.++|.++|++.|-
T Consensus 5 rRlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg 72 (95)
T PF02680_consen 5 RRLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGG 72 (95)
T ss_dssp EEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-
T ss_pred eEEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCC
Confidence 4555665 224343 335567788999988776543 3333 444565 899999999999983
No 18
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=57.54 E-value=35 Score=28.23 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.4
Q ss_pred hhHHHHHHHHhhccCCceEEEEecCCCE
Q 029814 133 QGCAGKLKKHLSKMEGVTSFSIDLETKR 160 (187)
Q Consensus 133 ~sCa~kIekaL~~l~GV~sV~Vdl~s~k 160 (187)
++|-+-++..+..++||.++.+-+.++.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCC
Confidence 6788888999999999999999887664
No 19
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=57.51 E-value=32 Score=23.24 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=35.1
Q ss_pred EEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEe--cCCHHHHHHHHHhCCC
Q 029814 125 VMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMG--HISPTGVLESISKVKR 181 (187)
Q Consensus 125 ~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g--~v~~eeIveaIekaGk 181 (187)
++.+ |+.|+....++.++|.+++. .+.+.|.. ......|...+++.|+
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~~~~~di~~~~~~~g~ 52 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDPAAVEDIPRWCEENGY 52 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESSTTHHHHHHHHHHHHTE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCccHHHHHHHHHHHCCC
Confidence 5778 99999999999999999743 23444443 2456778888888886
No 20
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=56.11 E-value=21 Score=24.37 Aligned_cols=32 Identities=22% Similarity=0.476 Sum_probs=19.6
Q ss_pred EEEEEecccchhH------HHHHHHHhhccCCceEEEE
Q 029814 123 VVVMRVSLHCQGC------AGKLKKHLSKMEGVTSFSI 154 (187)
Q Consensus 123 tv~f~VGM~C~sC------a~kIekaL~~l~GV~sV~V 154 (187)
++.|.+.+...+| ...|+++|..++|+.+++|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 4445553444343 3677888999999988875
No 21
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=47.39 E-value=52 Score=27.63 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=28.6
Q ss_pred CceeEEEEEecccchhHHHHHHHHhhccCCceEEEEecCCCE
Q 029814 119 QVFQVVVMRVSLHCQGCAGKLKKHLSKMEGVTSFSIDLETKR 160 (187)
Q Consensus 119 ~~~~tv~f~VGM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~k 160 (187)
..++++.|. ++|-+-++..+..++||.++.+-+.++.
T Consensus 6 ~~~~~a~~a-----gGCFWg~E~~f~~l~GV~~t~vGYagG~ 42 (186)
T PRK13014 6 DGMETATFA-----GGCFWGVEGVFQHVPGVVSVVSGYSGGH 42 (186)
T ss_pred CCccEEEEe-----cCCceeeHHHHccCCCEEEEEeeecCCC
Confidence 345555555 6778888888999999999999887664
No 22
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=39.76 E-value=97 Score=26.65 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=28.0
Q ss_pred ceeEEEEEecccchhHHHHHHHHhhccCCceEEEEecCCC
Q 029814 120 VFQVVVMRVSLHCQGCAGKLKKHLSKMEGVTSFSIDLETK 159 (187)
Q Consensus 120 ~~~tv~f~VGM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~ 159 (187)
.++++.|. ++|-+-+|..+.+++||.++.+-+.++
T Consensus 44 ~~~~a~fa-----gGCFWg~E~~F~~l~GV~~t~vGYagG 78 (213)
T PRK00058 44 GMEQAIFG-----MGCFWGAERLFWQLPGVYSTAVGYAGG 78 (213)
T ss_pred CccEEEEE-----ccCcchhHHHHhcCCCEEEEEeeecCC
Confidence 35555555 778888899999999999999988744
No 23
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=31.92 E-value=1.9e+02 Score=21.23 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHHHHhhccCCceEEEEecCCCEEEEE-ecCCHHHHHHHHH
Q 029814 136 AGKLKKHLSKMEGVTSFSIDLETKRVTVM-GHISPTGVLESIS 177 (187)
Q Consensus 136 a~kIekaL~~l~GV~sV~Vdl~s~kVtV~-g~v~~eeIveaIe 177 (187)
...+.+.|..++|+.-.-.|...+|+.|+ ...+...+.+.|.
T Consensus 19 ~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~ 61 (87)
T PRK10553 19 ISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIE 61 (87)
T ss_pred HHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHH
Confidence 67889999999999866677777888776 2244444444333
No 24
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=31.28 E-value=37 Score=30.46 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=17.1
Q ss_pred CceeEEEEEe--cccchhHHHHHHH
Q 029814 119 QVFQVVVMRV--SLHCQGCAGKLKK 141 (187)
Q Consensus 119 ~~~~tv~f~V--GM~C~sCa~kIek 141 (187)
....+|.|.+ .|.|.+|...|-+
T Consensus 28 ~~~~~VRf~~Pf~i~C~~C~~~I~k 52 (324)
T PF04502_consen 28 QGILTVRFMMPFNIWCNTCGEYIYK 52 (324)
T ss_pred CcceEEEEcCCccCcCCCCcccccc
Confidence 4455677777 8899999988754
No 25
>PRK11018 hypothetical protein; Provisional
Probab=31.10 E-value=1.9e+02 Score=20.34 Aligned_cols=50 Identities=10% Similarity=-0.020 Sum_probs=37.0
Q ss_pred EEEEEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEE--ecCCHHHHHHHHHhCCC
Q 029814 123 VVVMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVM--GHISPTGVLESISKVKR 181 (187)
Q Consensus 123 tv~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~--g~v~~eeIveaIekaGk 181 (187)
..++.+ |+.|+.=.-+.+++|.+++. .+.+.|. .......|...+++.|+
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~~a~~di~~~~~~~G~ 60 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCPQSINNIPLDARNHGY 60 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCccHHHHHHHHHHHcCC
Confidence 357888 99999999999999998852 2333443 23566778888888886
No 26
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=29.10 E-value=1.5e+02 Score=24.23 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=32.8
Q ss_pred eeEEEEEe-cccchhHHHHHHHHhhccCCceEEEEecC-CCEEEE
Q 029814 121 FQVVVMRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLE-TKRVTV 163 (187)
Q Consensus 121 ~~tv~f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~-s~kVtV 163 (187)
-...++.| --.|..|..-|.....++ |+.++.|... ++++.+
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~~ 142 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVYY 142 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEEE
Confidence 45678899 788999999888877765 8888888776 665544
No 27
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=28.35 E-value=64 Score=26.32 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=32.2
Q ss_pred hhHHHHHHHHhhccCCceEEEEecCCCE--------------EEEEec---CCHHHHHHHH
Q 029814 133 QGCAGKLKKHLSKMEGVTSFSIDLETKR--------------VTVMGH---ISPTGVLESI 176 (187)
Q Consensus 133 ~sCa~kIekaL~~l~GV~sV~Vdl~s~k--------------VtV~g~---v~~eeIveaI 176 (187)
++|-+-+|..+.+++||.++.+-+.++. |.|..+ ++.++|++..
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f 68 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYL 68 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHH
Confidence 6788888999999999999999776543 334432 5777776654
No 28
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=27.06 E-value=81 Score=26.07 Aligned_cols=20 Identities=10% Similarity=0.307 Sum_probs=16.3
Q ss_pred HHHHHHhhccCCceEEEEec
Q 029814 137 GKLKKHLSKMEGVTSFSIDL 156 (187)
Q Consensus 137 ~kIekaL~~l~GV~sV~Vdl 156 (187)
..|+.+|..++||.+++|++
T Consensus 134 ~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 134 EDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred HHHHHHHHhCCCceeEEEEE
Confidence 45788899999999888774
No 29
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=23.98 E-value=89 Score=22.58 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=22.9
Q ss_pred eEEEEEe-cccchhHH---HHHHHHhhccCCceEEEEecC
Q 029814 122 QVVVMRV-SLHCQGCA---GKLKKHLSKMEGVTSFSIDLE 157 (187)
Q Consensus 122 ~tv~f~V-GM~C~sCa---~kIekaL~~l~GV~sV~Vdl~ 157 (187)
-.+.+.+ .-.|.... ..++.+|..++|+.++++++.
T Consensus 39 v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~ 78 (99)
T TIGR02945 39 VDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELV 78 (99)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 3445555 33444332 456778888899998888864
No 30
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.52 E-value=2.4e+02 Score=18.75 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=32.3
Q ss_pred EEe-cccchhHHHHHHHHhhccCCceEEEEecCCCEEEEEe--cCCHHHHHHHHHhCCC
Q 029814 126 MRV-SLHCQGCAGKLKKHLSKMEGVTSFSIDLETKRVTVMG--HISPTGVLESISKVKR 181 (187)
Q Consensus 126 f~V-GM~C~sCa~kIekaL~~l~GV~sV~Vdl~s~kVtV~g--~v~~eeIveaIekaGk 181 (187)
+-+ |+.|+.=.-++.++| ++.. .+.+.|.. ......|....++.|+
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~~~G~ 50 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAESRGY 50 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHHHcCC
Confidence 456 899999999999999 5532 22344432 3455778888888887
No 31
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=21.98 E-value=3e+02 Score=19.55 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=28.1
Q ss_pred HHHHHHHhhccCCceEEEEecCCCEEEEE-ecCCHHHHHHHHHh
Q 029814 136 AGKLKKHLSKMEGVTSFSIDLETKRVTVM-GHISPTGVLESISK 178 (187)
Q Consensus 136 a~kIekaL~~l~GV~sV~Vdl~s~kVtV~-g~v~~eeIveaIek 178 (187)
...+...|..++|+.-...+-. +++.|+ ...+...+.+.+..
T Consensus 17 ~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~~ 59 (79)
T PF03927_consen 17 LEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLIDA 59 (79)
T ss_dssp HHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHHH
Confidence 5678899999999976566655 777766 33455555554443
No 32
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=20.21 E-value=2.9e+02 Score=24.77 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.4
Q ss_pred hhHHHHHHHHhhccCCceEEEEecCCCE
Q 029814 133 QGCAGKLKKHLSKMEGVTSFSIDLETKR 160 (187)
Q Consensus 133 ~sCa~kIekaL~~l~GV~sV~Vdl~s~k 160 (187)
++|-+-++..+.+++||.++.+-+.++.
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~ 161 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGD 161 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCC
Confidence 6788888899999999999999876553
Done!