Query 029817
Match_columns 187
No_of_seqs 240 out of 1294
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:05:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.4E-26 4.9E-31 161.2 6.9 61 34-94 2-63 (63)
2 1u3e_M HNH homing endonuclease 92.7 0.00032 1.1E-08 55.8 -10.6 64 9-76 84-147 (174)
3 3igm_B PF14_0633 protein; AP2 87.2 0.42 1.4E-05 34.1 2.9 24 30-53 3-27 (77)
4 3jtz_A Integrase; four strande 83.2 3 0.0001 29.6 5.9 44 38-81 28-75 (88)
5 1z1b_A Integrase; protein-DNA 75.8 4.2 0.00014 33.3 5.4 42 36-81 14-55 (356)
6 3ju0_A Phage integrase; four s 73.7 6.8 0.00023 28.8 5.6 44 38-81 28-75 (108)
7 1x60_A Sporulation-specific N- 35.5 26 0.00088 23.2 2.7 24 56-79 45-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 32.8 43 0.0015 22.4 3.5 33 47-79 36-68 (81)
9 1b69_A Protein (integrase); in 30.5 85 0.0029 21.5 4.6 23 31-53 8-30 (69)
10 2ftc_I Mitochondrial ribosomal 26.2 1.1E+02 0.0039 22.6 5.1 35 46-82 80-114 (118)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.93 E-value=1.4e-26 Score=161.19 Aligned_cols=61 Identities=52% Similarity=0.992 Sum_probs=57.7
Q ss_pred CeeeeeeCCCCcEEEEEeeCCC-CeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 029817 34 PFRGVRKRRWGSYVSEIRLPGE-KTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94 (187)
Q Consensus 34 ~yRGVr~r~~GkWvAeIr~p~~-~kri~LGtf~T~EeAA~AYD~Aa~~l~G~~A~lNFp~s~ 94 (187)
+||||++|++|||+|+|++|.+ ++++|||||+|+||||+|||.|+++++|..++||||++.
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 6999999999999999999875 699999999999999999999999999999999999873
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=92.69 E-value=0.00032 Score=55.78 Aligned_cols=64 Identities=6% Similarity=-0.080 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeeeeeCCCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHH
Q 029817 9 EPSQLQPGSSTSKPGSKKRTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDS 76 (187)
Q Consensus 9 ~~~~l~~~s~~~~~~n~k~~~~~~s~yRGVr~r~~GkWvAeIr~p~~~kri~LGtf~T~EeAA~AYD~ 76 (187)
.+.||+-.|..++..++....++ ..++||.....++|.+.|.. . +.++||.|+|.+|||++|..
T Consensus 84 ~~~NL~~~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 84 LSTNLRWVTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp CGGGEEEECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred CHHHcEECCHHHHhhcccccCcc-cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence 34567777777666554443322 22577755224678888885 3 56779999999999999653
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=87.25 E-value=0.42 Score=34.05 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=20.1
Q ss_pred CCCCCeeeeeeCC-CCcEEEEEeeC
Q 029817 30 QNDTPFRGVRKRR-WGSYVSEIRLP 53 (187)
Q Consensus 30 ~~~s~yRGVr~r~-~GkWvAeIr~p 53 (187)
+..|+|.||++.+ .+.|+|.-.+.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCcEEeecCCceEEEEEecC
Confidence 5689999999886 58999999974
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=83.18 E-value=3 Score=29.59 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=31.5
Q ss_pred eeeCCCC--cEEEEEeeCCCCeEEeecCCC--CHHHHHHHHHHHHHHh
Q 029817 38 VRKRRWG--SYVSEIRLPGEKTRIWLGSFG--SAEKAARAYDSAAFYL 81 (187)
Q Consensus 38 Vr~r~~G--kWvAeIr~p~~~kri~LGtf~--T~EeAA~AYD~Aa~~l 81 (187)
|+..+.| .|+-+.+..++.+++-||.|+ |.++|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 599998876666889999998 6788877766666554
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=75.84 E-value=4.2 Score=33.34 Aligned_cols=42 Identities=19% Similarity=0.074 Sum_probs=30.5
Q ss_pred eeeeeCCCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHh
Q 029817 36 RGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYL 81 (187)
Q Consensus 36 RGVr~r~~GkWvAeIr~p~~~kri~LGtf~T~EeAA~AYD~Aa~~l 81 (187)
.||++++.|.|..+.+ .+++++.+|. |..+|......+...+
T Consensus 14 ~~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 4677777789976654 5778899996 8888877766655444
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=73.68 E-value=6.8 Score=28.80 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=30.7
Q ss_pred eeeCCCC--cEEEEEeeCCCCeEEeecCCC--CHHHHHHHHHHHHHHh
Q 029817 38 VRKRRWG--SYVSEIRLPGEKTRIWLGSFG--SAEKAARAYDSAAFYL 81 (187)
Q Consensus 38 Vr~r~~G--kWvAeIr~p~~~kri~LGtf~--T~EeAA~AYD~Aa~~l 81 (187)
|+-.+.| .|+-+.+..++.+++-||.|+ |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 499998876666889999998 5777776666655554
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=35.46 E-value=26 Score=23.18 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=19.2
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHH
Q 029817 56 KTRIWLGSFGSAEKAARAYDSAAF 79 (187)
Q Consensus 56 ~kri~LGtf~T~EeAA~AYD~Aa~ 79 (187)
--|+++|.|.+.++|..+-+....
T Consensus 45 ~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 45 LYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHHH
Confidence 368999999999999888665443
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=32.77 E-value=43 Score=22.37 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=23.3
Q ss_pred EEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHH
Q 029817 47 VSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAF 79 (187)
Q Consensus 47 vAeIr~p~~~kri~LGtf~T~EeAA~AYD~Aa~ 79 (187)
.+.|.....--|+.+|-|.+.++|..+-+....
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 445543334478999999999999888665544
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=30.49 E-value=85 Score=21.52 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=18.9
Q ss_pred CCCCeeeeeeCCCCcEEEEEeeC
Q 029817 31 NDTPFRGVRKRRWGSYVSEIRLP 53 (187)
Q Consensus 31 ~~s~yRGVr~r~~GkWvAeIr~p 53 (187)
+..-+.|+++|+.|+|+..+...
T Consensus 8 gr~L~~GesqR~dG~Y~yry~d~ 30 (69)
T 1b69_A 8 GRILKTGESQRKDGRYLYKYIDS 30 (69)
T ss_dssp SSCCCTTEEECSSSCEEEEEECT
T ss_pred CCccCCCeEEccCCcEEEEEEcC
Confidence 34567899999899999999874
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=26.25 E-value=1.1e+02 Score=22.62 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=28.7
Q ss_pred EEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhc
Q 029817 46 YVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLK 82 (187)
Q Consensus 46 WvAeIr~p~~~kri~LGtf~T~EeAA~AYD~Aa~~l~ 82 (187)
|+|.|.. ++.-+-++...+++.|..|...|+.+|=
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 9999993 6666667777889999999999998774
Done!