BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029818
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7M734|OTOP1_RAT Otopetrin-1 OS=Rattus norvegicus GN=Otop1 PE=2 SV=1
Length = 600
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 114 YMDGEPQDSMIKPVTKILFGLTVITLLITLLFKDRPEWINKLNVPGWNFPPWVI 167
++ G + +++ +T LF L I+L I F RPE+ N L + F PW+I
Sbjct: 521 FLQGGMKRRLLRNITAFLF-LCNISLWIPPAFGCRPEYDNGLEEIVFGFEPWII 573
>sp|Q80VM9|OTOP1_MOUSE Otopetrin-1 OS=Mus musculus GN=Otop1 PE=1 SV=2
Length = 600
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 114 YMDGEPQDSMIKPVTKILFGLTVITLLITLLFKDRPEWINKLNVPGWNFPPWVI 167
++ G + +++ +T LF L I+L I F RPE+ N L + F PW+I
Sbjct: 521 FLQGGMKRRLLRNITAFLF-LCNISLWIPPAFGCRPEYDNGLEEIVFGFEPWII 573
>sp|A2QFK0|MED14_ASPNC Mediator of RNA polymerase II transcription subunit 14
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=rgr1 PE=3 SV=2
Length = 1114
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 2 EMEREKLINEEIEEERKPITNGSPTNQTPETVKTKVPEVEIHLYRRGEGPIAVFKSSLV- 60
EM ++ + I P T SP NQ+P ++ K+ +E +R E F LV
Sbjct: 111 EMAEMQVNSHGIHPSTAPTTGKSPGNQSPGNIRKKLRILEFSHAKRAE-----FIKLLVL 165
Query: 61 -GWDQDQLDVREILDKYGF 78
W + DV +++D F
Sbjct: 166 SQWSRQAADVSKLIDIQNF 184
>sp|Q7RTM1|OTOP1_HUMAN Otopetrin-1 OS=Homo sapiens GN=OTOP1 PE=2 SV=1
Length = 612
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 114 YMDGEPQDSMIKPVTKILFGLTVITLLITLLFKDRPEWINKLNVPGWNFPPWVI 167
++ G + +++ + LF L I+L I F RPE+ N L + F PW+I
Sbjct: 533 FLQGNAKRKVLRNIAAFLF-LCNISLWIPPAFGCRPEYDNGLEEIVFGFEPWII 585
>sp|Q53EL9|SEZ6_HUMAN Seizure protein 6 homolog OS=Homo sapiens GN=SEZ6 PE=2 SV=2
Length = 994
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 40 VEIHLYRRGEGPIAVFKSSLVGWDQDQLDVREILDKYGFKSVYAFSTGVGRGVPIRFNRR 99
++I + R G G + F +D D L R + G +S + T + V I+F
Sbjct: 633 LDIRVLRIGPGDVLTF------YDGDDLTARVLGQYSGPRSHFKLFTSMA-DVTIQFQSD 685
Query: 100 NGRSMLGYKDGSVVYMDGEPQDSMIKPVTKI 130
G S+LGY+ G V++ P++ + +I
Sbjct: 686 PGTSVLGYQQGFVIHFFEVPRNDTCPELPEI 716
>sp|O02485|YDJ1_CAEEL Uncharacterized protein ZK1073.1 OS=Caenorhabditis elegans
GN=ZK1073.1 PE=3 SV=1
Length = 325
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 68 DVREILDKYGFKSVYAFSTGVGRGVPIRFNRRNGRSMLG 106
D+ +LDK+ KS AF GVG + RF + ++G
Sbjct: 95 DLSAVLDKFEVKSAIAFGEGVGANIICRFAMGHPNRIMG 133
>sp|Q0IAJ3|Y1321_SYNS3 UPF0182 protein sync_1321 OS=Synechococcus sp. (strain CC9311)
GN=sync_1321 PE=3 SV=1
Length = 934
Score = 30.8 bits (68), Expect = 5.6, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 33 VKTKVPEVEIHLYRRGEGPIAVFKSSLVGWDQDQLDVRE--ILDKYGFKSVYAFSTGVGR 90
VK +V + L +G+ P V G DQ D + I+D + + Y +++ +
Sbjct: 609 VKKRVKALAPFLQLKGD-PYLVSVPMESGLDQYHDDQHQYWIVDGFTSSNTYPYASTLPD 667
Query: 91 GVPIRFNRRNGRSMLGYKDGSVVYMDGEPQDSMIKPVTKIL 131
G +R+ R + ++++ +G+V EP D MI+ K+
Sbjct: 668 GKEMRYLRNSVKAIVDAYNGTVHLYVSEPDDPMIRGWQKVF 708
>sp|A8M3D7|Y4110_SALAI UPF0182 protein Sare_4110 OS=Salinispora arenicola (strain CNS-205)
GN=Sare_4110 PE=3 SV=1
Length = 993
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 90 RGVPIRFNRRNGRSMLGYKDGSVVYMDGEPQDSMIKPVTKILFGLTVITLLITLLFKDRP 149
+ V +RR +L Y DG+ VY G + + P +IL ++V+ + L+F +
Sbjct: 222 KAVAYVLDRRT--MLLEYNDGANVYGAGYADINALLPAKEILAYISVVVAIAVLVFSN-- 277
Query: 150 EWINKLNVPGWNFPPWVIACVVI 172
W+ L PG + ++ V I
Sbjct: 278 AWMRNLVWPGISLALLGVSAVAI 300
>sp|A4XB61|Y3729_SALTO UPF0182 protein Strop_3729 OS=Salinispora tropica (strain ATCC
BAA-916 / DSM 44818 / CNB-440) GN=Strop_3729 PE=3 SV=1
Length = 994
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 90 RGVPIRFNRRNGRSMLGYKDGSVVYMDGEPQDSMIKPVTKILFGLTVITLLITLLFKDRP 149
+ V +RR +L Y DG+ VY G + + P +IL ++V+ + L+F +
Sbjct: 222 KAVAYVLDRRT--MLLEYNDGANVYGAGYADINALLPAKEILAYISVVVAIAVLVFSN-- 277
Query: 150 EWINKLNVPGWNFPPWVIACVVI 172
W+ L PG + ++ V I
Sbjct: 278 AWMRNLVWPGISLALLGVSAVAI 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,932,769
Number of Sequences: 539616
Number of extensions: 3267377
Number of successful extensions: 8895
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8878
Number of HSP's gapped (non-prelim): 31
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)