Citrus Sinensis ID: 029820

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSSSSSSDEENDEVPVS
Secondary Structure (PSIPRED)
cccccccEEEEEEccccccccccccccccccccEEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccEEEEEEEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEccEEEEEccccEEEcccccccEEEcccEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccHHHHHHHcccccEEEEEEEEEEcccccccccccccccHccHHHccccccc
Coil and Loop (DISEMBL)
MRRVQHVLKTVSAVdsgvevsitepedlitvkdAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLarsappipgfrrekggkttkvPRDFLIQILGEERVTKFVVQEIVRSTLTdytkkeglnvkdkkvTTTQKAEELrksfypgnefgFSAVLELEkseveesetetssssssdeendevpvs
Flexible Loop (DISEMBL)
mrrvqhvlktvsavdsgvevsitepedlitvkdakivvesqdedkiqvrvdltgdatqRVFDKVLtnlarsappipgfrrekggkttkvPRDFLIqilgeervtkfvVQEIVRstltdytkkeglnvkdkkvtttqkaeelrksfypgnefGFSAVLELEKSEVeesetetssssssdeendevpvs
Low Complexity Region (SEG)
MRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFsavlelekseveesetetssssssdeendevpvs
Disordered region (IsUnstruct)
*********TVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLAR****************TKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLN******************FYPGNEFGFSAV*******************************
Disordered Region (DISOPRED)
***********************************IVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSSSSSSDEENDEVPV*
Disordered Region (DISEMBL)
MRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE***************************
Disordered Region (DISPRO)
**RVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSSSSSSDEENDEVPVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
B7JW76	455	Trigger factor OS=Cyanoth	yes	no	0.620	0.254	0.309	2e-08
B0JL93	464	Trigger factor OS=Microcy	yes	no	0.620	0.25	0.293	9e-08
Q118P4	485	Trigger factor OS=Trichod	yes	no	0.577	0.222	0.284	2e-07
Q3M725	471	Trigger factor OS=Anabaen	yes	no	0.625	0.248	0.259	1e-06
Q8YQX9	471	Trigger factor OS=Nostoc	yes	no	0.625	0.248	0.259	1e-06
B2IT89	480	Trigger factor OS=Nostoc	yes	no	0.631	0.245	0.269	3e-06
Q8DLI3	473	Trigger factor OS=Thermos	yes	no	0.625	0.247	0.248	3e-06
Q5N1P5	474	Trigger factor OS=Synecho	yes	no	0.625	0.246	0.259	3e-06
Q935Z3	474	Trigger factor OS=Synecho	yes	no	0.625	0.246	0.259	4e-06
Q3B0U0	447	Trigger factor OS=Synecho	yes	no	0.598	0.250	0.283	1e-05

>sp|B7JW76|TIG_CYAP8 Trigger factor OS=Cyanothece sp. (strain PCC 8801) GN=tig PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 73/126 (57%), Gaps = 10/126 (7%)

Query: 35  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 94
           K+  E   + +I + ++++ +A+++ ++  +  LAR+A  IPGFR  KG    KVPR  L
Sbjct: 2   KVTQEKLPDSQIGLEIEISAEASKKAYETKVNTLARTAN-IPGFR--KG----KVPRQIL 54

Query: 95  IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 153
           +Q +G E +    +QE++  +L    K+E L ++ D ++ +  K +EL + F PG    F
Sbjct: 55  LQRIGTEYIKATTLQELIEDSLKAAIKQESLESIGDFELKS--KFDELVQQFKPGEPLTF 112

Query: 154 SAVLEL 159
           SA +++
Sbjct: 113 SAAIDV 118

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.
Cyanothece sp. (strain PCC 8801) (taxid: 41431)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|B0JL93|TIG_MICAN Trigger factor OS=Microcystis aeruginosa (strain NIES-843) GN=tig PE=3 SV=1

 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 10/126 (7%)

Query: 35  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 94
           K++ E     +I + +++  + T+   ++V+ NLA+S   IPGFR        KVPR  L
Sbjct: 2   KVIQEKLPASQIGLEIEIPAETTKNTHEQVVKNLAKSVN-IPGFR------PGKVPRQIL 54

Query: 95  IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 153
           +Q LG + V   V++E++ + L    K+EG+ ++ + ++ +  K E+L  ++ PG    F
Sbjct: 55  LQRLGTKAVKAAVIEELIENCLESALKQEGIESLGNPQLLS--KFEDLIAAYEPGKALTF 112

Query: 154 SAVLEL 159
           S  L++
Sbjct: 113 SVSLDV 118

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q118P4|TIG_TRIEI Trigger factor OS=Trichodesmium erythraeum (strain IMS101) GN=tig PE=3 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 64/116 (55%), Gaps = 8/116 (6%)

Query: 45  KIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVT 104
           +I + ++++ + ++  +++++    RSA  IPGFR+       KVPR+ LIQ LG+  + 
Sbjct: 12  QISLEIEISPEMSKNAYEQIIKKYIRSAN-IPGFRK------GKVPRNILIQRLGKNYIK 64

Query: 105 KFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE 160
              + +++ + L    ++E +    +    T+  EEL K F PG E  FSA +++E
Sbjct: 65  AMALDDLINNCLEKAREQESIKAIGQFELKTE-FEELVKDFEPGKEMAFSAKVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3M725|TIG_ANAVT Trigger factor OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tig PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 71/127 (55%), Gaps = 10/127 (7%)

Query: 35  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 94
           K+  E     +I + +++T + TQ+ +++V+ NL+R+   IPGFR+       KVPR  L
Sbjct: 2   KVTQEKLPASQIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRK------GKVPRQVL 54

Query: 95  IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 153
           +Q LG+  +    ++E+++  +    K+E +  +   ++ ++   ++L  S+ PG    F
Sbjct: 55  LQRLGKTHIKAAALEELLQDGIEQAIKQESIAAIGQPRLRSS--FDDLINSYEPGQPLTF 112

Query: 154 SAVLELE 160
           +A +++E
Sbjct: 113 TAAVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8YQX9|TIG_NOSS1 Trigger factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tig PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 71/127 (55%), Gaps = 10/127 (7%)

Query: 35  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 94
           K+  E     +I + +++T + TQ+ +++V+ NL+R+   IPGFR+       KVPR  L
Sbjct: 2   KVTQEKLPASQIGLEIEITPEITQKTYEQVIKNLSRTV-NIPGFRK------GKVPRQVL 54

Query: 95  IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 153
           +Q LG+  +    ++E+++  +    K+E +  +   ++ ++   ++L  S+ PG    F
Sbjct: 55  LQRLGKTHIKAAALEELLQDGIEQAIKQESIAAIGQPRLRSS--FDDLINSYEPGQPLTF 112

Query: 154 SAVLELE 160
           +A +++E
Sbjct: 113 TAAVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|B2IT89|TIG_NOSP7 Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tig PE=3 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 8/126 (6%)

Query: 35  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 94
           K+  E     +I + +++T + T++ +++V+ NLA +A  IPGFRR       KVPR  L
Sbjct: 2   KVTQEKLPASQIGLEIEITPEITKQTYEQVIKNLASTAN-IPGFRR------GKVPRPIL 54

Query: 95  IQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFS 154
           +Q LG  R+    ++E+++  +    K+E +    +    +   E+L  ++ PG      
Sbjct: 55  LQRLGTTRIKAAALEELIQDGIEQAVKQEAIPAIGQPQLRS-SFEDLINNYEPGKPLTIL 113

Query: 155 AVLELE 160
           A +++E
Sbjct: 114 AAVDVE 119

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8DLI3|TIG_THEEB Trigger factor OS=Thermosynechococcus elongatus (strain BP-1) GN=tig PE=3 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 36  IVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLI 95
           +  E +   ++   ++++G  +Q+V+++V+ +L R    +PGFR  KG    K PR  ++
Sbjct: 1   MTTEPRSNSQLLATIEVSGTHSQQVYNQVVNDLLRHTQ-VPGFR--KG----KAPRQLVL 53

Query: 96  QILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSA 155
           Q LG ER+    +++++   +    +K  +      +       EL   F+PG  F FS 
Sbjct: 54  QQLGRERLRYLAMEKLIEDAVKTAVEKNNIPYLG-NLELAGGITELLDQFHPGENFSFSV 112

Query: 156 VLELE 160
             ++E
Sbjct: 113 TFDVE 117

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5N1P5|TIG_SYNP6 Trigger factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tig PE=3 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 70/127 (55%), Gaps = 10/127 (7%)

Query: 35  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 94
           K+  E     ++ ++++++G+ +++V+++ LT L+R     PGFR        KVPR  L
Sbjct: 4   KVTQEKLPASRVGLQIEVSGEQSRQVYERTLTRLSREVR-FPGFR------PGKVPRPVL 56

Query: 95  IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 153
           IQ LGE  +    ++++V+ +L     +E +  + + ++++    E L  +F PG  F F
Sbjct: 57  IQRLGETALKANAIEDLVQQSLESAIAQESIPAIGNYQLSS--DFETLVAAFQPGKSFSF 114

Query: 154 SAVLELE 160
            A ++++
Sbjct: 115 EASVDVQ 121

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q935Z3|TIG_SYNE7 Trigger factor OS=Synechococcus elongatus (strain PCC 7942) GN=tig PE=3 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 70/127 (55%), Gaps = 10/127 (7%)

Query: 35  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 94
           K+  E     ++ ++++++G+ +++V+++ LT L+R     PGFR        KVPR  L
Sbjct: 4   KVTQEKLPASRVGLQIEVSGEQSRQVYERTLTRLSREVR-FPGFR------PGKVPRPVL 56

Query: 95  IQILGEERVTKFVVQEIVRSTLTDYTKKEGL-NVKDKKVTTTQKAEELRKSFYPGNEFGF 153
           IQ LGE  +    ++++V+ +L     +E +  + + ++++    E L  +F PG  F F
Sbjct: 57  IQRLGETALKANAIEDLVQQSLESAIAQESIPAIGNYQLSS--DFETLVAAFQPGESFSF 114

Query: 154 SAVLELE 160
            A ++++
Sbjct: 115 EASVDVQ 121

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3B0U0|TIG_SYNS9 Trigger factor OS=Synechococcus sp. (strain CC9902) GN=tig PE=3 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 8/120 (6%)

Query: 35  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 94
           K+  ES+   ++ V V + G+     +++ + +L+RS   +PGFR+       KVPR  L
Sbjct: 7   KVSTESRPSSRLAVTVTVPGERCTASYEEAIKSLSRSIN-LPGFRK------GKVPRSVL 59

Query: 95  IQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFS 154
           +Q LG  R+    +++++ S   D  K+E L    +    +   + L +SF PG+E  F+
Sbjct: 60  VQQLGGVRIKATALEKLIDSAWRDAIKQESLEPISQP-DLSSGFDGLLESFNPGDELTFT 118

Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

Synechococcus sp. (strain CC9902) (taxid: 316279)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
255579456	216	conserved hypothetical protein [Ricinus	0.893	0.773	0.658	6e-58
225434092	232	PREDICTED: uncharacterized protein LOC10	0.807	0.650	0.690	4e-54
296084278	440	unnamed protein product [Vitis vinifera]	0.807	0.343	0.677	5e-53
449445840	247	PREDICTED: uncharacterized protein LOC10	0.850	0.643	0.625	9e-53
388492748	233	unknown [Lotus japonicus]	0.855	0.686	0.608	9e-53
388513321	221	unknown [Medicago truncatula]	0.871	0.737	0.548	3e-48
115441583	229	Os01g0894700 [Oryza sativa Japonica Grou	0.796	0.650	0.525	2e-37
222619669	398	hypothetical protein OsJ_04389 [Oryza sa	0.796	0.374	0.525	3e-37
224122010	123	predicted protein [Populus trichocarpa]	0.556	0.845	0.723	3e-37
357126302	249	PREDICTED: uncharacterized protein LOC10	0.967	0.726	0.448	1e-35

>gi|255579456|ref|XP_002530571.1| conserved hypothetical protein [Ricinus communis] gi|223529870|gb|EEF31801.1| conserved hypothetical protein [Ricinus communis]

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 114/173 (65%), Positives = 141/173 (81%), Gaps = 6/173 (3%)

Query: 2   RRVQHVLKTVSAVDSGVEVSITEPED-LITVKDAKIVVESQDEDKIQVRVDLTGDATQRV 60
           R ++HV K +SAV SG+E + T+P+D  IT+K+AK+VVES  E+KIQ+RVDL+GD T+ V
Sbjct: 49  RVLEHVFKPISAVGSGLETTFTDPKDNAITLKNAKVVVESMQENKIQLRVDLSGDETEIV 108

Query: 61  FDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYT 120
           F KVL NLAR+APPIPGFRREKGG    VPRDFL+QILGEERVTKFV+QEIV S++ DY 
Sbjct: 109 FSKVLANLARTAPPIPGFRREKGGDFRLVPRDFLLQILGEERVTKFVIQEIVSSSVADYV 168

Query: 121 KKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSS 173
           KKE LNVK+ KV T Q+A+EL+K F PGN+FGF+AVLEL     EE++TETSS
Sbjct: 169 KKENLNVKENKVNTVQEADELKKLFIPGNDFGFNAVLEL-----EETKTETSS 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434092|ref|XP_002275949.1| PREDICTED: uncharacterized protein LOC100247585 [Vitis vinifera]

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 105/152 (69%), Positives = 128/152 (84%), Gaps = 1/152 (0%)

Query: 9   KTVSAVDSGVEVSITEPEDL-ITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTN 67
           K +SAV SG + SI +P+D  IT+K+AKIVVESQ++D+IQ+RVD+ G  TQRVFD VLTN
Sbjct: 65  KPISAVGSGSKASIIDPKDNDITIKNAKIVVESQEDDEIQLRVDVAGVDTQRVFDHVLTN 124

Query: 68  LARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNV 127
           LARSAPPIPGFRR+KGGKT+ VP+ FL+QILGEERVTKFV+QEI+ +T++DY  KE LNV
Sbjct: 125 LARSAPPIPGFRRQKGGKTSNVPKSFLLQILGEERVTKFVIQEIITATVSDYVMKENLNV 184

Query: 128 KDKKVTTTQKAEELRKSFYPGNEFGFSAVLEL 159
           KDKK+TTT  AEEL+  F PGNEF F+A LEL
Sbjct: 185 KDKKITTTPAAEELKSLFTPGNEFRFNATLEL 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084278|emb|CBI24666.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 126/152 (82%), Gaps = 1/152 (0%)

Query: 9   KTVSAVDSGVEVSITEPEDL-ITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTN 67
           K +SAV SG + SI +P+D  IT+K+AKIVVESQ++D+IQ+RVD+ G  TQRVFD VLTN
Sbjct: 273 KPISAVGSGSKASIIDPKDNDITIKNAKIVVESQEDDEIQLRVDVAGVDTQRVFDHVLTN 332

Query: 68  LARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNV 127
           LARSAPPIPGFRR+KGG +  VP+ FL+QILGEERVTKFV+QEI+ +T++DY  KE LNV
Sbjct: 333 LARSAPPIPGFRRQKGGNSLYVPKSFLLQILGEERVTKFVIQEIITATVSDYVMKENLNV 392

Query: 128 KDKKVTTTQKAEELRKSFYPGNEFGFSAVLEL 159
           KDKK+TTT  AEEL+  F PGNEF F+A LEL
Sbjct: 393 KDKKITTTPAAEELKSLFTPGNEFRFNATLEL 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445840|ref|XP_004140680.1| PREDICTED: uncharacterized protein LOC101212225 [Cucumis sativus]

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 100/160 (62%), Positives = 135/160 (84%), Gaps = 1/160 (0%)

Query: 9   KTVSAVDSGVEVSITEPE-DLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTN 67
           K  S   SG+E +IT+ + + IT+K+AK+VVES++E+KIQ+RVDLTGD TQ+VFD+VLTN
Sbjct: 88  KPTSIASSGLEAAITDYKGNPITLKNAKVVVESEEENKIQLRVDLTGDETQKVFDQVLTN 147

Query: 68  LARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNV 127
           LARSAPP+PGFR++KGGKT+ VP+ FL+++LG++RVTKF++QEI+ ST+ DY KKE +NV
Sbjct: 148 LARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFIIQEILNSTMVDYAKKENINV 207

Query: 128 KDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEES 167
           KDKKV+TTQ A+EL+  F PG EFGF+A+LELE +   ES
Sbjct: 208 KDKKVSTTQTADELKVLFNPGKEFGFNAILELESASDAES 247

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492748|gb|AFK34440.1| unknown [Lotus japonicus]

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 133/161 (82%), Gaps = 1/161 (0%)

Query: 4   VQHVLKTVSAVDSGVEVSITEP-EDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFD 62
           ++H+   +SAV+SG+E SIT+  E+   + +A+IV+ES+DE KIQ+RVDLTGD T+RVFD
Sbjct: 70  LRHLNTPISAVNSGLEASITDSDENSAILTNAQIVLESEDESKIQLRVDLTGDQTERVFD 129

Query: 63  KVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK 122
           + L +L R+APP+PGFR +KGGK++K+P+ FL+QILGEERVTKFV+QEI+ ST+ +Y KK
Sbjct: 130 RTLISLGRTAPPVPGFRMQKGGKSSKIPKSFLVQILGEERVTKFVIQEILNSTMANYAKK 189

Query: 123 EGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSE 163
           E L+VK KKV+TTQ AEEL+KSF PG EFGF+ ++E E SE
Sbjct: 190 ENLDVKGKKVSTTQTAEELKKSFTPGKEFGFNVIIEPENSE 230

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513321|gb|AFK44722.1| unknown [Medicago truncatula]

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 127/164 (77%), Gaps = 1/164 (0%)

Query: 4   VQHVLKTVSAVDSGVEVSITEPEDLIT-VKDAKIVVESQDEDKIQVRVDLTGDATQRVFD 62
           ++H+   +SAV+SG+E SIT+  D+   + DA +V E  D+++IQ+RVDLTG  TQ+VFD
Sbjct: 56  LRHLNTPISAVNSGLEASITDSNDISAFLTDATVVAEPGDDNRIQLRVDLTGVQTQKVFD 115

Query: 63  KVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK 122
           ++  NL R+APP+PGFR +KGGK++K+P+DFL+Q+LGEERVTKF +QEI+  T+ DYTKK
Sbjct: 116 RIPINLGRTAPPVPGFRMQKGGKSSKIPKDFLLQMLGEERVTKFAIQEILNCTMADYTKK 175

Query: 123 EGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEE 166
           E L+ KDKKV+T Q  +EL+KSF  G EFGF+ ++E + SEV  
Sbjct: 176 ENLDAKDKKVSTIQTIQELKKSFTAGKEFGFNVLIEPKNSEVNN 219

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441583|ref|NP_001045071.1| Os01g0894700 [Oryza sativa Japonica Group] gi|57899810|dbj|BAD87555.1| unknown protein [Oryza sativa Japonica Group] gi|113534602|dbj|BAF06985.1| Os01g0894700 [Oryza sativa Japonica Group] gi|218189519|gb|EEC71946.1| hypothetical protein OsI_04765 [Oryza sativa Indica Group]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 5/154 (3%)

Query: 29  ITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTK 88
           +++++AK  V S+D++ I VRVDL G ATQ+VFD+ LT+LAR APP+PGFR+ KGG+T+ 
Sbjct: 78  LSLQNAKTSVVSRDDETINVRVDLPGKATQKVFDEALTSLARDAPPVPGFRKSKGGRTSN 137

Query: 89  VPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPG 148
           +P   L+Q+LG+ RVTKFV+QEI+  T+ D+ KKE L V + ++ TTQ  EEL  SF PG
Sbjct: 138 IPSSILLQMLGKSRVTKFVLQEILSITVGDFVKKENLKV-NPEIKTTQSEEELESSFTPG 196

Query: 149 NEFGFSAVLELEKSEVEESETETSSSSSSDEEND 182
           + F FS VL+LEK E +    ETS +S SDE ++
Sbjct: 197 SSFSFSVVLQLEKPESD----ETSENSESDEASE 226

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619669|gb|EEE55801.1| hypothetical protein OsJ_04389 [Oryza sativa Japonica Group]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 5/154 (3%)

Query: 29  ITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTK 88
           +++++AK  V S+D++ I VRVDL G ATQ+VFD+ LT+LAR APP+PGFR+ KGG+T+ 
Sbjct: 247 LSLQNAKTSVVSRDDETINVRVDLPGKATQKVFDEALTSLARDAPPVPGFRKSKGGRTSN 306

Query: 89  VPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPG 148
           +P   L+Q+LG+ RVTKFV+QEI+  T+ D+ KKE L V + ++ TTQ  EEL  SF PG
Sbjct: 307 IPSSILLQMLGKSRVTKFVLQEILSITVGDFVKKENLKV-NPEIKTTQSEEELESSFTPG 365

Query: 149 NEFGFSAVLELEKSEVEESETETSSSSSSDEEND 182
           + F FS VL+LEK E +    ETS +S SDE ++
Sbjct: 366 SSFSFSVVLQLEKPESD----ETSENSESDEASE 395

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122010|ref|XP_002330708.1| predicted protein [Populus trichocarpa] gi|222872312|gb|EEF09443.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 91/105 (86%), Gaps = 1/105 (0%)

Query: 19  EVSITEP-EDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPG 77
           + SI E  E LI +K+ KIV+ESQ+EDK+QVRVDL+GD TQ+VF+K LT+LARSAPPIPG
Sbjct: 12  QASIAETNEKLIALKNVKIVIESQEEDKMQVRVDLSGDETQKVFNKALTDLARSAPPIPG 71

Query: 78  FRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKK 122
           FRREKGGKTT VPR+FL+QILGE+RVT FV+QEIV ST+ DY KK
Sbjct: 72  FRREKGGKTTNVPREFLLQILGEDRVTNFVIQEIVTSTMADYVKK 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126302|ref|XP_003564827.1| PREDICTED: uncharacterized protein LOC100837766 isoform 1 [Brachypodium distachyon]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 121/185 (65%), Gaps = 4/185 (2%)

Query: 2   RRVQHVLKTVSAVDSGVEVSITEPEDL--ITVKDAKIVVESQDEDKIQVRVDLTGDATQR 59
           R ++H    VSAV SG   S+ + E+   +++ + K  V S+D++ I +R+DL G ATQ+
Sbjct: 53  RSLRHTFLPVSAVRSGRGSSVAQEEEKTGLSLDNFKTTVVSRDDENINLRIDLPGKATQK 112

Query: 60  VFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDY 119
           VFD+ LT+LAR APP+PGFRR KGGKT+ +P   L+ +LG+ RVTKF++QEI+  T+ D+
Sbjct: 113 VFDEALTSLARDAPPVPGFRRSKGGKTSNIPSSILLAMLGKSRVTKFILQEILSVTVGDF 172

Query: 120 TKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSSSSSSDE 179
            KKE L V + ++ TTQ   +L  SF PG+ F F+ +L+LEK E +  E        SDE
Sbjct: 173 VKKENLKV-NPEIATTQSEGDLESSFTPGSSFRFNVILQLEK-ESDSDEASEEVQVDSDE 230

Query: 180 ENDEV 184
            + EV
Sbjct: 231 ASGEV 235

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:505006279	199	AT2G30695 "AT2G30695" [Arabido	0.727	0.683	0.419	5.3e-24

TAIR|locus:505006279 AT2G30695 "AT2G30695" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 60/143 (41%), Positives = 88/143 (61%)

Query:    11 VSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLAR 70
             V A  S VE S  +   LIT    K+  E+ +E K+ V+V  +G+ TQ VF+ V   +  
Sbjct:    54 VCAAPSDVETSSKDESVLIT----KVETETSNEVKVHVQV--SGEKTQTVFNHVFEKMVA 107

Query:    71 SAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDK 130
             +A PIPGFRR KGGKT  +P+D L++ILG  +V K V+++++ S + DY K+E L V  K
Sbjct:   108 AAQPIPGFRRVKGGKTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDYVKQEDLKV-GK 166

Query:   131 KVTTTQKAEELRKSFYPGNEFGF 153
             ++T  Q  E+L ++F PG  F F
Sbjct:   167 ELTVVQSYEDLEETFEPGESFSF 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      187       153   0.00081  105 3  11 23  0.38    32
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  490 (52 KB)
  Total size of DFA:  104 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.03u 0.08s 17.11t   Elapsed:  00:00:02
  Total cpu time:  17.03u 0.08s 17.11t   Elapsed:  00:00:02
  Start:  Tue May 21 00:31:08 2013   End:  Tue May 21 00:31:10 2013

GO:0003674 "molecular_function" evidence=ND

GO:0006457 "protein folding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034654001	SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (218 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)			•						0.506
	GSVIVG00015795001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (78 aa)			•						0.506
	ndhM	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence;; NDH-1 shuttles elect [...] (208 aa)			•						0.506
	GSVIVG00003429001	SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (182 aa)			•						0.506
	GSVIVG00000490001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (84 aa)			•						0.506
	GSVIVG00020946001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (200 aa)			•						0.504
	GSVIVG00006469001	SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (155 aa)			•						0.503
	GSVIVG00002621001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (295 aa)			•						0.503
	GSVIVG00035621001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (96 aa)			•						0.502
	GSVIVG00023726001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (204 aa)			•						0.502

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
pfam05697	145	pfam05697, Trigger_N, Bacterial trigger factor pro	6e-05
COG0544	441	COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans	0.002
TIGR00115	408	TIGR00115, tig, trigger factor	0.002

>gnl|CDD|218700 pfam05697, Trigger_N, Bacterial trigger factor protein (TF)

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 15/143 (10%)

Query: 35  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 94
           K+ VE  +  ++++ V++  +  +   DK L  LA+    IPGFR  KG    KVPR  +
Sbjct: 2   KVTVEKLEGLEVKLTVEVPAEEVEEAVDKALKELAKKV-KIPGFR--KG----KVPRSVV 54

Query: 95  IQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDK---KVTTTQKAEELRKSF----YP 147
            +  G+E + +  ++++++    +  K+E L    +   +    +  ++   +     YP
Sbjct: 55  KKRYGKE-IYQEALEDLLQEAYEEALKEEKLEPIGQPEIEEVELEDGKDFEFTAEFEVYP 113

Query: 148 GNEFGFSAVLELEKSEVEESETE 170
             E G    LE+EK EVE ++ +
Sbjct: 114 EVELGDYKGLEVEKPEVEVTDED 136

In the E. coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains. This family represents the N-terminal region of the protein. Length = 145

>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 15/126 (11%)

Query: 35  KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFL 94
           K+ VE  +  ++++ V++  +  ++  DK L  LA+    IPGFR  KG    KVPR  +
Sbjct: 2   KVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKV-KIPGFR--KG----KVPRKVI 54

Query: 95  IQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFS 154
            Q  GE  V + V+ E++     +  K+EGL    +        E     F  G +F F+
Sbjct: 55  EQRYGEA-VRQDVLNELLPEAFEEAIKEEGLKPAGQP-------EIEITEFEKGEDFEFT 106

Query: 155 AVLELE 160
           A +E+ 
Sbjct: 107 AEVEVY 112

Length = 441

>gnl|CDD|232831 TIGR00115, tig, trigger factor

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 8/80 (10%)

Query: 48  VRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFV 107
           + V++  +  +   DK L  LA++   IPGFR  KG    KVPR  + +  G+E V +  
Sbjct: 3   LTVEVPAEEVEEEVDKALKELAKTVK-IPGFR--KG----KVPRSVVEKRYGKE-VRQEA 54

Query: 108 VQEIVRSTLTDYTKKEGLNV 127
           + E+++   ++  K+E +  
Sbjct: 55  LNELLQEAFSEAVKEEKIRP 74

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome [Protein fate, Protein folding and stabilization]. Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
PF05697	145	Trigger_N: Bacterial trigger factor protein (TF);	99.95
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	99.93
PRK01490	435	tig trigger factor; Provisional	99.92
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	99.86

>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state

Probab=99.95  E-value=5.8e-28  Score=190.60  Aligned_cols=124  Identities=24%  Similarity=0.498  Sum_probs=107.6

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029820           34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  113 (187)
Q Consensus        34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~  113 (187)
                      |+++++..+++.+.++|+|++++|+.+++++|++++++++ ||||||  |    |||+++|+++||.+ |++++++++++
T Consensus         1 M~v~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~~~k~~~-ipGFRk--G----K~P~~vi~~~~g~~-i~~~~~~~~~~   72 (145)
T PF05697_consen    1 MKVTVEKIEDSKVKLEVEVPAEEVEKAYEKALKELAKKVK-IPGFRK--G----KAPRNVIEKRYGKE-IREEAIEELLQ   72 (145)
T ss_dssp             -EEEEEEESTTEEEEEEEE-HHHHHHHHHHHHHHHHTTTT-BTTS-T--T----SS-HHHHHHHHCHH-HHHHHHHHHHH
T ss_pred             CccEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCCCC--C----CCCHHHHHHHHHHH-HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 999999  9    99999999999996 99999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEee------cCCccccccccc
Q 029820          114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETS  172 (187)
Q Consensus       114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~------~~e~~~~~~~~~  172 (187)
                      .+|.+|+++++++|++ +|.+.      ...+.++++|+|+++|++.      +++++..+.+..
T Consensus        73 ~~~~~~~~~~~~~~i~-~p~i~------~~~~~~~~~~~~~~~~~~~Pev~l~~~~~i~v~~~~~  130 (145)
T PF05697_consen   73 EAYEEAIKEEKIKPIG-DPEIE------EKDFKEGEDFEFEVEFEVFPEVELKDYKGIKVEKPEV  130 (145)
T ss_dssp             HHHHHHHHHTTS-ESS-EEEEE------EEEEETTS-EEEEEEEEE--ECEETTCTTSEEEEEEH
T ss_pred             HHHHHHHHHcCCCccc-ccccc------ccccccCCCEEEEEEEEecCCcccCCCCCceeeeccc
Confidence            9999999999999999 99986      3678999999999999987      455555544443

The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.6e-25  Score=204.14  Aligned_cols=129  Identities=29%  Similarity=0.485  Sum_probs=120.7

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029820           34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  113 (187)
Q Consensus        34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~  113 (187)
                      |++++++++++.+.|+|+||++.|++++++++++++++++ ||||||  |    |||+.+++++|| .+|++++++++|+
T Consensus         1 M~v~~e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v~-IpGFRk--G----KvP~~ii~~ryg-~~v~~d~~~~ll~   72 (441)
T COG0544           1 MKVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKVK-IPGFRK--G----KVPRKVIEQRYG-EAVRQDVLNELLP   72 (441)
T ss_pred             CCeeeeecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-CCCCCC--C----CCCHHHHHHHHh-HHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999 999999  9    999999999999 4899999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEee------cCCcccccccccCCCCC
Q 029820          114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETSSSSSS  177 (187)
Q Consensus       114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~------~~e~~~~~~~~~~~~~~  177 (187)
                      .+|.+|+++++++|++ +|.+.      ...++.|++|.|+++|+|+      ++..+++++.+.+.++.
T Consensus        73 ~~~~~a~~e~~~~~~~-~p~~~------~~~~e~~~~~~f~~~~ev~Pev~l~d~~~i~v~~~~~ev~d~  135 (441)
T COG0544          73 EAFEEAIKEEGLKPAG-QPEIE------ITEFEKGEDFEFTAEVEVYPEVELGDYKGIEVEKPVVEVTDE  135 (441)
T ss_pred             HHHHHHHHHhCcCcCC-CCCcc------cccccCCCceEEEEEEEEeeceecCccccceeecCCcccCHH
Confidence            9999999999999999 99776      4678999999999999997      67888888888888743

>PRK01490 tig trigger factor; Provisional

Probab=99.92  E-value=2.8e-24  Score=195.33  Aligned_cols=127  Identities=24%  Similarity=0.407  Sum_probs=114.0

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029820           34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  113 (187)
Q Consensus        34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~  113 (187)
                      |+++++.+++|++.|+|+||+++|+.++++++++++++++ ||||||  |    |||++||+++||.. |++++++.+|+
T Consensus         1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----kvP~~ii~k~~g~~-i~~e~~~~li~   72 (435)
T PRK01490          1 MQVTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVR-IPGFRK--G----KVPRKIVEQRYGES-VRQEALNDLLP   72 (435)
T ss_pred             CcceEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHHhhCc-CCCccC--C----CCCHHHHHHHHhHH-HHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    99999999999985 99999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEee------cCCcccccccccCCC
Q 029820          114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETSSSS  175 (187)
Q Consensus       114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~------~~e~~~~~~~~~~~~  175 (187)
                      .+|.+|+++++++|++ +|.+.      ...++++++|+|+++|+|.      +|.++........++
T Consensus        73 ~~~~~~i~~~~~~~~~-~p~i~------~~~~~~~~~~~~~~~~~v~Pev~l~~y~~i~v~~~~~~vt  133 (435)
T PRK01490         73 EAYEEAIKEEGIRPAG-QPEIE------PTEEEKGKDLEFTAEVEVYPEVELGDYKGLEVEKPVVEVT  133 (435)
T ss_pred             HHHHHHHHHcCCCcCC-CCccc------ccccCCCCcEEEEEEeeecCCcccCCCCceEEEeccCCCC
Confidence            9999999999999999 99997      2467888999999999997      344455544444333

>TIGR00115 tig trigger factor

Probab=99.86  E-value=2e-21  Score=175.11  Aligned_cols=114  Identities=25%  Similarity=0.421  Sum_probs=101.1

Q ss_pred             EEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 029820           46 IQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGL  125 (187)
Q Consensus        46 ~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~~~~~eAike~~l  125 (187)
                      +.|+|+||+++|+.++++++++++++++ ||||||  |    |||++||+++||. .|++++++.+|+.+|.+|++++++
T Consensus         1 ~~l~v~v~~~~~~~~~~k~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~~g~-~i~~e~~~~li~~~~~~~~~~~~~   72 (408)
T TIGR00115         1 RKLTVEVPAEEVEEEVDKALKELAKKVK-IPGFRK--G----KVPRSVVEKRYGK-EVRQEALNELLQEAFSEAVKEEKI   72 (408)
T ss_pred             CeEEEEECHHHHHHHHHHHHHHHHhhCC-CCCccC--C----CCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3689999999999999999999999999 999999  9    9999999999998 599999999999999999999999


Q ss_pred             ccCCCCceeehhhhhhhhccCCCCcEEEEEEEEee------cCCcccccccccCC
Q 029820          126 NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETSSS  174 (187)
Q Consensus       126 ~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~------~~e~~~~~~~~~~~  174 (187)
                      +|+| +|.+.      ...+.+|++|+|+++|++.      .+.+++.......+
T Consensus        73 ~~~~-~p~~~------~~~~~~~~~~~~~~~~~v~Pev~l~~y~~i~v~~~~~~v  120 (408)
T TIGR00115        73 RPIG-QPEIE------VKEIEDGKDLEFTAEFEVYPEVELGDYKGIEVEKPEVEV  120 (408)
T ss_pred             CcCC-CCccc------cccccCCCCEEEEEEEEecCceecCCCCceEEEeccCCC
Confidence            9999 99986      2467889999999999997      44555555444433

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
2d3o_1	112	Trigger factor, TF; ribosome, nascent chain, prote	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 59/208 (28%)

Query: 1   MRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVD-----LTGD 55
           +  VQ+  K  +A +   ++       L+T +  ++           + +D     LT D
Sbjct: 250 LLNVQNA-KAWNAFNLSCKI-------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 56  ATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRST 115
             + +  K L    +  P     R          P    + I+ E      +   +    
Sbjct: 302 EVKSLLLKYLDCRPQDLP-----REVLTTN----P--RRLSIIAE-----SIRDGLATW- 344

Query: 116 LTDYTKKEGLNVKDKKVTTTQKA-------EELRKSFYPGNEFG-F-------SAVLEL- 159
             D  K     V   K+TT  ++        E RK F        F       + +L L 
Sbjct: 345 --DNWKH----VNCDKLTTIIESSLNVLEPAEYRKMFD---RLSVFPPSAHIPTILLSLI 395

Query: 160 ----EKSEVEESETETSSSSSSDEENDE 183
                KS+V     +    S  +++  E
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 Length = 112

 Score = 42.2 bits (100), Expect = 8e-06
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 15/121 (12%)

Query: 38  VESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQI 97
           + S++ +K++ +V +      R +D+V   LAR    +PGFR   G    K PR  +   
Sbjct: 4   LISKEGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFR--PG----KAPRKVIENR 56

Query: 98  LGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVL 157
           +G+  V   V   ++ +  +   ++ GLN+ D  V               G  F F+   
Sbjct: 57  VGKGYVESQVRDRLLETHYSQGLRELGLNLVDATVDPQDVQS--------GQAFEFTVKG 108

Query: 158 E 158
           E
Sbjct: 109 E 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
1p9y_A	121	Trigger factor, TF; alpha-beta protein, isomerase;	99.97
2d3o_1	112	Trigger factor, TF; ribosome, nascent chain, prote	99.97
2nsc_A	109	Trigger factor, TF; chaperone; 2.20A {Thermotoga m	99.96
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.95
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.94
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	99.86

>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*

Probab=99.97  E-value=6.4e-31  Score=202.76  Aligned_cols=114  Identities=24%  Similarity=0.384  Sum_probs=108.5

Q ss_pred             CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 029820           33 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV  112 (187)
Q Consensus        33 ~M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li  112 (187)
                      .|+++++++++++++|+|+||+++++++++++|++++++++ ||||||  |    |||++||+++||. .|++++++++|
T Consensus         3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i   74 (121)
T 1p9y_A            3 HMQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRK--G----KVPMNIVAQRYGA-SVRQDVLGDLM   74 (121)
T ss_dssp             -CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CSCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-cCCcCC--C----CCCHHHHHHHHHH-HHHHHHHHHHH
Confidence            49999999999999999999999999999999999999999 999999  9    9999999999997 69999999999


Q ss_pred             HHHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEeec
Q 029820          113 RSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  161 (187)
Q Consensus       113 ~~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~~  161 (187)
                      +.+|.+|+++++|+|++ +|.++      ...+++|++|+|+++|+|.+
T Consensus        75 ~~~~~~ai~e~~l~~~~-~P~i~------~~~~~~~~~~~f~~~~ev~P  116 (121)
T 1p9y_A           75 SRNFIDAIIKEKINPAG-APTYV------PGEYKLGEDFTYSVEFEVYP  116 (121)
T ss_dssp             HHHHHHHHHHTTCCCEE-EEEEE------ECCCCSSSCEEEEEEEECCC
T ss_pred             HHHHHHHHHHcCCCCCC-CCccc------ccccCCCCCEEEEEEEEEcC
Confidence            99999999999999999 99997      24678899999999999975

>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7

Probab=99.97  E-value=3.2e-31  Score=201.85  Aligned_cols=112  Identities=24%  Similarity=0.455  Sum_probs=95.9

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029820           34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  113 (187)
Q Consensus        34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~  113 (187)
                      |++++++ ++++++|+|+||+++++.+++++|++++++++ ||||||  |    |||+++|+++||.+.|++++++++|+
T Consensus         1 M~v~~e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~~~v~~ea~~~~i~   72 (112)
T 2d3o_1            1 MAELISK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFRP--G----KAPRKVIENRVGKGYVESQVRDRLLE   72 (112)
T ss_dssp             ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSC-BTTBCT--T----CCCSTTHHHHTTTTSSHHHHHHHHHH
T ss_pred             CceEEEc-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCcCC--C----CCCHHHHHHHhCHHHHHHHHHHHHHH
Confidence            8899999 99999999999999999999999999999999 999999  9    99999999999954799999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEeec
Q 029820          114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  161 (187)
Q Consensus       114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~~  161 (187)
                      .+|.+|+++++|+|++ +|.++      .. +++|++|+|+++|+|.+
T Consensus        73 ~~~~~ai~e~~l~~~~-~P~i~------~~-~~~~~~~~f~~~~ev~P  112 (112)
T 2d3o_1           73 THYSQGLRELGLNLVD-ATVDP------QD-VQSGQAFEFTVKGETYP  112 (112)
T ss_dssp             HHHHHHHHHSCCCCCC-EECCC------CC-CCSSSCCCEEEEEC---
T ss_pred             HHHHHHHHHcCCCCCC-CCccc------cc-ccCCCCEEEEEEEEecC
Confidence            9999999999999999 99997      24 78899999999999864

>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A

Probab=99.96  E-value=6.7e-30  Score=193.69  Aligned_cols=109  Identities=18%  Similarity=0.325  Sum_probs=103.3

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029820           34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  113 (187)
Q Consensus        34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~  113 (187)
                      |+++++++++++++|+|+||+++++++++++|++++++++ ||||||  |    |||+++|+++||. .|++++++++|+
T Consensus         1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i~   72 (109)
T 2nsc_A            1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD   72 (109)
T ss_dssp             CEEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CCCHHHHHHHHGG-GHHHHHHHHHHT
T ss_pred             CceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999997 699999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEeec
Q 029820          114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  161 (187)
Q Consensus       114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~~  161 (187)
                      . |.+|+++++|  ++ +|.++.      ..++ |++|+|+++|+|.+
T Consensus        73 ~-~~~ai~e~~l--~~-~P~i~~------~~~~-~~~~~f~~~~ev~P  109 (109)
T 2nsc_A           73 L-IPDTLKDRKL--IL-SPIVTE------RELK-DVTARVVVEVHEEP  109 (109)
T ss_dssp             T-HHHHTTTSCC--SS-CCCCCC------CCCC-CCCCCCCCCCCCCC
T ss_pred             H-HHHHHHHcCc--CC-CCcccc------cccc-CCCEEEEEEEEecC
Confidence            9 9999999999  88 999872      4577 99999999999864

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.95  E-value=5.9e-27  Score=210.66  Aligned_cols=131  Identities=21%  Similarity=0.339  Sum_probs=118.3

Q ss_pred             CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 029820           33 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV  112 (187)
Q Consensus        33 ~M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li  112 (187)
                      .|+++++++++++++|+|+||+++++.+++++|++++++++ ||||||  |    |||++||+++||. .|++++++++|
T Consensus         3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~yG~-~v~~ea~~~~~   74 (392)
T 1t11_A            3 HMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRK--G----KVPMKMVAKMYGK-AVRQDVLGEVM   74 (392)
T ss_dssp             CCEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCS--S----CCCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccCC-CCCCCC--C----CCCHHHHHHHHhH-HHHHHHHHHHH
Confidence            49999999999999999999999999999999999999999 999999  9    9999999999996 69999999999


Q ss_pred             HHHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEee------cCCcccccccccCCCCCc
Q 029820          113 RSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETSSSSSSD  178 (187)
Q Consensus       113 ~~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~------~~e~~~~~~~~~~~~~~~  178 (187)
                      +.+|.+|+++++|+|++ +|.++.      ..|++|++|+|+++|+|.      .+.++++++....++..|
T Consensus        75 ~~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~Pev~l~~y~~l~v~~~~~~Vtde~  139 (392)
T 1t11_A           75 QRHFIEAIVKEKINPAG-APTFAP------VEIGEGKDLVFTATFEVYPEVELKGLENIAVEKPAAEVTDAD  139 (392)
T ss_dssp             HHHHHHHHHHTTCCBSS-CCEEEE------EECCTTSCEEEEEEEEBCCCCCCTTCTTCEEESSCC---CTH
T ss_pred             HHHHHHHHHHcCCCcCC-CCCccc------cccCCCCCEEEEEEecCCCceecCCCCceEEEeCCCCcCHHH
Confidence            99999999999999999 999872      467889999999999987      466777777777666544

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.94  E-value=1.1e-26  Score=211.10  Aligned_cols=129  Identities=24%  Similarity=0.366  Sum_probs=118.1

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029820           34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  113 (187)
Q Consensus        34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~  113 (187)
                      |+++++++++++++|+|+||+++++.+++++|++++++++ ||||||  |    |||++||+++||. .|++++++++|+
T Consensus         1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~~~yG~-~v~~ea~~~~~~   72 (432)
T 1w26_A            1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGFRK--G----KVPMNIVAQRYGA-SVRQDVLGDLMS   72 (432)
T ss_dssp             CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTT-CGGGCC--S----SSCHHHHHHHHCT-TTHHHHHHHHHH
T ss_pred             CceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999997 699999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEee------cCCcccccccccCCCCC
Q 029820          114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETSSSSSS  177 (187)
Q Consensus       114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~------~~e~~~~~~~~~~~~~~  177 (187)
                      .+|.+|+++++|+|++ +|.++.      ..|.+|++|+|+++|+|.      .|.++++++....++..
T Consensus        73 ~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~~v~Pev~l~~y~~l~v~~~~~eVtde  135 (432)
T 1w26_A           73 RNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDA  135 (432)
T ss_dssp             HHHHHHHHHSCCCEEE-EEEEEE------CCCCTTSCEEEEEEEEECCCCCCCCTTTCBCCEEECCCCHH
T ss_pred             HHHHHHHHhcCCCCCC-CCCccc------cccCCCCcEEEEEEeccCCCeecCCCCceEEEecCCCcCHH
Confidence            9999999999999999 999872      467889999999999987      45677777776665543

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=99.86  E-value=3.2e-22  Score=181.84  Aligned_cols=118  Identities=17%  Similarity=0.268  Sum_probs=101.3

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029820           34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  113 (187)
Q Consensus        34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~  113 (187)
                      |++++++++++.+.|+|+||+++|+.+++++|++++++++ ||||||  |    |||++||+++||. .+++++++.+++
T Consensus         1 M~v~~~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ev~~~l~~   72 (433)
T 3gty_X            1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD   72 (433)
T ss_dssp             CEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCC-CCC--C--C----CCCSHHHHTTSTT-HHHHHHHHHHHT
T ss_pred             CceEEEEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCC-CCCCCC--C----CCcHHHHHHHhhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999999 699999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEee------cCCccccccc
Q 029820          114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETE  170 (187)
Q Consensus       114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~------~~e~~~~~~~  170 (187)
                      .++. ++.++  +|++ +|.++.      ..++ |++|+|+++|+|.      .|.++++++.
T Consensus        73 ~~~~-~~~~e--~~~~-~P~i~~------~~~~-~~~~~f~~~vev~Pev~l~~y~~l~v~~~  124 (433)
T 3gty_X           73 LIPD-TLKDR--KLIL-SPIVTE------RELK-DVTARVVVEVHEEPEVRIGDISKIEVEKV  124 (433)
T ss_dssp             TSTT-TSSSS--CBSS-CCEEEE------EEEC-SSCEEEEEEEEBCCEEECCCGGGSEEEEE
T ss_pred             HHHH-HHHhc--CCCC-CCCcCc------cccc-CCCEEEEEEEEecCCcccCCcCcceeeec
Confidence            9874 55555  6899 999862      3343 6689999999997      4556666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1p9ya_	117	Trigger factor ribosome-binding domain {Escherichi	99.97
d1t11a2	129	Trigger factor ribosome-binding domain {Vibrio cho	99.96

>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.2e-30  Score=195.80  Aligned_cols=113  Identities=24%  Similarity=0.386  Sum_probs=108.8

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029820           34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  113 (187)
Q Consensus        34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~  113 (187)
                      |+++++++++++++|+|+|++++|+.++++++++++++++ ||||||  |    |||+++|+++||. +|++++++++|+
T Consensus         1 M~v~v~~~~~~~~~l~i~v~~~~v~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yg~-~i~~e~~~~li~   72 (117)
T d1p9ya_           1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRK--G----KVPMNIVAQRYGA-SVRQDVLGDLMS   72 (117)
T ss_dssp             CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CSCHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CceEEEecCCCEEEEEEEECHHHHHHHHHHHHHHHHhcCC-CCCcCC--C----CccHHHHHHHHhH-HHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999998 699999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEeec
Q 029820          114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  161 (187)
Q Consensus       114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~~  161 (187)
                      .+|.+|+++++|+|++ +|.++      ...+++|++|+|+++|++++
T Consensus        73 ~~~~~al~e~~l~~~~-~P~i~------~~~~~~~~~~~f~~~~ev~P  113 (117)
T d1p9ya_          73 RNFIDAIIKEKINPAG-APTYV------PGEYKLGEDFTYSVEFEVYP  113 (117)
T ss_dssp             HHHHHHHHHTTCCCEE-EEEEE------ECCCCSSSCEEEEEEEECCC
T ss_pred             HHHHHHHHhcccCccC-CCccc------cccccCCCCEEEEEEEEeCC
Confidence            9999999999999999 99997      35688999999999999975

>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.96  E-value=3.6e-28  Score=187.01  Aligned_cols=113  Identities=21%  Similarity=0.368  Sum_probs=108.7

Q ss_pred             cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029820           34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR  113 (187)
Q Consensus        34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~  113 (187)
                      |++++++++++.++|+|+|++++|+.++++++++++++++ ||||||  |    |||+++|+++||. +|++++++++++
T Consensus         1 M~~~~~~~~~~~~~l~v~v~~~e~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~ii~k~~~~-~i~~e~~~~~i~   72 (129)
T d1t11a2           1 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRK--G----KVPMKMVAKMYGK-AVRQDVLGEVMQ   72 (129)
T ss_dssp             CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCS--S----CCCHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CceEEEEcCCcEEEEEEEECHHHHHHHHHHHHHHHHHhCC-CCCCCC--C----CCcHHHHHHHhhh-hHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999 999999  9    9999999999998 699999999999


Q ss_pred             HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEeec
Q 029820          114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK  161 (187)
Q Consensus       114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~~  161 (187)
                      .+|.+|+++++|+|++ +|.++      ...|+++++|.|+++|++++
T Consensus        73 ~~~~~~l~e~~i~~~~-~p~i~------~~~~~~~~~~~~~~~~ev~P  113 (129)
T d1t11a2          73 RHFIEAIVKEKINPAG-APTFA------PVEIGEGKDLVFTATFEVYP  113 (129)
T ss_dssp             HHHHHHHHHTTCCBSS-CCEEE------EEECCTTSCEEEEEEEEBCC
T ss_pred             HHHHHHHHhcccCccc-CCCcC------cccccCCCcEEEEEEEEEcC
Confidence            9999999999999999 99997      35788999999999999974