BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029821
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 87 YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQ------- 139
Y +Y L MAT P VSGV+ I +A Q L + +DI+K ++
Sbjct: 312 YPDDSYETLMGTAMAT-PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA 370
Query: 140 -AEGPSGPNRDYLFQLEKALLEL 161
A GP+G + DY + + +A L +
Sbjct: 371 DALGPTGWDADYGYGVVRAALAV 393
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 87 YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQA------ 140
Y +Y L MAT P VSGV+ I +A Q L + +DI+K ++
Sbjct: 312 YPDDSYETLMGTAMAT-PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA 370
Query: 141 --EGPSGPNRDYLFQLEKALLEL 161
GP+G + DY + + +A L +
Sbjct: 371 DDLGPTGWDADYGYGVVRAALAV 393
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 87 YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQA------ 140
Y +Y L MAT P VSGV+ I +A Q L + +DI+K ++
Sbjct: 312 YPDDSYETLMGTAMAT-PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA 370
Query: 141 --EGPSGPNRDYLFQLEKALLEL 161
GP+G + DY + + +A L +
Sbjct: 371 DDLGPTGWDADYGYGVVRAALAV 393
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 87 YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQA------ 140
Y +Y L MAT P VSGV+ I +A Q L + +DI+K ++
Sbjct: 312 YPDDSYETLMGTAMAT-PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA 370
Query: 141 --EGPSGPNRDYLFQLEKALLEL 161
GP+G + DY + + +A L +
Sbjct: 371 DDLGPTGWDADYGYGVVRAALAV 393
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 85 KQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQA---- 140
Y +Y L MAT P VSGV+ I +A Q L + +DI+K ++
Sbjct: 241 STYPDDSYETLMGTAMAT-PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHI 299
Query: 141 ----EGPSGPNRDYLFQLEKALLEL 161
GP+G + DY + + +A L +
Sbjct: 300 TADDLGPTGWDADYGYGVVRAALAV 324
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 87 YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQA------ 140
Y +Y L MAT P VSGV+ I +A Q L + +DI+K ++
Sbjct: 309 YPDDSYETLMGTAMAT-PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA 367
Query: 141 --EGPSGPNRDYLFQLEKALLEL 161
GP+G + DY + + +A L +
Sbjct: 368 DDLGPTGWDADYGYGVVRAALAV 390
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 85 KQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQA---- 140
Y +Y L MAT P VSGV+ I +A Q L + +DI+K ++
Sbjct: 241 STYPDDSYETLMGTAMAT-PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHI 299
Query: 141 ----EGPSGPNRDYLFQLEKALLEL 161
GP+G + DY + + +A L +
Sbjct: 300 TADDLGPTGWDADYGYGVVRAALAV 324
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 85 KQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQA---- 140
Y +Y L MAT P VSGV+ I +A Q L + +DI+K ++
Sbjct: 232 STYPDDSYETLMGTAMAT-PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHI 290
Query: 141 ----EGPSGPNRDYLFQLEKALLEL 161
GP+G + DY + + +A L +
Sbjct: 291 TADDLGPTGWDADYGYGVVRAALAV 315
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 85 KQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQA---- 140
Y +Y L MAT P VSGV+ I +A Q L + +DI+K ++
Sbjct: 230 STYPDDSYETLMGTAMAT-PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHI 288
Query: 141 ----EGPSGPNRDYLFQLEKALLEL 161
GP+G + DY + + +A L +
Sbjct: 289 TADDLGPTGWDADYGYGVVRAALAV 313
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 85 KQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQA---- 140
Y +Y L MAT P VSGV+ I +A Q L + +DI+K ++
Sbjct: 230 STYPDDSYETLMGTXMAT-PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHI 288
Query: 141 ----EGPSGPNRDYLFQLEKALLEL 161
GP+G + DY + + +A L +
Sbjct: 289 TADDLGPTGWDADYGYGVVRAALAV 313
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 85 KQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQA---- 140
Y +Y L MAT P VSGV+ I +A Q L + +DI+K ++
Sbjct: 230 STYPDDSYETLMGTCMAT-PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHI 288
Query: 141 ----EGPSGPNRDYLFQLEKALLEL 161
GP+G + DY + + +A L +
Sbjct: 289 TADDLGPTGWDADYGYGVVRAALAV 313
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 31/83 (37%)
Query: 2 WVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCW 61
+ F L W +H +RV RVF G H +PK T + W
Sbjct: 324 YTFDVQQLDWFTAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGW 383
Query: 62 GAAYKITKKEDKEVAVTYLEVRE 84
+T + +++ TY E R+
Sbjct: 384 KLGLVLTGRAKRDILKTYEEERQ 406
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 30/82 (36%)
Query: 2 WVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCW 61
+ F L W +H +RV RVF G H +PK T + W
Sbjct: 323 YTFDVQQLDWFTAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGW 382
Query: 62 GAAYKITKKEDKEVAVTYLEVR 83
+T + +++ TY E R
Sbjct: 383 KLGLVLTGRAKRDILKTYEEER 404
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 103 TPAVSGVMVYIASANKQLNSNYLGPASLEDI 133
TP VSGV + SA +N N L PA L+D+
Sbjct: 279 TPHVSGVAALVISAANSVNKN-LTPAELKDV 308
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 103 TPAVSGVMVYIASANKQLNSNYLGPASLEDI 133
TP VSGV + SA +N N L PA L+D+
Sbjct: 279 TPHVSGVAALVISAANSVNKN-LTPAELKDV 308
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 103 TPAVSGVMVYIASANKQLNSNYLGPASLEDI 133
TP VSGV + SA +N N L PA L+D+
Sbjct: 279 TPHVSGVAALVISAANSVNKN-LTPAELKDV 308
>pdb|3MIN|B Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|3MIN|D Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|B Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|2MIN|D Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii,
Oxidized State
pdb|1N2C|B Chain B, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|D Chain D, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1L5H|B Chain B, Femo-Cofactor Deficient Nitrogenase Mofe Protein
pdb|1M1N|B Chain B, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|D Chain D, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|F Chain F, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1N|H Chain H, Nitrogenase Mofe Protein From Azotobacter Vinelandii
pdb|1M1Y|B Chain B, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|D Chain D, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|J Chain J, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|L Chain L, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|B Chain B, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|D Chain D, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|J Chain J, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|L Chain L, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|2AFH|B Chain B, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|D Chain D, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|B Chain B, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|D Chain D, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|J Chain J, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|L Chain L, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|B Chain B, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|D Chain D, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|3K1A|B Chain B, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
pdb|3K1A|D Chain D, Insights Into Substrate Binding At Femo-Cofactor In
Nitrogenase From The Structure Of An Alpha-70ile Mofe
Protein Variant
Length = 522
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 149 DYLFQLEKALLELGCEDKHVI 169
D++ L K LLELGCE H++
Sbjct: 373 DFVMGLVKFLLELGCEPVHIL 393
>pdb|1G20|B Chain B, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|D Chain D, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|B Chain B, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|D Chain D, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1FP4|B Chain B, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
pdb|1FP4|D Chain D, Crystal Structure Of The Alpha-H195q Mutant Of Nitrogenase
pdb|3U7Q|B Chain B, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
pdb|3U7Q|D Chain D, A. Vinelandii Nitrogenase Mofe Protein At Atomic
Resolution
Length = 523
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 149 DYLFQLEKALLELGCEDKHVI 169
D++ L K LLELGCE H++
Sbjct: 374 DFVMGLVKFLLELGCEPVHIL 394
>pdb|4AS2|A Chain A, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS2|B Chain B, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS2|C Chain C, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS2|D Chain D, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Monoclinic Form
pdb|4AS3|A Chain A, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
pdb|4AS3|B Chain B, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
pdb|4AS3|C Chain C, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
pdb|4AS3|D Chain D, Pseudomonas Aeruginosa Phosphorylcholine Phosphatase.
Orthorhombic Form
Length = 327
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 48 RTVTLEP-----AEGEVCWGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMAT 102
R V +P A+ E G + ++ E+ ++ E +YD KA LDL P
Sbjct: 174 RMVAADPRYGYNAKPENVIGVTTLLKNRKTGELTTARKQIAEGKYDPKANLDLEVTPYLW 233
Query: 103 TPAV------SGVMVYI 113
TPA + ++ YI
Sbjct: 234 TPATWMAGKQAAILTYI 250
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 19/110 (17%)
Query: 46 PGRTVTLEPAEGEVCWGAAYKITKKEDKEV----AVTYLEVREKQYDKKAYLDLFTDP-- 99
PG+T +EP G + A+ K K V + T LE R A L + TDP
Sbjct: 85 PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAEL-ILTDPAK 143
Query: 100 ------------MATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQI 137
+ TP + + AN Q++ GP ED Q+
Sbjct: 144 GMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQV 193
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 19/110 (17%)
Query: 46 PGRTVTLEPAEGEVCWGAAYKITKKEDKEV----AVTYLEVREKQYDKKAYLDLFTDP-- 99
PG+T +EP G + A+ K K V + T LE R A L + TDP
Sbjct: 85 PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAEL-ILTDPAK 143
Query: 100 ------------MATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQI 137
+ TP + + AN Q++ GP ED Q+
Sbjct: 144 GMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQV 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,918,458
Number of Sequences: 62578
Number of extensions: 244002
Number of successful extensions: 613
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 25
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)