Query 029821
Match_columns 187
No_of_seqs 127 out of 719
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04752 ChaC: ChaC-like prote 100.0 1.7E-67 3.8E-72 425.2 20.7 173 1-177 1-177 (178)
2 KOG3182 Predicted cation trans 100.0 1.6E-66 3.5E-71 417.7 18.2 177 1-181 10-188 (212)
3 COG3703 ChaC Uncharacterized p 100.0 1.7E-58 3.7E-63 370.5 20.0 172 1-182 12-186 (190)
4 PHA03014 hypothetical protein; 99.8 2.9E-18 6.4E-23 136.7 15.3 142 1-177 3-160 (163)
5 cd06661 GGCT_like GGCT-like do 99.7 1.1E-17 2.4E-22 120.6 9.5 92 3-114 1-99 (99)
6 KOG4059 Uncharacterized conser 99.4 8.8E-13 1.9E-17 103.8 5.1 152 1-173 24-186 (193)
7 PF13772 AIG2_2: AIG2-like fam 99.2 4.7E-11 1E-15 85.0 7.4 80 59-171 1-83 (83)
8 PF06094 AIG2: AIG2-like famil 99.1 5.7E-10 1.2E-14 81.1 10.4 91 3-115 1-102 (102)
9 COG2105 Uncharacterized conser 98.0 6.8E-05 1.5E-09 57.1 9.6 92 3-117 4-102 (120)
10 KOG4450 Uncharacterized conser 93.4 0.14 3E-06 40.7 4.4 84 2-97 8-102 (168)
11 KOG4311 Histidinol dehydrogena 68.0 7.6 0.00017 33.9 3.9 73 45-125 148-230 (359)
12 COG4762 Uncharacterized protei 54.0 6.4 0.00014 31.4 1.0 10 1-10 100-109 (168)
13 TIGR00290 MJ0570_dom MJ0570-re 41.9 1E+02 0.0023 25.7 6.5 37 127-163 43-86 (223)
14 COG5452 Uncharacterized conser 39.0 41 0.00089 27.0 3.4 31 129-168 67-97 (180)
15 PRK10708 hypothetical protein; 33.3 45 0.00098 22.2 2.4 25 41-69 13-37 (62)
16 PF12616 DUF3775: Protein of u 31.4 74 0.0016 22.2 3.4 46 108-163 22-75 (75)
17 PF10781 DSRB: Dextransucrase 28.3 62 0.0013 21.6 2.4 25 41-69 13-37 (62)
18 PF11588 DUF3243: Protein of u 27.5 41 0.00089 23.9 1.5 34 148-181 11-44 (81)
19 PF08480 Disaggr_assoc: Disagg 27.2 29 0.00062 28.6 0.8 9 1-9 19-27 (198)
20 PF11784 DUF3320: Protein of u 26.6 60 0.0013 20.7 2.1 19 126-144 25-43 (52)
21 PF03869 Arc: Arc-like DNA bin 25.8 68 0.0015 20.3 2.2 33 129-162 14-46 (50)
22 COG4858 Uncharacterized membra 24.8 1.1E+02 0.0025 25.4 3.9 38 145-182 18-56 (226)
23 TIGR03342 dsrC_tusE_dsvC sulfu 24.4 1.8E+02 0.0038 21.7 4.6 49 130-180 23-74 (108)
24 PF04358 DsrC: DsrC like prote 24.3 2E+02 0.0044 21.3 4.9 50 130-182 24-77 (109)
25 PF13545 HTH_Crp_2: Crp-like h 24.2 1.5E+02 0.0033 19.3 4.0 30 127-163 28-57 (76)
26 KOG2285 E3 ubiquitin ligase, C 24.2 76 0.0016 30.0 3.0 40 147-186 465-504 (777)
27 PLN02863 UDP-glucoronosyl/UDP- 23.1 1.1E+02 0.0024 28.3 4.0 16 162-177 456-471 (477)
28 PRK11508 sulfur transfer prote 22.7 2E+02 0.0043 21.5 4.5 49 130-180 24-75 (109)
29 COG0013 AlaS Alanyl-tRNA synth 22.6 1.8E+02 0.004 29.4 5.5 51 130-180 283-338 (879)
30 PF09286 Pro-kuma_activ: Pro-k 22.1 91 0.002 23.5 2.8 40 121-167 41-80 (143)
31 PF05269 Phage_CII: Bacterioph 21.8 1.4E+02 0.003 21.6 3.5 48 135-182 27-81 (91)
32 PF00730 HhH-GPD: HhH-GPD supe 21.7 1.5E+02 0.0033 20.8 3.8 51 127-178 35-89 (108)
33 COG2979 Uncharacterized protei 20.9 1.3E+02 0.0028 25.4 3.5 29 146-177 192-220 (225)
34 KOG2631 Class II aldolase/addu 20.2 91 0.002 26.3 2.5 22 146-167 208-229 (238)
No 1
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=100.00 E-value=1.7e-67 Score=425.17 Aligned_cols=173 Identities=49% Similarity=0.946 Sum_probs=162.5
Q ss_pred CeEEEecccCCCCCCCCCeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCChHHHHHHH
Q 029821 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAVTYL 80 (187)
Q Consensus 1 ~wvFgYGSL~w~~~~~~~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~~~~~l~~L 80 (187)
|||||||||||||.|++.++++|+|+||+|+|||.|++|||||++||+|+||++++++.||||+|+|++ ++++++|++|
T Consensus 1 ~WVFGYGSLiW~p~f~~~e~~~a~i~Gy~R~F~~~s~~hRGTpe~PGrvltL~~~~~~~c~Gvayrv~~-~~~~~~l~~L 79 (178)
T PF04752_consen 1 LWVFGYGSLIWNPGFPYAERRPAYIKGYHRRFCQGSTDHRGTPEQPGRVLTLDPGEEGSCWGVAYRVPE-EDAEEVLEYL 79 (178)
T ss_pred CEEEEeccceeCCCCCccceEEEEecCcccceEeeccccCCCcCCCcceeeeeeCCCCEEEEEEEEecC-cCHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999888999999999997 8999999999
Q ss_pred HHHhh-cCcccceEEEEeC-CCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Q 029821 81 EVREK-QYDKKAYLDLFTD-PMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKAL 158 (187)
Q Consensus 81 d~RE~-~~y~~~~v~v~~~-~~~~~~~~~~alvYva~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~~l~~~L 158 (187)
|.||| ++|...++++++. +....+..+.|+|||++++ ||+|+|+++++++|++|++|+|+||+|.|||++|+++|
T Consensus 80 ~~RE~~~Gy~~~~v~~~~~~~~~~~~~~~~al~yv~~~~---n~~y~g~~~~~~~A~~Ia~a~G~~G~N~eYL~~l~~~L 156 (178)
T PF04752_consen 80 DEREMIGGYTRHWVPFYPEVDTDSGPVIVEALVYVADPD---NPQYLGPLPLEEIARIIATASGPSGSNREYLFNLAEAL 156 (178)
T ss_pred hhcccccccceEEEEEEEeccCCCCceEEEEEEEEecCC---CccccCCCCHHHHHHHHhheECcCcCCHHHHHHHHHHH
Confidence 99999 6788889999872 2222343468999999999 99999999999999999999999999999999999999
Q ss_pred HHcC--CCChhHHHHHHHHHh
Q 029821 159 LELG--CEDKHVIDLANTVRR 177 (187)
Q Consensus 159 ~~lg--i~D~~l~~L~~~v~~ 177 (187)
+++| |.|+||++|+++|++
T Consensus 157 ~~~gp~i~D~~l~~L~~~V~~ 177 (178)
T PF04752_consen 157 RELGPGIRDPHLFALERRVRE 177 (178)
T ss_pred HHhCCCCCChHHHHHHHHHhh
Confidence 9999 999999999999986
No 2
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-66 Score=417.71 Aligned_cols=177 Identities=54% Similarity=1.012 Sum_probs=171.2
Q ss_pred CeEEEecccCCCCCCCCCeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCChHHHHHHH
Q 029821 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAVTYL 80 (187)
Q Consensus 1 ~wvFgYGSL~w~~~~~~~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~~~~~l~~L 80 (187)
|||||||||||+|+|+|.++++|+|+||+|+|||.|++|||||+.||||+||++..+++||||+|+|++ +++.+++++|
T Consensus 10 lWVFGYGSLiW~Pgf~y~~~~~gfI~Gy~RrF~q~s~dHRGtp~~PGRv~TLi~~~e~~~wGvay~V~g-~~~~~~l~yl 88 (212)
T KOG3182|consen 10 LWVFGYGSLIWKPGFHYDESIPGFIKGYKRRFWQGSTDHRGTPEHPGRVATLIPYEEAITWGVAYRVRG-KQASEVLEYL 88 (212)
T ss_pred EEEEeecceeecCCCCccccchhhheehhhheeccccccCCCCCCCceeEEeecCCcceEeeEEEEecc-hhHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred HHHhhcCcccceEEEEeCCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Q 029821 81 EVREKQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLE 160 (187)
Q Consensus 81 d~RE~~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~ 160 (187)
+.||.++|....|+|++++....|.+..+||||+|++ |+.|+||.++++||++|++|+||||+|.|||++|+++|++
T Consensus 89 ~~RE~nGY~~~~v~f~~e~~~~~p~v~~vlvyvaTp~---N~~ylGp~ple~iArqI~t~~GpsG~N~eYLf~La~am~~ 165 (212)
T KOG3182|consen 89 NVRELNGYTTHEVEFYPEDAAELPEVLGVLVYVATPD---NEYYLGPAPLEEIARQIVTARGPSGPNREYLFNLAKAMRQ 165 (212)
T ss_pred HHHhhcCcceeeeeeeccCCCCCCceEEEEEEEecCC---CccccCCccHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999988877788889999999999 9999999999999999999999999999999999999999
Q ss_pred c--CCCChhHHHHHHHHHhHhcc
Q 029821 161 L--GCEDKHVIDLANTVRRILSE 181 (187)
Q Consensus 161 l--gi~D~~l~~L~~~v~~~~~~ 181 (187)
+ |+.|+||++|++.|++.+.+
T Consensus 166 l~p~~~D~hl~eL~~~Vrk~l~~ 188 (212)
T KOG3182|consen 166 LFPGAEDEHLFELENEVRKYLVE 188 (212)
T ss_pred cCCCchhHHHHHHHHHHHHHHhc
Confidence 9 89999999999999987763
No 3
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-58 Score=370.46 Aligned_cols=172 Identities=37% Similarity=0.650 Sum_probs=161.5
Q ss_pred CeEEEecccCCCCCCCCCeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCChHHHHHHH
Q 029821 1 MWVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAVTYL 80 (187)
Q Consensus 1 ~wvFgYGSL~w~~~~~~~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~~~~~l~~L 80 (187)
+||||||||||||.|+++++.+|+++||+|+||+.|++||||+++||+|++|+. ||+|+||+||||+ +++++++++|
T Consensus 12 ~WVFgYGSLmW~P~f~~~e~~~a~~~G~~Rsfc~~s~~~RGT~~~PGlvl~L~~--GGsc~GvafRip~-~~~~~v~~yL 88 (190)
T COG3703 12 LWVFGYGSLMWNPGFEFTEVRRATLHGYHRSFCLRSTDHRGTAEQPGLVLGLDR--GGSCEGVAYRIPE-AHAEEVLEYL 88 (190)
T ss_pred eEEEEecceeecCCccccceeEEEEecceeEEEEEEeeecCCcCCCceEEEeeC--CCcEEEEEEEcCc-hhhHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999985 8999999999996 8999999999
Q ss_pred HHHhhc---CcccceEEEEeCCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHH
Q 029821 81 EVREKQ---YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKA 157 (187)
Q Consensus 81 d~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~~l~~~ 157 (187)
++||++ .|...++++..+++. ...|+|||++++ |++|+|+++.+++|.+|+.|+|+||+|.|||++|.++
T Consensus 89 ~~RE~~~t~~y~p~~l~v~~~~g~----~~~al~~v~~~~---h~qyag~l~~~~~A~~ia~a~G~sG~n~eYL~~t~~h 161 (190)
T COG3703 89 REREMNYTLVYVPRWLPVELEGGR----RVNALVFVGDRK---HPQYAGDLDAEQIAAIIAAAVGLSGPNAEYLFNTLQH 161 (190)
T ss_pred HHhhccccceeeeEEEEEecCCCc----EEEEEEEEecCC---ccccCCCCcHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 999995 566777788777665 478999999999 9999999999999999999999999999999999999
Q ss_pred HHHcCCCChhHHHHHHHHHhHhcch
Q 029821 158 LLELGCEDKHVIDLANTVRRILSEE 182 (187)
Q Consensus 158 L~~lgi~D~~l~~L~~~v~~~~~~~ 182 (187)
|+++||+|+.|+.|...|.++..+.
T Consensus 162 L~~~gi~d~~l~~l~~~v~~~~~~~ 186 (190)
T COG3703 162 LRKLGIRDHNLEDLLELVAALLAEQ 186 (190)
T ss_pred HHhcCCcchhHHHHHHHHHHHHHHh
Confidence 9999999999999999998876654
No 4
>PHA03014 hypothetical protein; Provisional
Probab=99.80 E-value=2.9e-18 Score=136.74 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=110.5
Q ss_pred CeEEEecccCCCCCC--------CCCeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCC
Q 029821 1 MWVFGYGSLIWKAGF--------HFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKED 72 (187)
Q Consensus 1 ~wvFgYGSL~w~~~~--------~~~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~ 72 (187)
.|+|||||+|+...+ .......|.|.||.=+|.- |.. ..|.++||+|++|+.||||+|+|+.
T Consensus 3 ~~YfAYGSNl~~~qm~~Rcp~~~~a~~vg~a~L~~~~~~L~f-~~~------~~Ga~ATIvp~~g~~V~Gvlw~i~~--- 72 (163)
T PHA03014 3 KYYFGYGANQNINYLIHMHKLKIDFLNIKIGIILGHSFKLCY-SKE------IDSVIASIKKDDNGIVFGILYEFNE--- 72 (163)
T ss_pred eEEEEEccCcCHHHHHHhCCCCCCCceEEEEEeeccceEEec-cCC------cCCceEEEEECCCCEEEEEEEEeCH---
Confidence 489999999987644 3344677999977555552 222 3577799999999999999999997
Q ss_pred hHHHHHHHHHHhhc---CcccceEEEEeCCCCCCCceeEEEEE--EEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCc
Q 029821 73 KEVAVTYLEVREKQ---YDKKAYLDLFTDPMATTPAVSGVMVY--IASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPN 147 (187)
Q Consensus 73 ~~~~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvY--va~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n 147 (187)
+.++.||+.|+. -|++..++|.+.++.. ...|++| +.++. ++.+. +.=|+
T Consensus 73 --~dl~~LD~~EGvp~~~Y~~~~v~V~~~~~~~---~~~a~~Y~~~~~~~---~~~~~-----------------~~~Ps 127 (163)
T PHA03014 73 --SIMKKFDKQEFIDKNIYKLAKMNVLDLEDEK---IIEAQAYKAILDDD---NNMFY-----------------DAPNF 127 (163)
T ss_pred --HHHHHHhhhcCCCcCceEEEEEEEEeCCCCc---EEEEEEEehhcCCC---ccccc-----------------CCCCh
Confidence 899999999995 4888888998766321 3689999 65655 43221 12377
Q ss_pred HHHHHHHHHHHHHcCC---CChhHHHHHHHHHh
Q 029821 148 RDYLFQLEKALLELGC---EDKHVIDLANTVRR 177 (187)
Q Consensus 148 ~eYl~~l~~~L~~lgi---~D~~l~~L~~~v~~ 177 (187)
..||.-+.++.++.|+ +.+|+..|.+..+.
T Consensus 128 ~~Yl~~I~~Ga~e~Gl~~~P~~Y~~~l~~~~~~ 160 (163)
T PHA03014 128 NIYKDIIIDALIENNILDYPLWYIKHINNIFKE 160 (163)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 8999999999999999 99999999987765
No 5
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=99.74 E-value=1.1e-17 Score=120.62 Aligned_cols=92 Identities=25% Similarity=0.328 Sum_probs=78.2
Q ss_pred EEEecccCCCCCC-----CCCeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCChHHHH
Q 029821 3 VFGYGSLIWKAGF-----HFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAV 77 (187)
Q Consensus 3 vFgYGSL~w~~~~-----~~~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~~~~~l 77 (187)
||+|||||+.+.+ ......+|+|+||++.|+..+ .+++|++++++.|+|++|+++. +.+
T Consensus 1 ~F~YGsl~~~~~~~~~~~~~~~~~~a~l~g~~l~~~~~~-----------~~p~~~~~~~~~v~G~v~~i~~-----~~l 64 (99)
T cd06661 1 LFVYGTLMDGEVLHARLGRALFLGPATLKGYRLVFGGGS-----------GYPGLVPGPGARVWGELYEVDP-----EDL 64 (99)
T ss_pred CEEeccCCChhHhHhhCCCCceEEEEEecCcEEEecCCC-----------ccCEEEeCCCCEEEEEEEEECH-----HHH
Confidence 6999999999988 456789999999999999865 3356677788899999999985 899
Q ss_pred HHHHHHhhc--CcccceEEEEeCCCCCCCceeEEEEEEE
Q 029821 78 TYLEVREKQ--YDKKAYLDLFTDPMATTPAVSGVMVYIA 114 (187)
Q Consensus 78 ~~Ld~RE~~--~y~~~~v~v~~~~~~~~~~~~~alvYva 114 (187)
+.||.+|+. .|.+..++|...++. ...|++|+.
T Consensus 65 ~~LD~~E~~~~~Y~r~~v~v~~~~~~----~~~a~~Y~~ 99 (99)
T cd06661 65 ARLDAFEGVPGGYRREEVEVELEDGE----GVEAWVYVA 99 (99)
T ss_pred HhhhhhcCCCCCeEEEEEEEEeCCCC----EEEEEEEeC
Confidence 999999997 899989999887654 368999974
No 6
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=8.8e-13 Score=103.82 Aligned_cols=152 Identities=18% Similarity=0.258 Sum_probs=113.6
Q ss_pred CeEEEecccCCCCCCCCC-----eeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCChHH
Q 029821 1 MWVFGYGSLIWKAGFHFD-----ERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEV 75 (187)
Q Consensus 1 ~wvFgYGSL~w~~~~~~~-----~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~~~~ 75 (187)
+.+|||||+|--..+++. .-.+|.|..|+..|-..|..+ -|.++||.+.+|..|||++++++. +
T Consensus 24 FlYFafGSNlL~~RIh~rnpsA~~~c~a~L~dfrLdFan~S~~W------~G~vATI~~t~GdeVWG~vWKm~~-----s 92 (193)
T KOG4059|consen 24 FLYFAFGSNLLIKRIHIRNPSAVRICPALLPDFRLDFANESAGW------SGSVATIVPTQGDEVWGTVWKMDL-----S 92 (193)
T ss_pred hhhhhcccchhhhheeecCCCceeeccccCcceeeecccccccc------ccceeEEecCCCCeEEEEEEEccc-----c
Confidence 368999999988887664 358899999999999887765 466799999999999999999997 7
Q ss_pred HHHHHHHHhhc---CcccceEEEEeCCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHH
Q 029821 76 AVTYLEVREKQ---YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLF 152 (187)
Q Consensus 76 ~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~ 152 (187)
.+..||..|++ -|.+..|.|.+..|. ..+|-+|..+ |-.-+...|-...-..|..+.-..+--.||+.
T Consensus 93 nl~slDeQEgv~~G~Y~~~~V~V~t~eg~----~itcR~Yl~s-----nl~~~P~~PSp~Yk~~i~~GAkEn~lP~dY~q 163 (193)
T KOG4059|consen 93 NLPSLDEQEGVSQGIYEPRTVYVKTHEGE----SITCRAYLLS-----NLYELPKQPSPTYKQCIVKGAKENSLPEDYVQ 163 (193)
T ss_pred cCccchhhhcccccceEEEEEEEecCCCc----eeehhHhhhh-----hhhhccCCCCchHHhhhhhcccccCCcHHHHH
Confidence 88999999976 477777888887664 2467778875 32223334556677778877777888888876
Q ss_pred HHHHHHHHc---CCCChhHHHHHH
Q 029821 153 QLEKALLEL---GCEDKHVIDLAN 173 (187)
Q Consensus 153 ~l~~~L~~l---gi~D~~l~~L~~ 173 (187)
+|. +++.- |..|.++..+.+
T Consensus 164 kL~-aIe~NgfaG~V~~~ie~~~k 186 (193)
T KOG4059|consen 164 KLR-AIEHNGFAGQVNSYIERKLK 186 (193)
T ss_pred HHh-ccccCCcccchhhHHHHHHh
Confidence 653 33333 455666655543
No 7
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=99.22 E-value=4.7e-11 Score=85.00 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=64.3
Q ss_pred cEEEEEEEeCCCCChHHHHHHHHHHhhc---CcccceEEEEeCCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHH
Q 029821 59 VCWGAAYKITKKEDKEVAVTYLEVREKQ---YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAK 135 (187)
Q Consensus 59 ~~~Gv~y~v~~~~~~~~~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~~~g~~~~~~~a~ 135 (187)
.||||+|+|+. +.++.||++|+. .|++..++|.+.++. ...|+||++++. .. +
T Consensus 1 ~V~Gvly~l~~-----~d~~~LD~~Eg~~~g~Y~~~~v~V~~~~g~----~~~a~tY~~~~~---~~---~--------- 56 (83)
T PF13772_consen 1 RVWGVLYELSE-----EDLESLDRYEGVPIGAYRRIEVTVSTADGK----PVEAFTYVANPK---PE---G--------- 56 (83)
T ss_dssp EEEEEEEEEEG-----GGHHHHHHHTTTTTTSEEEEEEEEEETTCE----EEEEEEEEESSE---EE-------------
T ss_pred CEEEEEEEECH-----HHHHHHHHhcCCCCCCEEEEEEEEEcCCCC----EEEEEEEEcCCC---CC---C---------
Confidence 48999999997 789999999985 589988999886664 368999999875 22 1
Q ss_pred HHHhccCCCCCcHHHHHHHHHHHHHcCCCChhHHHH
Q 029821 136 QIIQAEGPSGPNRDYLFQLEKALLELGCEDKHVIDL 171 (187)
Q Consensus 136 ~I~~a~G~sG~n~eYl~~l~~~L~~lgi~D~~l~~L 171 (187)
=|+.+||..+.++.++.|++.+|+..|
T Consensus 57 ---------~Ps~~Yl~~i~~GA~e~gLp~~Yv~~L 83 (83)
T PF13772_consen 57 ---------PPSDRYLDLILRGAREHGLPAEYVEKL 83 (83)
T ss_dssp ------------HHHHHHHHHHHHHCT--HHHHHHH
T ss_pred ---------CCCHHHHHHHHHHHHHcCCCHHHHhhC
Confidence 289999999999999999999999876
No 8
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=99.14 E-value=5.7e-10 Score=81.11 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=63.4
Q ss_pred EEEecccCCCCCCCCCe--------eeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCC-cEEEEEEEeCCCCCh
Q 029821 3 VFGYGSLIWKAGFHFDE--------RVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGE-VCWGAAYKITKKEDK 73 (187)
Q Consensus 3 vFgYGSL~w~~~~~~~~--------~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~-~~~Gv~y~v~~~~~~ 73 (187)
||.|||||.....+..- ..++++. .+.+.. .|...+|++++++ .|+|.+|.|++
T Consensus 1 lFvYGTL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------~~~yP~l~~~~~~~~V~G~l~~v~~---- 63 (102)
T PF06094_consen 1 LFVYGTLMDGEVNHSVLGRPGAKFIGEPATLG--GRYLYG-----------GGGYPALVPGEGSGRVEGELYEVDD---- 63 (102)
T ss_dssp EEESSTTSTTSTTGHHGTSGSSEEEEEEEEEE--EEEEET-----------TSSCEEEESCTTSSEEEEEEEEE-H----
T ss_pred CEEECCCCCCCcChhhhhccceEEEEeeEEEE--eEEEeC-----------CCCCCEEEEcCCCCEEEEEEEEECH----
Confidence 79999999987664321 1333333 222221 2445667777776 99999999986
Q ss_pred HHHHHHHHHHhh--cCcccceEEEEeCCCCCCCceeEEEEEEEe
Q 029821 74 EVAVTYLEVREK--QYDKKAYLDLFTDPMATTPAVSGVMVYIAS 115 (187)
Q Consensus 74 ~~~l~~Ld~RE~--~~y~~~~v~v~~~~~~~~~~~~~alvYva~ 115 (187)
+.|+.||..|. ..|.+..++|...++. ...|+||+.+
T Consensus 64 -~~l~~LD~~E~~~~~Y~R~~v~v~~~~g~----~~~a~vYv~~ 102 (102)
T PF06094_consen 64 -EELARLDEYEGEGSLYRRVRVPVELGDGE----EVEAWVYVWN 102 (102)
T ss_dssp -HHHHHHHHHTTTTTSEEEEEEEEECCTSS----EEEEEEEEE-
T ss_pred -HHHHhhHhhcCCCCceEEEEEEEEeCCCC----EeEEEEEEEC
Confidence 67999999964 5899888999887765 2489999863
No 9
>COG2105 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=6.8e-05 Score=57.11 Aligned_cols=92 Identities=25% Similarity=0.324 Sum_probs=62.4
Q ss_pred EEEecccCCCCCCCC------CeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCChHHH
Q 029821 3 VFGYGSLIWKAGFHF------DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVA 76 (187)
Q Consensus 3 vFgYGSL~w~~~~~~------~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~~~~~ 76 (187)
||-||||+--..-+. .--.-+.++||+--.- . +..|| ++++ .+.|+|=+|++++ +.
T Consensus 4 vfVYGTLr~Ge~N~~~~~~~~~~~~~~~~~gy~ly~l-g-------~~YP~----~~~g-~~~V~Gevy~~d~-----~~ 65 (120)
T COG2105 4 VFVYGTLRPGEGNHHRYLKGARFLGEASTKGYQLYDL-G-------PGYPG----LVPG-EGKVHGEVYRIDE-----ET 65 (120)
T ss_pred EEEEeccCCCCcchHHHHhcCcccCcceeeeeeeecc-C-------CCCcE----EcCC-CCEEEEEEEEECH-----HH
Confidence 899999984432211 1234566777544332 1 22454 4454 3599999999986 99
Q ss_pred HHHHHHHhhc-CcccceEEEEeCCCCCCCceeEEEEEEEecC
Q 029821 77 VTYLEVREKQ-YDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117 (187)
Q Consensus 77 l~~Ld~RE~~-~y~~~~v~v~~~~~~~~~~~~~alvYva~~~ 117 (187)
|+.||.-|.. .|.+..+.+.+..++. .|++|+.+++
T Consensus 66 l~~LDelE~~~~y~r~~v~v~~~~G~~-----~aw~Y~y~~~ 102 (120)
T COG2105 66 LEALDELEDYGGYYRREVEVTTPLGSK-----EAWLYVYAER 102 (120)
T ss_pred HhhhhhhhccCceEEEEEEEEcCCCCE-----EEEEEEEcCC
Confidence 9999999997 3555566676666641 6899999887
No 10
>KOG4450 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.39 E-value=0.14 Score=40.69 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=55.5
Q ss_pred eEEEecccCCCCCCCCCeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeE-------eeeC--CCCcEEEEEEEeCCCCC
Q 029821 2 WVFGYGSLIWKAGFHFDERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVT-------LEPA--EGEVCWGAAYKITKKED 72 (187)
Q Consensus 2 wvFgYGSL~w~~~~~~~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~-------l~~~--~~~~~~Gv~y~v~~~~~ 72 (187)
-||-||.|=-...-++.-.. .+.|..+-+++..+. -..| +|.+ |... .|-.|+|=+|.|++
T Consensus 8 lvFVYGTLKrg~pNh~~L~d--~~~g~A~F~gr~~T~----~kyP-LVigt~ynIPfLLnkpGsG~~V~GElY~Vd~--- 77 (168)
T KOG4450|consen 8 LVFVYGTLKRGQPNHFLLED--LINGDAVFIGRGTTL----LKYP-LVIGTRYNIPFLLNKPGSGYHVEGELYEVDE--- 77 (168)
T ss_pred EEEEEeeecCCCCCchhhhh--ccCCceEEEEeceec----cccc-eEeecccCCceEEcCCCCcceeeeEEEEeCH---
Confidence 48999999765444433222 237888888776543 3455 4443 2222 34579999999987
Q ss_pred hHHHHHHHHHHhhc--CcccceEEEEe
Q 029821 73 KEVAVTYLEVREKQ--YDKKAYLDLFT 97 (187)
Q Consensus 73 ~~~~l~~Ld~RE~~--~y~~~~v~v~~ 97 (187)
.-|..||.-|.. +|.++.+.|..
T Consensus 78 --rmL~~LD~lE~~~~~Y~R~~i~v~~ 102 (168)
T KOG4450|consen 78 --RMLSRLDELEGCPNHYEREPIRVIE 102 (168)
T ss_pred --HHHhhhHhhcccHHHhhhhhhHHHH
Confidence 889999999985 77777654543
No 11
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=67.96 E-value=7.6 Score=33.86 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=54.3
Q ss_pred CCceeeEeeeCCCCcEEEEEEEeCCCCChHHHHHHHHHHhhcCcccceEEEEeCCCCCCCc----------eeEEEEEEE
Q 029821 45 FPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAVTYLEVREKQYDKKAYLDLFTDPMATTPA----------VSGVMVYIA 114 (187)
Q Consensus 45 ~PG~vl~l~~~~~~~~~Gv~y~v~~~~~~~~~l~~Ld~RE~~~y~~~~v~v~~~~~~~~~~----------~~~alvYva 114 (187)
.-|.+.+|+-.+-|.|-|.+|.--+ ..-+.++-+-++||.+.--++|+.+.++... -..+|.|+.
T Consensus 148 ~dgl~~tlvv~~~g~~Lglvysske-----s~a~ti~~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v 222 (359)
T KOG4311|consen 148 KDGLVATLVVVDTGAVLGLVYSSKE-----SLATTISSGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLV 222 (359)
T ss_pred CCCeEEEEEehhhhhhhhhhcccHH-----HHHHHHhcCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEE
Confidence 4578889988888999999997754 6666888888888887666677654332111 126899999
Q ss_pred ecCCCCCCCCC
Q 029821 115 SANKQLNSNYL 125 (187)
Q Consensus 115 ~~~~~~n~~~~ 125 (187)
+++ +|-|+
T Consensus 223 ~q~---g~gfC 230 (359)
T KOG4311|consen 223 TQD---GPGFC 230 (359)
T ss_pred ecC---CCccc
Confidence 999 88665
No 12
>COG4762 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.03 E-value=6.4 Score=31.38 Aligned_cols=10 Identities=50% Similarity=0.920 Sum_probs=8.3
Q ss_pred CeEEEecccC
Q 029821 1 MWVFGYGSLI 10 (187)
Q Consensus 1 ~wvFgYGSL~ 10 (187)
.|.||||+|=
T Consensus 100 ~~gf~yGTL~ 109 (168)
T COG4762 100 VRGFGYGTLP 109 (168)
T ss_pred eeEEeecccC
Confidence 4899999983
No 13
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=41.93 E-value=1e+02 Score=25.73 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHhccC-------CCCCcHHHHHHHHHHHHHcCC
Q 029821 127 PASLEDIAKQIIQAEG-------PSGPNRDYLFQLEKALLELGC 163 (187)
Q Consensus 127 ~~~~~~~a~~I~~a~G-------~sG~n~eYl~~l~~~L~~lgi 163 (187)
..+..++++..|.|-| ..|++.+|+..+.+.|+++|+
T Consensus 43 H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv 86 (223)
T TIGR00290 43 HGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDV 86 (223)
T ss_pred cccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCC
Confidence 3344577788888888 357788999999999999873
No 14
>COG5452 Uncharacterized conserved protein [Function unknown]
Probab=38.96 E-value=41 Score=27.02 Aligned_cols=31 Identities=29% Similarity=0.577 Sum_probs=26.5
Q ss_pred CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHcCCCChhH
Q 029821 129 SLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELGCEDKHV 168 (187)
Q Consensus 129 ~~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~lgi~D~~l 168 (187)
..+|+|+.|. -+|...+-+.||+|||.|.-|
T Consensus 67 a~qeiaQei~---------Daff~dvDhs~RElGigD~gV 97 (180)
T COG5452 67 AAQEIAQEIV---------DAFFKDVDHSLRELGIGDQGV 97 (180)
T ss_pred HHHHHHHHHH---------HHHHhhhhHHHHHhCCCcccc
Confidence 5678888887 479999999999999999865
No 15
>PRK10708 hypothetical protein; Provisional
Probab=33.34 E-value=45 Score=22.23 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=20.4
Q ss_pred CCCCCCceeeEeeeCCCCcEEEEEEEeCC
Q 029821 41 GTPKFPGRTVTLEPAEGEVCWGAAYKITK 69 (187)
Q Consensus 41 Gt~~~PG~vl~l~~~~~~~~~Gv~y~v~~ 69 (187)
|-|.++|.+|++++ --+|+.|.|+=
T Consensus 13 G~~rR~G~iLavE~----F~EG~MyLvaL 37 (62)
T PRK10708 13 GGPRRPGVVLAVEE----FSEGTMYLVSL 37 (62)
T ss_pred CCccccceEEEEee----ccCcEEEEEEc
Confidence 67889999999987 45688898873
No 16
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=31.40 E-value=74 Score=22.16 Aligned_cols=46 Identities=26% Similarity=0.411 Sum_probs=31.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCC-CCCcHHHHHH-------HHHHHHHcCC
Q 029821 108 GVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGP-SGPNRDYLFQ-------LEKALLELGC 163 (187)
Q Consensus 108 ~alvYva~~~~~~n~~~~g~~~~~~~a~~I~~a~G~-sG~n~eYl~~-------l~~~L~~lgi 163 (187)
.||.||+.- +-+.++-...++.|.+. +++..+||+. |.++|..+|+
T Consensus 22 vALmwiGRG----------d~~~eew~~a~~~A~~~~~~~ta~YLl~~p~ladyLe~GL~~lG~ 75 (75)
T PF12616_consen 22 VALMWIGRG----------DFEAEEWEEAVAEARERASARTADYLLGTPMLADYLEEGLEALGY 75 (75)
T ss_pred HHHHHhcCC----------CCCHHHHHHHHHHHHHhccchHHHHHHcCCcHHHHHHHHHHHcCC
Confidence 356677753 34667777777777766 7888999985 5555655553
No 17
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=28.33 E-value=62 Score=21.57 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=20.3
Q ss_pred CCCCCCceeeEeeeCCCCcEEEEEEEeCC
Q 029821 41 GTPKFPGRTVTLEPAEGEVCWGAAYKITK 69 (187)
Q Consensus 41 Gt~~~PG~vl~l~~~~~~~~~Gv~y~v~~ 69 (187)
|-|-++|.++++++ --+|+.|.|+=
T Consensus 13 G~~rR~G~ilavE~----F~EG~MYLvaL 37 (62)
T PF10781_consen 13 GGPRREGVILAVEP----FNEGTMYLVAL 37 (62)
T ss_pred CcccccceEEEEee----ccCcEEEEEEc
Confidence 67889999999987 45688899873
No 18
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=27.50 E-value=41 Score=23.92 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHhHhcc
Q 029821 148 RDYLFQLEKALLELGCEDKHVIDLANTVRRILSE 181 (187)
Q Consensus 148 ~eYl~~l~~~L~~lgi~D~~l~~L~~~v~~~~~~ 181 (187)
.+||-.-++.-+++|++|..|..++.+|...++.
T Consensus 11 K~~Lg~~v~~ae~~Gms~e~i~~~A~~iGdyLA~ 44 (81)
T PF11588_consen 11 KDFLGDRVEQAEKLGMSEETIANLAYQIGDYLAK 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 4688888888889999999999999999887753
No 19
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=27.18 E-value=29 Score=28.63 Aligned_cols=9 Identities=44% Similarity=1.416 Sum_probs=7.3
Q ss_pred CeEEEeccc
Q 029821 1 MWVFGYGSL 9 (187)
Q Consensus 1 ~wvFgYGSL 9 (187)
+|+|||++-
T Consensus 19 IWl~gy~~~ 27 (198)
T PF08480_consen 19 IWLFGYDGS 27 (198)
T ss_pred EEEEecCCC
Confidence 699999843
No 20
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=26.58 E-value=60 Score=20.71 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHhccCCC
Q 029821 126 GPASLEDIAKQIIQAEGPS 144 (187)
Q Consensus 126 g~~~~~~~a~~I~~a~G~s 144 (187)
||.+.+.+++.|++|.|.+
T Consensus 25 gPI~~~~L~~Ri~~a~G~~ 43 (52)
T PF11784_consen 25 GPIHEDELARRIARAWGLS 43 (52)
T ss_pred CCccHHHHHHHHHHHcCcc
Confidence 6677777777777777764
No 21
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=25.85 E-value=68 Score=20.34 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=27.9
Q ss_pred CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHcC
Q 029821 129 SLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELG 162 (187)
Q Consensus 129 ~~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~lg 162 (187)
.+-+..+..|...|.| -|.|=+..|.++|++-|
T Consensus 14 ~l~~~lk~~A~~~gRS-~NsEIv~~L~~~l~~e~ 46 (50)
T PF03869_consen 14 ELKEKLKERAEENGRS-MNSEIVQRLEEALKKEG 46 (50)
T ss_dssp HHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHhccc
Confidence 4567788899999999 99999999999998865
No 22
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=24.84 E-value=1.1e+02 Score=25.38 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHHHHHHcCCCChhHHHHH-HHHHhHhcch
Q 029821 145 GPNRDYLFQLEKALLELGCEDKHVIDLA-NTVRRILSEE 182 (187)
Q Consensus 145 G~n~eYl~~l~~~L~~lgi~D~~l~~L~-~~v~~~~~~~ 182 (187)
-+|.||+....++|..-|-+|..+..+- ..+-+++..+
T Consensus 18 kkNqeyvh~vtkqli~~gksdeeik~Il~e~ipqIleeQ 56 (226)
T COG4858 18 KKNQEYVHEVTKQLIGDGKSDEEIKIILEEMIPQILEEQ 56 (226)
T ss_pred HHhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 4899999999999999999999998874 4445665533
No 23
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=24.44 E-value=1.8e+02 Score=21.70 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=32.9
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHc---CCCChhHHHHHHHHHhHhc
Q 029821 130 LEDIAKQIIQAEGPSGPNRDYLFQLEKALLEL---GCEDKHVIDLANTVRRILS 180 (187)
Q Consensus 130 ~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~l---gi~D~~l~~L~~~v~~~~~ 180 (187)
.+++|..||+..|.. =.|=-+++.+.||+. --.-|-+..|.+.+.+-+.
T Consensus 23 ~e~vA~~lA~~egie--LT~~Hw~vI~~lR~~y~e~~~~P~~R~l~K~~~~~~g 74 (108)
T TIGR03342 23 SEDVAEALAEEEGIE--LTEAHWEVINFLRDFYAEYNISPAVRMLVKAMGKKLG 74 (108)
T ss_pred CHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHhC
Confidence 379999999999974 344456677777764 2344566777776665444
No 24
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=24.33 E-value=2e+02 Score=21.31 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=31.6
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHc----CCCChhHHHHHHHHHhHhcch
Q 029821 130 LEDIAKQIIQAEGPSGPNRDYLFQLEKALLEL----GCEDKHVIDLANTVRRILSEE 182 (187)
Q Consensus 130 ~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~l----gi~D~~l~~L~~~v~~~~~~~ 182 (187)
.+++|+.||+..|.. - .|=-+++.+.||+. |+. |-+..|.+.+..-...+
T Consensus 24 ~eevA~~lA~~egI~-L-td~HW~vI~flR~~y~~~~~~-P~~R~l~K~~~~~~g~~ 77 (109)
T PF04358_consen 24 NEEVAEALAKEEGIE-L-TDEHWEVIRFLRDYYQEYGVS-PAIRMLIKALGEDLGED 77 (109)
T ss_dssp -HHHHHHHHHCTT-S----HHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHCSTT
T ss_pred CHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHHHHHCCC-CcHHHHHHHHhhhcCCC
Confidence 479999999999998 3 44456777788775 433 67777777776654433
No 25
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=24.18 E-value=1.5e+02 Score=19.26 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHcCC
Q 029821 127 PASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELGC 163 (187)
Q Consensus 127 ~~~~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~lgi 163 (187)
+.+.+++|..+ |.+.+.+.++.+.|++-|+
T Consensus 28 ~lt~~~iA~~~-------g~sr~tv~r~l~~l~~~g~ 57 (76)
T PF13545_consen 28 PLTQEEIADML-------GVSRETVSRILKRLKDEGI 57 (76)
T ss_dssp ESSHHHHHHHH-------TSCHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHH-------CCCHHHHHHHHHHHHHCCC
Confidence 35667777765 6889999999999999874
No 26
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones]
Probab=24.18 E-value=76 Score=30.05 Aligned_cols=40 Identities=25% Similarity=0.181 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHHHcCCCChhHHHHHHHHHhHhcchhhhC
Q 029821 147 NRDYLFQLEKALLELGCEDKHVIDLANTVRRILSEEDSAS 186 (187)
Q Consensus 147 n~eYl~~l~~~L~~lgi~D~~l~~L~~~v~~~~~~~~~~~ 186 (187)
..|-=...++.||+.|++-+||..|++..+.+--.+|.||
T Consensus 465 DsEkEE~mVewLREvGMPaDyVNkLaRMfQDIkvseDlN~ 504 (777)
T KOG2285|consen 465 DSEKEEMMVEWLREVGMPADYVNKLARMFQDIKVSEDLNS 504 (777)
T ss_pred chhHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccHHHHH
Confidence 3455567888899999999999999998887766666554
No 27
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=23.10 E-value=1.1e+02 Score=28.27 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=11.2
Q ss_pred CCCChhHHHHHHHHHh
Q 029821 162 GCEDKHVIDLANTVRR 177 (187)
Q Consensus 162 gi~D~~l~~L~~~v~~ 177 (187)
|.++.+|.+|.+.+++
T Consensus 456 GSS~~~l~~~v~~i~~ 471 (477)
T PLN02863 456 GSSVKDLDGFVKHVVE 471 (477)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 5777777777776654
No 28
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=22.69 E-value=2e+02 Score=21.50 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=32.1
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHc---CCCChhHHHHHHHHHhHhc
Q 029821 130 LEDIAKQIIQAEGPSGPNRDYLFQLEKALLEL---GCEDKHVIDLANTVRRILS 180 (187)
Q Consensus 130 ~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~l---gi~D~~l~~L~~~v~~~~~ 180 (187)
.+++|..||+..|.. =.|=-+++.+.||+. --.-|-+..|.+.+.+.+.
T Consensus 24 ~e~vA~~lA~~egie--LT~~HW~VI~~lR~~y~e~~~~P~~R~l~K~~~~~~g 75 (109)
T PRK11508 24 SEPLAVVIAENEGIS--LSPEHWEVVRFVRDFYLEFNTSPAIRMLVKAMANKFG 75 (109)
T ss_pred CHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHhC
Confidence 379999999999964 334445666777664 2344566777776665443
No 29
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.58 E-value=1.8e+02 Score=29.40 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=43.2
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHcCCCChhHHHHHHHHHhHhc
Q 029821 130 LEDIAKQIIQAEGPSGPNRDYLFQ-----LEKALLELGCEDKHVIDLANTVRRILS 180 (187)
Q Consensus 130 ~~~~a~~I~~a~G~sG~n~eYl~~-----l~~~L~~lgi~D~~l~~L~~~v~~~~~ 180 (187)
.-.++-.|+...-||-..+-||+| ...+.+.||+..+-|.+|+..+.+.+.
T Consensus 283 ~Rs~~f~iaDGv~PSNegrGYvlRriiRRa~R~~~~LG~~~~fl~~LV~~~~~~m~ 338 (879)
T COG0013 283 IRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIKEPFLYKLVDTVIDEMG 338 (879)
T ss_pred HHHHHHHHhCCCCcCCCCccHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHh
Confidence 457888999999999999999987 467777889999999999988877655
No 30
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=22.12 E-value=91 Score=23.52 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=27.0
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHcCCCChh
Q 029821 121 NSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELGCEDKH 167 (187)
Q Consensus 121 n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~lgi~D~~ 167 (187)
+|.|---++.+++++..+ |+.+-+..+...|++.|+....
T Consensus 41 s~~Ygk~Lt~~e~~~~~~-------p~~~~v~~V~~wL~~~G~~~~~ 80 (143)
T PF09286_consen 41 SPNYGKYLTPEEFAALFA-------PSPEDVAAVKSWLKSHGLTVVE 80 (143)
T ss_dssp STTTT----HHHHHHHHS---------HHHHHHHHHHHHHCT-EEEE
T ss_pred CcccccCCCHHHHHHHHC-------CCHHHHHHHHHHHHHcCCceeE
Confidence 777766788888888764 8899999999999999875544
No 31
>PF05269 Phage_CII: Bacteriophage CII protein; InterPro: IPR007933 The CII protein is a transcription activator, conserved in bacteriophage lambda and related phages, that plays a key role in the decision between lytic or lysogenic phage development. CII is regulated at multiple levels including transcription, translation initiation, mRNA stability, and proteolysis []. Conditions that stabilise cII favour lysogenic development. The lambda CII protein activates three specific promoters, binding to direct repeat sequences rather than the more usual inverted repeats. Structurally, CII is a homotetramer where each monomer is composed of four alpha helices and a disordered C terminus [, ]. The alpha helical region is responsible for DNA binding and multimerisation. The homotetramer has an unusual spatial arrangement that allows recognition of the direct repeat sequences.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1ZS4_C 1ZPQ_C 1XWR_A.
Probab=21.84 E-value=1.4e+02 Score=21.60 Aligned_cols=48 Identities=25% Similarity=0.461 Sum_probs=35.5
Q ss_pred HHHHhccCCCCCc-----HHHHHHHHHHHHHc--CCCChhHHHHHHHHHhHhcch
Q 029821 135 KQIIQAEGPSGPN-----RDYLFQLEKALLEL--GCEDKHVIDLANTVRRILSEE 182 (187)
Q Consensus 135 ~~I~~a~G~sG~n-----~eYl~~l~~~L~~l--gi~D~~l~~L~~~v~~~~~~~ 182 (187)
..+|.+.|.+-+. .+++.+.+..|..| ++.|+.+.++++.+.+++..+
T Consensus 27 ~~vA~~~Gv~eStISR~k~~~~~~~a~lLa~L~~~v~~~~i~~~~~~~~~~l~~~ 81 (91)
T PF05269_consen 27 KKVAEAMGVDESTISRWKNDFIEKMAMLLAALELGVEDSEIARVAKQAAEILTKK 81 (91)
T ss_dssp HHHHHHHTSSTTTHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHhCCCHHHHHHHHhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 3455666665443 47889999999876 689999999999998877543
No 32
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=21.67 E-value=1.5e+02 Score=20.80 Aligned_cols=51 Identities=27% Similarity=0.314 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHc----CCCChhHHHHHHHHHhH
Q 029821 127 PASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLEL----GCEDKHVIDLANTVRRI 178 (187)
Q Consensus 127 ~~~~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~l----gi~D~~l~~L~~~v~~~ 178 (187)
.++.+++.+.|.. .|-++.=..||.++++.+..- -..|-|+.....++..+
T Consensus 35 ~~~~~el~~~i~~-~G~~~~ka~~i~~~a~~~~~~~d~~~~~D~~v~r~~~r~~~~ 89 (108)
T PF00730_consen 35 EASEEELRELIRP-LGFSRRKAKYIIELARAILGRPDPFPPVDTHVRRVLQRLGGI 89 (108)
T ss_dssp CSHHHHHHHHHTT-STSHHHHHHHHHHHHHHHHC-SSSS-TTSHHHHHHHHHHTSS
T ss_pred hCCHHHHHHHhhc-cCCCHHHHHHHHHHHHHhhhcccceecCcHHHHHHHHHHcCC
Confidence 3567788877775 777778899999999999842 26889999888887543
No 33
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.93 E-value=1.3e+02 Score=25.36 Aligned_cols=29 Identities=38% Similarity=0.423 Sum_probs=23.6
Q ss_pred CcHHHHHHHHHHHHHcCCCChhHHHHHHHHHh
Q 029821 146 PNRDYLFQLEKALLELGCEDKHVIDLANTVRR 177 (187)
Q Consensus 146 ~n~eYl~~l~~~L~~lgi~D~~l~~L~~~v~~ 177 (187)
.-+-||..|+..| |++|.-+..|++.|..
T Consensus 192 ~Er~YL~~La~~L---~L~dalvd~lE~qv~~ 220 (225)
T COG2979 192 MERSYLNALAGAL---GLPDALVDHLERQVGQ 220 (225)
T ss_pred HHHHHHHHHHHHh---CCCHHHHHHHHHHHHh
Confidence 3456888887766 9999999999999875
No 34
>KOG2631 consensus Class II aldolase/adducin N-terminal domain protein [Carbohydrate transport and metabolism]
Probab=20.24 E-value=91 Score=26.30 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=18.9
Q ss_pred CcHHHHHHHHHHHHHcCCCChh
Q 029821 146 PNRDYLFQLEKALLELGCEDKH 167 (187)
Q Consensus 146 ~n~eYl~~l~~~L~~lgi~D~~ 167 (187)
.+.||||.++=.|+++||+-++
T Consensus 208 EcydYLfelaikm~klgipp~~ 229 (238)
T KOG2631|consen 208 ECYDYLFELAIKMKKLGIPPEQ 229 (238)
T ss_pred HHHHHHHHHHHHHHHcCCChhh
Confidence 4689999999999999998544
Done!