Query 029821
Match_columns 187
No_of_seqs 127 out of 719
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:12:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cry_A Gamma-glutamyl cyclotra 100.0 3.6E-29 1.2E-33 201.6 6.9 158 1-177 17-182 (188)
2 2qik_A UPF0131 protein YKQA; N 99.9 3.8E-28 1.3E-32 207.1 9.8 139 1-164 128-277 (285)
3 2jqv_A AT3G28950, AIG2 protein 99.8 4.2E-19 1.4E-23 140.0 9.7 132 1-162 9-146 (165)
4 2g0q_A AT5G39720.1 protein; st 99.7 2.4E-17 8.2E-22 131.3 10.8 134 1-164 18-157 (173)
5 1xhs_A Hypothetical UPF0131 pr 98.9 4.5E-09 1.6E-13 78.8 9.7 89 1-117 1-96 (121)
6 1v30_A Hypothetical UPF0131 pr 98.9 6E-09 2E-13 78.5 7.9 88 1-117 8-101 (124)
7 3jud_A AIG2-like domain-contai 98.9 5.5E-09 1.9E-13 81.4 7.8 114 2-125 3-129 (153)
8 1vkb_A Hypothetical protein; g 98.6 7.1E-08 2.4E-12 75.6 7.2 98 2-117 15-132 (161)
9 2qik_A UPF0131 protein YKQA; N 98.1 1.4E-05 4.9E-10 67.4 10.0 91 2-117 4-102 (285)
10 3cry_A Gamma-glutamyl cyclotra 83.2 0.86 2.9E-05 35.4 3.3 31 143-173 132-162 (188)
11 4fp9_B Mterf domain-containing 53.0 23 0.0008 30.1 5.8 53 127-179 89-141 (335)
12 2dah_A Ubiquilin-3; UBA domain 43.4 18 0.0006 22.5 2.6 38 146-184 5-51 (54)
13 1yx3_A Hypothetical protein DS 40.3 39 0.0013 25.1 4.5 49 130-181 47-99 (132)
14 1sau_A Sulfite reductase, desu 36.3 51 0.0018 23.8 4.5 59 121-182 15-84 (115)
15 3qoq_A Alginate and motility r 33.8 48 0.0016 21.8 3.7 39 127-166 27-66 (69)
16 1yfs_A Alanyl-tRNA synthetase; 30.8 99 0.0034 27.6 6.3 48 133-180 277-329 (465)
17 3m66_A Mterf3, mterf domain-co 29.5 69 0.0024 25.5 4.8 45 129-173 89-134 (270)
18 2ztg_A Alanyl-tRNA synthetase; 26.5 1.3E+02 0.0044 28.4 6.6 46 135-181 349-399 (739)
19 3m66_A Mterf3, mterf domain-co 26.4 1.1E+02 0.0038 24.2 5.5 43 129-171 54-96 (270)
20 2zze_A Alanyl-tRNA synthetase; 25.3 1.4E+02 0.0049 28.2 6.7 45 135-180 350-399 (752)
21 4fjo_A DNA repair protein REV1 24.4 84 0.0029 21.6 3.9 51 121-175 2-56 (97)
22 3idw_A Actin cytoskeleton-regu 23.9 65 0.0022 21.4 3.0 32 155-186 41-72 (72)
23 3hy0_A Alanyl-tRNA synthetase; 20.8 1.1E+02 0.0037 27.2 4.6 45 136-180 293-342 (441)
24 3mva_O Transcription terminati 20.2 1.2E+02 0.004 25.2 4.6 46 128-173 63-108 (343)
No 1
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=99.95 E-value=3.6e-29 Score=201.58 Aligned_cols=158 Identities=15% Similarity=0.242 Sum_probs=124.6
Q ss_pred CeEEEecccCCCCCCCC-----CeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCChHH
Q 029821 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEV 75 (187)
Q Consensus 1 ~wvFgYGSL~w~~~~~~-----~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~~~~ 75 (187)
+|||+||||||++.|.. ....+|+|+||+|.|++.|.+| ++..+|.+++|++++++.|||++|+|++ +
T Consensus 17 ~~~FaYGSlm~~~~~~~~~~~~~~~~~a~l~gy~l~f~~~~~~~--~~~~~g~~~~lv~~~g~~V~G~ly~v~~-----~ 89 (188)
T 3cry_A 17 FLYFAYGSNLLTERIHLRNPSAAFFCVARLQDFKLDFGNSQGKT--SQTWHGGIATIFQSPGDEVWGVVWKMNK-----S 89 (188)
T ss_dssp EEEEECSGGGSHHHHHHHCTTCEEEEEEEEEEEEEEEEEETTCC--CTTTSSCEEEEEEEEEEEEEEEEEEEEG-----G
T ss_pred EEEEEEccCCCHHHHHhhCCCCceEEEEEEcCEEEEECCCCCCC--cCCCCCeeEeEEeCCCCEEEEEEEEECH-----H
Confidence 59999999999988754 2568999999999999997776 5667789999999888999999999987 6
Q ss_pred HHHHHHHHhhc---CcccceEEEEeCCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHH
Q 029821 76 AVTYLEVREKQ---YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLF 152 (187)
Q Consensus 76 ~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~ 152 (187)
.++.||+||+. .|.+..++|.+.++. .+.|+||++++. ++ ..|.++.+.+|+++.+.+|.+.||+.
T Consensus 90 ~l~~LD~~Eg~~~g~Y~r~~v~V~~~~g~----~~~a~vYv~~~~---~~----~~ps~~Yl~~i~~g~~~~gl~~~y~~ 158 (188)
T 3cry_A 90 NLNSLDEQQGVKSGMYVVIEVKVATQEGK----EITCRSYLMTNY---ES----APPSPQYKKIICMGAKENGLPLEYQE 158 (188)
T ss_dssp GHHHHHHHTTGGGTSCEEEEEEEEETTCC----EEEEEEEECSSE---EE----CCCCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEEEEEEeCCCC----EEEEEEEEecCC---CC----CCChHHHHHHHHHHHHHhCcCHHHHH
Confidence 79999999984 688888999887764 368999999876 43 34667788888888888888888877
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHh
Q 029821 153 QLEKALLELGCEDKHVIDLANTVRR 177 (187)
Q Consensus 153 ~l~~~L~~lgi~D~~l~~L~~~v~~ 177 (187)
+|.. +...|..-+.+.+|++.++.
T Consensus 159 ~L~~-~~~~g~~~p~~~~~~~~~~~ 182 (188)
T 3cry_A 159 KLKA-IEPNDYTGKVSEEIEDIIKK 182 (188)
T ss_dssp HHHT-CCCCCCCSCCCHHHHHHHHC
T ss_pred HHhc-ccccCCCCCCcHHHHHHHHh
Confidence 6643 23335555566666665543
No 2
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=99.95 E-value=3.8e-28 Score=207.13 Aligned_cols=139 Identities=19% Similarity=0.275 Sum_probs=117.4
Q ss_pred CeEEEecccCCCCCCCC--------CeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCC
Q 029821 1 MWVFGYGSLIWKAGFHF--------DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKED 72 (187)
Q Consensus 1 ~wvFgYGSL~w~~~~~~--------~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~ 72 (187)
+||||||||||++.|.. ....+|+|+||+|+|| .+..+ |.+++|+++ ++.|||++|+|++
T Consensus 128 ~~yFaYGSnm~~~~~~~~~~p~~~~~~~~~a~L~G~~l~F~-~~~~~-------~g~a~iv~~-g~~v~Gvly~i~~--- 195 (285)
T 2qik_A 128 IYYFAYGSCMDNARFQKAGVDHYFQDPVGRAVLKGYTTRFT-LKRED-------GSRADMLED-GGTTEGVLYRIPY--- 195 (285)
T ss_dssp EEEEECSGGGSSHHHHHHTCGGGSSCEEEEEEEETCEEEEE-EEETT-------EEEEEEECS-SCEEEEEEEEECG---
T ss_pred EEEEEechhcCHhhcccccCCcccceEeEEEEEeCeEEEcC-cCCCC-------CeeeeEEEC-CCEEEEEEEEECH---
Confidence 59999999999998876 2236999999999999 55544 456799998 9999999999997
Q ss_pred hHHHHHHHHHHhhc---CcccceEEEEeCCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHH
Q 029821 73 KEVAVTYLEVREKQ---YDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRD 149 (187)
Q Consensus 73 ~~~~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~e 149 (187)
+.++.||+||+. .|.+..++|.+.++. .+.|+||++++. ++ +..|.++.+.+|+++.+ +|.+.|
T Consensus 196 --~~l~~LD~~Eg~~~g~Y~r~~v~v~~~~g~----~~~a~~Yv~~~~---~~---~~~Ps~~Yl~~i~~g~~-~g~~~~ 262 (285)
T 2qik_A 196 --SALSYLYKREGVESLTYRPAFVDVEAGGRH----YKDCLTFLVLQK---EA---EIAPPQHYQIEIERGAE-LYLSPE 262 (285)
T ss_dssp --GGHHHHHHHTTTTTTSEEEEEEEEEETTEE----EEEEEEEEESSC---CC---CCCCCHHHHHHHHHHHH-HHSCHH
T ss_pred --HHHHHHHHhhCCCCCceEEEEEEEEECCCC----EEEEEEEEecCC---CC---CCCCHHHHHHHHHHHHh-cCCCHH
Confidence 679999999984 589888999887653 368999999986 53 56778999999999999 999999
Q ss_pred HHHHHHHHHHHcCCC
Q 029821 150 YLFQLEKALLELGCE 164 (187)
Q Consensus 150 Yl~~l~~~L~~lgi~ 164 (187)
|+.+|.+.++.+.-.
T Consensus 263 Y~~~l~~~~~~~~~~ 277 (285)
T 2qik_A 263 FTEKLKRHMNSLPKG 277 (285)
T ss_dssp HHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999999998643
No 3
>2jqv_A AT3G28950, AIG2 protein-like; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=4.2e-19 Score=140.02 Aligned_cols=132 Identities=16% Similarity=0.206 Sum_probs=96.4
Q ss_pred CeEEEecccCCCCCCCC-----CeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEE-eCCCCChH
Q 029821 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYK-ITKKEDKE 74 (187)
Q Consensus 1 ~wvFgYGSL~w~~~~~~-----~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~-v~~~~~~~ 74 (187)
+|||+||||||.+.++. ....+|+|+||+|.|++. ...|+++ +++++.|+|++|+ +++
T Consensus 9 ~~vFvYGSL~~~~~~~~~~~~~~~~~~a~l~Gy~~~~~~~-------~~yP~lv----~~~~~~V~G~v~~~v~~----- 72 (165)
T 2jqv_A 9 HNVFVYGSILEPAVAAVILDRTADTVPAVLHGYHRYKLKG-------LPYPCIV----SSDSGKVNGKVITGVSD----- 72 (165)
T ss_dssp EEEEESSTTSSHHHHHHHTSSCCEEEEEEEETCEECCCTT-------SSSCCEE----SCCSSEEEEEEEEEECH-----
T ss_pred eEEEEEcCCCCchhhHHHhCCCCccceEEEeCeEEEecCC-------CCCCEEE----ECCCCEEEEEEEEeCCH-----
Confidence 59999999999998754 578999999999999743 1456554 5568899999997 764
Q ss_pred HHHHHHHHHhhcCcccceEEEEeCCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHH
Q 029821 75 VAVTYLEVREKQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQL 154 (187)
Q Consensus 75 ~~l~~Ld~RE~~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~~l 154 (187)
+.|+.||.||+..|.+..++|.+.++.. ...|+||+.++.. ++...|+-.+++..+. .-.+|+..+
T Consensus 73 ~~l~~LD~~E~~~Y~R~~v~v~~~dg~~---~~~a~vYv~~~~~--~~i~~G~W~~~~~~~~---------~~~~~~~~t 138 (165)
T 2jqv_A 73 AELNNFDVIEGNDYERVTVEVVRMDNSE---KVKVETYVWVNKD--DPRMYGEWDFEEWRVV---------HAEKFVETF 138 (165)
T ss_dssp HHHHHHHHTTTTSEEEEEEEEEETTTTE---EEEEEEEEETTTT--SCCSCSCCCHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHhccCCcEEEEEEEEECCCCe---EEEEEEEEECCCc--ccccCCCcCHHHHHHH---------HHHHHHHHH
Confidence 8999999999888888888998877642 2479999997651 3333355555554332 225666666
Q ss_pred HHHHHHcC
Q 029821 155 EKALLELG 162 (187)
Q Consensus 155 ~~~L~~lg 162 (187)
...+..++
T Consensus 139 ~~~~~~~~ 146 (165)
T 2jqv_A 139 RKMLEWNK 146 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 66665554
No 4
>2g0q_A AT5G39720.1 protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=2.4e-17 Score=131.31 Aligned_cols=134 Identities=16% Similarity=0.236 Sum_probs=99.8
Q ss_pred CeEEEecccCCCCCCCC-----CeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEE-eCCCCChH
Q 029821 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYK-ITKKEDKE 74 (187)
Q Consensus 1 ~wvFgYGSL~w~~~~~~-----~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~-v~~~~~~~ 74 (187)
+|||+||||||.+.++. ....+|+|+||+|.+ .. | ...| +|++++++.|+|++|. |++
T Consensus 18 ~~vFvYGSL~~~~~~~~~l~~~~~~~~A~l~Gy~l~~-~~-----~-~~yP----~lv~~~g~~V~G~v~~~v~~----- 81 (173)
T 2g0q_A 18 HNVFVYGSFQDPDVINVMLDRTPEIVSATLPGFQRFR-LK-----G-RLYP----CIVPSEKGEVHGKVLMGVTS----- 81 (173)
T ss_dssp EEEEECSGGGCHHHHHHHTSSCCEEEEEEEETCEECC-CC-----S-SSCC----CEECCTTCEEEEEEEEEECH-----
T ss_pred EEEEEEcCCCCCccCHHHhcCCCceeEEEEcCeEEEe-eC-----C-Ceee----EEEECCCCEEEEEEEEEcCH-----
Confidence 48999999999986432 356999999999644 21 1 2244 4556678899998875 875
Q ss_pred HHHHHHHHHhhcCcccceEEEEeCCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHH
Q 029821 75 VAVTYLEVREKQYDKKAYLDLFTDPMATTPAVSGVMVYIASANKQLNSNYLGPASLEDIAKQIIQAEGPSGPNRDYLFQL 154 (187)
Q Consensus 75 ~~l~~Ld~RE~~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~~~g~~~~~~~a~~I~~a~G~sG~n~eYl~~l 154 (187)
+.|+.||.+|...|.+..++|.+.++.. .+.|+||+.++.. .+++.++.+.++-.+. ....|+...
T Consensus 82 ~~l~~LD~~Eg~~Y~R~~v~V~~~dg~~---~v~A~vYv~~~~~--~~~~~~~~~~~~W~~~---------~~~~~~~~~ 147 (173)
T 2g0q_A 82 DELENLDAVEGNEYERVTVGIVREDNSE---KMAVKTYMWINKA--DPDMFGEWNFEEWKRL---------HKKKFIETF 147 (173)
T ss_dssp HHHHHHHHHHTTTEEEEEEEEEESSSSC---EEEEEEEEESCSS--CSSSCCCCHHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCEEEEEEEEECCCCe---EEEEEEEEEcCcc--ccccCCCcCHHHHHHH---------hHHHHHHHH
Confidence 8999999999988888888998876421 3689999998761 3567777777655433 236789888
Q ss_pred HHHHHHcCCC
Q 029821 155 EKALLELGCE 164 (187)
Q Consensus 155 ~~~L~~lgi~ 164 (187)
.+.|+..+-+
T Consensus 148 ~~~m~~~~~p 157 (173)
T 2g0q_A 148 KKIMECKKKP 157 (173)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHhccCC
Confidence 8999888765
No 5
>1xhs_A Hypothetical UPF0131 protein YTFP; structure, autostructure, northeast structural genomics consortium, NESG, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.269.1.1
Probab=98.95 E-value=4.5e-09 Score=78.75 Aligned_cols=89 Identities=21% Similarity=0.319 Sum_probs=65.9
Q ss_pred CeEEEecccCCCCCCCC-----CeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCChHH
Q 029821 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEV 75 (187)
Q Consensus 1 ~wvFgYGSL~w~~~~~~-----~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~~~~ 75 (187)
|.||.|||||....... .-..+|++.||++.+. | ..|+.+ +.+ +.|+|.+|+|++ +
T Consensus 1 ~~vFvYGTL~~g~~~~~~l~~a~~~g~a~l~gy~L~~~-------g--~yP~lv----~~~-g~V~Gevy~v~~-----~ 61 (121)
T 1xhs_A 1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSL-------G--HYPGAV----PGN-GTVHGEVYRIDN-----A 61 (121)
T ss_dssp CEEEECSCTTCCCTTTHHHHTCEEEEEEEEEEEEEEEC-------S--SSEEEE----EEE-EEEEEEEEECCH-----H
T ss_pred CEEEEECCCCCcccchhhcCCCcEEEEEEEeCcEEEEe-------c--CCCeEE----ecC-CEEEEEEEEeCH-----H
Confidence 57999999998766532 2346799999998865 1 257655 333 499999999975 8
Q ss_pred HHHHHHHHhh--cCcccceEEEEeCCCCCCCceeEEEEEEEecC
Q 029821 76 AVTYLEVREK--QYDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117 (187)
Q Consensus 76 ~l~~Ld~RE~--~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~ 117 (187)
.|+.||.-|. ..|.+..+++ ++ ..|++|+.++.
T Consensus 62 ~l~~LD~~Eg~~~~Y~R~~v~~--~~-------g~a~vY~~~~~ 96 (121)
T 1xhs_A 62 TLAELDALRTRGGEYARQLIQT--PY-------GSAWMYVYQRP 96 (121)
T ss_dssp HHHHHHHHHSTTSCEEEEEEEE--TT-------EEEEEEEECSC
T ss_pred HHHHHHHhcCCCCCEEEEEEEc--CC-------CEEEEEEECCc
Confidence 9999999997 4677766653 32 26899998764
No 6
>1v30_A Hypothetical UPF0131 protein PH0828; alpha+beta, structural genomics, unknown function; HET: NHE; 1.40A {Pyrococcus horikoshii} SCOP: d.269.1.1
Probab=98.87 E-value=6e-09 Score=78.51 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=62.3
Q ss_pred CeEEEecccCCCCCCCC-----CeeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCChHH
Q 029821 1 MWVFGYGSLIWKAGFHF-----DERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEV 75 (187)
Q Consensus 1 ~wvFgYGSL~w~~~~~~-----~~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~~~~ 75 (187)
+.||.|||||....... .-..+|.+.||++. . . . .|+.+ +.++ .|+|.+|+|++ +
T Consensus 8 ~~vFVYGTL~~g~~n~~~l~~a~~~g~a~l~gy~L~-~-g-------~-yP~lv----~~~g-~V~Gev~~v~~-----~ 67 (124)
T 1v30_A 8 VRIAVYGTLRKGKPLHWYLKGAKFLGEDWIEGYQLY-F-E-------Y-LPYAV----KGKG-KLKVEVYEVDK-----E 67 (124)
T ss_dssp EEEEECSTTSTTSTTGGGGTTSEEEEEEEEEEEEEE-E-S-------S-SEEEE----EEEE-EEEEEEEEECH-----H
T ss_pred cEEEEECCCCCchHhHHhcCCCcEEEEEEEeeEEEE-E-C-------C-CCEEE----ecCC-EEEEEEEEECH-----H
Confidence 36999999998876542 22467999999887 2 1 1 56655 3333 49999999976 8
Q ss_pred HHHHHHHHh-hcCcccceEEEEeCCCCCCCceeEEEEEEEecC
Q 029821 76 AVTYLEVRE-KQYDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117 (187)
Q Consensus 76 ~l~~Ld~RE-~~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~ 117 (187)
.|+.||..| ...|.+.. |.+.++ .|++|+..+.
T Consensus 68 ~l~~LD~~E~~~~Y~R~~--V~~~~g-------~A~vY~~~~~ 101 (124)
T 1v30_A 68 TFERINEIEIGTGYRLVE--VSTKFG-------KAFLWEWGSK 101 (124)
T ss_dssp HHHHHTTCGGGGGEEEEE--ECCTTS-------CEEEEEECSC
T ss_pred HHHHhhhccCCCCeEEEE--EEcCCC-------EEEEEEeCCc
Confidence 999999999 44566654 333433 3899998654
No 7
>3jud_A AIG2-like domain-containing protein 1; cyclotransferase, gamma-glutamylamine cyclotransferase, gamma-glutamyl-epsilon-lysine; 0.98A {Homo sapiens} SCOP: d.269.1.1 PDB: 3jub_A 3juc_A
Probab=98.87 E-value=5.5e-09 Score=81.43 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=67.1
Q ss_pred eEEEecccCCCCCCC-CC---eeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCChHHHH
Q 029821 2 WVFGYGSLIWKAGFH-FD---ERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEVAV 77 (187)
Q Consensus 2 wvFgYGSL~w~~~~~-~~---~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~~~~~l 77 (187)
.||-||+|+-...-+ .- ....|.+.|-.+..-...-...|....| ++...+.+|+.|+|.+|+|++ +.|
T Consensus 3 ~vFVYGTL~~G~~Nh~~l~~~~~~~A~~~G~~~t~~~Ypl~~~g~~~~P--~l~~~p~~g~~V~G~ly~v~~-----~~l 75 (153)
T 3jud_A 3 LVFVYGTLKRGQPNHRVLRDGAHGSAAFRARGRTLEPYPLVIAGEHNIP--WLLHLPGSGRLVEGEVYAVDE-----RML 75 (153)
T ss_dssp EEEECSTTSTTSTTGGGGTCGGGCCEEEEEEEEESSCBCEEEETTTTEE--EEBSCTTSSBCCEEEEEEECH-----HHH
T ss_pred EEEEeCCCCCCCcChHHHhcCcCCCeEEEEEEEeCCCccEEEecCCCCc--eEEecCCCCCEEEEEEEEECH-----HHH
Confidence 489999999764422 11 1234666665432100000001111122 222333345689999999986 899
Q ss_pred HHHHHHhh--cCcccceEEEEeCCCC-------CCCceeEEEEEEEecCCCCCCCCC
Q 029821 78 TYLEVREK--QYDKKAYLDLFTDPMA-------TTPAVSGVMVYIASANKQLNSNYL 125 (187)
Q Consensus 78 ~~Ld~RE~--~~y~~~~v~v~~~~~~-------~~~~~~~alvYva~~~~~~n~~~~ 125 (187)
+.||+.|. ..|.+..++|.+.+.. .....+.|+||+.+.. ++.+.
T Consensus 76 ~~LD~~Eg~~~~Y~R~~v~V~~~~~~~~~~~~~~~g~~v~A~vYv~~~~---~~~~~ 129 (153)
T 3jud_A 76 RFLDDFQSCPALYQRTVLRVQLLEDRAPGAEEPPAPTAVQCFVYSRATF---PPEWA 129 (153)
T ss_dssp HHHHHHTTTTTSCEEEEEEEEEEC------CCSCCCCEEEEEEEEBCCC---CGGGG
T ss_pred HHHHHhcCCCCceEEEEEEEEeeccccccccccCCCCEEEEEEEEcCCC---Ccccc
Confidence 99999998 4788888888775200 0112478999999876 55544
No 8
>1vkb_A Hypothetical protein; gamma-glutamyl cyclotransferase-like fold, structural genomi center for structural genomics, JCSG, protein structure INI PSI; 1.90A {Mus musculus} SCOP: d.269.1.1 PDB: 2kl2_A
Probab=98.62 E-value=7.1e-08 Score=75.64 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=66.2
Q ss_pred eEEEecccCCCCCC-CC---------CeeeeE-EEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCC
Q 029821 2 WVFGYGSLIWKAGF-HF---------DERVVG-FIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKK 70 (187)
Q Consensus 2 wvFgYGSL~w~~~~-~~---------~~~~~a-~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~ 70 (187)
.||-||+|+=...- .. .-...+ ++.||.-.|.-. ... ..+++++++++.|+|.+|+|++
T Consensus 15 ~vFVYGTLk~G~~Nh~~l~~~r~~~A~~~G~~~tl~~YpL~~~g~-------~~~--p~~~i~p~~g~~V~Gevy~v~~- 84 (161)
T 1vkb_A 15 HIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVESFPLVIAGE-------HNI--PWLLYLPGKGHCVTGEIYEVDE- 84 (161)
T ss_dssp EEEECSTTSTTSTTTHHHHCGGGCCEEEEEEEEESSCBCEEEETT-------TTE--EEEESCTTSSBCCEEEEEEECH-
T ss_pred EEEEcCCCCCCCcChHHHhhCcCCCceEEEEEeecCCceEEEecC-------CCc--ceeEeecCCCCEEEEEEEEECH-
Confidence 58999999944321 11 011223 455676666522 111 2367777777799999999986
Q ss_pred CChHHHHHHHHHHhh--cCcccceEEEEe-------CCCCCCCceeEEEEEEEecC
Q 029821 71 EDKEVAVTYLEVREK--QYDKKAYLDLFT-------DPMATTPAVSGVMVYIASAN 117 (187)
Q Consensus 71 ~~~~~~l~~Ld~RE~--~~y~~~~v~v~~-------~~~~~~~~~~~alvYva~~~ 117 (187)
+.|+.||.-|. +.|.+..++|.+ +++. .+.|++|+.+..
T Consensus 85 ----~~L~~LD~~Eg~p~~Y~R~~v~V~~~~~~~~~~~g~----~v~A~vYv~~~~ 132 (161)
T 1vkb_A 85 ----QMLRFLDDFEDCPSMYQRTALQVQVLEWEGDGDPGD----SVQCFVYTTATY 132 (161)
T ss_dssp ----HHHHHHHHHTTTTTSCEEEEEEEEEEEEC----CCS----EEEEEEEEESCC
T ss_pred ----HHHHHHHHhcCCCCceEEEEEEEEecccccccCCCC----EEEEEEEEcCCC
Confidence 89999999997 368887788876 3443 368999998743
No 9
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=98.11 E-value=1.4e-05 Score=67.42 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=61.5
Q ss_pred eEEEecccCCCCCCCC----C--eeeeEEEeCeEEEEEeccCCCCCCCCCCceeeEeeeCCCCcEEEEEEEeCCCCChHH
Q 029821 2 WVFGYGSLIWKAGFHF----D--ERVVGFIKGYRRVFHQGSTDHRGTPKFPGRTVTLEPAEGEVCWGAAYKITKKEDKEV 75 (187)
Q Consensus 2 wvFgYGSL~w~~~~~~----~--~~~~a~l~G~~R~f~~~s~~~RGt~~~PG~vl~l~~~~~~~~~Gv~y~v~~~~~~~~ 75 (187)
.||-|||||-....+. . ...+++++| |-+... ..||++. .+++++.|.|-+|+|++ +
T Consensus 4 ~vFVYGTL~~g~~n~~~l~~~~~~~~~~~~~g--~L~~~g--------~~P~lv~--~~~~~~~V~Gev~~v~~-----~ 66 (285)
T 2qik_A 4 LLFVYGTLRKHEKNHHLLAQSACINEQARTKG--SLFAAK--------EGPTVVF--NDEDEGYIYGEVYEADE-----L 66 (285)
T ss_dssp EEEECSTTSTTSTTGGGGTTCEEEEEEEEEES--EEEEC----------CEEEEC--CTTCCSEEEEEEEEECH-----H
T ss_pred EEEEECCCCCCCcChHHhCCCeEeeeeEEEEE--EEEEcC--------CCCeEEE--ccCCCCEEEEEEEEcCH-----H
Confidence 5899999997665432 1 235788886 444322 1366552 22246789999999974 3
Q ss_pred HHHHHHHHhh--cCcccceEEEEeCCCCCCCceeEEEEEEEecC
Q 029821 76 AVTYLEVREK--QYDKKAYLDLFTDPMATTPAVSGVMVYIASAN 117 (187)
Q Consensus 76 ~l~~Ld~RE~--~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~ 117 (187)
.||.-|. +.|.+..++|.++++. +.|++|+.++.
T Consensus 67 ---~LD~~E~~~~~Y~R~~v~v~~~~g~-----~~a~vY~~~~~ 102 (285)
T 2qik_A 67 ---CIHKLDQFFQGYHKQTVFVETDVGI-----KIALIYFMNKD 102 (285)
T ss_dssp ---HHHHHHHHSTTCEEEEEEEEETTEE-----EEEEEEECC--
T ss_pred ---HhHHhcCCCCceeEEEEEEEcCCCE-----EEEEEEEeccc
Confidence 8999997 5788888888876652 58999997654
No 10
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=83.20 E-value=0.86 Score=35.45 Aligned_cols=31 Identities=16% Similarity=0.049 Sum_probs=28.7
Q ss_pred CCCCcHHHHHHHHHHHHHcCCCChhHHHHHH
Q 029821 143 PSGPNRDYLFQLEKALLELGCEDKHVIDLAN 173 (187)
Q Consensus 143 ~sG~n~eYl~~l~~~L~~lgi~D~~l~~L~~ 173 (187)
+..|+.+||..+.+++++.|++++|+..|++
T Consensus 132 ~~~ps~~Yl~~i~~g~~~~gl~~~y~~~L~~ 162 (188)
T 3cry_A 132 SAPPSPQYKKIICMGAKENGLPLEYQEKLKA 162 (188)
T ss_dssp ECCCCHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence 3679999999999999999999999999975
No 11
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=53.05 E-value=23 Score=30.05 Aligned_cols=53 Identities=9% Similarity=0.001 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHcCCCChhHHHHHHHHHhHh
Q 029821 127 PASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELGCEDKHVIDLANTVRRIL 179 (187)
Q Consensus 127 ~~~~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~lgi~D~~l~~L~~~v~~~~ 179 (187)
..+.++++++|.++--..+.+.+=|....+.|+++|+.+..|..|..+.-+++
T Consensus 89 Gls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL 141 (335)
T 4fp9_B 89 GLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIF 141 (335)
T ss_dssp TCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHCGGGG
T ss_pred CCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhh
Confidence 37899999999999999999999999999999999999999888866554443
No 12
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.41 E-value=18 Score=22.54 Aligned_cols=38 Identities=11% Similarity=0.228 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHHHHHcCCCChh--HHHH-------HHHHHhHhcchhh
Q 029821 146 PNRDYLFQLEKALLELGCEDKH--VIDL-------ANTVRRILSEEDS 184 (187)
Q Consensus 146 ~n~eYl~~l~~~L~~lgi~D~~--l~~L-------~~~v~~~~~~~~~ 184 (187)
|-..|=. -.+.|++||..|.+ +.+| +++|.-++...++
T Consensus 5 p~~~~~~-~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 5 SSGHFQV-QLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp CCCSSHH-HHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred hhhhHHH-HHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 3344533 34889999998864 6776 3445555544443
No 13
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=40.34 E-value=39 Score=25.14 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=37.9
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHc----CCCChhHHHHHHHHHhHhcc
Q 029821 130 LEDIAKQIIQAEGPSGPNRDYLFQLEKALLEL----GCEDKHVIDLANTVRRILSE 181 (187)
Q Consensus 130 ~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~l----gi~D~~l~~L~~~v~~~~~~ 181 (187)
.+++|+.||...|.. =.|=-+++.+.||+. ++. |.+..|.+.+.+-+..
T Consensus 47 seevA~~lA~~EgIe--LTe~HWeVI~flR~fY~e~~~s-P~iR~L~K~~~~~~g~ 99 (132)
T 1yx3_A 47 VPGVADVMAKQDNLE--LTEEHWDIINFLREYYEEYQIA-PAVRVLTKAVGKKLGK 99 (132)
T ss_dssp CHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHcCCC--cCHHHHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHhCc
Confidence 489999999999994 445567788888875 666 8899998887665543
No 14
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=36.25 E-value=51 Score=23.84 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=41.4
Q ss_pred CCCCCCCCC--HHHHHHHHHhc-----cCCCCCcHHHHHHHHHHHHHc----CCCChhHHHHHHHHHhHhcch
Q 029821 121 NSNYLGPAS--LEDIAKQIIQA-----EGPSGPNRDYLFQLEKALLEL----GCEDKHVIDLANTVRRILSEE 182 (187)
Q Consensus 121 n~~~~g~~~--~~~~a~~I~~a-----~G~sG~n~eYl~~l~~~L~~l----gi~D~~l~~L~~~v~~~~~~~ 182 (187)
..-|+-..+ .+++|+.||+. .|.. =.|=-+.+.+.||+. |+. |.+..|.+.+..-+..+
T Consensus 15 ~~GfL~d~~dW~eevA~~lA~~~~~~~egIe--LTe~HW~VI~flR~~Y~e~~~~-P~iR~l~K~~~~~~g~~ 84 (115)
T 1sau_A 15 EDGFLQDWEEWDEEVAEALAKDTRFSPQPIE--LTEEHWKIIRYLRDYFIKYGVA-PPVRMLVKHCKKEVRPD 84 (115)
T ss_dssp TTSCBSSGGGCCHHHHHHHHTCTTSCSSCCC--CCHHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHTCTT
T ss_pred CCcCcCChHhCCHHHHHHHHhcccCCcCCce--ECHHHHHHHHHHHHHHHHHCCC-CcHHHHHHHHHHHhCcc
Confidence 334444333 38999999999 8883 445567788888875 666 88999988886655433
No 15
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=33.83 E-value=48 Score=21.77 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHcC-CCCh
Q 029821 127 PASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELG-CEDK 166 (187)
Q Consensus 127 ~~~~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~lg-i~D~ 166 (187)
|..+.+..+..|...|.| -|.+=+..|.+.|++-| +.|+
T Consensus 27 P~eL~~~L~~~A~~~grS-lNaeIv~~Le~sl~~e~~l~~~ 66 (69)
T 3qoq_A 27 PEGMREQIAEVARSHHRS-MNSEIIARLEQSLLQEGALQDN 66 (69)
T ss_dssp CTTHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCcccc
Confidence 457889999999999999 99999999999999877 4443
No 16
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=30.84 E-value=99 Score=27.62 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=36.8
Q ss_pred HHHHHHhccCCCCCcHHHHHH-----HHHHHHHcCCCChhHHHHHHHHHhHhc
Q 029821 133 IAKQIIQAEGPSGPNRDYLFQ-----LEKALLELGCEDKHVIDLANTVRRILS 180 (187)
Q Consensus 133 ~a~~I~~a~G~sG~n~eYl~~-----l~~~L~~lgi~D~~l~~L~~~v~~~~~ 180 (187)
++-.|+.+.=||-..+-||+| .+.+.+.||+.++-+.+|+..|.+.+.
T Consensus 277 ~~f~I~DGv~PsN~GrGYVLRRilRRavr~g~~Lg~~~~fl~~Lv~~v~~~m~ 329 (465)
T 1yfs_A 277 ITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMK 329 (465)
T ss_dssp HHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHT
T ss_pred hhhhhccccccCCCCcchHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 334466667778888899886 456777889999999999988877664
No 17
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=29.48 E-value=69 Score=25.49 Aligned_cols=45 Identities=22% Similarity=0.032 Sum_probs=25.5
Q ss_pred CHHHHHHHHHhccCCCCCcHHHHHHHHHHH-HHcCCCChhHHHHHH
Q 029821 129 SLEDIAKQIIQAEGPSGPNRDYLFQLEKAL-LELGCEDKHVIDLAN 173 (187)
Q Consensus 129 ~~~~~a~~I~~a~G~sG~n~eYl~~l~~~L-~~lgi~D~~l~~L~~ 173 (187)
+.++++++|.+.-...+.+.|=+....+.| +++|+++..+..+..
T Consensus 89 s~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~ 134 (270)
T 3m66_A 89 SKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVV 134 (270)
T ss_dssp CHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 455566666655555555555555566666 356666655544433
No 18
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=26.49 E-value=1.3e+02 Score=28.45 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=36.3
Q ss_pred HHHHhccCCCCCcHHHHHH-----HHHHHHHcCCCChhHHHHHHHHHhHhcc
Q 029821 135 KQIIQAEGPSGPNRDYLFQ-----LEKALLELGCEDKHVIDLANTVRRILSE 181 (187)
Q Consensus 135 ~~I~~a~G~sG~n~eYl~~-----l~~~L~~lgi~D~~l~~L~~~v~~~~~~ 181 (187)
-.|+-+.=||-..+-||+| .+.+.+.||+.++ |.+|...|.+.+..
T Consensus 349 f~i~DGv~PsN~grGYvlRrilRRa~r~~~~lg~~~~-l~~lv~~~~~~m~~ 399 (739)
T 2ztg_A 349 FMLGDGLVPSNAGAGYLARLMIRRSLRLAEELELGLD-LYDLVEMHKKILGF 399 (739)
T ss_dssp HHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHTTCSSC-HHHHHHHHHHHHCC
T ss_pred HHhccCcccCCCCcchHHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHH
Confidence 3455667788888999886 4667778899999 99999999887754
No 19
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=26.36 E-value=1.1e+02 Score=24.22 Aligned_cols=43 Identities=7% Similarity=-0.004 Sum_probs=22.6
Q ss_pred CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHcCCCChhHHHH
Q 029821 129 SLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELGCEDKHVIDL 171 (187)
Q Consensus 129 ~~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~lgi~D~~l~~L 171 (187)
+.++++++|.+.-...+.+.|=+....+.|+++|+.+..+..+
T Consensus 54 ~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~Gls~~~i~~~ 96 (270)
T 3m66_A 54 EDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQM 96 (270)
T ss_dssp CGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4445555555555555555555555555555555555544444
No 20
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=25.35 E-value=1.4e+02 Score=28.24 Aligned_cols=45 Identities=22% Similarity=0.184 Sum_probs=35.7
Q ss_pred HHHHhccCCCCCcHHHHHH-----HHHHHHHcCCCChhHHHHHHHHHhHhc
Q 029821 135 KQIIQAEGPSGPNRDYLFQ-----LEKALLELGCEDKHVIDLANTVRRILS 180 (187)
Q Consensus 135 ~~I~~a~G~sG~n~eYl~~-----l~~~L~~lgi~D~~l~~L~~~v~~~~~ 180 (187)
-.|+-+.=||-..+-||+| .+.+.+.||+.++ |.+|...|.+.+.
T Consensus 350 f~i~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~-l~~lv~~~~~~m~ 399 (752)
T 2zze_A 350 FMLADGVVPSNVXAGYLARLLIRKSIRHLRELGLEVP-LSEIVALHIXELH 399 (752)
T ss_dssp HHHHTTCCCSSSHHHHHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHT
T ss_pred hhcccCCCcCccchhHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHhh
Confidence 3455667788888999885 5667778999999 9999998887764
No 21
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=24.44 E-value=84 Score=21.62 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=34.2
Q ss_pred CCCCCCCCCHHHHHHHHH----hccCCCCCcHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 029821 121 NSNYLGPASLEDIAKQII----QAEGPSGPNRDYLFQLEKALLELGCEDKHVIDLANTV 175 (187)
Q Consensus 121 n~~~~g~~~~~~~a~~I~----~a~G~sG~n~eYl~~l~~~L~~lgi~D~~l~~L~~~v 175 (187)
-|.|.|..+++++=.+|. +.. ||+.+=+..+++.|.++ +.+..|..+...+
T Consensus 2 ~P~~~g~t~l~dvr~~l~~Wv~~~~---~P~~~DV~~l~~yL~~l-v~~~~lek~~~vl 56 (97)
T 4fjo_A 2 APNLAGAVEFSDVKTLLKEWITTIS---DPMEEDILQVVRYCTDL-IEEKDLEKLDLVI 56 (97)
T ss_dssp CCCBTTBCSHHHHHHHHHHHHHHCS---SCCHHHHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred CCcccCCcCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHH-hhccCHHHHHHHH
Confidence 588999999887766654 343 56666666677777776 3555666665544
No 22
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=23.87 E-value=65 Score=21.42 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=22.5
Q ss_pred HHHHHHcCCCChhHHHHHHHHHhHhcchhhhC
Q 029821 155 EKALLELGCEDKHVIDLANTVRRILSEEDSAS 186 (187)
Q Consensus 155 ~~~L~~lgi~D~~l~~L~~~v~~~~~~~~~~~ 186 (187)
.+.|++|||+.-.+-++-+.+++...++.+.|
T Consensus 41 ~~~Lr~LGi~eGDIIrVmk~l~~k~~r~~~~~ 72 (72)
T 3idw_A 41 NSMLRTLGLREGDIVRVMKHLDKKFGRENIAS 72 (72)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHhCcCcCCC
Confidence 35789999998888888888888777766544
No 23
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=20.77 E-value=1.1e+02 Score=27.18 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=33.5
Q ss_pred HHHhccCCCCCcHHHHHH-----HHHHHHHcCCCChhHHHHHHHHHhHhc
Q 029821 136 QIIQAEGPSGPNRDYLFQ-----LEKALLELGCEDKHVIDLANTVRRILS 180 (187)
Q Consensus 136 ~I~~a~G~sG~n~eYl~~-----l~~~L~~lgi~D~~l~~L~~~v~~~~~ 180 (187)
.|+.+.=||-..+-|++| .+.+.+.||+.++-+.+|+..|.+.+.
T Consensus 293 ~iaDGv~PsNeGrGYVLRRilRRAvr~g~~Lg~~~~fl~~Lv~~v~~~m~ 342 (441)
T 3hy0_A 293 LIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMG 342 (441)
T ss_dssp HHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHTCCSCCGGGGHHHHHHHHG
T ss_pred HHhcCcccCCCCcchhHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Confidence 345556677778889887 456667789999988888887766554
No 24
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=20.16 E-value=1.2e+02 Score=25.23 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHcCCCChhHHHHHH
Q 029821 128 ASLEDIAKQIIQAEGPSGPNRDYLFQLEKALLELGCEDKHVIDLAN 173 (187)
Q Consensus 128 ~~~~~~a~~I~~a~G~sG~n~eYl~~l~~~L~~lgi~D~~l~~L~~ 173 (187)
.+.++++++|.+.-.....+.+-|....+.|+.+|+.|+.+..+..
T Consensus 63 ~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~ 108 (343)
T 3mva_O 63 ASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILE 108 (343)
T ss_dssp CCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4555566666555444444455555555566666666655555443
Done!