Query 029822
Match_columns 187
No_of_seqs 126 out of 1351
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 98.8 1E-08 3.5E-13 90.0 7.2 120 33-158 108-227 (524)
2 4aps_A DI-OR tripeptide H+ sym 98.3 6.7E-07 2.3E-11 77.6 4.8 93 33-132 107-199 (491)
3 1pw4_A Glycerol-3-phosphate tr 97.6 8.6E-05 2.9E-09 63.0 5.8 83 34-125 119-202 (451)
4 3o7q_A L-fucose-proton symport 97.5 0.00013 4.6E-09 61.7 6.5 87 33-128 116-228 (438)
5 2gfp_A EMRD, multidrug resista 97.1 7.2E-05 2.4E-09 62.4 -0.4 83 33-124 87-169 (375)
6 1pw4_A Glycerol-3-phosphate tr 96.9 0.0017 5.8E-08 54.9 6.7 87 33-128 345-432 (451)
7 4aps_A DI-OR tripeptide H+ sym 96.3 0.0044 1.5E-07 53.3 5.1 90 33-132 385-474 (491)
8 2cfq_A Lactose permease; trans 95.4 0.0075 2.6E-07 51.4 2.9 82 37-127 315-397 (417)
9 2xut_A Proton/peptide symporte 95.1 0.0089 3E-07 51.9 2.3 92 33-133 404-506 (524)
10 3o7q_A L-fucose-proton symport 95.0 0.042 1.5E-06 46.1 6.3 77 38-125 351-428 (438)
11 2gfp_A EMRD, multidrug resista 93.4 0.032 1.1E-06 46.1 2.2 77 33-119 290-366 (375)
12 4gc0_A D-xylose-proton symport 92.5 0.15 5E-06 43.5 5.2 83 32-123 124-214 (491)
13 4gc0_A D-xylose-proton symport 89.5 0.86 2.9E-05 38.7 7.1 82 51-146 387-474 (491)
14 2cfq_A Lactose permease; trans 26.6 66 0.0022 26.5 4.3 74 33-117 8-81 (417)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.77 E-value=1e-08 Score=90.00 Aligned_cols=120 Identities=23% Similarity=0.459 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822 33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF 112 (187)
Q Consensus 33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF 112 (187)
+...++++..+.++|.|...|+..++++|.+++++. .+....|++++.+.++|..+++.+..++.+..||+..|
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r------~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK------SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT------THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 456788888999999999999999999999986542 34577899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCceeecCCCCChhHHHHHHHHHHHHhcC
Q 029822 113 GIPAAIMLLSALCFFLASPFYVKSKANTSLLSGLIQVLVASYKNRH 158 (187)
Q Consensus 113 ~i~~v~~~val~~f~~g~~~y~~~~p~gs~l~~~~~v~~~a~~~~~ 158 (187)
.+.++..++++++++...+.++..+|++++..+..+.+..++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (524)
T 2xut_A 182 GIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV 227 (524)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCCCCC--------------------C
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhh
Confidence 9999988888877776666665555665555555666666666654
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.25 E-value=6.7e-07 Score=77.60 Aligned_cols=93 Identities=16% Similarity=0.301 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822 33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF 112 (187)
Q Consensus 33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF 112 (187)
+...++++..+.++|.|+..|+..++.+|.+++++ +.+...+++++.+.++|..+++.+..++.++.||++.|
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f 179 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD-------RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAF 179 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT-------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc-------ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34667888889999999999999999999998654 36788999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCc
Q 029822 113 GIPAAIMLLSALCFFLASPF 132 (187)
Q Consensus 113 ~i~~v~~~val~~f~~g~~~ 132 (187)
.+.++..++++++++...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 180 SLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCcc
Confidence 99988887777776554333
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.57 E-value=8.6e-05 Score=63.02 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC-cceeh
Q 029822 34 LMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG-WKVGF 112 (187)
Q Consensus 34 ~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g-w~~gF 112 (187)
...++++..+.++|.|...+...++.+|.+++ ++|...+.++..+.++|.++++.+..++-+..| |++.|
T Consensus 119 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~---------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f 189 (451)
T 1pw4_A 119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ---------KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 189 (451)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT---------THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCT
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHCCc---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 45677888899999999999999999999974 357888999999999999999999988778888 99999
Q ss_pred hhhHHHHHHHHHH
Q 029822 113 GIPAAIMLLSALC 125 (187)
Q Consensus 113 ~i~~v~~~val~~ 125 (187)
.+.++..++..++
T Consensus 190 ~~~~~~~~~~~~~ 202 (451)
T 1pw4_A 190 YMPAFCAILVALF 202 (451)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988765554443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.54 E-value=0.00013 Score=61.68 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhhe-eccC----
Q 029822 33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQ-DNLG---- 107 (187)
Q Consensus 33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~-~~~g---- 107 (187)
+.+.++++..+.++|.|...+...++++|.++++ +|...++++..+.++|..+++.+..++. +..+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 186 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES---------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ 186 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST---------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCH
T ss_pred cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4677888999999999999999999999999753 4566789999999999999999988887 5554
Q ss_pred ---------------------cceehhhhHHHHHHHHHHHHh
Q 029822 108 ---------------------WKVGFGIPAAIMLLSALCFFL 128 (187)
Q Consensus 108 ---------------------w~~gF~i~~v~~~val~~f~~ 128 (187)
|++.|.+.++..++..++++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 187 DVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899997777655444444333
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.07 E-value=7.2e-05 Score=62.42 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822 33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF 112 (187)
Q Consensus 33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF 112 (187)
+...++++..+.++|.|...+...++..|.++++ ++...+.++..+.++|..+++.+..++.+..||+..|
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 157 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT---------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACY 157 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHH
Confidence 4566777788889999999999999999999753 3455788888999999999999999999999999999
Q ss_pred hhhHHHHHHHHH
Q 029822 113 GIPAAIMLLSAL 124 (187)
Q Consensus 113 ~i~~v~~~val~ 124 (187)
.+.++..++..+
T Consensus 158 ~~~~~~~~~~~~ 169 (375)
T 2gfp_A 158 LFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988876655554
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.90 E-value=0.0017 Score=54.89 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhH-hHHHHhhhhhhheeccCccee
Q 029822 33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSA-SSMVAVTLIVYIQDNLGWKVG 111 (187)
Q Consensus 33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~inv-G~li~~~~~~~i~~~~gw~~g 111 (187)
....+.+.+.+++++.++..+....+..+.+++ +.+...+.++....++ |..+++.+.+++.+..||...
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 415 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPK---------KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 415 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT---------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 345667777788888888888888888888874 3578899999999999 999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHh
Q 029822 112 FGIPAAIMLLSALCFFL 128 (187)
Q Consensus 112 F~i~~v~~~val~~f~~ 128 (187)
|.+.++..+++.+.++.
T Consensus 416 ~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 416 FMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998887777766554
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.27 E-value=0.0044 Score=53.34 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822 33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF 112 (187)
Q Consensus 33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF 112 (187)
....+.++..+.++|.+..-|...++..+.++++. +.....+++...++|..+++.+.+++.+. ++...|
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~ 454 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---------NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYF 454 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC---------SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHH
Confidence 45667778888999999999999999999987643 34566778889999999999998888764 677788
Q ss_pred hhhHHHHHHHHHHHHhcCCc
Q 029822 113 GIPAAIMLLSALCFFLASPF 132 (187)
Q Consensus 113 ~i~~v~~~val~~f~~g~~~ 132 (187)
.+.++..+++.++++...+.
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 455 SYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88887776666665554443
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.41 E-value=0.0075 Score=51.44 Aligned_cols=82 Identities=9% Similarity=0.049 Sum_probs=57.9
Q ss_pred HHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHH-HHHHhhHhHHHHhhhhhhheeccCcceehhhh
Q 029822 37 LYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSW-YYVSVSASSMVAVTLIVYIQDNLGWKVGFGIP 115 (187)
Q Consensus 37 ~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~-~Y~~invG~li~~~~~~~i~~~~gw~~gF~i~ 115 (187)
+.+...+.+++.+..-+....+..|.+++ +.+...+.+ +..+.++|+.+++.+.+++.++.||...|.+.
T Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~---------~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 315 VVILKTLHMFEVPFLLVGCFKYITSQFEV---------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHSCH---------HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 33344444555555555556677777763 355666777 45677899999999999998888999999988
Q ss_pred HHHHHHHHHHHH
Q 029822 116 AAIMLLSALCFF 127 (187)
Q Consensus 116 ~v~~~val~~f~ 127 (187)
++..+++.++.+
T Consensus 386 ~~~~l~~~~~~~ 397 (417)
T 2cfq_A 386 GLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 887777766543
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=95.06 E-value=0.0089 Score=51.93 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheecc--Cc--
Q 029822 33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNL--GW-- 108 (187)
Q Consensus 33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~--gw-- 108 (187)
....+.++..+.++|.+..-+...++..+..+++ .+.....+++...++|..+++.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~---------~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~ 474 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA---------MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIV 474 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT---------CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH---------HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 3455666778888999999999999999988753 3456778888899999999999999887732 23
Q ss_pred -------ceehhhhHHHHHHHHHHHHhcCCce
Q 029822 109 -------KVGFGIPAAIMLLSALCFFLASPFY 133 (187)
Q Consensus 109 -------~~gF~i~~v~~~val~~f~~g~~~y 133 (187)
...|.+.++..+++.++++...+.+
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 475 QTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2236666666666666554444433
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=94.98 E-value=0.042 Score=46.05 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=56.4
Q ss_pred HHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccC-cceehhhhH
Q 029822 38 YLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLG-WKVGFGIPA 116 (187)
Q Consensus 38 ~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~g-w~~gF~i~~ 116 (187)
.+.+.+++++.+..-|...++..+.+.++ +.....+.. ..++|..+++.+.+++.+..| |+.+|.+++
T Consensus 351 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 419 (438)
T 3o7q_A 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQD----------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA 419 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSSCGGG----------HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc----------ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34556778888888899888888887732 222223333 456999999999999999998 999999887
Q ss_pred HHHHHHHHH
Q 029822 117 AIMLLSALC 125 (187)
Q Consensus 117 v~~~val~~ 125 (187)
++.++.++.
T Consensus 420 ~~~~~~~~~ 428 (438)
T 3o7q_A 420 LCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766555443
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=93.41 E-value=0.032 Score=46.06 Aligned_cols=77 Identities=12% Similarity=-0.003 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822 33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF 112 (187)
Q Consensus 33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF 112 (187)
+.+.++++..+.++|.|...+...+...|.++ +.+.+.+..+....++|..+++.+..++.++.+|...|
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p----------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 359 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP----------FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGL 359 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH----------HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC----------cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 45566677888899999999999999998875 24677888888999999999999999998888888888
Q ss_pred hhhHHHH
Q 029822 113 GIPAAIM 119 (187)
Q Consensus 113 ~i~~v~~ 119 (187)
.+.++++
T Consensus 360 ~~~~~~~ 366 (375)
T 2gfp_A 360 LMTLMGL 366 (375)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765544
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=92.54 E-value=0.15 Score=43.54 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheec------
Q 029822 32 SQLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDN------ 105 (187)
Q Consensus 32 ~~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~------ 105 (187)
.....++++..+.++|.|+.-+....+.+|...+ +.|.....++.+++.+|.+++..+...+...
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~---------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 194 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA---------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWL 194 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG---------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH---------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccc
Confidence 3577899999999999999999999999998764 4567777788888888888887665554332
Q ss_pred --cCcceehhhhHHHHHHHH
Q 029822 106 --LGWKVGFGIPAAIMLLSA 123 (187)
Q Consensus 106 --~gw~~gF~i~~v~~~val 123 (187)
.+|++.+.+..+..++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 195 NTDGWRYMFASECIPALLFL 214 (491)
T ss_dssp TTTHHHHHHHTTHHHHHHHH
T ss_pred cchhhHHHhhhhhhhhhhhh
Confidence 356766766666544433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=89.49 E-value=0.86 Score=38.67 Aligned_cols=82 Identities=10% Similarity=0.044 Sum_probs=54.8
Q ss_pred cccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheec------cCcceehhhhHHHHHHHHH
Q 029822 51 IRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDN------LGWKVGFGIPAAIMLLSAL 124 (187)
Q Consensus 51 ~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~------~gw~~gF~i~~v~~~val~ 124 (187)
.-|....+.+|.|.. +.|.....+.+...++|++++..+.+++.+. .++...|.+-++..+++.+
T Consensus 387 ~~~~~~~~~~E~fPt---------~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i 457 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPN---------AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 457 (491)
T ss_dssp TTHHHHHHHHHSSCT---------TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 345666788899875 3567788888889999999998888887653 4566667666655555544
Q ss_pred HHHhcCCceeecCCCCChhHHH
Q 029822 125 CFFLASPFYVKSKANTSLLSGL 146 (187)
Q Consensus 125 ~f~~g~~~y~~~~p~gs~l~~~ 146 (187)
..++ .-+|.+|.++.++
T Consensus 458 ~~~~-----~~PETkg~tLeei 474 (491)
T 4gc0_A 458 FMWK-----FVPETKGKTLEEL 474 (491)
T ss_dssp HHHH-----HCCCCTTCCHHHH
T ss_pred HHHh-----eecCCCCCCHHHH
Confidence 3221 1235666666664
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=26.59 E-value=66 Score=26.54 Aligned_cols=74 Identities=12% Similarity=0.033 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHhhcccccccchhhhhhhccCCCCCcccchhHHHHHHHHHHHHHhhHhHHHHhhhhhhheeccCcceeh
Q 029822 33 QLMLLYLAFGLMSLGGGGIRSSSLAFGAEQLEKGDGIKSKSESALKSYFSWYYVSVSASSMVAVTLIVYIQDNLGWKVGF 112 (187)
Q Consensus 33 ~~~~~~~aL~liavG~Gg~kp~~~~~~adqf~~~~~~~~~~~~~~~~~F~~~Y~~invG~li~~~~~~~i~~~~gw~~gF 112 (187)
+...+.....+..++.+..-|-.+.+..+++.-+.. +. .+......++..++..+.+++.|.+|-+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~-------~~----g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l 76 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKS-------DT----GIIFAAISLFSLLFQPLFGLLSDKLGLRKYL 76 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTT-------TS----HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-------HH----HHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 444444444555566677778887777766553321 11 3333445666777777788888988877665
Q ss_pred hhhHH
Q 029822 113 GIPAA 117 (187)
Q Consensus 113 ~i~~v 117 (187)
.+..+
T Consensus 77 ~~~~~ 81 (417)
T 2cfq_A 77 LWIIT 81 (417)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
Done!