BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029824
         (187 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E2Z|A Chain A, Solution Nmr Structure Of Yeast Tim15, Co-Chaperone Of
           Mitochondrial Hsp70
          Length = 100

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPG-SIEDFLA 158
           + + FTCK C TRS  T  +++YEKG V+  C  C   HLIADHL  F +   ++E  + 
Sbjct: 10  MMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLMK 69

Query: 159 ARGEEVKKGSVDTLNLTLEDLAGREVLKD 187
           A GE+V   S D  +L  ED+   + LKD
Sbjct: 70  ANGEQV---SQDVGDLEFEDIP--DSLKD 93


>pdb|3RPD|A Chain A, The Structure Of A B12-Independent Methionine Synthase
           From Shewanella Sp. W3-18-1 In Complex With
           Selenomethionine.
 pdb|3RPD|B Chain B, The Structure Of A B12-Independent Methionine Synthase
           From Shewanella Sp. W3-18-1 In Complex With
           Selenomethionine
          Length = 357

 Score = 31.6 bits (70), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 146 WFGEPGSIEDFLAARGEEVKKGSVDTLNLTLED--LAGREVLKD 187
           W  EP ++      +GEE+  G  D L L+L+D  LAG +++ D
Sbjct: 31  WLAEPETLWSPWKLQGEELITGKHDALRLSLQDQQLAGIDIVSD 74


>pdb|2W8D|A Chain A, Distinct And Essential Morphogenic Functions For Wall- And
           Lipo-Teichoic Acids In Bacillus Subtilis
 pdb|2W8D|B Chain B, Distinct And Essential Morphogenic Functions For Wall- And
           Lipo-Teichoic Acids In Bacillus Subtilis
          Length = 436

 Score = 27.3 bits (59), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 40  HFGISEYHRRGLQTLINSNSVTDADQEQ 67
           H+GISE H +    ++  + +TD D  Q
Sbjct: 259 HYGISENHNKAXAKVLGKDEITDYDNAQ 286


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.128    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,743,712
Number of Sequences: 62578
Number of extensions: 168072
Number of successful extensions: 438
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 5
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)