Query 029824
Match_columns 187
No_of_seqs 118 out of 220
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 06:17:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e2z_A TIM15; protein import, 100.0 4E-41 1.4E-45 257.4 4.9 85 95-182 5-90 (100)
2 1wge_A Hypothetical protein 26 93.6 0.036 1.2E-06 40.7 2.4 35 101-138 28-62 (83)
3 2jr7_A DPH3 homolog; DESR1, CS 93.5 0.029 1E-06 41.8 1.9 37 101-140 21-57 (89)
4 1yop_A KTI11P; zinc finger, me 93.0 0.046 1.6E-06 40.1 2.3 35 101-138 21-55 (83)
5 2l6l_A DNAJ homolog subfamily 90.3 0.14 4.8E-06 39.3 2.4 36 101-140 110-145 (155)
6 1qyp_A RNA polymerase II; tran 73.8 4.4 0.00015 26.5 4.0 35 103-137 15-52 (57)
7 1ltl_A DNA replication initiat 70.3 2.8 9.4E-05 35.1 3.0 46 86-137 120-165 (279)
8 1k81_A EIF-2-beta, probable tr 69.7 3.1 0.0001 25.7 2.4 32 105-140 2-33 (36)
9 1gh9_A 8.3 kDa protein (gene M 66.3 6.7 0.00023 27.7 3.9 47 100-156 1-47 (71)
10 3po3_S Transcription elongatio 65.6 2 6.9E-05 34.6 1.2 36 102-137 136-174 (178)
11 1pqv_S STP-alpha, transcriptio 63.3 3.4 0.00012 35.7 2.2 36 102-137 267-305 (309)
12 3h0g_I DNA-directed RNA polyme 61.1 3.3 0.00011 30.8 1.6 34 104-137 73-109 (113)
13 1tfi_A Transcriptional elongat 60.4 4.6 0.00016 26.5 2.0 34 104-137 10-46 (50)
14 1wee_A PHD finger family prote 59.5 4.9 0.00017 27.3 2.1 24 104-137 17-40 (72)
15 1vd4_A Transcription initiatio 58.4 3.7 0.00013 25.8 1.2 43 103-145 14-56 (62)
16 3cc2_Z 50S ribosomal protein L 51.7 5.2 0.00018 31.1 1.3 30 101-137 58-87 (116)
17 1vq8_Z 50S ribosomal protein L 47.5 11 0.00036 27.3 2.3 29 102-137 26-54 (83)
18 1wii_A Hypothetical UPF0222 pr 46.7 11 0.00037 27.5 2.2 47 99-150 19-67 (85)
19 2vpb_A Hpygo1, pygopus homolog 45.1 9.9 0.00034 25.9 1.8 26 103-137 8-34 (65)
20 2k16_A Transcription initiatio 44.8 13 0.00044 25.1 2.3 27 103-139 18-45 (75)
21 1twf_L ABC10-alpha, DNA-direct 43.8 5.2 0.00018 28.1 0.2 32 100-139 25-56 (70)
22 2vl6_A SSO MCM N-TER, minichro 43.8 6.5 0.00022 32.4 0.8 49 86-137 127-177 (268)
23 1twf_I B12.6, DNA-directed RNA 42.3 14 0.00049 27.7 2.4 35 103-137 72-109 (122)
24 3lqh_A Histone-lysine N-methyl 42.0 10 0.00036 30.6 1.7 25 105-138 4-31 (183)
25 3p2a_A Thioredoxin 2, putative 41.8 20 0.00067 25.4 3.0 31 101-136 3-33 (148)
26 1ffk_W Ribosomal protein L37AE 40.1 15 0.00051 26.2 2.1 31 100-137 24-54 (73)
27 3qt1_I DNA-directed RNA polyme 39.9 6.1 0.00021 30.6 0.0 35 103-137 92-129 (133)
28 2kvh_A Zinc finger and BTB dom 37.8 12 0.00042 18.6 1.0 10 103-112 3-12 (27)
29 1wjv_A Cell growth regulating 37.2 13 0.00043 27.2 1.3 41 98-138 5-47 (79)
30 1yc5_A NAD-dependent deacetyla 36.4 10 0.00036 31.0 0.9 47 101-150 119-165 (246)
31 3glr_A NAD-dependent deacetyla 36.1 17 0.00059 31.1 2.3 46 101-149 137-182 (285)
32 2ri7_A Nucleosome-remodeling f 35.7 14 0.00049 28.2 1.5 26 104-139 9-35 (174)
33 1rik_A E6APC1 peptide; E6-bind 35.2 14 0.00049 18.3 1.0 9 104-112 3-11 (29)
34 2kvf_A Zinc finger and BTB dom 34.7 15 0.00052 18.2 1.1 9 104-112 4-12 (28)
35 1ma3_A SIR2-AF2, transcription 34.6 19 0.00064 29.7 2.2 48 101-150 121-168 (253)
36 2gmg_A Hypothetical protein PF 33.8 6.2 0.00021 30.1 -0.8 29 100-137 64-93 (105)
37 1m2k_A Silent information regu 33.7 18 0.00062 29.7 1.9 44 101-150 119-162 (249)
38 1we9_A PHD finger family prote 33.1 15 0.00053 24.0 1.1 26 105-139 8-34 (64)
39 2lvu_A Zinc finger and BTB dom 39.3 9.1 0.00031 18.9 0.0 10 103-112 2-11 (26)
40 1znf_A 31ST zinc finger from X 33.0 12 0.00042 18.3 0.5 9 104-112 2-10 (27)
41 3j20_W 30S ribosomal protein S 32.0 27 0.00093 24.4 2.3 16 127-142 14-29 (63)
42 2d74_B Translation initiation 31.7 12 0.00042 29.7 0.5 33 104-140 105-137 (148)
43 2kgg_A Histone demethylase jar 31.5 18 0.0006 23.1 1.2 19 121-139 11-31 (52)
44 2kvg_A Zinc finger and BTB dom 30.8 14 0.00049 18.6 0.6 9 104-112 4-12 (27)
45 1nee_A EIF-2-beta, probable tr 30.8 13 0.00044 29.1 0.5 32 105-140 104-135 (138)
46 2elx_A Zinc finger protein 406 30.8 19 0.00064 18.8 1.1 10 103-112 7-16 (35)
47 2qkd_A Zinc finger protein ZPR 30.7 29 0.00098 31.5 2.9 31 97-127 243-274 (404)
48 1zso_A Hypothetical protein; s 30.5 37 0.0013 27.2 3.2 20 97-116 64-83 (164)
49 2xzm_6 RPS27E; ribosome, trans 29.9 30 0.001 25.4 2.3 19 92-111 22-40 (81)
50 1qxf_A GR2, 30S ribosomal prot 29.7 31 0.0011 24.4 2.3 19 126-144 5-23 (66)
51 1srk_A Zinc finger protein ZFP 29.7 20 0.00069 18.8 1.1 10 103-112 7-16 (35)
52 2kwq_A Protein MCM10 homolog; 29.1 49 0.0017 24.5 3.4 44 100-144 12-63 (92)
53 1x0t_A Ribonuclease P protein 28.9 35 0.0012 25.6 2.7 14 126-139 92-105 (120)
54 1ard_A Yeast transcription fac 28.6 15 0.00053 18.1 0.4 9 104-112 3-11 (29)
55 4a17_Y RPL37A, 60S ribosomal p 28.3 18 0.0006 27.6 0.9 30 101-137 34-63 (103)
56 2fiy_A Protein FDHE homolog; F 27.9 92 0.0031 27.0 5.5 49 124-174 249-305 (309)
57 2m0f_A Zinc finger and BTB dom 27.8 23 0.0008 17.3 1.1 9 104-112 3-11 (29)
58 2m0d_A Zinc finger and BTB dom 27.1 23 0.0008 17.3 1.0 10 103-112 3-12 (30)
59 2elq_A Zinc finger protein 406 27.1 23 0.00079 18.8 1.0 10 103-112 9-18 (36)
60 2els_A Zinc finger protein 406 26.6 23 0.0008 18.7 1.0 10 103-112 9-18 (36)
61 1klr_A Zinc finger Y-chromosom 26.5 17 0.00059 17.9 0.4 9 104-112 3-11 (30)
62 2elv_A Zinc finger protein 406 26.5 25 0.00084 18.6 1.1 10 103-112 9-18 (36)
63 3j21_i 50S ribosomal protein L 26.3 18 0.00063 26.4 0.7 30 101-137 33-62 (83)
64 3sgi_A DNA ligase; HET: DNA AM 26.3 14 0.00048 35.2 0.0 73 100-183 412-497 (615)
65 3iz5_m 60S ribosomal protein L 26.1 19 0.00064 26.8 0.7 30 101-137 34-63 (92)
66 4e2x_A TCAB9; kijanose, tetron 25.7 34 0.0012 28.7 2.3 39 101-140 10-65 (416)
67 1zso_A Hypothetical protein; s 25.6 27 0.00091 28.0 1.5 49 91-140 25-82 (164)
68 3u5c_b RP61, YS20, 40S ribosom 25.6 41 0.0014 24.7 2.4 15 127-141 33-47 (82)
69 3na7_A HP0958; flagellar bioge 25.6 17 0.00058 29.9 0.4 33 105-139 200-233 (256)
70 3r8s_0 50S ribosomal protein L 25.2 32 0.0011 23.0 1.7 21 127-148 26-49 (56)
71 2elp_A Zinc finger protein 406 25.2 26 0.00089 18.6 1.0 10 103-112 9-18 (37)
72 2k2d_A Ring finger and CHY zin 25.1 19 0.00066 25.5 0.5 32 99-137 33-64 (79)
73 2elt_A Zinc finger protein 406 25.0 27 0.00091 18.3 1.0 10 103-112 9-18 (36)
74 1q14_A HST2 protein; histone d 24.8 26 0.0009 30.9 1.5 47 101-150 142-191 (361)
75 1njq_A Superman protein; zinc- 24.7 26 0.00091 19.0 1.0 10 103-112 6-15 (39)
76 2elm_A Zinc finger protein 406 24.6 27 0.00092 18.9 1.0 10 103-112 9-18 (37)
77 3pur_A Lysine-specific demethy 24.6 32 0.0011 32.4 2.1 18 120-137 50-67 (528)
78 1q1a_A HST2 protein; ternary c 24.5 23 0.0008 29.7 1.1 47 101-150 134-183 (289)
79 2m0e_A Zinc finger and BTB dom 24.4 20 0.00069 17.4 0.4 9 104-112 3-11 (29)
80 2epv_A Zinc finger protein 268 24.3 28 0.00095 19.5 1.1 10 103-112 12-21 (44)
81 3iz6_X 40S ribosomal protein S 24.3 43 0.0015 24.7 2.3 18 126-143 34-51 (86)
82 3jyw_9 60S ribosomal protein L 24.2 17 0.00057 26.0 0.1 30 101-137 24-53 (72)
83 2drp_A Protein (tramtrack DNA- 23.7 19 0.00065 21.8 0.2 35 103-137 10-49 (66)
84 2eod_A TNF receptor-associated 23.6 31 0.0011 21.2 1.3 35 103-137 10-46 (66)
85 3izc_m 60S ribosomal protein R 23.5 22 0.00075 26.5 0.6 30 101-137 34-63 (92)
86 2k3r_A Ribonuclease P protein 23.3 46 0.0016 25.2 2.4 15 126-140 87-101 (123)
87 3flo_B DNA polymerase alpha ca 23.3 30 0.001 28.5 1.5 37 100-136 19-57 (206)
88 3dzy_D Peroxisome proliferator 23.3 7.9 0.00027 34.2 -2.2 26 102-135 49-74 (419)
89 2kdx_A HYPA, hydrogenase/ureas 23.2 14 0.00047 27.2 -0.5 28 101-137 71-99 (119)
90 2xb1_A Pygopus homolog 2, B-ce 23.2 35 0.0012 24.9 1.7 26 103-137 3-29 (105)
91 2lvt_A Zinc finger and BTB dom 28.9 17 0.00059 18.1 0.0 10 103-112 2-11 (29)
92 1bbo_A Human enhancer-binding 23.1 13 0.00045 21.8 -0.6 34 104-137 2-38 (57)
93 1paa_A Yeast transcription fac 23.1 20 0.00067 17.9 0.2 9 104-112 3-11 (30)
94 1v5n_A PDI-like hypothetical p 22.9 49 0.0017 23.5 2.3 29 96-135 36-68 (89)
95 2kfq_A FP1; protein, de novo p 22.9 18 0.00063 19.0 0.1 9 104-112 3-11 (32)
96 3uk3_C Zinc finger protein 217 22.8 8.4 0.00029 22.7 -1.5 35 103-137 4-41 (57)
97 1p7a_A BF3, BKLF, kruppel-like 22.6 23 0.00079 18.8 0.5 10 103-112 11-20 (37)
98 2elo_A Zinc finger protein 406 22.4 18 0.00062 19.2 -0.0 10 103-112 9-18 (37)
99 2e9h_A EIF-5, eukaryotic trans 22.3 58 0.002 26.1 2.9 38 105-144 105-142 (157)
100 1wep_A PHF8; structural genomi 22.0 37 0.0013 23.2 1.5 16 122-137 21-36 (79)
101 3nrs_A Dihydrofolate:folylpoly 21.8 30 0.001 30.2 1.2 25 141-167 174-198 (437)
102 1x5w_A Zinc finger protein 64, 21.7 21 0.00071 22.1 0.1 35 103-137 9-46 (70)
103 2elr_A Zinc finger protein 406 21.6 25 0.00085 18.5 0.4 10 103-112 9-18 (36)
104 1rim_A E6APC2 peptide; E6-bind 21.3 25 0.00087 18.7 0.4 9 104-112 3-11 (33)
105 2g2k_A EIF-5, eukaryotic trans 21.1 51 0.0017 26.8 2.4 39 105-145 98-136 (170)
106 3iuf_A Zinc finger protein UBI 21.1 34 0.0011 20.0 1.0 10 103-112 7-16 (48)
107 2lvr_A Zinc finger and BTB dom 26.4 20 0.0007 17.7 0.0 10 103-112 3-12 (30)
108 2em9_A Zinc finger protein 224 20.9 19 0.00065 20.3 -0.2 10 103-112 12-21 (46)
109 2en2_A B-cell lymphoma 6 prote 20.9 35 0.0012 18.7 1.0 10 103-112 11-20 (42)
110 2wtz_A UDP-N-acetylmuramoyl-L- 20.7 24 0.00081 31.7 0.4 23 141-166 246-268 (535)
111 3cw2_K Translation initiation 20.3 14 0.00047 29.0 -1.1 32 105-140 105-136 (139)
112 2eoy_A Zinc finger protein 473 20.3 37 0.0013 19.1 1.1 10 103-112 12-21 (46)
113 2emj_A Zinc finger protein 28 20.3 37 0.0012 19.1 1.0 10 103-112 12-21 (46)
114 2ytp_A Zinc finger protein 484 20.3 38 0.0013 19.1 1.1 10 103-112 12-21 (46)
No 1
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-41 Score=257.45 Aligned_cols=85 Identities=38% Similarity=0.694 Sum_probs=78.2
Q ss_pred CCCCceEEEEecCCCCCccccccChhhccCceEEEEcCCCCcceeeeccccCcCC-CCCHHHHHHHcCCceeeecccccC
Q 029824 95 SARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE-PGSIEDFLAARGEEVKKGSVDTLN 173 (187)
Q Consensus 95 ~pR~~l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnLgwF~e-~~nIEdil~~kGe~V~kg~~~~~~ 173 (187)
.|+++|+|+|||++|++||+|+|||+||++||||||||||+|+||||||||||++ +.||||||++|||.|+++. .+
T Consensus 5 ~~~~~~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~HlIaDnLgwF~d~~~~IEdil~~kGe~V~~~~---~d 81 (100)
T 2e2z_A 5 VDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLMKANGEQVSQDV---GD 81 (100)
T ss_dssp SCCCEEEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEESCCSSCSGGGSCCCHHHHHHHHCCCCSSSS---CE
T ss_pred CCCCcEEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccceEeehhhhhhccCCCCHHHHHHHcCCEeeecC---CC
Confidence 4688999999999999999999999999999999999999999999999999988 6899999999999999853 35
Q ss_pred cccccccCc
Q 029824 174 LTLEDLAGR 182 (187)
Q Consensus 174 lt~eDl~g~ 182 (187)
+++|||++.
T Consensus 82 ~~~ed~pe~ 90 (100)
T 2e2z_A 82 LEFEDIPDS 90 (100)
T ss_dssp EEESSCCHH
T ss_pred ccHhhChHH
Confidence 788888764
No 2
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=93.60 E-value=0.036 Score=40.70 Aligned_cols=35 Identities=26% Similarity=0.604 Sum_probs=31.1
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcce
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLH 138 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~H 138 (187)
...|.|. ||-+ -.|++.-.+.|.++|+|++|.-+=
T Consensus 28 ~y~y~Cr-CGd~--F~it~edL~~ge~iv~C~sCSL~I 62 (83)
T 1wge_A 28 TYFYPCP-CGDN--FAITKEDLENGEDVATCPSCSLII 62 (83)
T ss_dssp EEEECCS-SSSC--EEEEHHHHHTTCCEEECTTTCCEE
T ss_pred EEEEeCC-CCCE--EEECHHHHhCCCEEEECCCCceEE
Confidence 5789997 9988 689999999999999999998753
No 3
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=93.51 E-value=0.029 Score=41.80 Aligned_cols=37 Identities=24% Similarity=0.589 Sum_probs=31.7
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcceee
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLI 140 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLI 140 (187)
...|.|. ||.+ -.|++...+.|.++|+|++|.-+=.|
T Consensus 21 ~y~ypCr-CGd~--F~IteedLe~ge~iv~C~sCSL~IkV 57 (89)
T 2jr7_A 21 TYFYPCP-CGDN--FSITKEDLENGEDVATCPSCSLIIKV 57 (89)
T ss_dssp EEEEECT-TSSE--EEEEHHHHHHTCCEEECTTTCCEEEE
T ss_pred EEEEcCC-CCCE--EEECHHHHhCCCEEEECCCCccEEEE
Confidence 5789997 9988 68999999999999999999976433
No 4
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=93.04 E-value=0.046 Score=40.13 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=30.2
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcce
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLH 138 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~H 138 (187)
...|.|. || ..-.|++.-.+.|-++|+|++|.-+=
T Consensus 21 ~y~ypCr-CG--d~F~it~edL~~ge~iv~C~sCSL~I 55 (83)
T 1yop_A 21 MFTYPCP-CG--DRFQIYLDDMFEGEKVAVCPSCSLMI 55 (83)
T ss_dssp EEEEEET-TT--EEEEEEHHHHHTTCCEEECSSSCCEE
T ss_pred EEEEeCC-CC--CeEEECHHHHhCCCEEEECCCCccEE
Confidence 5789997 99 55689999999999999999999763
No 5
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=90.28 E-value=0.14 Score=39.29 Aligned_cols=36 Identities=14% Similarity=0.527 Sum_probs=28.5
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcceee
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLI 140 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLI 140 (187)
...|.|. ||.+ -.|++.-.+.| ++|+|++|..+-.|
T Consensus 110 ~f~~~Cr-CG~~--f~i~~~~l~~~-~~v~C~sCSl~~~v 145 (155)
T 2l6l_A 110 SFYLSCR-CGGK--YSVSKDEAEEV-SLISCDTCSLIIEL 145 (155)
T ss_dssp EEEEECS-SSCE--EEEETTHHHHC-CEEECSSSSCEEEE
T ss_pred EEEEcCC-CCCe--EEecHHHhCCC-CEEECCCCceEEEE
Confidence 5678896 9976 56777777777 88999999987654
No 6
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=73.78 E-value=4.4 Score=26.50 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=26.1
Q ss_pred EEecCCCCCccccccCh---hhccCceEEEEcCCCCcc
Q 029824 103 IFTCKVCETRSVKTACR---ESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 103 ~FTC~~C~tRs~k~iSk---~AY~~GvViVqC~gC~n~ 137 (187)
.+.|..|+.+...-+.. .|-+--+++..|..|...
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 67899999976554433 355666899999999865
No 7
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=70.30 E-value=2.8 Score=35.10 Aligned_cols=46 Identities=15% Similarity=0.391 Sum_probs=27.9
Q ss_pred eeeccCCccCCCCceEEEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824 86 LSATSNLKTSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 86 ~s~~s~~k~~pR~~l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~ 137 (187)
+.+++.+++. -....|+|..|++.....+....| +.-..||+|.+.
T Consensus 120 V~r~S~V~p~---~~~~~f~C~~C~~~~~v~~~~~~~---~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 120 VRKTDEIRPR---IVKAVFECRGCMRHHAVTQSTNMI---TEPSLCSECGGR 165 (279)
T ss_dssp EEEECCCEEE---EEEEEEEETTTCCEEEEECSSSSC---CCCSCCTTTCCC
T ss_pred EEEecceEEE---EEEEEEEcCCCCCEEEEEecCCcc---cCCCcCCCCCCC
Confidence 3345555422 257889999999764333332222 234589999986
No 8
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=69.70 E-value=3.1 Score=25.73 Aligned_cols=32 Identities=25% Similarity=0.548 Sum_probs=25.4
Q ss_pred ecCCCCCccccccChhhccCceEEEEcCCCCcceee
Q 029824 105 TCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLI 140 (187)
Q Consensus 105 TC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLI 140 (187)
.|..|+...+..+- ++++.+.+|..|....-|
T Consensus 2 lC~~C~~peT~l~~----~~~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 2 ICRECGKPDTKIIK----EGRVHLLKCMACGAIRPI 33 (36)
T ss_dssp CCSSSCSCEEEEEE----ETTEEEEEEETTTEEEEE
T ss_pred CCcCCCCCCcEEEE----eCCcEEEEhhcCCCcccc
Confidence 58889888877664 469999999999887765
No 9
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=66.34 E-value=6.7 Score=27.71 Aligned_cols=47 Identities=23% Similarity=0.545 Sum_probs=34.5
Q ss_pred eEEEEecCCCCCccccccChhhccCceEEEEcCCCCcceeeeccccCcCCCCCHHHH
Q 029824 100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDF 156 (187)
Q Consensus 100 l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnLgwF~e~~nIEdi 156 (187)
|.++|-|. |+..+ +.+ .|.--.+|| |...|-+. .|-.|.+-.+.++.
T Consensus 1 mY~vv~C~-C~~~~---~~~----~~~kT~~C~-CG~~~~~~-k~rif~~~~d~~eA 47 (71)
T 1gh9_A 1 MYIIFRCD-CGRAL---YSR----EGAKTRKCV-CGRTVNVK-DRRIFGRADDFEEA 47 (71)
T ss_dssp CEEEEEET-TSCCE---EEE----TTCSEEEET-TTEEEECC-SSSCBSCCSSHHHH
T ss_pred CeEEEECC-CCCEE---EEc----CCCcEEECC-CCCeeeec-eEEEEEecCCHHHH
Confidence 47899999 99873 332 366678999 99998764 67788776666554
No 10
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=65.64 E-value=2 Score=34.58 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=29.0
Q ss_pred EEEecCCCCCccccccC---hhhccCceEEEEcCCCCcc
Q 029824 102 MIFTCKVCETRSVKTAC---RESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 102 l~FTC~~C~tRs~k~iS---k~AY~~GvViVqC~gC~n~ 137 (187)
..++|..|+.+.+..+- |.|-+--++++.|..|..+
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~ 174 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNR 174 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCE
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCe
Confidence 35799999998876554 4577788999999999876
No 11
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=63.25 E-value=3.4 Score=35.67 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=29.0
Q ss_pred EEEecCCCCCccccccC---hhhccCceEEEEcCCCCcc
Q 029824 102 MIFTCKVCETRSVKTAC---RESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 102 l~FTC~~C~tRs~k~iS---k~AY~~GvViVqC~gC~n~ 137 (187)
-.|+|..|+.+....+- |.|=+--++|+.|-.|.++
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~ 305 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNR 305 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCc
Confidence 36899999999875543 5576777999999999875
No 12
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=61.15 E-value=3.3 Score=30.84 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=28.6
Q ss_pred EecCCCCCccccccC---hhhccCceEEEEcCCCCcc
Q 029824 104 FTCKVCETRSVKTAC---RESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 104 FTC~~C~tRs~k~iS---k~AY~~GvViVqC~gC~n~ 137 (187)
++|..|+.+.+.-+- |.|-+.-+++.+|..|..+
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~ 109 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFA 109 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCE
Confidence 789999998876664 5688889999999999865
No 13
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=60.38 E-value=4.6 Score=26.49 Aligned_cols=34 Identities=26% Similarity=0.573 Sum_probs=21.3
Q ss_pred EecCCCCCcccccc---ChhhccCceEEEEcCCCCcc
Q 029824 104 FTCKVCETRSVKTA---CRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 104 FTC~~C~tRs~k~i---Sk~AY~~GvViVqC~gC~n~ 137 (187)
++|..|+.+.+.-+ .|.|-+-=+++..|..|..+
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred cCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 46777777665433 34455666777777777654
No 14
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.47 E-value=4.9 Score=27.31 Aligned_cols=24 Identities=29% Similarity=0.776 Sum_probs=18.6
Q ss_pred EecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824 104 FTCKVCETRSVKTACRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 104 FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~ 137 (187)
..| +|+.. |..|...|+|..|..|
T Consensus 17 ~~C-~C~~~---------~~~g~~mI~Cd~C~~W 40 (72)
T 1wee_A 17 VDC-KCGTK---------DDDGERMLACDGCGVW 40 (72)
T ss_dssp ECC-TTCCC---------SCCSSCEEECSSSCEE
T ss_pred eEe-eCCCc---------cCCCCcEEECCCCCCc
Confidence 467 68764 4568888999999877
No 15
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=58.42 E-value=3.7 Score=25.79 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=28.8
Q ss_pred EEecCCCCCccccccChhhccCceEEEEcCCCCcceeeecccc
Q 029824 103 IFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLG 145 (187)
Q Consensus 103 ~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnLg 145 (187)
.|.|..|+..-...-.-...|.|----+|+-|.......++++
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~~~ 56 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAM 56 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTTCS
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCcccc
Confidence 5999999975322111114566666678999998877777665
No 16
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=51.75 E-value=5.2 Score=31.09 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=22.2
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~ 137 (187)
...|||..|+..+.+... +-|-+|+.|...
T Consensus 58 ~akytCPfCGk~~vKR~a-------vGIW~C~~Cgk~ 87 (116)
T 3cc2_Z 58 NEDHACPNCGEDRVDRQG-------TGIWQCSYCDYK 87 (116)
T ss_dssp HSCEECSSSCCEEEEEEE-------TTEEEETTTCCE
T ss_pred ccCCcCCCCCCceeEecC-------ceeEECCCCCCE
Confidence 347999999986555443 237899999875
No 17
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=47.49 E-value=11 Score=27.29 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=21.2
Q ss_pred EEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824 102 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 102 l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~ 137 (187)
..|+|.-||....+... +=|.+|+.|...
T Consensus 26 ~~y~Cp~CG~~~v~r~a-------tGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQG-------TGIWQCSYCDYK 54 (83)
T ss_dssp SCEECSSSCCEEEEEEE-------TTEEEETTTCCE
T ss_pred ccCcCCCCCCcceeccC-------CCeEECCCCCCE
Confidence 47999999986444332 338899999875
No 18
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=46.66 E-value=11 Score=27.50 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=33.0
Q ss_pred ceEEEEecCCCCCccc--cccChhhccCceEEEEcCCCCcceeeeccccCcCCC
Q 029824 99 DLAMIFTCKVCETRSV--KTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEP 150 (187)
Q Consensus 99 ~l~l~FTC~~C~tRs~--k~iSk~AY~~GvViVqC~gC~n~HLIADnLgwF~e~ 150 (187)
.|--.|+|-.|++-.+ -.|.| ..|+-.+.|.-|...+-. ...-..|+
T Consensus 19 ~L~t~F~CPfCnh~~sV~vkidk---~~~~g~l~C~~Cg~~~~~--~i~~L~ep 67 (85)
T 1wii_A 19 TLETQFTCPFCNHEKSCDVKMDR---ARNTGVISCTVCLEEFQT--PITYLSEP 67 (85)
T ss_dssp CCSSCCCCTTTCCSSCEEEEEET---TTTEEEEEESSSCCEEEE--ECCSSCCT
T ss_pred CCCCeEcCCCCCCCCeEEEEEEc---cCCEEEEEcccCCCeEEe--ccCccCcc
Confidence 4556899999999842 23333 478999999999988766 33334443
No 19
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=45.07 E-value=9.9 Score=25.86 Aligned_cols=26 Identities=15% Similarity=0.649 Sum_probs=19.9
Q ss_pred EEecCCCCCccccccChhhccCceEEEEcC-CCCcc
Q 029824 103 IFTCKVCETRSVKTACRESYEKGVVVARCG-GCNNL 137 (187)
Q Consensus 103 ~FTC~~C~tRs~k~iSk~AY~~GvViVqC~-gC~n~ 137 (187)
.+.|.+|+.. |..+.-.|+|. +|+.|
T Consensus 8 ~~~C~~C~~p---------~~~~~~mI~CD~~C~~W 34 (65)
T 2vpb_A 8 VYPCGICTNE---------VNDDQDAILCEASCQKW 34 (65)
T ss_dssp -CBCTTTCSB---------CCTTSCEEEBTTTTCCE
T ss_pred cCcCccCCCc---------cCCCCCeEecccCcccc
Confidence 5678888765 55677889999 99854
No 20
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=44.84 E-value=13 Score=25.11 Aligned_cols=27 Identities=26% Similarity=0.778 Sum_probs=20.0
Q ss_pred EEecCCCCCccccccChhhccCceEEEEcCCCCcc-ee
Q 029824 103 IFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL-HL 139 (187)
Q Consensus 103 ~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~-HL 139 (187)
...|.+|+... .|-.+|+|++|..+ |+
T Consensus 18 ~~~C~~C~~~~----------~~~~mi~CD~C~~wfH~ 45 (75)
T 2k16_A 18 IWICPGCNKPD----------DGSPMIGCDDCDDWYHW 45 (75)
T ss_dssp EECBTTTTBCC----------SSCCEEECSSSSSEEEH
T ss_pred CcCCCCCCCCC----------CCCCEEEcCCCCccccc
Confidence 35599998652 36678999999887 54
No 21
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=43.80 E-value=5.2 Score=28.14 Aligned_cols=32 Identities=19% Similarity=0.570 Sum_probs=22.0
Q ss_pred eEEEEecCCCCCccccccChhhccCceEEEEcCCCCccee
Q 029824 100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHL 139 (187)
Q Consensus 100 l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HL 139 (187)
..+.|.|..|+...... .... |+|+.|..+=|
T Consensus 25 ~~v~Y~C~~CG~~~e~~------~~d~--irCp~CG~RIL 56 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS------RTDA--VRCKDCGHRIL 56 (70)
T ss_dssp CCCCEECSSSCCEECCC------TTST--TCCSSSCCCCC
T ss_pred ceEEEECCCCCCcceeC------CCCC--ccCCCCCceEe
Confidence 45789999999985433 1122 48999998643
No 22
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=43.77 E-value=6.5 Score=32.41 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=27.8
Q ss_pred eeeccCCccCCCCceEEEEec--CCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824 86 LSATSNLKTSARHDLAMIFTC--KVCETRSVKTACRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 86 ~s~~s~~k~~pR~~l~l~FTC--~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~ 137 (187)
+.+++.+++. -....|+| ..|++.....+..+.+.+=+--..||+|.+.
T Consensus 127 V~r~S~V~p~---~~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~~ 177 (268)
T 2vl6_A 127 LVKVTPVKER---IYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 177 (268)
T ss_dssp EEEECCCEEE---EEECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCB
T ss_pred EEEcCCcceE---eEEEEEECCCCCCCCEEeeeecccCCCcccCCccCCCCCCC
Confidence 3345555422 25778999 9999764333111212222334679999985
No 23
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=42.34 E-value=14 Score=27.67 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=28.3
Q ss_pred EEecCCCCCcccccc---ChhhccCceEEEEcCCCCcc
Q 029824 103 IFTCKVCETRSVKTA---CRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 103 ~FTC~~C~tRs~k~i---Sk~AY~~GvViVqC~gC~n~ 137 (187)
.++|..|+.+-+.-+ .|.|-+--+++..|..|..+
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~ 109 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHI 109 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCE
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCE
Confidence 478999999876555 46688888999999999765
No 24
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=41.98 E-value=10 Score=30.62 Aligned_cols=25 Identities=24% Similarity=0.853 Sum_probs=18.4
Q ss_pred ecCCCCCccccccChhhccCc---eEEEEcCCCCcce
Q 029824 105 TCKVCETRSVKTACRESYEKG---VVVARCGGCNNLH 138 (187)
Q Consensus 105 TC~~C~tRs~k~iSk~AY~~G---vViVqC~gC~n~H 138 (187)
.|.+|+. .|..+ .-+|+|++|+.|.
T Consensus 4 ~CpiC~k---------~Y~~~~~~~~MIqCd~C~~W~ 31 (183)
T 3lqh_A 4 FCPLCDK---------CYDDDDYESKMMQCGKCDRWV 31 (183)
T ss_dssp BCTTTCC---------BCTTCCTTCCEEECTTTCCEE
T ss_pred cCCCCcC---------ccCCcccCCCeEECCCCCccc
Confidence 4888864 45554 4699999999873
No 25
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=41.82 E-value=20 Score=25.39 Aligned_cols=31 Identities=29% Similarity=0.705 Sum_probs=19.5
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCc
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNN 136 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n 136 (187)
.|.++|..|+..+ .+....+..+. .|..|..
T Consensus 3 ~~~~~c~~c~~~n--~~p~~~~~~~~---~~~~~~~ 33 (148)
T 3p2a_A 3 AMNTVCTACMATN--RLPEERIDDGA---KCGRCGH 33 (148)
T ss_dssp EEEEECTTTCCEE--EEESSCSCSCC---BCTTTCC
T ss_pred ccEEECccccccc--CCCCcccccCC---cchhcCC
Confidence 3588999999875 34444444433 3777765
No 26
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=40.15 E-value=15 Score=26.19 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=23.1
Q ss_pred eEEEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824 100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 100 l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~ 137 (187)
+.-.|||..|+.-..+... +=|-+|.+|...
T Consensus 24 q~~ky~C~fCgk~~vkR~a-------~GIW~C~~C~~~ 54 (73)
T 1ffk_W 24 HKKKYKCPVCGFPKLKRAS-------TSIWVCGHCGYK 54 (73)
T ss_pred cccCccCCCCCCceeEEEE-------eEEEECCCCCcE
Confidence 3457999999987655543 667899999764
No 27
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=39.87 E-value=6.1 Score=30.63 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=0.0
Q ss_pred EEecCCCCCcccccc---ChhhccCceEEEEcCCCCcc
Q 029824 103 IFTCKVCETRSVKTA---CRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 103 ~FTC~~C~tRs~k~i---Sk~AY~~GvViVqC~gC~n~ 137 (187)
..+|..|+.+.+.-+ .|.|-+.-+++.+|..|..+
T Consensus 92 ~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~ 129 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHR 129 (133)
T ss_dssp --------------------------------------
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCE
Confidence 479999999887666 55688889999999999865
No 28
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=37.75 E-value=12 Score=18.57 Aligned_cols=10 Identities=40% Similarity=1.165 Sum_probs=8.1
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+.+
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvh_A 3 PFSCSLCPQR 12 (27)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCcChh
Confidence 3899999875
No 29
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=37.17 E-value=13 Score=27.18 Aligned_cols=41 Identities=15% Similarity=0.318 Sum_probs=26.9
Q ss_pred CceEEEEecCCCCCcc-ccccChhhcc-CceEEEEcCCCCcce
Q 029824 98 HDLAMIFTCKVCETRS-VKTACRESYE-KGVVVARCGGCNNLH 138 (187)
Q Consensus 98 ~~l~l~FTC~~C~tRs-~k~iSk~AY~-~GvViVqC~gC~n~H 138 (187)
+.-|+.|||+.|+..- ...+.+|.+. +|.-...|-.|....
T Consensus 5 ~~~MV~F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F 47 (79)
T 1wjv_A 5 SSGMVFFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDF 47 (79)
T ss_dssp SCCCCEEEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEE
T ss_pred CCceeEEEcCCCCCeeecccchhHHhhCCCCCcEEecccCCee
Confidence 3458899999999654 3456677653 344456666666543
No 30
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=36.44 E-value=10 Score=31.05 Aligned_cols=47 Identities=28% Similarity=0.547 Sum_probs=29.6
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcceeeeccccCcCCC
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEP 150 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnLgwF~e~ 150 (187)
.-...|..|+.+-...--......+ .+-+||.|.. ++-.+.=||+|.
T Consensus 119 ~~~~~C~~C~~~~~~~~~~~~~~~~-~~p~C~~Cgg--~lrP~vv~FgE~ 165 (246)
T 1yc5_A 119 VEEYYCVRCEKKYTVEDVIKKLESS-DVPLCDDCNS--LIRPNIVFFGEN 165 (246)
T ss_dssp EEEEEETTTCCEEEHHHHHHHTTTC-SSCBCTTTCC--BEEEEECCBTSB
T ss_pred cceeEcCCCCCCCcHHHHHHHhccC-CCCCCCCCCC--ccCcceEECCCC
Confidence 3467799998752110000112333 3569999984 688999999984
No 31
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=36.10 E-value=17 Score=31.07 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=29.4
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcceeeeccccCcCC
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE 149 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnLgwF~e 149 (187)
+....|..|+.+-...--+.....+. +-+|+.|. .+|-.+.=||+|
T Consensus 137 ~~~~~C~~C~~~~~~~~~~~~i~~~~-~P~C~~Cg--g~lrP~IV~FGE 182 (285)
T 3glr_A 137 FASATCTVCQRPFPGEDIRADVMADR-VPRCPVCT--GVVKPDIVFFGE 182 (285)
T ss_dssp EEEEEETTTCCEEEGGGGHHHHHTTC-CCBCTTTC--CBEEEEECCTTS
T ss_pred CCeEEECCCCCcCCHHHHHHHhhcCC-CCCCCCCC--CccCCcEEEeCC
Confidence 44678999996532211111111232 47899997 579999999998
No 32
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=35.66 E-value=14 Score=28.24 Aligned_cols=26 Identities=27% Similarity=0.687 Sum_probs=18.5
Q ss_pred EecCCCCCccccccChhhccCceEEEEcCCCCcc-ee
Q 029824 104 FTCKVCETRSVKTACRESYEKGVVVARCGGCNNL-HL 139 (187)
Q Consensus 104 FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~-HL 139 (187)
..| +|+.. |..+--.|+|.+|..| |.
T Consensus 9 ~~C-~C~~~---------~~~~~~mi~Cd~C~~WfH~ 35 (174)
T 2ri7_A 9 LYC-ICKTP---------EDESKFYIGCDRCQNWYHG 35 (174)
T ss_dssp EET-TTTEE---------CCTTSCEEECTTTCCEEEH
T ss_pred cEe-eCCCC---------CCCCCCEeECCCCCchhCh
Confidence 357 88754 4445568999999987 54
No 33
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=35.24 E-value=14 Score=18.30 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=7.4
Q ss_pred EecCCCCCc
Q 029824 104 FTCKVCETR 112 (187)
Q Consensus 104 FTC~~C~tR 112 (187)
|.|..|+.+
T Consensus 3 ~~C~~C~k~ 11 (29)
T 1rik_A 3 FACPECPKR 11 (29)
T ss_dssp EECSSSSCE
T ss_pred ccCCCCCch
Confidence 789999865
No 34
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=34.73 E-value=15 Score=18.20 Aligned_cols=9 Identities=44% Similarity=1.372 Sum_probs=7.7
Q ss_pred EecCCCCCc
Q 029824 104 FTCKVCETR 112 (187)
Q Consensus 104 FTC~~C~tR 112 (187)
|.|..|+..
T Consensus 4 ~~C~~C~k~ 12 (28)
T 2kvf_A 4 YSCSVCGKR 12 (28)
T ss_dssp EECSSSCCE
T ss_pred ccCCCCCcc
Confidence 889999865
No 35
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=34.55 E-value=19 Score=29.69 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=29.2
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcceeeeccccCcCCC
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEP 150 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnLgwF~e~ 150 (187)
.-...|..|+.+-...--......+. +-+||.|..- ++-.|.=||+|.
T Consensus 121 ~~~~~C~~C~~~~~~~~~~~~~~~~~-~p~C~~Cgg~-~lrP~Vv~FgE~ 168 (253)
T 1ma3_A 121 MDKLDCLDCHETYDWSEFVEDFNKGE-IPRCRKCGSY-YVKPRVVLFGEP 168 (253)
T ss_dssp EEEEEETTTCCEEEGGGTHHHHHTTC-CCCCTTTCCS-CEEEEECCBTSB
T ss_pred cCeeeeCCCCCcCcHHHHHHHhccCC-CCCCCCCCCc-cccceEEEeCCC
Confidence 34677999987521110011122343 4799999741 578888899984
No 36
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=33.81 E-value=6.2 Score=30.09 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=19.7
Q ss_pred eEEEEecCCCCCccccccChhhccCce-EEEEcCCCCcc
Q 029824 100 LAMIFTCKVCETRSVKTACRESYEKGV-VVARCGGCNNL 137 (187)
Q Consensus 100 l~l~FTC~~C~tRs~k~iSk~AY~~Gv-ViVqC~gC~n~ 137 (187)
+..-|.|+.||..- .+++ .=.+||.|+..
T Consensus 64 ~v~p~~C~~CG~~F---------~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 64 LIKPAQCRKCGFVF---------KAEINIPSRCPKCKSE 93 (105)
T ss_dssp EECCCBBTTTCCBC---------CCCSSCCSSCSSSCCC
T ss_pred EEECcChhhCcCee---------cccCCCCCCCcCCCCC
Confidence 34568899999873 1222 12789999875
No 37
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=33.75 E-value=18 Score=29.70 Aligned_cols=44 Identities=18% Similarity=0.471 Sum_probs=29.3
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcceeeeccccCcCCC
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEP 150 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnLgwF~e~ 150 (187)
.-...|..|+.+-...- ....+ .+-+||.|.. ++-.+.=||+|.
T Consensus 119 ~~~~~C~~C~~~~~~~~---~~~~~-~~p~C~~Cgg--~lrP~Vv~FgE~ 162 (249)
T 1m2k_A 119 LRVVRCTSCNNSFEVES---APKIP-PLPKCDKCGS--LLRPGVVWAGEM 162 (249)
T ss_dssp EEEEEESSSSCEEECSS---CCCSS-SCCBCSSSSS--BEEEEECCTTSC
T ss_pred cceeEeCCCCCcccchh---hccCC-CCCCCCCCCC--CcCCeEEecCCC
Confidence 34677999987421110 12344 3579999984 688899999984
No 38
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=33.08 E-value=15 Score=23.95 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=18.6
Q ss_pred ecCCCCCccccccChhhccCceEEEEcCCCCcc-ee
Q 029824 105 TCKVCETRSVKTACRESYEKGVVVARCGGCNNL-HL 139 (187)
Q Consensus 105 TC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~-HL 139 (187)
.|.+|+.. |..+...|+|..|..| |.
T Consensus 8 ~C~~C~~~---------~~~~~~mI~Cd~C~~WfH~ 34 (64)
T 1we9_A 8 QCGACGES---------YAADEFWICCDLCEMWFHG 34 (64)
T ss_dssp CCSSSCCC---------CCSSSCEEECSSSCCEEET
T ss_pred CCCCCCCc---------cCCCCCEEEccCCCCCCCc
Confidence 46677654 5556678999999876 54
No 39
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=39.25 E-value=9.1 Score=18.92 Aligned_cols=10 Identities=30% Similarity=0.956 Sum_probs=7.8
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+.+
T Consensus 2 p~~C~~C~k~ 11 (26)
T 2lvu_A 2 PYVCERCGKR 11 (26)
Confidence 3889999865
No 40
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=32.95 E-value=12 Score=18.31 Aligned_cols=9 Identities=33% Similarity=1.187 Sum_probs=7.4
Q ss_pred EecCCCCCc
Q 029824 104 FTCKVCETR 112 (187)
Q Consensus 104 FTC~~C~tR 112 (187)
|.|..|+..
T Consensus 2 ~~C~~C~k~ 10 (27)
T 1znf_A 2 YKCGLCERS 10 (27)
T ss_dssp CBCSSSCCB
T ss_pred ccCCCCCCc
Confidence 789999865
No 41
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.04 E-value=27 Score=24.45 Aligned_cols=16 Identities=19% Similarity=0.582 Sum_probs=8.5
Q ss_pred EEEEcCCCCcceeeec
Q 029824 127 VVARCGGCNNLHLIAD 142 (187)
Q Consensus 127 ViVqC~gC~n~HLIAD 142 (187)
+-|+||+|.|.-.|=+
T Consensus 14 m~VkCp~C~~~q~VFS 29 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFS 29 (63)
T ss_dssp EEEECSSSCCEEEEES
T ss_pred EEEECCCCCCeeEEEe
Confidence 4455666655554433
No 42
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=31.69 E-value=12 Score=29.66 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=26.7
Q ss_pred EecCCCCCccccccChhhccCceEEEEcCCCCcceee
Q 029824 104 FTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLI 140 (187)
Q Consensus 104 FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLI 140 (187)
-+|..|+...+..+- +.++.+.+|..|....-+
T Consensus 105 VlC~~C~sPdT~L~k----~~r~~~l~C~ACGa~~~V 137 (148)
T 2d74_B 105 VICPVCGSPDTKIIK----RDRFHFLKCEACGAETPI 137 (148)
T ss_dssp SSCSSSCCTTCCCCB----SSSSBCCCCSSSCCCCCC
T ss_pred EECCCCCCcCcEEEE----eCCEEEEEecCCCCCccc
Confidence 369999998887774 468999999999876554
No 43
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=31.46 E-value=18 Score=23.15 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=14.5
Q ss_pred hccCceEEEEcC-CCCcc-ee
Q 029824 121 SYEKGVVVARCG-GCNNL-HL 139 (187)
Q Consensus 121 AY~~GvViVqC~-gC~n~-HL 139 (187)
.|..|.-.|+|. +|..| |.
T Consensus 11 p~~~~~~mI~Cd~~C~~WfH~ 31 (52)
T 2kgg_A 11 PCKDKVDWVQCDGGCDEWFHQ 31 (52)
T ss_dssp CCCTTCCEEECTTTTCCEEET
T ss_pred ccCCCCcEEEeCCCCCccCcc
Confidence 466677889999 89876 44
No 44
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.85 E-value=14 Score=18.55 Aligned_cols=9 Identities=22% Similarity=1.076 Sum_probs=7.5
Q ss_pred EecCCCCCc
Q 029824 104 FTCKVCETR 112 (187)
Q Consensus 104 FTC~~C~tR 112 (187)
|.|..|+..
T Consensus 4 ~~C~~C~k~ 12 (27)
T 2kvg_A 4 YRCPLCRAG 12 (27)
T ss_dssp EEETTTTEE
T ss_pred cCCCCCCcc
Confidence 889999864
No 45
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=30.84 E-value=13 Score=29.12 Aligned_cols=32 Identities=16% Similarity=0.499 Sum_probs=26.5
Q ss_pred ecCCCCCccccccChhhccCceEEEEcCCCCcceee
Q 029824 105 TCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLI 140 (187)
Q Consensus 105 TC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLI 140 (187)
+|..|+...+..+- ++++.+.+|..|....-+
T Consensus 104 lC~~C~sPdT~l~k----~~r~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 104 ICHECNRPDTRIIR----EGRISLLKCEACGAKAPL 135 (138)
T ss_dssp HHTCCSSCSSCCEE----ETTTTEEECSTTSCCCCS
T ss_pred ECCCCCCcCcEEEE----cCCeEEEEccCCCCCccc
Confidence 69999999888774 469999999999887544
No 46
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.76 E-value=19 Score=18.75 Aligned_cols=10 Identities=20% Similarity=0.833 Sum_probs=8.2
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 7 ~~~C~~C~k~ 16 (35)
T 2elx_A 7 GYVCALCLKK 16 (35)
T ss_dssp SEECSSSCCE
T ss_pred CeECCCCcch
Confidence 3899999875
No 47
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=30.69 E-value=29 Score=31.53 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=20.7
Q ss_pred CCceEEEEecCCCCCccccccChhhcc-CceE
Q 029824 97 RHDLAMIFTCKVCETRSVKTACRESYE-KGVV 127 (187)
Q Consensus 97 R~~l~l~FTC~~C~tRs~k~iSk~AY~-~GvV 127 (187)
|.=+.|.|.|..||.|+....+=.+.. +|+.
T Consensus 243 ~eViims~~C~~CGyr~neVk~~g~i~~~G~r 274 (404)
T 2qkd_A 243 KEVIIMATNCENCGHRTNEVKSGGAVEPLGTR 274 (404)
T ss_dssp CCEEEEEEECSSSCCEEEEEEECSSSCCCEEE
T ss_pred CcEEEEEEECCCCCCcccceeeccccCCCcEE
Confidence 556788888888888886655544443 4443
No 48
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=30.47 E-value=37 Score=27.17 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=10.4
Q ss_pred CCceEEEEecCCCCCccccc
Q 029824 97 RHDLAMIFTCKVCETRSVKT 116 (187)
Q Consensus 97 R~~l~l~FTC~~C~tRs~k~ 116 (187)
|+..-+.+.|+.|+..++-.
T Consensus 64 RG~aNfv~KCk~C~re~Si~ 83 (164)
T 1zso_A 64 RGTANFMIKWTEYPKYSTIN 83 (164)
T ss_dssp SCEESEEECCSSSSCCEEEE
T ss_pred CcceeEEEeccccCCcceEE
Confidence 44455555566555544433
No 49
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=29.91 E-value=30 Score=25.36 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=9.1
Q ss_pred CccCCCCceEEEEecCCCCC
Q 029824 92 LKTSARHDLAMIFTCKVCET 111 (187)
Q Consensus 92 ~k~~pR~~l~l~FTC~~C~t 111 (187)
+..+|+ +..|--.|..|+.
T Consensus 22 Lv~~Pn-S~Fm~VkCp~C~n 40 (81)
T 2xzm_6 22 LIQAPN-SYFMDVKCAQCQN 40 (81)
T ss_dssp SSCCCS-CCEEEEECSSSCC
T ss_pred eeeCCC-CcEEEeECCCCCC
Confidence 334554 2335555655543
No 50
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=29.73 E-value=31 Score=24.36 Aligned_cols=19 Identities=32% Similarity=0.676 Sum_probs=13.8
Q ss_pred eEEEEcCCCCcceeeeccc
Q 029824 126 VVVARCGGCNNLHLIADHL 144 (187)
Q Consensus 126 vViVqC~gC~n~HLIADnL 144 (187)
-+-|+||+|.|.=.|=+|-
T Consensus 5 Fm~VKCp~C~niq~VFShA 23 (66)
T 1qxf_A 5 FVKVKCPDCEHEQVIFDHP 23 (66)
T ss_dssp EEEEECTTTCCEEEEESSC
T ss_pred eEEEECCCCCCceEEEecC
Confidence 3668888888887775554
No 51
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=29.66 E-value=20 Score=18.80 Aligned_cols=10 Identities=30% Similarity=1.042 Sum_probs=8.3
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 7 ~~~C~~C~k~ 16 (35)
T 1srk_A 7 PFVCRICLSA 16 (35)
T ss_dssp CEECSSSCCE
T ss_pred CeeCCCCCcc
Confidence 3899999875
No 52
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=29.06 E-value=49 Score=24.45 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=25.3
Q ss_pred eEEEEecCCCCCccccccC-----hhhccCceE---EEEcCCCCcceeeeccc
Q 029824 100 LAMIFTCKVCETRSVKTAC-----RESYEKGVV---VARCGGCNNLHLIADHL 144 (187)
Q Consensus 100 l~l~FTC~~C~tRs~k~iS-----k~AY~~GvV---iVqC~gC~n~HLIADnL 144 (187)
-.=+|+|..|+....+.-. +|.|+.=-+ +-+|+ |.++.+-.|.|
T Consensus 12 ~~~av~C~~C~yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~-C~~Rt~sl~r~ 63 (92)
T 2kwq_A 12 SCRVVTCKTCKYTHFKPKETCVSENHDFHWHNGVKRFFKCP-CGNRTISLDRL 63 (92)
T ss_dssp EEEEEEETTTCCEESSCCHHHHHTTCCEEEEEEECEEEECT-TSCEEEESSSS
T ss_pred eEEEEEccCCcceecCcchhHHhcCCceEEEeeeEEEEECC-CCCceeEeeeC
Confidence 3457899999955333221 222222111 46896 99998777654
No 53
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=28.92 E-value=35 Score=25.57 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=8.2
Q ss_pred eEEEEcCCCCccee
Q 029824 126 VVVARCGGCNNLHL 139 (187)
Q Consensus 126 vViVqC~gC~n~HL 139 (187)
.|+++|-.|....-
T Consensus 92 ~vv~tCl~Cg~~kR 105 (120)
T 1x0t_A 92 HVVITCLECGYIMR 105 (120)
T ss_dssp EEEEEETTTCCEEE
T ss_pred EEEEECCCCCCEEE
Confidence 56666666665443
No 54
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=28.58 E-value=15 Score=18.08 Aligned_cols=9 Identities=44% Similarity=1.246 Sum_probs=7.3
Q ss_pred EecCCCCCc
Q 029824 104 FTCKVCETR 112 (187)
Q Consensus 104 FTC~~C~tR 112 (187)
|.|..|+..
T Consensus 3 ~~C~~C~~~ 11 (29)
T 1ard_A 3 FVCEVCTRA 11 (29)
T ss_dssp CBCTTTCCB
T ss_pred eECCCCCcc
Confidence 789999865
No 55
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=28.30 E-value=18 Score=27.60 Aligned_cols=30 Identities=27% Similarity=0.640 Sum_probs=22.5
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~ 137 (187)
...|||..|+....+.. ++=|-+|..|...
T Consensus 34 ~aky~CpfCgk~~vKR~-------a~GIW~C~kCg~~ 63 (103)
T 4a17_Y 34 HAKYGCPFCGKVAVKRA-------AVGIWKCKPCKKI 63 (103)
T ss_dssp HSCEECTTTCCEEEEEE-------ETTEEEETTTTEE
T ss_pred hcCCCCCCCCCceeeec-------CcceEEcCCCCCE
Confidence 34799999998865553 3557899999764
No 56
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.85 E-value=92 Score=26.95 Aligned_cols=49 Identities=16% Similarity=0.015 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcceeeeccccCcCCC------CC--HHHHHHHcCCceeeecccccCc
Q 029824 124 KGVVVARCGGCNNLHLIADHLGWFGEP------GS--IEDFLAARGEEVKKGSVDTLNL 174 (187)
Q Consensus 124 ~GvViVqC~gC~n~HLIADnLgwF~e~------~n--IEdil~~kGe~V~kg~~~~~~l 174 (187)
.++-+-.|..|+.+..+.|.-.--.-. .| +.-++.++| ..++..+-+-+
T Consensus 249 ~~~r~e~C~~C~~YlK~~~~~~d~~~dp~adDlatL~LDl~a~e~G--y~r~~~Npfl~ 305 (309)
T 2fiy_A 249 AVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLAEDG--YLRRSPNLLLA 305 (309)
T ss_dssp CSEEEEEETTTTEEEEEEETTTCTTCCHHHHHHTTHHHHHHHHHTT--CEECCCCTTCC
T ss_pred cceEEEEcccccchHhhhhhccCCCCCcchhHHHHHHHHHHHHhcC--CCCCCCCcccC
Confidence 568899999999999998763321100 12 333456666 66665554433
No 57
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.80 E-value=23 Score=17.26 Aligned_cols=9 Identities=22% Similarity=0.988 Sum_probs=7.3
Q ss_pred EecCCCCCc
Q 029824 104 FTCKVCETR 112 (187)
Q Consensus 104 FTC~~C~tR 112 (187)
|.|..|+..
T Consensus 3 ~~C~~C~k~ 11 (29)
T 2m0f_A 3 LKCRECGKQ 11 (29)
T ss_dssp EECTTTSCE
T ss_pred ccCCCCCCc
Confidence 789999864
No 58
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.15 E-value=23 Score=17.33 Aligned_cols=10 Identities=20% Similarity=0.790 Sum_probs=7.8
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 3 ~~~C~~C~~~ 12 (30)
T 2m0d_A 3 PYQCDYCGRS 12 (30)
T ss_dssp CEECTTTCCE
T ss_pred CccCCCCCcc
Confidence 3889999865
No 59
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.10 E-value=23 Score=18.76 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=8.4
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 9 ~~~C~~C~k~ 18 (36)
T 2elq_A 9 PFKCSLCEYA 18 (36)
T ss_dssp SEECSSSSCE
T ss_pred CccCCCCCch
Confidence 4899999875
No 60
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.65 E-value=23 Score=18.73 Aligned_cols=10 Identities=50% Similarity=1.185 Sum_probs=8.4
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 9 ~~~C~~C~k~ 18 (36)
T 2els_A 9 IFTCEYCNKV 18 (36)
T ss_dssp CEECTTTCCE
T ss_pred CEECCCCCce
Confidence 4899999875
No 61
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=26.49 E-value=17 Score=17.86 Aligned_cols=9 Identities=44% Similarity=1.279 Sum_probs=7.3
Q ss_pred EecCCCCCc
Q 029824 104 FTCKVCETR 112 (187)
Q Consensus 104 FTC~~C~tR 112 (187)
|.|..|+..
T Consensus 3 ~~C~~C~k~ 11 (30)
T 1klr_A 3 YQCQYCEFR 11 (30)
T ss_dssp CCCSSSSCC
T ss_pred ccCCCCCCc
Confidence 789999865
No 62
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.49 E-value=25 Score=18.63 Aligned_cols=10 Identities=30% Similarity=1.354 Sum_probs=8.3
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 9 ~~~C~~C~k~ 18 (36)
T 2elv_A 9 LYDCHICERK 18 (36)
T ss_dssp CEECSSSCCE
T ss_pred CeECCCCCCc
Confidence 4899999965
No 63
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.34 E-value=18 Score=26.39 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=22.5
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~ 137 (187)
...|||..|+..+.+.. ++=|-+|..|...
T Consensus 33 ~~ky~CpfCGk~~vkR~-------a~GIW~C~kCg~~ 62 (83)
T 3j21_i 33 RQKHTCPVCGRKAVKRI-------STGIWQCQKCGAT 62 (83)
T ss_dssp HSCBCCSSSCSSCEEEE-------ETTEEEETTTCCE
T ss_pred hcccCCCCCCCceeEec-------CcCeEEcCCCCCE
Confidence 34799999998876653 3557899999764
No 64
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=26.27 E-value=14 Score=35.24 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=2.2
Q ss_pred eEEEEecCCCCCccccccChhhccCceEEEEcCC---CCcceeeeccccCcCCC----------CCHHHHHHHcCCceee
Q 029824 100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGG---CNNLHLIADHLGWFGEP----------GSIEDFLAARGEEVKK 166 (187)
Q Consensus 100 l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~g---C~n~HLIADnLgwF~e~----------~nIEdil~~kGe~V~k 166 (187)
+.+-=+|.+||+.-.+. ..|-+..+|++ |... +--.|-||..+ .+||.++ ++| ..+
T Consensus 412 ~~~P~~CP~Cgs~l~~~------~~~~~~~rC~n~~~CpaQ--~~~~l~hf~Sr~amdI~GlG~~~i~~L~-~~g--~i~ 480 (615)
T 3sgi_A 412 FIMPTTCPECGSPLAPE------KEGDADIRCPNARGCPGQ--LRERVFHVASRNGLDIEVLGYEAGVALL-QAK--VIA 480 (615)
T ss_dssp CCCC----------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCeeeec------CCCCEEEEcCCCCCCHHH--HHHHHHHHhccCccCccccCHHHHHHHH-HCC--CcC
Confidence 45556799999863321 24667899986 7664 44577888642 2344433 233 223
Q ss_pred ecccccCcccccccCcc
Q 029824 167 GSVDTLNLTLEDLAGRE 183 (187)
Q Consensus 167 g~~~~~~lt~eDl~g~~ 183 (187)
.-.|-+.|+.|||...+
T Consensus 481 ~~aDly~L~~~~L~~l~ 497 (615)
T 3sgi_A 481 DEGELFALTERDLLRTD 497 (615)
T ss_dssp -----------------
T ss_pred CHHHHhhCCHHHHhhcc
Confidence 34566678888887543
No 65
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=26.07 E-value=19 Score=26.84 Aligned_cols=30 Identities=23% Similarity=0.558 Sum_probs=22.5
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~ 137 (187)
...|||..|+.-..+.. ++=|-+|..|...
T Consensus 34 ~~ky~CpfCgk~~vkR~-------a~GIW~C~~Cg~~ 63 (92)
T 3iz5_m 34 HSKYFCEFCGKFAVKRK-------AVGIWGCKDCGKV 63 (92)
T ss_dssp HSCBCCTTTCSSCBEEE-------ETTEEECSSSCCE
T ss_pred hccccCcccCCCeeEec-------CcceEEcCCCCCE
Confidence 34689999998876652 3557899999764
No 66
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=25.65 E-value=34 Score=28.69 Aligned_cols=39 Identities=26% Similarity=0.587 Sum_probs=24.3
Q ss_pred EEEEecCCCCCccccccCh-------hhc--------c--CceEEEEcCCCCcceee
Q 029824 101 AMIFTCKVCETRSVKTACR-------ESY--------E--KGVVVARCGGCNNLHLI 140 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk-------~AY--------~--~GvViVqC~gC~n~HLI 140 (187)
+-..+|.+|+.. .+.|-. .+| + --+.+.+|+.|.-..+-
T Consensus 10 ~~~~~C~~Cg~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~ 65 (416)
T 4e2x_A 10 SPPTACRVCGGG-VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLT 65 (416)
T ss_dssp --CEECTTTSCE-EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEES
T ss_pred ccCCcCCCCCCe-eeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeec
Confidence 345799999998 555511 122 1 13678999999866543
No 67
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=25.60 E-value=27 Score=28.01 Aligned_cols=49 Identities=6% Similarity=-0.059 Sum_probs=32.7
Q ss_pred CCccCCCCceEEEEecCCCCCccccccChhhcc-------Cc--eEEEEcCCCCcceee
Q 029824 91 NLKTSARHDLAMIFTCKVCETRSVKTACRESYE-------KG--VVVARCGGCNNLHLI 140 (187)
Q Consensus 91 ~~k~~pR~~l~l~FTC~~C~tRs~k~iSk~AY~-------~G--vViVqC~gC~n~HLI 140 (187)
+|.+.|-..+.+...|.-|++.+.+ +.=...+ +| -.+.+|..|+..+-|
T Consensus 25 ~L~p~~~~~~~fkvkC~~C~E~~~k-v~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si 82 (164)
T 1zso_A 25 RLFCDDEYLWIFNIRDSTSSLTRDN-IQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI 82 (164)
T ss_dssp EEECCTTCCEEEEEEETTSSCEEEE-EEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred eeecCCCcEEEEEEEECCCCcccCC-EEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence 3433455678999999999987665 4321111 23 467899999987765
No 68
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=25.56 E-value=41 Score=24.65 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=7.3
Q ss_pred EEEEcCCCCcceeee
Q 029824 127 VVARCGGCNNLHLIA 141 (187)
Q Consensus 127 ViVqC~gC~n~HLIA 141 (187)
+-|+|+||.|.-.|=
T Consensus 33 m~VkCp~C~~~q~VF 47 (82)
T 3u5c_b 33 LDVKCPGCLNITTVF 47 (82)
T ss_dssp EEEECTTSCSCEEEE
T ss_pred EEEECCCCCCeeEEE
Confidence 445555555544443
No 69
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.55 E-value=17 Score=29.87 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=21.3
Q ss_pred ecCCCCCc-cccccChhhccCceEEEEcCCCCccee
Q 029824 105 TCKVCETR-SVKTACRESYEKGVVVARCGGCNNLHL 139 (187)
Q Consensus 105 TC~~C~tR-s~k~iSk~AY~~GvViVqC~gC~n~HL 139 (187)
+|..|... +...++...- |--||+||.|.-.-.
T Consensus 200 ~C~GC~~~lppq~~~~i~~--~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLT--SGDMITCPYCGRILY 233 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHH--SSSCEECTTTCCEEE
T ss_pred ccCCCCeeeCHHHHHHHHC--CCCEEECCCCCeeEE
Confidence 79999875 2333333332 445689999998744
No 70
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=25.21 E-value=32 Score=22.98 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=15.2
Q ss_pred EEEEcCCCCccee---eeccccCcC
Q 029824 127 VVARCGGCNNLHL---IADHLGWFG 148 (187)
Q Consensus 127 ViVqC~gC~n~HL---IADnLgwF~ 148 (187)
-|+.|+.|...|| +-.+ |.|.
T Consensus 26 ~l~~c~~cGe~~l~H~vc~~-G~Y~ 49 (56)
T 3r8s_0 26 SLSVDKTSGEKHLRHHITAD-GYYR 49 (56)
T ss_dssp CEEECTTTCCEEETTBCCTT-SEET
T ss_pred ceeECCCCCCeecccEECCC-CeEC
Confidence 4899999998654 4555 7664
No 71
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.18 E-value=26 Score=18.65 Aligned_cols=10 Identities=20% Similarity=0.697 Sum_probs=8.3
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 9 ~~~C~~C~k~ 18 (37)
T 2elp_A 9 AMKCPYCDFY 18 (37)
T ss_dssp CEECSSSSCE
T ss_pred CeECCCCChh
Confidence 4899999865
No 72
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=25.06 E-value=19 Score=25.54 Aligned_cols=32 Identities=19% Similarity=0.502 Sum_probs=22.2
Q ss_pred ceEEEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824 99 DLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 99 ~l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~ 137 (187)
...+.-.|+.|+..+.-.+ .++-.+|++|...
T Consensus 33 ~~~v~I~CnDC~~~s~v~~-------h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQF-------HILGMKCKICESY 64 (79)
T ss_dssp CCEEEEEESSSCCEEEEEC-------CTTCCCCTTTSCC
T ss_pred CCEeEEECCCCCCCccCCc-------eeecccCcCCCCc
Confidence 3466788999999875544 1222379999876
No 73
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.96 E-value=27 Score=18.32 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=8.3
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 9 ~~~C~~C~k~ 18 (36)
T 2elt_A 9 PYKCPQCSYA 18 (36)
T ss_dssp SEECSSSSCE
T ss_pred CCCCCCCCcc
Confidence 4899999865
No 74
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=24.82 E-value=26 Score=30.88 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=29.2
Q ss_pred EEEEecCCCCCcccc-ccChhhcc--CceEEEEcCCCCcceeeeccccCcCCC
Q 029824 101 AMIFTCKVCETRSVK-TACRESYE--KGVVVARCGGCNNLHLIADHLGWFGEP 150 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k-~iSk~AY~--~GvViVqC~gC~n~HLIADnLgwF~e~ 150 (187)
+-.+.|..|+.+-.. .+- .... ..-.+-+||.|.. +|-.+.=||+|.
T Consensus 142 l~~~~C~~C~~~~~~~~~~-~~~~~~~~~~~P~Cp~Cgg--~lrP~VV~FGE~ 191 (361)
T 1q14_A 142 FAHCHCIGCGKVYPPQVFK-SKLAEHPIKDFVKCDVCGE--LVKPAIVFFGED 191 (361)
T ss_dssp EEEEEETTTCCEECTHHHH-HHTTSSSCSCCCBCTTTCC--BEEEEECCBTSC
T ss_pred ccccCcCCCCccCcHHHHH-HHHhhcccCCCCCCcCCCC--EeCCCccccccc
Confidence 456789999864211 111 1111 1113579999985 688999999995
No 75
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=24.69 E-value=26 Score=19.02 Aligned_cols=10 Identities=30% Similarity=1.012 Sum_probs=8.1
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 6 ~~~C~~C~k~ 15 (39)
T 1njq_A 6 SYTCSFCKRE 15 (39)
T ss_dssp SEECTTTCCE
T ss_pred ceECCCCCcc
Confidence 3899999865
No 76
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.64 E-value=27 Score=18.91 Aligned_cols=10 Identities=20% Similarity=0.863 Sum_probs=8.6
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 9 ~~~C~~C~k~ 18 (37)
T 2elm_A 9 LYYCSQCHYS 18 (37)
T ss_dssp EEECSSSSCE
T ss_pred CeECCCCCcc
Confidence 4999999975
No 77
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=24.59 E-value=32 Score=32.43 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=9.9
Q ss_pred hhccCceEEEEcCCCCcc
Q 029824 120 ESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 120 ~AY~~GvViVqC~gC~n~ 137 (187)
..++.+...|+|++|+.|
T Consensus 50 ~~~n~~~~mI~CD~C~~W 67 (528)
T 3pur_A 50 HHKKNDFQWIGCDSCQTW 67 (528)
T ss_dssp TTTTSTTSEEECTTTCCE
T ss_pred cCCCcCCCEEECCCCCcC
Confidence 344455566666666543
No 78
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=24.55 E-value=23 Score=29.70 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=29.1
Q ss_pred EEEEecCCCCCcccc-ccChhhc--cCceEEEEcCCCCcceeeeccccCcCCC
Q 029824 101 AMIFTCKVCETRSVK-TACRESY--EKGVVVARCGGCNNLHLIADHLGWFGEP 150 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k-~iSk~AY--~~GvViVqC~gC~n~HLIADnLgwF~e~ 150 (187)
+-...|..|+.+-.. .+-.... ..+ .+-+||.|.. ++-.+.=||+|.
T Consensus 134 ~~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~P~C~~Cgg--~lrP~vv~FGE~ 183 (289)
T 1q1a_A 134 FAHCHCIGCGKVYPPQVFKSKLAEHPIK-DFVKCDVCGE--LVKPAIVFFGED 183 (289)
T ss_dssp EEEEEETTTCCEECHHHHHHHHTCSSCC-SCCBCTTTCC--BEEEEECCBTSB
T ss_pred cCceEECCCCCCCcHHHHHHHHhhccCC-CCccCCCCCC--EECCCEEEcCCC
Confidence 446789999764221 1101000 112 3579999984 788999999994
No 79
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.40 E-value=20 Score=17.43 Aligned_cols=9 Identities=22% Similarity=0.958 Sum_probs=7.0
Q ss_pred EecCCCCCc
Q 029824 104 FTCKVCETR 112 (187)
Q Consensus 104 FTC~~C~tR 112 (187)
|.|..|+..
T Consensus 3 ~~C~~C~~~ 11 (29)
T 2m0e_A 3 HKCPHCDKK 11 (29)
T ss_dssp CCCSSCCCC
T ss_pred CcCCCCCcc
Confidence 678888865
No 80
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.33 E-value=28 Score=19.54 Aligned_cols=10 Identities=20% Similarity=0.767 Sum_probs=8.4
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 12 ~~~C~~C~k~ 21 (44)
T 2epv_A 12 PYECNECGKA 21 (44)
T ss_dssp SEECSSSCCE
T ss_pred CeECCCCCcc
Confidence 4999999975
No 81
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.29 E-value=43 Score=24.75 Aligned_cols=18 Identities=28% Similarity=0.730 Sum_probs=10.3
Q ss_pred eEEEEcCCCCcceeeecc
Q 029824 126 VVVARCGGCNNLHLIADH 143 (187)
Q Consensus 126 vViVqC~gC~n~HLIADn 143 (187)
-+-|+|++|.|.-.|=+|
T Consensus 34 Fm~VkCp~C~~~~~VFSh 51 (86)
T 3iz6_X 34 FMDVKCQGCFNITTVFSH 51 (86)
T ss_dssp EEEEECTTTCCEEEEETT
T ss_pred EeEEECCCCCCeeEEEec
Confidence 345666666666555444
No 82
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=24.18 E-value=17 Score=25.97 Aligned_cols=30 Identities=20% Similarity=0.591 Sum_probs=21.8
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~ 137 (187)
...|||..|+....+.. ++=|-+|..|...
T Consensus 24 ~~ky~C~fCgk~~vkR~-------a~GIW~C~~C~~~ 53 (72)
T 3jyw_9 24 HARYDCSFCGKKTVKRG-------AAGIWTCSCCKKT 53 (72)
T ss_dssp HSCBCCSSCCSSCBSBC-------SSSCBCCSSSCCC
T ss_pred ccCccCCCCCCceeEec-------CCCeEECCCCCCE
Confidence 34689999998866553 3556789999753
No 83
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=23.69 E-value=19 Score=21.82 Aligned_cols=35 Identities=29% Similarity=0.587 Sum_probs=23.2
Q ss_pred EEecCCCCCcc--ccccChhhc--c-CceEEEEcCCCCcc
Q 029824 103 IFTCKVCETRS--VKTACRESY--E-KGVVVARCGGCNNL 137 (187)
Q Consensus 103 ~FTC~~C~tRs--~k~iSk~AY--~-~GvViVqC~gC~n~ 137 (187)
.|.|..|+..- ...+.++.. + .|.-.-+|+-|...
T Consensus 10 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~ 49 (66)
T 2drp_A 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKE 49 (66)
T ss_dssp EEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCE
T ss_pred ceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCc
Confidence 59999999653 333444432 3 36667899999865
No 84
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.61 E-value=31 Score=21.21 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=22.6
Q ss_pred EEecCCCCCccc-cccChhhccCceEEEEcC-CCCcc
Q 029824 103 IFTCKVCETRSV-KTACRESYEKGVVVARCG-GCNNL 137 (187)
Q Consensus 103 ~FTC~~C~tRs~-k~iSk~AY~~GvViVqC~-gC~n~ 137 (187)
.|.|..|+..-. ..+.+|....|-.-.+|+ .|...
T Consensus 10 ~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~ 46 (66)
T 2eod_A 10 TQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVG 46 (66)
T ss_dssp EEECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCC
T ss_pred CeeccccCCccCHHHHHHHHHHcCCcCccCCcccCcc
Confidence 599999986532 222233222667778999 99875
No 85
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=23.51 E-value=22 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.591 Sum_probs=22.2
Q ss_pred EEEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL 137 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~ 137 (187)
...|||..|+....+.. ++=|-+|..|...
T Consensus 34 ~~ky~CpfCgk~~vkR~-------a~GIW~C~~C~~~ 63 (92)
T 3izc_m 34 HARYDCSFCGKKTVKRG-------AAGIWTCSCCKKT 63 (92)
T ss_dssp HSCCCCSSSCSSCCEEE-------ETTEEECTTTCCE
T ss_pred hcCCcCCCCCCceeeec-------ccceEEcCCCCCE
Confidence 34799999998865553 3457799999764
No 86
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=23.34 E-value=46 Score=25.17 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=10.0
Q ss_pred eEEEEcCCCCcceee
Q 029824 126 VVVARCGGCNNLHLI 140 (187)
Q Consensus 126 vViVqC~gC~n~HLI 140 (187)
.|+++|-.|....-+
T Consensus 87 ~vv~tCl~Cg~~kR~ 101 (123)
T 2k3r_A 87 HIVVKCLECGHIMRY 101 (123)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEECCCCCCEEEE
Confidence 577777777765444
No 87
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=23.33 E-value=30 Score=28.53 Aligned_cols=37 Identities=16% Similarity=0.434 Sum_probs=20.5
Q ss_pred eEEEEecCCCCCccc-cccChh-hccCceEEEEcCCCCc
Q 029824 100 LAMIFTCKVCETRSV-KTACRE-SYEKGVVVARCGGCNN 136 (187)
Q Consensus 100 l~l~FTC~~C~tRs~-k~iSk~-AY~~GvViVqC~gC~n 136 (187)
--+.|+|..|++.+. ..+... .+.--...++|+.|+.
T Consensus 19 ~~l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~ 57 (206)
T 3flo_B 19 VTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQ 57 (206)
T ss_dssp CCEEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCC
T ss_pred ceeEEECCCCCCccCCCCcccCCCcccccccccCCCCCC
Confidence 356899999987642 111110 0001113678999987
No 88
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=23.31 E-value=7.9 Score=34.18 Aligned_cols=26 Identities=35% Similarity=0.993 Sum_probs=16.0
Q ss_pred EEEecCCCCCccccccChhhccCceEEEEcCCCC
Q 029824 102 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCN 135 (187)
Q Consensus 102 l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~ 135 (187)
+.-.|.|||.++ .+||-||. .|.||+
T Consensus 49 ~~~~C~vC~~~~------~g~hygv~--~C~~C~ 74 (419)
T 3dzy_D 49 MAIECRVCGDKA------SGFHYGVH--ACEGCK 74 (419)
T ss_dssp -CCCCSSSCSCC------CSBCSSSB--CCHHHH
T ss_pred CCCcCeECCCcC------CCCccCcc--cchhhh
Confidence 344699999874 35666664 455554
No 89
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.25 E-value=14 Score=27.20 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=19.5
Q ss_pred EEEEecCCCCCccccccChhhccCceEEE-EcCCCCcc
Q 029824 101 AMIFTCKVCETRSVKTACRESYEKGVVVA-RCGGCNNL 137 (187)
Q Consensus 101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViV-qC~gC~n~ 137 (187)
-..|.|..||..-.. ..+ .. .||.|...
T Consensus 71 p~~~~C~~CG~~~e~----~~~-----~~~~CP~Cgs~ 99 (119)
T 2kdx_A 71 KVELECKDCSHVFKP----NAL-----DYGVCEKCHSK 99 (119)
T ss_dssp CCEEECSSSSCEECS----CCS-----TTCCCSSSSSC
T ss_pred cceEEcCCCCCEEeC----CCC-----CCCcCccccCC
Confidence 458999999987432 111 34 79999876
No 90
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=23.23 E-value=35 Score=24.92 Aligned_cols=26 Identities=15% Similarity=0.630 Sum_probs=17.4
Q ss_pred EEecCCCCCccccccChhhccCceEEEEcC-CCCcc
Q 029824 103 IFTCKVCETRSVKTACRESYEKGVVVARCG-GCNNL 137 (187)
Q Consensus 103 ~FTC~~C~tRs~k~iSk~AY~~GvViVqC~-gC~n~ 137 (187)
.|.|.+|... |...--+|+|. +|+.|
T Consensus 3 ~~~C~iC~~p---------~~~~~~mi~Cdd~C~~W 29 (105)
T 2xb1_A 3 VYPCGACRSE---------VNDDQDAILCEASCQKW 29 (105)
T ss_dssp CCBCTTTCSB---------CCTTSCEEECTTTTCCE
T ss_pred cCCCCCCCCc---------cCCCCCEEEecCCcccc
Confidence 4678888755 33333488998 99754
No 91
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.92 E-value=17 Score=18.12 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=7.6
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 2lvt_A 2 PCQCVMCGKA 11 (29)
Confidence 3789999865
No 92
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=23.13 E-value=13 Score=21.79 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=19.9
Q ss_pred EecCCCCCcc--ccccChh-hccCceEEEEcCCCCcc
Q 029824 104 FTCKVCETRS--VKTACRE-SYEKGVVVARCGGCNNL 137 (187)
Q Consensus 104 FTC~~C~tRs--~k~iSk~-AY~~GvViVqC~gC~n~ 137 (187)
|.|..|+..- ...+.++ ..+.|.-..+|+.|...
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 38 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFS 38 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCE
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCch
Confidence 6788888652 1222222 23566666788888764
No 93
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=23.09 E-value=20 Score=17.89 Aligned_cols=9 Identities=22% Similarity=1.091 Sum_probs=7.2
Q ss_pred EecCCCCCc
Q 029824 104 FTCKVCETR 112 (187)
Q Consensus 104 FTC~~C~tR 112 (187)
|.|..|+..
T Consensus 3 ~~C~~C~k~ 11 (30)
T 1paa_A 3 YACGLCNRA 11 (30)
T ss_dssp SBCTTTCCB
T ss_pred cCCcccCcc
Confidence 789999865
No 94
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=22.87 E-value=49 Score=23.49 Aligned_cols=29 Identities=28% Similarity=0.735 Sum_probs=18.4
Q ss_pred CCCceEEE----EecCCCCCccccccChhhccCceEEEEcCCCC
Q 029824 96 ARHDLAMI----FTCKVCETRSVKTACRESYEKGVVVARCGGCN 135 (187)
Q Consensus 96 pR~~l~l~----FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~ 135 (187)
|++.|.|. |+|+.|+... .|. +-+|..|+
T Consensus 36 p~H~L~L~~~~~~~C~~C~~~~----------~~~-~Y~C~~C~ 68 (89)
T 1v5n_A 36 EEHELELTRVQVYTCDKCEEEG----------TIW-SYHCDECD 68 (89)
T ss_dssp TTSCEEEECCSSCCCTTTSCCC----------CSC-EEECTTTC
T ss_pred CCCccEEeeCCCeEeCCCCCcC----------CCc-EEEcCCCC
Confidence 44445553 7899999652 233 35888885
No 95
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=22.86 E-value=18 Score=19.05 Aligned_cols=9 Identities=44% Similarity=1.272 Sum_probs=7.4
Q ss_pred EecCCCCCc
Q 029824 104 FTCKVCETR 112 (187)
Q Consensus 104 FTC~~C~tR 112 (187)
|.|..|+.+
T Consensus 3 ~~C~~C~k~ 11 (32)
T 2kfq_A 3 FACPACPKR 11 (32)
T ss_dssp SSSSSSCTT
T ss_pred CCCCCCCcc
Confidence 789999865
No 96
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=22.81 E-value=8.4 Score=22.69 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=20.7
Q ss_pred EEecCCCCCcc--ccccChh-hccCceEEEEcCCCCcc
Q 029824 103 IFTCKVCETRS--VKTACRE-SYEKGVVVARCGGCNNL 137 (187)
Q Consensus 103 ~FTC~~C~tRs--~k~iSk~-AY~~GvViVqC~gC~n~ 137 (187)
.|.|..|+..- ...+.++ ..+.|.-..+|+-|...
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 41 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYA 41 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcch
Confidence 47899998652 2222222 23456666789988765
No 97
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.63 E-value=23 Score=18.80 Aligned_cols=10 Identities=30% Similarity=0.873 Sum_probs=8.2
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 11 ~~~C~~C~k~ 20 (37)
T 1p7a_A 11 PFQCPDCDRS 20 (37)
T ss_dssp SBCCTTTCCC
T ss_pred CccCCCCCcc
Confidence 3899999865
No 98
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.38 E-value=18 Score=19.24 Aligned_cols=10 Identities=40% Similarity=1.135 Sum_probs=8.2
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 9 ~~~C~~C~k~ 18 (37)
T 2elo_A 9 SYSCPVCEKS 18 (37)
T ss_dssp CCEETTTTEE
T ss_pred CcCCCCCCCc
Confidence 4899999865
No 99
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.29 E-value=58 Score=26.06 Aligned_cols=38 Identities=18% Similarity=0.423 Sum_probs=28.6
Q ss_pred ecCCCCCccccccChhhccCceEEEEcCCCCcceeeeccc
Q 029824 105 TCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHL 144 (187)
Q Consensus 105 TC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnL 144 (187)
+|..|+...+..+-- -+.++.+.+|..|....-+.=+.
T Consensus 105 lC~~C~sPdT~L~~~--~~~r~~~l~C~ACGa~~~V~~~~ 142 (157)
T 2e9h_A 105 LCPECENPETDLHVN--PKKQTIGNSCKACGYRGMLDTHH 142 (157)
T ss_dssp SCTTTCCSCCEEEEE--TTTTEEEEECSSSCCEEECCCCS
T ss_pred ECCCCCCCccEEEEe--cCCCEEEEEccCCCCCCcccchh
Confidence 599999988876630 12789999999999887765433
No 100
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.04 E-value=37 Score=23.23 Aligned_cols=16 Identities=25% Similarity=0.711 Sum_probs=12.2
Q ss_pred ccCceEEEEcCCCCcc
Q 029824 122 YEKGVVVARCGGCNNL 137 (187)
Q Consensus 122 Y~~GvViVqC~gC~n~ 137 (187)
|..+...|+|..|..|
T Consensus 21 ~d~~~~MIqCd~C~~W 36 (79)
T 1wep_A 21 YNVNHFMIECGLCQDW 36 (79)
T ss_dssp CCSSSCEEEBTTTCCE
T ss_pred cCCCCceEEcCCCCCc
Confidence 3445678999999876
No 101
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=21.81 E-value=30 Score=30.16 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=20.9
Q ss_pred eccccCcCCCCCHHHHHHHcCCceeee
Q 029824 141 ADHLGWFGEPGSIEDFLAARGEEVKKG 167 (187)
Q Consensus 141 ADnLgwF~e~~nIEdil~~kGe~V~kg 167 (187)
-||+.|++ .|+|+|.++|.+-++.+
T Consensus 174 ~DHld~lG--~t~e~ia~~Ka~I~~~~ 198 (437)
T 3nrs_A 174 LDHTDWLG--YDRESIGREKAGVFRGG 198 (437)
T ss_dssp CCBCCCTT--CSHHHHHHHHGGGCCTT
T ss_pred HHHHHHhC--CcHHHHHHHHHhhccCC
Confidence 59999996 58999999998877654
No 102
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.65 E-value=21 Score=22.06 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=22.3
Q ss_pred EEecCCCCCcc--ccccChh-hccCceEEEEcCCCCcc
Q 029824 103 IFTCKVCETRS--VKTACRE-SYEKGVVVARCGGCNNL 137 (187)
Q Consensus 103 ~FTC~~C~tRs--~k~iSk~-AY~~GvViVqC~gC~n~ 137 (187)
.|.|..|+..- ...+.++ ..+.|.-..+|+-|...
T Consensus 9 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~ 46 (70)
T 1x5w_A 9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFD 46 (70)
T ss_dssp SEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCE
T ss_pred CeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCc
Confidence 48999999752 2223333 23556666789999865
No 103
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.57 E-value=25 Score=18.46 Aligned_cols=10 Identities=20% Similarity=0.836 Sum_probs=8.1
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 9 ~~~C~~C~k~ 18 (36)
T 2elr_A 9 THLCDMCGKK 18 (36)
T ss_dssp SCBCTTTCCB
T ss_pred CeecCcCCCC
Confidence 3899999965
No 104
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=21.32 E-value=25 Score=18.67 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=7.3
Q ss_pred EecCCCCCc
Q 029824 104 FTCKVCETR 112 (187)
Q Consensus 104 FTC~~C~tR 112 (187)
|.|..|+.+
T Consensus 3 ~~C~~C~k~ 11 (33)
T 1rim_A 3 FACPECPKR 11 (33)
T ss_dssp CCCSSSCCC
T ss_pred ccCCCCCch
Confidence 789999875
No 105
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=21.14 E-value=51 Score=26.75 Aligned_cols=39 Identities=18% Similarity=0.425 Sum_probs=30.1
Q ss_pred ecCCCCCccccccChhhccCceEEEEcCCCCcceeeecccc
Q 029824 105 TCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLG 145 (187)
Q Consensus 105 TC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnLg 145 (187)
+|..|+...+..+-.. +.++.+.+|..|....-|.=+.+
T Consensus 98 lC~~C~sPdT~L~k~~--~~r~~~l~C~ACGa~~~V~~~~k 136 (170)
T 2g2k_A 98 LCPECENPETDLHVNP--KKQTIGNSCKACGYRGMLDTHHK 136 (170)
T ss_dssp SCTTTSSSCEEEEEET--TTTEEEEEETTTCCCCCSCSSSS
T ss_pred ECCCCCCCccEEEEec--CCCEEEEEccccCCccccccccc
Confidence 5999999988776411 47999999999999877754434
No 106
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=21.07 E-value=34 Score=20.02 Aligned_cols=10 Identities=30% Similarity=1.122 Sum_probs=8.0
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 7 p~~C~~C~k~ 16 (48)
T 3iuf_A 7 PYACDICGKR 16 (48)
T ss_dssp CEECTTTCCE
T ss_pred CEECCCcCcc
Confidence 3899999965
No 107
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=26.43 E-value=20 Score=17.73 Aligned_cols=10 Identities=20% Similarity=0.813 Sum_probs=7.8
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 3 ~~~C~~C~k~ 12 (30)
T 2lvr_A 3 PYVCIHCQRQ 12 (30)
Confidence 4889999865
No 108
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=20.89 E-value=19 Score=20.25 Aligned_cols=10 Identities=30% Similarity=0.879 Sum_probs=8.3
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 12 ~~~C~~C~k~ 21 (46)
T 2em9_A 12 PYNCKECGKS 21 (46)
T ss_dssp SEECSSSCCE
T ss_pred CeECCccccc
Confidence 4899999965
No 109
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.87 E-value=35 Score=18.66 Aligned_cols=10 Identities=30% Similarity=1.042 Sum_probs=8.4
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+.+
T Consensus 11 ~~~C~~C~k~ 20 (42)
T 2en2_A 11 PYKCETCGAR 20 (42)
T ss_dssp SEECTTTCCE
T ss_pred CEeCCCcChh
Confidence 3999999975
No 110
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=20.74 E-value=24 Score=31.74 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=19.3
Q ss_pred eccccCcCCCCCHHHHHHHcCCceee
Q 029824 141 ADHLGWFGEPGSIEDFLAARGEEVKK 166 (187)
Q Consensus 141 ADnLgwF~e~~nIEdil~~kGe~V~k 166 (187)
.|||.||+ |+|+|.++|.+-++.
T Consensus 246 ~DHld~~g---s~e~ia~aK~~i~~~ 268 (535)
T 2wtz_A 246 RDHLDFHP---SMADYFEAKASLFDP 268 (535)
T ss_dssp SCCTTTSS---SHHHHHHHHHTTTCT
T ss_pred hHHhhhcC---CHHHHHHHHHHHhcc
Confidence 48898886 799999999987763
No 111
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=20.31 E-value=14 Score=29.02 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=21.4
Q ss_pred ecCCCCCccccccChhhccCceEEEEcCCCCcceee
Q 029824 105 TCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLI 140 (187)
Q Consensus 105 TC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLI 140 (187)
+|..|+...+..+- ++++.+.+|..|....-+
T Consensus 105 lC~~C~sPdT~l~k----~~r~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 105 ECSTCKSLDTILKK----EKKSWYIVCLACGAQTPV 136 (139)
T ss_dssp SCCSSSSSCCCSCS----SCSTTTSSCCC-------
T ss_pred ECCCCCCcCcEEEE----eCCeEEEEecCCCCCCcc
Confidence 69999999887775 468999999999876544
No 112
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.31 E-value=37 Score=19.08 Aligned_cols=10 Identities=40% Similarity=1.052 Sum_probs=8.4
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 12 ~~~C~~C~k~ 21 (46)
T 2eoy_A 12 CFKCNKCEKT 21 (46)
T ss_dssp CEECSSSCCE
T ss_pred CEECcCCCCc
Confidence 4999999965
No 113
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=20.30 E-value=37 Score=19.13 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=8.4
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+.+
T Consensus 12 ~~~C~~C~k~ 21 (46)
T 2emj_A 12 PFECAECGKS 21 (46)
T ss_dssp SEECSSSSCE
T ss_pred CEECCCCCcc
Confidence 4999999965
No 114
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.29 E-value=38 Score=19.07 Aligned_cols=10 Identities=20% Similarity=0.757 Sum_probs=8.4
Q ss_pred EEecCCCCCc
Q 029824 103 IFTCKVCETR 112 (187)
Q Consensus 103 ~FTC~~C~tR 112 (187)
.|.|..|+..
T Consensus 12 ~~~C~~C~k~ 21 (46)
T 2ytp_A 12 HYECSECGKA 21 (46)
T ss_dssp CEECSSSCCE
T ss_pred CeECCcCCcc
Confidence 4999999975
Done!