BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029825
MKRPMPWGDQVDVISSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMY
QEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHK
PLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITLNSPKSPDSTK
SSSPQVL

High Scoring Gene Products

Symbol, full name Information P value
RDM1
AT3G22680 		protein from Arabidopsis thaliana 1.6e-45

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029825
        (187 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2094399 - symbol:RDM1 "AT3G22680" species:3702...   478  1.6e-45   1


>TAIR|locus:2094399 [details] [associations]
            symbol:RDM1 "AT3G22680" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0006306 "DNA methylation"
            evidence=IGI;RCA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0043621 "protein self-association" evidence=IDA] [GO:0044030
            "regulation of DNA methylation" evidence=IMP] [GO:0070918
            "production of small RNA involved in gene silencing by RNA"
            evidence=IMP] [GO:0031047 "gene silencing by RNA" evidence=RCA]
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005654
            GO:GO:0003677 GO:GO:0043621 GO:GO:0006306 GO:GO:0044030
            EMBL:AB022223 EMBL:BT006390 IPI:IPI00533141 RefSeq:NP_188907.2
            UniGene:At.6299 PDB:1VK5 PDB:2Q3T PDB:3GAN PDBsum:1VK5 PDBsum:2Q3T
            PDBsum:3GAN ProteinModelPortal:Q9LUJ3 SMR:Q9LUJ3 DIP:DIP-59278N
            STRING:Q9LUJ3 PaxDb:Q9LUJ3 DNASU:821839 EnsemblPlants:AT3G22680.1
            GeneID:821839 KEGG:ath:AT3G22680 TAIR:At3g22680 eggNOG:NOG262189
            HOGENOM:HOG000090795 InParanoid:Q9LUJ3 OMA:HYLTNIL PhylomeDB:Q9LUJ3
            ProtClustDB:CLSN2680071 EvolutionaryTrace:Q9LUJ3
            Genevestigator:Q9LUJ3 GermOnline:AT3G22680 GO:GO:0070918
            InterPro:IPR015270 Pfam:PF09187 SUPFAM:SSF109920 Uniprot:Q9LUJ3
        Length = 163

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 84/129 (65%), Positives = 105/129 (81%)

Query:    40 IDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHY 99
             +D   +++  EGSL RRAEMYQ+YMKQ+PIPT R S+IPFTSWVGL  S+KQLY QPLHY
Sbjct:    31 LDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHY 90

Query:   100 LTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDP 159
             LTN+ L++WDQ RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H+A LW SDP
Sbjct:    91 LTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDP 150

Query:   160 MHYVFIDSI 168
             M++ FID I
Sbjct:   151 MYHSFIDPI 159


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      187       150   0.00087  104 3  11 22  0.46    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  168 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.36u 0.23s 15.59t   Elapsed:  00:00:01
  Total cpu time:  15.36u 0.23s 15.59t   Elapsed:  00:00:01
  Start:  Tue May 21 00:39:58 2013   End:  Tue May 21 00:39:59 2013

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