BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029825
         (187 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LUJ3|RDM1_ARATH Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1
          Length = 163

 Score =  189 bits (479), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 115/154 (74%), Gaps = 6/154 (3%)

Query: 15  SSDDSASDGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRS 74
           S D  +SD DA+   DG        +D   +++  EGSL RRAEMYQ+YMKQ+PIPT R 
Sbjct: 12  SGDSGSSDVDAEIS-DGFSP-----LDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNRG 65

Query: 75  SIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEAT 134
           S+IPFTSWVGL  S+KQLY QPLHYLTN+ L++WDQ RFGT+ E + LDS++HP KAEAT
Sbjct: 66  SLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEAT 125

Query: 135 VWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168
           +WL+EE+HRLT  H H+A LW SDPM++ FID I
Sbjct: 126 IWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPI 159


>sp|Q9XSK7|HDGF_BOVIN Hepatoma-derived growth factor OS=Bos taurus GN=HDGF PE=2 SV=1
          Length = 239

 Score = 33.1 bits (74), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 20  ASDGDADNGLDGRQSSND---MTIDQPTKELTSEGSLFRRA 57
           A++GD D   +   SS++   + ID+PTKE   +G+L RRA
Sbjct: 118 ATEGDGDKKGNAEGSSDEEGKLVIDEPTKEKNEKGALKRRA 158


>sp|Q89A95|DPO3X_BUCBP DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp.
           Baizongia pistaciae (strain Bp) GN=dnaX PE=3 SV=1
          Length = 370

 Score = 32.0 bits (71), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 112 RFGTEDEHKPLDSLVH-PCKAEATVWLIEEVHRLTS-CHHHLAKLWLSDPMHYVFIDSIT 169
           R   ED  + LD++ + P K    ++LI+EVH L+    + L K     P H  FI + T
Sbjct: 98  RTKVEDMKELLDNIRYLPSKGRFKIYLIDEVHMLSRYSFNFLLKNIEEPPQHIKFILATT 157

Query: 170 LNSPKSPDSTKSSSPQ 185
            N  K PD+  S   Q
Sbjct: 158 -NLEKIPDTILSRCLQ 172


>sp|Q6GIN2|UVRA_STAAR UvrABC system protein A OS=Staphylococcus aureus (strain MRSA252)
           GN=uvrA PE=3 SV=1
          Length = 948

 Score = 32.0 bits (71), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 58  EMYQEYMKQLPIPT------QRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQ 110
           EM  +YM +LP  T       R ++  +   + +G  ++    Q L+Y  NI+L + DQ
Sbjct: 395 EMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNINLSEQDQ 453


>sp|Q12674|ATC8_YEAST Probable phospholipid-transporting ATPase DNF3 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=DNF3 PE=1
           SV=1
          Length = 1656

 Score = 31.6 bits (70), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 99  YLTNIHLKQWDQLRFG-----TEDEHKPLDSLVHPCKAEATVWLIE 139
           Y  +IH K+W++LR G     T+D+  P D L+  C  E +   +E
Sbjct: 290 YNVHIHQKKWEKLRVGDFVLLTQDDWVPADLLLLTCDGENSECFVE 335


>sp|A2QAX7|DRS1_ASPNC ATP-dependent RNA helicase drs1 OS=Aspergillus niger (strain CBS
           513.88 / FGSC A1513) GN=drs1 PE=3 SV=1
          Length = 824

 Score = 30.4 bits (67), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 15/79 (18%)

Query: 13  VISSDDSASDGDAD--NGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPI- 69
           V+  DD ASD D+D  + +D  +         P +E TSE ++      +QE+    PI 
Sbjct: 262 VMHPDDIASDRDSDEESQVDAEEEEKRKAFFAPEEEKTSESAMADAKRSFQEFNLSRPIL 321

Query: 70  ------------PTQRSSI 76
                       P QR +I
Sbjct: 322 RGLAGVNFSNPTPIQRKTI 340


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,940,122
Number of Sequences: 539616
Number of extensions: 2939681
Number of successful extensions: 8255
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8202
Number of HSP's gapped (non-prelim): 64
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)