Query 029825
Match_columns 187
No_of_seqs 21 out of 23
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 04:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09187 DUF1950: Domain of un 100.0 2.2E-89 4.8E-94 535.3 9.7 118 53-170 1-118 (119)
2 KOG4389 Acetylcholinesterase/B 52.5 3.5 7.7E-05 40.5 -0.8 92 71-162 452-591 (601)
3 smart00506 A1pp Appr-1"-p proc 42.2 25 0.00054 25.3 2.4 43 83-127 29-76 (133)
4 KOG0655 G1/S-specific cyclin E 40.8 62 0.0013 30.9 5.3 97 36-153 68-170 (408)
5 PF14111 DUF4283: Domain of un 37.3 22 0.00049 26.2 1.6 18 90-107 107-124 (153)
6 KOG3878 Protein involved in ma 27.4 36 0.00079 32.6 1.6 19 50-68 202-222 (469)
7 PF11616 EZH2_WD-Binding: WD r 25.9 43 0.00094 21.6 1.3 17 99-115 13-29 (30)
8 smart00755 Grip golgin-97, Ran 25.6 43 0.00092 22.6 1.3 11 97-107 4-14 (46)
9 cd08309 Death_IRAK Death domai 24.4 49 0.0011 24.4 1.5 33 79-111 23-71 (95)
10 COG2020 STE14 Putative protein 24.3 64 0.0014 26.1 2.3 19 50-68 160-179 (187)
11 PF00531 Death: Death domain; 22.6 1.5E+02 0.0033 19.6 3.5 32 79-111 12-53 (83)
12 PF05066 HARE-HTH: HB1, ASXL, 22.2 57 0.0012 22.2 1.4 28 80-107 1-30 (72)
13 PF01465 GRIP: GRIP domain; I 22.0 56 0.0012 21.6 1.3 12 96-107 4-15 (46)
14 cd05030 calgranulins Calgranul 20.2 3.3E+02 0.0071 19.3 5.7 58 50-114 4-66 (88)
No 1
>PF09187 DUF1950: Domain of unknown function(DUF1950); InterPro: IPR015270 Members of this family are a set of functionally uncharacterised hypothetical eukaryotic proteins []. ; PDB: 2Q3T_A 1VK5_A 3GAN_A.
Probab=100.00 E-value=2.2e-89 Score=535.31 Aligned_cols=118 Identities=76% Similarity=1.303 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCccccchhhhhHHHHHHHhcCchHHHHHHHHhhhhhhccCCCCCCCCCccccCccchh
Q 029825 53 LFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAE 132 (187)
Q Consensus 53 liRrAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~SiKqlYgQPLHYLTnillkqWDq~RiGs~dE~kpLd~IIhP~kAE 132 (187)
|||||||||+||||||||++|||+|||+||+|||||||||||||||||||+|||||||+||||+||+||||+||||||||
T Consensus 1 liRrAemYQ~yMk~iPIP~~rgs~Ip~~sW~gL~~SiKqlYgQPLHYLTn~llkqWDq~RiGs~dE~kpLd~IIhp~kAe 80 (119)
T PF09187_consen 1 LIRRAEMYQDYMKQIPIPSSRGSVIPFTSWMGLGRSIKQLYGQPLHYLTNILLKQWDQSRIGSEDEHKPLDAIIHPCKAE 80 (119)
T ss_dssp THHHHHHHHHHHHTS---SSSSS----SSHHHHHHHHHHHHT----HHHHHHHHHHHHTTTT-SS----GGGTS-HHHHH
T ss_pred CcchHHHHHHHHHcCCCCCCCCCccccchHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccCCccccCcHHHhcChhhHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhccchHHHHHHHhhCCcccccccccCC
Q 029825 133 ATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSITL 170 (187)
Q Consensus 133 atIW~~EevHR~tsS~~hlA~LW~~DPmy~~fiD~if~ 170 (187)
||||+||||||+||||+|||+||++|||||+|||+|||
T Consensus 81 atIW~vEevHR~tsS~~hlA~LW~~DPmyh~fvD~ifp 118 (119)
T PF09187_consen 81 ATIWLVEEVHRQTSSHQHLAKLWLSDPMYHAFVDSIFP 118 (119)
T ss_dssp HHHHHHHHHHHHS--HHHHHHHHHT-TTGGGGS--S--
T ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCchhhhhccccCC
Confidence 99999999999999999999999999999999999998
No 2
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=52.46 E-value=3.5 Score=40.55 Aligned_cols=92 Identities=22% Similarity=0.397 Sum_probs=62.5
Q ss_pred CCCCCccccchhhhh--HHHHHHHhcCchHH----------HHHHHHhhhhh-hccCCCCCC------------------
Q 029825 71 TQRSSIIPFTSWVGL--GNSIKQLYEQPLHY----------LTNIHLKQWDQ-LRFGTEDEH------------------ 119 (187)
Q Consensus 71 ~~r~s~Ipf~sW~gL--g~SiKqlYgQPLHY----------LTnillkqWDq-~RiGs~dE~------------------ 119 (187)
+||.|--|.--|||. |--|+=.+||||+| |.+++++-|-. -+-|.-+|.
T Consensus 452 thrsSa~pWP~WmGVmHGYEIEyvFG~PL~~s~nYt~~E~~ls~rim~~WanFAktG~P~~~~~~~~~WP~yn~~~~~ym 531 (601)
T KOG4389|consen 452 THRSSANPWPKWMGVMHGYEIEYVFGIPLNYSRNYTKEEKILSRRIMRYWANFAKTGDPNERGNPKPQWPPYNKTEQKYM 531 (601)
T ss_pred eccccCCCchhhhcCcccceEEEEecccccccccccHHHHHHHHHHHHHHHHHhhcCCCccCCCCccCCCCCCccccEEE
Confidence 678999999999997 78899999999998 66788888853 233433333
Q ss_pred ----CC-CccccCccchhhhHHH------------HHHHHhhccchHHHHHHHhhCCccc
Q 029825 120 ----KP-LDSLVHPCKAEATVWL------------IEEVHRLTSCHHHLAKLWLSDPMHY 162 (187)
Q Consensus 120 ----kp-Ld~IIhP~kAEatIW~------------~EevHR~tsS~~hlA~LW~~DPmy~ 162 (187)
.+ +..|-.|.++|...|- ++|--|..+|..|.-+.|+.+=.|+
T Consensus 532 ~l~t~s~~ri~~~~~~~~C~fW~~~lpk~~~~ta~~~e~~~~s~s~~~~~s~y~~~~~~~ 591 (601)
T KOG4389|consen 532 NLDTGSLLRIIRGLRAQECAFWNRFLPKVLEATANLCEAYSKSKSTLDRWSSYITLLKYQ 591 (601)
T ss_pred EeccCcchhhcccchhhhhhHHHhhhhHHHHhhccccchhhcccccchHHHHHHHHHHHH
Confidence 12 3334445666777774 2455566677777766666654444
No 3
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=42.20 E-value=25 Score=25.26 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=27.9
Q ss_pred hhhHHHHHHHhcCchHHHHHHHHhhhh-hhccCCC----CCCCCCccccC
Q 029825 83 VGLGNSIKQLYEQPLHYLTNIHLKQWD-QLRFGTE----DEHKPLDSLVH 127 (187)
Q Consensus 83 ~gLg~SiKqlYgQPLHYLTnillkqWD-q~RiGs~----dE~kpLd~IIh 127 (187)
.|++++|++.+|+.+ +.+.+.+.+. ..+.|+- -...+-.-|||
T Consensus 29 ~g~a~~i~~~~g~~~--~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~Iih 76 (133)
T smart00506 29 GGVAGAIARAAGKAL--EKEAFRKLAGGECPVGTAVVTEGGNLPAKYVIH 76 (133)
T ss_pred CcHHHHHHHHhChHH--HHHHHHHhcCCCcCCccEEEecCCCCCCCEEEE
Confidence 489999999999998 5555555553 4566652 12233446777
No 4
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning]
Probab=40.78 E-value=62 Score=30.90 Aligned_cols=97 Identities=27% Similarity=0.365 Sum_probs=58.0
Q ss_pred CccccCCCCcccCchhhHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhHHHHHHHhcCchHHHHHHHHhhhhhhccCC
Q 029825 36 NDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGT 115 (187)
Q Consensus 36 n~~~i~~~~~~~~~~~~liRrAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~SiKqlYgQPLHYLTnillkqWDq~RiGs 115 (187)
.-..++.+.++...+|..+-.--| ||..=|-.+|+|..|.-+|..-.+--+-+...-=-||..+.+-.
T Consensus 68 p~~~~~~~d~~~~~sdf~v~~r~~----~k~~v~apsr~splp~lswgn~~eVW~lM~kkee~~l~~~~~l~-------- 135 (408)
T KOG0655|consen 68 PCESIDTPDKEVQNSDFAVTKRLM----DKPMVIAPSRLSPLPCLSWGNSKEVWLLMLKKEERYLRDKHFLE-------- 135 (408)
T ss_pred cCcccCCCCcccCccccccccccc----CcccccccccCCCCccccccCHHHHHHHHHccchhhhhhhHHHh--------
Confidence 567788888888776655433222 78888899999999999996655443333332223443332221
Q ss_pred CCCCCCCccccCc-cchhhhHHHHH-----HHHhhccchHHHHH
Q 029825 116 EDEHKPLDSLVHP-CKAEATVWLIE-----EVHRLTSCHHHLAK 153 (187)
Q Consensus 116 ~dE~kpLd~IIhP-~kAEatIW~~E-----evHR~tsS~~hlA~ 153 (187)
.+.-..| .+|=-.=|++| -.||-| ||||-
T Consensus 136 ------qHpdlqp~mRaILlDWlmEVCEvykLHRET---FyLAv 170 (408)
T KOG0655|consen 136 ------QHPDLQPQMRAILLDWLMEVCEVYKLHRET---FYLAV 170 (408)
T ss_pred ------hCCCCCHHHHHHHHHHHHHHHHHHHHhhhH---HHHHH
Confidence 1111222 24445569987 357754 89884
No 5
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=37.34 E-value=22 Score=26.17 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=16.1
Q ss_pred HHHhcCchHHHHHHHHhh
Q 029825 90 KQLYEQPLHYLTNIHLKQ 107 (187)
Q Consensus 90 KqlYgQPLHYLTnillkq 107 (187)
=|+||-|+||.+...+++
T Consensus 107 Vri~glP~~~~~~~~~~~ 124 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKA 124 (153)
T ss_pred hhhccCCHHHhhhHHHHH
Confidence 389999999999988887
No 6
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.35 E-value=36 Score=32.61 Aligned_cols=19 Identities=42% Similarity=0.740 Sum_probs=15.3
Q ss_pred hhhHHHH--HHHHHHHHhcCC
Q 029825 50 EGSLFRR--AEMYQEYMKQLP 68 (187)
Q Consensus 50 ~~~liRr--AemYQ~yMkqiP 68 (187)
..+|||. -+-||+||.|+=
T Consensus 202 Q~vLIrQLQeqHYqQYMqQly 222 (469)
T KOG3878|consen 202 QAVLIRQLQEQHYQQYMQQLY 222 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 4579994 788999998864
No 7
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=25.93 E-value=43 Score=21.64 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=10.4
Q ss_pred HHHHHHHhhhhhhccCC
Q 029825 99 YLTNIHLKQWDQLRFGT 115 (187)
Q Consensus 99 YLTnillkqWDq~RiGs 115 (187)
==|++|-.+|.++||-+
T Consensus 13 e~t~iLN~eWk~lRiQp 29 (30)
T PF11616_consen 13 ERTDILNEEWKKLRIQP 29 (30)
T ss_dssp HHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhccCC
Confidence 34899999999999853
No 8
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=25.60 E-value=43 Score=22.60 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=9.3
Q ss_pred hHHHHHHHHhh
Q 029825 97 LHYLTNIHLKQ 107 (187)
Q Consensus 97 LHYLTnillkq 107 (187)
+-||.|+|+|=
T Consensus 4 ~eYLKNVll~f 14 (46)
T smart00755 4 FEYLKNVLLQF 14 (46)
T ss_pred HHHHHHHHHHH
Confidence 56999999985
No 9
>cd08309 Death_IRAK Death domain of Interleukin-1 Receptor-Associated Kinases. Death Domains (DDs) found in Interleukin-1 (IL-1) Receptor-Associated Kinases (IRAK1-4) and similar proteins. IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. All four types are involved in signal transduction involving IL-1 and IL-18 receptors, Toll-like receptors, nuclear factor-kappaB, and mitogen-activated protein kinase pathways. IRAK1 and IRAK4 are active kinases while IRAK2 and IRAK-M (also called IRAK3) are inactive. In general, IRAKs are expressed ubiquitously, except for IRAK-M which is detected only in macrophages. The insect homologs, Pelle and Tube, are important components of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and also in the innate immune response. Most members have an N-terminal DD followed by a kinase domain. In general, DDs are protein-protein interaction domains found in a variety of domain a
Probab=24.40 E-value=49 Score=24.42 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=23.5
Q ss_pred cchhhhhHHHHHH------HhcCchHHH----------HHHHHhhhhhh
Q 029825 79 FTSWVGLGNSIKQ------LYEQPLHYL----------TNIHLKQWDQL 111 (187)
Q Consensus 79 f~sW~gLg~SiKq------lYgQPLHYL----------TnillkqWDq~ 111 (187)
-..|+.||..|.+ .+.+=+.++ |+.||..|.+.
T Consensus 23 ~~~W~~LA~~i~~~~~~~~~~~~~i~~~e~~~~~g~SPt~~LL~~W~~~ 71 (95)
T cd08309 23 LKGWRQLASLIPKGLGGPRYDLTDVRQIESMKQRGRSPTRELLWDWGTQ 71 (95)
T ss_pred cCChHHHHHHhccccccCCcCHHHHHHHHHHhhcCCChHHHHHHHHHhc
Confidence 5789999999882 333345555 88999999554
No 10
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.31 E-value=64 Score=26.13 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=13.6
Q ss_pred hhhHHHH-HHHHHHHHhcCC
Q 029825 50 EGSLFRR-AEMYQEYMKQLP 68 (187)
Q Consensus 50 ~~~liRr-AemYQ~yMkqiP 68 (187)
|..|.++ -+.|.+|||+.|
T Consensus 160 Er~L~~~fg~~Y~~Y~~rV~ 179 (187)
T COG2020 160 ERYLRAEFGDEYREYRKRVP 179 (187)
T ss_pred HHHHHHHhhHHHHHHHHhCC
Confidence 3344444 677999999987
No 11
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=22.62 E-value=1.5e+02 Score=19.61 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=24.7
Q ss_pred cchhhhhHHH----------HHHHhcCchHHHHHHHHhhhhhh
Q 029825 79 FTSWVGLGNS----------IKQLYEQPLHYLTNIHLKQWDQL 111 (187)
Q Consensus 79 f~sW~gLg~S----------iKqlYgQPLHYLTnillkqWDq~ 111 (187)
...|..||+. |++-|+. ++-=+..+|..|-+.
T Consensus 12 ~~~Wk~La~~Lg~~~~~i~~i~~~~~~-~~~~~~~~L~~W~~~ 53 (83)
T PF00531_consen 12 GSDWKRLARKLGLSESEIENIEEENPD-LREQTYEMLQRWRQR 53 (83)
T ss_dssp STCHHHHHHHTTS-HHHHHHHHHHSTS-HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhCcCHHHHHHHHHhCCC-hHHHHHHHHHHHHHh
Confidence 4578888864 5666776 777888899999887
No 12
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=22.16 E-value=57 Score=22.20 Aligned_cols=28 Identities=4% Similarity=0.122 Sum_probs=19.7
Q ss_pred chhhhhHHHHHHHhcCchHH--HHHHHHhh
Q 029825 80 TSWVGLGNSIKQLYEQPLHY--LTNIHLKQ 107 (187)
Q Consensus 80 ~sW~gLg~SiKqlYgQPLHY--LTnillkq 107 (187)
+||..++..+=+-.|+|+|| +++.++++
T Consensus 1 mt~~eaa~~vL~~~~~pm~~~eI~~~i~~~ 30 (72)
T PF05066_consen 1 MTFKEAAYEVLEEAGRPMTFKEIWEEIQER 30 (72)
T ss_dssp S-HHHHHHHHHHHH-S-EEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCcCHHHHHHHHHHh
Confidence 47889999999999999999 55655543
No 13
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=22.02 E-value=56 Score=21.63 Aligned_cols=12 Identities=42% Similarity=0.647 Sum_probs=9.8
Q ss_pred chHHHHHHHHhh
Q 029825 96 PLHYLTNIHLKQ 107 (187)
Q Consensus 96 PLHYLTnillkq 107 (187)
-+-||.|+++|=
T Consensus 4 ~~eYLKNvl~~f 15 (46)
T PF01465_consen 4 NLEYLKNVLLQF 15 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 356999999985
No 14
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=20.21 E-value=3.3e+02 Score=19.28 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhHHHHHHHhcCch-----HHHHHHHHhhhhhhccC
Q 029825 50 EGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPL-----HYLTNIHLKQWDQLRFG 114 (187)
Q Consensus 50 ~~~liRrAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~SiKqlYgQPL-----HYLTnillkqWDq~RiG 114 (187)
|.++..-.++|++|=. +....-+.++..|..-++..+|.++ -=-.+.++++-|...-|
T Consensus 4 e~~i~~~~~~f~~y~~-------~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG 66 (88)
T cd05030 4 EKAIETIINVFHQYSV-------RKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDG 66 (88)
T ss_pred HHHHHHHHHHHHHHhc-------cCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCC
Confidence 6778888999999953 3334446789999999988777665 23345566655544433
Done!