Query 029825
Match_columns 187
No_of_seqs 21 out of 23
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 06:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk5_A Expressed protein; stru 100.0 3.6E-98 1E-102 603.7 11.6 152 12-171 2-156 (157)
2 1m1l_A Suppressor of fused; ge 48.9 2.3 8E-05 35.1 -1.1 39 79-126 5-46 (236)
3 1bby_A RAP30; average structur 31.0 30 0.001 24.3 2.4 28 87-114 26-53 (69)
4 2k2b_A Degenerin MEC-4; membra 29.1 17 0.00058 27.9 0.9 17 86-102 17-33 (111)
5 1ofu_X SULA, hypothetical prot 23.2 37 0.0012 25.1 1.8 28 124-151 61-88 (119)
6 1oft_A SULA, hypothetical prot 21.6 39 0.0013 26.7 1.7 28 124-151 103-130 (161)
7 1dp7_P MHC class II transcript 21.0 47 0.0016 23.4 1.9 42 49-95 12-53 (76)
8 4a2n_B Isoprenylcysteine carbo 20.4 56 0.0019 25.4 2.4 19 50-68 167-187 (194)
9 2d3o_1 Trigger factor, TF; rib 19.9 2.4E+02 0.0082 19.9 5.6 52 50-108 21-74 (112)
10 2ib1_A Death domain containing 18.5 1.1E+02 0.0038 21.5 3.5 33 80-115 19-58 (91)
No 1
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=100.00 E-value=3.6e-98 Score=603.65 Aligned_cols=152 Identities=59% Similarity=1.020 Sum_probs=120.4
Q ss_pred ccccCCCCCC---CCCCCCCCCCCCCCCccccCCCCcccCchhhHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhHHH
Q 029825 12 DVISSDDSAS---DGDADNGLDGRQSSNDMTIDQPTKELTSEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNS 88 (187)
Q Consensus 12 DviSSD~SsS---D~Ea~nGk~~~~~~n~~~i~~~~~~~~~~~~liRrAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~S 88 (187)
||||||||+| |+|++|| +|+||||.|++++||+|||||||||+||||||||++||++|||+||+|||||
T Consensus 2 dv~sS~~s~Ssd~d~e~~~g--------~~~i~~s~k~~~~e~~liRrAEmYQ~YMK~iPIP~~~~s~Ipf~sW~gL~~S 73 (157)
T 1vk5_A 2 ELRPSGDSGSSDVDAEISDG--------FSPLDTSHRDVADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSIS 73 (157)
T ss_dssp ------------------------------------------CTTHHHHHHHHHHHHTSCCCSSCCSCCCCSSHHHHHHH
T ss_pred CcccCCCCccCCccccccCC--------cccCCCcccccCcchhhhhHHHHHHHHHHhCCCCcccCCcccchhHHHHHHH
Confidence 7889999887 8899998 4999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCchHHHHHHHHhhhhhhccCCCCCCCCCccccCccchhhhHHHHHHHHhhccchHHHHHHHhhCCccccccccc
Q 029825 89 IKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFIDSI 168 (187)
Q Consensus 89 iKqlYgQPLHYLTnillkqWDq~RiGs~dE~kpLd~IIhP~kAEatIW~~EevHR~tsS~~hlA~LW~~DPmy~~fiD~i 168 (187)
||||||||||||||+|||||||+||||+||+||||+||||||||||||+||||||+||||+|||+||++|||||+|||+|
T Consensus 74 iKQlY~QPLHYLTN~LLkqWDQ~RiGs~dE~kpLd~IIhP~kAeatIW~vEE~HR~tsS~~hla~LW~sDPmyhafiD~i 153 (157)
T 1vk5_A 74 MKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPI 153 (157)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHTTTTCSSCCCCGGGTSCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHTCTTGGGGSCCC
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhcCCccccCchhhhccchhhhhHHHHHHHHHhhcCChHHHHHHHhcCchhhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 029825 169 TLN 171 (187)
Q Consensus 169 f~~ 171 (187)
||.
T Consensus 154 fp~ 156 (157)
T 1vk5_A 154 FPE 156 (157)
T ss_dssp CCC
T ss_pred CCC
Confidence 985
No 2
>1m1l_A Suppressor of fused; gene regulation, hedgehog signaling, signal transduction, signaling protein; 2.65A {Homo sapiens} SCOP: d.260.1.1
Probab=48.90 E-value=2.3 Score=35.13 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=31.0
Q ss_pred cchhhhhHHHHHHHhc-C--chHHHHHHHHhhhhhhccCCCCCCCCCcccc
Q 029825 79 FTSWVGLGNSIKQLYE-Q--PLHYLTNIHLKQWDQLRFGTEDEHKPLDSLV 126 (187)
Q Consensus 79 f~sW~gLg~SiKqlYg-Q--PLHYLTnillkqWDq~RiGs~dE~kpLd~II 126 (187)
...|..+-..++++|+ | |+||-|.+ |- ++|-.| |||.|.
T Consensus 5 ~~g~~ai~~~~~~~y~~q~~p~~~~~~i--~~----~lGG~d---pLD~is 46 (236)
T 1m1l_A 5 PPGLHAIYGECRRLYPDQPNPLQVTAIV--KY----WLGGPD---PLDYVS 46 (236)
T ss_dssp CHHHHHHHHHHHHHCTTCSSCEEEECSS--CG----GGTCSC---SCSEEE
T ss_pred chhHHHHHHHHHHHcCCCCCCceecccc--ce----ecCCCC---CCCcEE
Confidence 4579999999999996 6 99999955 43 588855 898874
No 3
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=30.97 E-value=30 Score=24.27 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=20.5
Q ss_pred HHHHHHhcCchHHHHHHHHhhhhhhccC
Q 029825 87 NSIKQLYEQPLHYLTNIHLKQWDQLRFG 114 (187)
Q Consensus 87 ~SiKqlYgQPLHYLTnillkqWDq~RiG 114 (187)
+.+++.-+||..||.-+|-+==+..|-|
T Consensus 26 K~L~~~t~QP~~yLKeiL~~Ia~~~k~g 53 (69)
T 1bby_A 26 KDLVDITKQPVVYLKEILKEIGVQNVKG 53 (69)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHCCCBCCT
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHcCC
Confidence 5567888999999999986654444444
No 4
>2k2b_A Degenerin MEC-4; membrane associated, minimal constraint, detergent solubilized, glycoprotein, ION transport, ionic channel; NMR {Caenorhabditis elegans}
Probab=29.11 E-value=17 Score=27.86 Aligned_cols=17 Identities=35% Similarity=0.743 Sum_probs=14.0
Q ss_pred HHHHHHHhcCchHHHHH
Q 029825 86 GNSIKQLYEQPLHYLTN 102 (187)
Q Consensus 86 g~SiKqlYgQPLHYLTn 102 (187)
..-|.|+||-||-||..
T Consensus 17 seymsqvygdplaylqe 33 (111)
T 2k2b_A 17 SEYMSQVYGDPLAYLQE 33 (111)
T ss_dssp HHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHhcChHHHHHH
Confidence 34688999999999954
No 5
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=23.25 E-value=37 Score=25.08 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=22.4
Q ss_pred cccCccchhhhHHHHHHHHhhccchHHH
Q 029825 124 SLVHPCKAEATVWLIEEVHRLTSCHHHL 151 (187)
Q Consensus 124 ~IIhP~kAEatIW~~EevHR~tsS~~hl 151 (187)
.+|+|.+.+.++|.+||.=|..+++-=|
T Consensus 61 l~v~~~~~~d~lwa~EqaLrsg~~~aVl 88 (119)
T 1ofu_X 61 LLLQAKDNAAALALSCEALRLGRSHTVV 88 (119)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCcHHHHHHHHHHHhcCCccEEE
Confidence 3689999999999999998876665433
No 6
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=21.59 E-value=39 Score=26.67 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=22.7
Q ss_pred cccCccchhhhHHHHHHHHhhccchHHH
Q 029825 124 SLVHPCKAEATVWLIEEVHRLTSCHHHL 151 (187)
Q Consensus 124 ~IIhP~kAEatIW~~EevHR~tsS~~hl 151 (187)
-+|++.+.+.++|.+||.=|..+++-=|
T Consensus 103 l~v~~~~~~daLwa~EqALrsG~~~aVl 130 (161)
T 1oft_A 103 LLLQAKDNAAALALSCEALRLGRSHTVV 130 (161)
T ss_dssp EEECCSSTTHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCChHHHHHHHHHHHhcCCccEEE
Confidence 3689999999999999998877665433
No 7
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=21.03 E-value=47 Score=23.36 Aligned_cols=42 Identities=21% Similarity=0.487 Sum_probs=29.6
Q ss_pred chhhHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhHHHHHHHhcC
Q 029825 49 SEGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQ 95 (187)
Q Consensus 49 ~~~~liRrAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~SiKqlYgQ 95 (187)
.+++-+.|.++|.+|+..= ....+-| .+...+||.|+++|..
T Consensus 12 ~~~~svpR~~vY~~Y~~~C----~~~~~~p-l~~a~FGK~ir~~FP~ 53 (76)
T 1dp7_P 12 AEGVSLPRSTLYNHYLLHS----QEQKLEP-VNAASFGKLIRSVFMG 53 (76)
T ss_dssp EEEEEEEHHHHHHHHHHHH----HHTTCCC-CCHHHHHHHHHHHSTT
T ss_pred CCCceechHHHHHHHHHHH----HhcCCcc-CCHHHHHHHHHHHCCC
Confidence 3566788999999998421 0012233 6889999999999865
No 8
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=20.41 E-value=56 Score=25.44 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=13.4
Q ss_pred hhhHHH-H-HHHHHHHHhcCC
Q 029825 50 EGSLFR-R-AEMYQEYMKQLP 68 (187)
Q Consensus 50 ~~~liR-r-AemYQ~yMkqiP 68 (187)
|+..++ + -+.|++|+++.|
T Consensus 167 EE~~L~~~fG~~Y~~Y~~rv~ 187 (194)
T 4a2n_B 167 EEELLIEEFGDEYIEYMGKTG 187 (194)
T ss_dssp HHHHHHHHHTHHHHHHHHHCB
T ss_pred HHHHHHHHhCHHHHHHHHhCC
Confidence 444444 3 378999999987
No 9
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=19.92 E-value=2.4e+02 Score=19.91 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhHHHHHHHhc-Cc-hHHHHHHHHhhh
Q 029825 50 EGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYE-QP-LHYLTNIHLKQW 108 (187)
Q Consensus 50 ~~~liRrAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~SiKqlYg-QP-LHYLTnillkqW 108 (187)
++.-=...+.|+++-|++-||-=|-.-.|. .-|+|.|| .- +--..|.|+.+-
T Consensus 21 ~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~-------~vi~k~yG~~~v~~ea~~~~i~~~ 74 (112)
T 2d3o_1 21 AEVNRAYDQVWAGLARDVRVPGFRPGKAPR-------KVIENRVGKGYVESQVRDRLLETH 74 (112)
T ss_dssp GGTHHHHHHHHHHHHTTSCBTTBCTTCCCS-------TTHHHHTTTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcCCCCCCH-------HHHHHHhCHHHHHHHHHHHHHHHH
Confidence 333334577899999999999999665673 34899999 43 445677777654
No 10
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=18.54 E-value=1.1e+02 Score=21.46 Aligned_cols=33 Identities=15% Similarity=0.431 Sum_probs=20.1
Q ss_pred chhhhhHHHH-------HHHhcCchHHHHHHHHhhhhhhccCC
Q 029825 80 TSWVGLGNSI-------KQLYEQPLHYLTNIHLKQWDQLRFGT 115 (187)
Q Consensus 80 ~sW~gLg~Si-------KqlYgQPLHYLTnillkqWDq~RiGs 115 (187)
-.|..||+-+ +..-..+-. |..||+.|- .|-|.
T Consensus 19 ~dW~~LA~~Lg~~~~~I~~i~~~~~~--~~~lL~~W~-~r~g~ 58 (91)
T 2ib1_A 19 KGWQELAGHLGYQAEAVETMACDQMP--AYTLLRNWA-AQEGN 58 (91)
T ss_dssp STHHHHHHHHTCCHHHHHHHTTSSCH--HHHHHHHTT-SSSSS
T ss_pred ccHHHHHHHcCCCHHHHHHHHhcCcH--HHHHHHHHH-hccCC
Confidence 4799999863 222222222 899999994 44443
Done!