BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029826
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F1MK05|RN170_BOVIN E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3
SV=2
Length = 259
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 97/174 (55%), Gaps = 5/174 (2%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQR 69
C +C ++P + NC H FCG CI+ W +GS L A CP+CR+ +TLL+P Q
Sbjct: 88 CPICLHQASLPVETNCGHLFCGTCIVAYWRYGSWLGAISCPICRQTVTLLLPVFGENDQS 147
Query: 70 HDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRAR 129
D V + Q + YNR F G + +RI DLP LLR RE+ L + R R
Sbjct: 148 QD--VVSLHQDISDYNRRFSG--QPRSIMERIMDLPTLLRHAFREMFSVG-GLFWMFRIR 202
Query: 130 VYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNR 183
+ + ++ + Y+ SP+D +PEAL GI+G LDD + L ++++ +YR V+ R
Sbjct: 203 IILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 256
>sp|Q28DS3|RN170_XENTR E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170
PE=2 SV=1
Length = 257
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 96/175 (54%), Gaps = 6/175 (3%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQ 68
C VC P + NC H FCG+CI+ W +GS L A CP+CR+ +TL+ P + Q
Sbjct: 86 TCPVCLQQATFPVETNCGHLFCGSCIIAYWRYGSWLGAINCPICRQTVTLIFPLFQATEQ 145
Query: 69 RHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRA 128
+IL++ YNR F G L RI DLP LLR RE+ L + R
Sbjct: 146 EDS---QNILREAIGYNRRFSG--QPRSLMDRIMDLPTLLRHAFREMFSVG-GLFWMFRI 199
Query: 129 RVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNR 183
R+ + ++ + Y+ SP+DIIPEA+ G++G LDD + L ++++ +YR V+ R
Sbjct: 200 RIVLCLLGALFYLVSPLDIIPEAVFGLLGFLDDFFVLFLLLIYISIMYREVVTQR 254
>sp|Q8CBG9|RN170_MOUSE E3 ubiquitin-protein ligase RNF170 OS=Mus musculus GN=Rnf170 PE=1
SV=1
Length = 286
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 5/174 (2%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQR 69
C +C + P + NC H FCG+CI+ W +GS L A CP+CR+ +TLL+ Q
Sbjct: 115 CPICLHQASFPVETNCGHLFCGSCIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQS 174
Query: 70 HDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRAR 129
D V + Q V YNR F G + +RI DLP LLR RE+ L + R R
Sbjct: 175 QD--VIRLRQDVNDYNRRFSG--QPRSIMERIMDLPTLLRHAFREVFSVG-GLFWMFRIR 229
Query: 130 VYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNR 183
+ + ++ + Y+ SP+D +PEAL GI+G LDD + L ++++ +YR V+ R
Sbjct: 230 IMLCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 283
>sp|Q96K19|RN170_HUMAN E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1
SV=2
Length = 258
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 95/174 (54%), Gaps = 5/174 (2%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQR 69
C +C + P + NC H FCG CI+ W +GS L A CP+CR+ +TLL+ Q
Sbjct: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQS 146
Query: 70 HDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRAR 129
D V + Q + YNR F G + +RI DLP LLR RE+ L + R R
Sbjct: 147 QD--VLRLHQDINDYNRRFSG--QPRSIMERIMDLPTLLRHAFREMFSVG-GLFWMFRIR 201
Query: 130 VYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNR 183
+ + ++ + Y+ SP+D +PEAL GI+G LDD + L ++++ +YR V+ R
Sbjct: 202 IILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 255
>sp|Q7SZN2|RN170_DANRE E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2
SV=1
Length = 266
Score = 119 bits (299), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 8/182 (4%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIP----NDDS 65
C VC +P + NC H FCG+CI+ W +G+ L A CP+CR+ +TLL P ++ S
Sbjct: 88 CPVCLQQAVLPVETNCGHLFCGSCIIAYWRYGTWLGAISCPICRQMVTLLFPLFQDSEQS 147
Query: 66 LRQRHDPAVGD-ILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPL 124
P IL + YNR F G L R++D+P LLR RE+ L
Sbjct: 148 AVAADSPVEPTLILTDISDYNRRFSG--QPRSLLDRLRDVPTLLRHAFREMFSVG-GLFW 204
Query: 125 VIRARVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRH 184
+ R R+ + + + Y+ SP+D +PE +LG++G LDD + LL F++++ +YR V+ R
Sbjct: 205 MFRVRILLCVCGALAYLVSPLDFLPEGVLGLLGFLDDFFVILLLFIYISIMYREVVTQRL 264
Query: 185 GG 186
G
Sbjct: 265 AG 266
>sp|Q5PPX5|RN170_XENLA E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2
SV=1
Length = 257
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 98/175 (56%), Gaps = 6/175 (3%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQ 68
C VC P + NC H FCG+CI+ W +G+ L A CP+CR+ +TLL P + Q
Sbjct: 86 TCPVCLQQATFPVETNCGHLFCGSCIIAYWRYGTWLGAINCPICRQTVTLLFPLFGATDQ 145
Query: 69 RHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRA 128
+ILQ+ YNR F G L RI DLP LLR RE+ L + R
Sbjct: 146 ED---AQNILQEATGYNRRFSG--QPRSLMDRIMDLPTLLRHAFREMFSVG-GLFWMFRI 199
Query: 129 RVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNR 183
R+ + ++ + +Y+ SP+DIIPEAL GI+G LDDL + L ++++ +YR V+ R
Sbjct: 200 RIVLCLLGALLYLVSPLDIIPEALFGILGFLDDLFVLFLLLIYISIMYREVVTQR 254
>sp|Q5M7Z0|RNFT1_HUMAN RING finger and transmembrane domain-containing protein 1 OS=Homo
sapiens GN=RNFT1 PE=2 SV=2
Length = 435
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLR 67
D+CS+C F P C H FC C+ L ++ T CPLCR I+ D +
Sbjct: 373 DICSICQAEFQKPILLICQHIFCEECMTLWFNREKT-----CPLCRTVIS------DHIN 421
Query: 68 QRHDPAVGDILQ 79
+ D A LQ
Sbjct: 422 KWKDGATSSHLQ 433
>sp|Q9CQ29|RN151_MOUSE RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1
Length = 239
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57
P C +CSVCHG P + CSH FC CI +T CP CR+ +T
Sbjct: 14 PDCKFLCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQNT-----CPCCRKEVT 62
>sp|Q12161|PSH1_YEAST RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSH1 PE=1 SV=1
Length = 406
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQ 68
VCS+CH VP C H +C C+ W +T + CP CR IT + + +L+Q
Sbjct: 29 VCSICHDYMFVPMMTPCGHNYCYGCLN-TWFASNTQKELACPQCRSDITTIPALNTTLQQ 87
Query: 69 RHDPAVGDILQKV-----ESYNRIFGGPTTANGLFQRIQDLPFLLRRLVR 113
+ IL+K+ ES+ ++ T ++ ++ L ++ +
Sbjct: 88 ----YLSFILEKLRDQNDESFKKLLTTKTKEENDYKNDKEKDTLFDKVFK 133
>sp|Q6ZRF8|RN207_HUMAN RING finger protein 207 OS=Homo sapiens GN=RNF207 PE=2 SV=2
Length = 634
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 1 MEGPPCGD-------VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53
+EGP D VC +CH + PC +C H FC C+ +T CPLC+
Sbjct: 9 LEGPSSLDAPSIHPLVCPLCHVQYERPCLLDCFHDFCAGCLR----GRATDGRLTCPLCQ 64
Query: 54 RRITLL----IPNDDSLRQRHDPAVGDILQKVESYN 85
+ L +P D L Q + GD ++ V N
Sbjct: 65 HQTVLKGPSGLPPVDRLLQFLVDSSGDGVEAVRCAN 100
>sp|Q6NZ21|RNFT1_DANRE RING finger and transmembrane domain-containing protein 1 OS=Danio
rerio GN=rnft1 PE=2 SV=2
Length = 419
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDS 65
GD+C +C +F P C H FC CI + T CPLCR IT D
Sbjct: 355 AGDICPICQADFKQPRVLVCQHIFCEECIAQWLNQERT-----CPLCRTVIT------DK 403
Query: 66 LRQRHDPAVGDILQ 79
+ + D A LQ
Sbjct: 404 VHKWKDGATSAHLQ 417
>sp|Q3V3A7|RN207_MOUSE RING finger protein 207 OS=Mus musculus GN=Rnf207 PE=2 SV=2
Length = 635
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLL-----IPND 63
VC +CHG + PC +C H FC C+ +T CPLC+ + TL+ +P
Sbjct: 24 VCPLCHGQYERPCLLDCFHDFCTGCLR----GRATDGRLSCPLCQHQ-TLVKGPSGLPPV 78
Query: 64 DSLRQRHDPAVGDILQKVESYN 85
D L Q + GD + V N
Sbjct: 79 DRLLQFLVDSSGDGSEAVRCAN 100
>sp|Q96EX2|RNFT2_HUMAN RING finger and transmembrane domain-containing protein 2 OS=Homo
sapiens GN=RNFT2 PE=2 SV=2
Length = 444
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSL 66
GD+C++C F P C H FC C+ L D T CPLCR D+L
Sbjct: 381 GDICAICQAEFREPLILLCQHVFCEECLCLWLDRERT-----CPLCRSVAV------DTL 429
Query: 67 RQRHDPAVGDILQ 79
R D A Q
Sbjct: 430 RCWKDGATSAHFQ 442
>sp|Q2TBT8|RN151_BOVIN RING finger protein 151 OS=Bos taurus GN=RNF151 PE=2 SV=1
Length = 240
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56
P C +CSVCHG P + CSH FC CI+ T CP CR+ +
Sbjct: 14 PDCNFLCSVCHGVLKRPVRLPCSHIFCKKCILRWLARQKT-----CPCCRKEV 61
>sp|Q80V85|TRI62_MOUSE Tripartite motif-containing protein 62 OS=Mus musculus GN=Trim62
PE=2 SV=1
Length = 475
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54
+CS+C + P C H+FC CI W A CP CRR
Sbjct: 10 LCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRR 55
>sp|Q9BVG3|TRI62_HUMAN Tripartite motif-containing protein 62 OS=Homo sapiens GN=TRIM62
PE=2 SV=1
Length = 475
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54
+CS+C + P C H+FC CI W A CP CRR
Sbjct: 10 LCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRR 55
>sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG
PE=1 SV=2
Length = 1625
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 5 PCGDVCSVCHGNFN----VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53
PC CSVCH +N VP C H FC +C+ ++ S CP CR
Sbjct: 8 PC---CSVCHTRYNEDERVPLLLQCGHGFCKDCLSKMFSTSSD-TTLTCPRCR 56
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1
Length = 610
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57
C +C F P C H FC +CI VW+ S+ CP C+ IT
Sbjct: 146 CPLCVELFKDPVMVACGHNFCRSCIDKVWEGQSSFA---CPECKESIT 190
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57
C +C F P C H FC +CI W+ S+ CP CR IT
Sbjct: 145 CPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFA---CPECRESIT 189
>sp|Q8BFW4|TRI65_MOUSE Tripartite motif-containing protein 65 OS=Mus musculus GN=Trim65
PE=2 SV=1
Length = 522
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACR--CPLCRR 54
CS+C G + P C H FCGNCI W ++C CP CR+
Sbjct: 12 TCSICLGRYRDPVTLPCGHSFCGNCIQDSW------RSCEKSCPECRQ 53
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56
C++C + VP +C+H FC CI V + +CPLCR I
Sbjct: 760 CAICLDSLTVPVITHCAHVFCKPCICQVIQNEQP--HAKCPLCRNDI 804
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56
C++C + P +C+H FC CI V H A +CPLCR I
Sbjct: 754 CAICLDSLTFPVITHCAHVFCKPCICQVI-HSEQPHA-KCPLCRNEI 798
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 38.9 bits (89), Expect = 0.019, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53
CS+C G + C H+FC +CI L W + +CP+C+
Sbjct: 1239 CSICLGEVEIGAIIKCGHYFCKSCI-LTWLRAHS----KCPICK 1277
>sp|Q55BF8|Y1372_DICDI RING finger domain and kelch repeat-containing protein
DDB_G0271372 OS=Dictyostelium discoideum
GN=DDB_G0271372 PE=4 SV=1
Length = 999
Score = 38.9 bits (89), Expect = 0.021, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQR 69
C C FN P Q C H C CI V++ G T +CP+C + ++ D S
Sbjct: 7 CPNCLKVFNNPRQLECDHILCTRCIEGVYNPGRT-PIIKCPVCDKHSIVITSIDKSFPLI 65
Query: 70 H 70
H
Sbjct: 66 H 66
>sp|Q2T9Z0|TRI17_BOVIN E3 ubiquitin-protein ligase TRIM17 OS=Bos taurus GN=TRIM17 PE=2
SV=1
Length = 475
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 15/86 (17%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACR-------CPLCR-------- 53
CS+C F P C H FC CI L W+ + R CP CR
Sbjct: 15 TCSICLDYFTDPVMTTCGHNFCRECIQLTWEKARGQKKRRKRKGSFPCPECRELSPQRNL 74
Query: 54 RRITLLIPNDDSLRQRHDPAVGDILQ 79
R LL + +RQ P D+ Q
Sbjct: 75 RPNRLLTKVAEMVRQHPSPQSRDLCQ 100
>sp|Q2KHN1|RN151_HUMAN RING finger protein 151 OS=Homo sapiens GN=RNF151 PE=2 SV=1
Length = 245
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57
VCSVCHG P + CSH FC CI+ T CP CR+ +
Sbjct: 19 VCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKT-----CPCCRKEVK 62
>sp|Q3UF64|RNFT2_MOUSE RING finger and transmembrane domain-containing protein 2 OS=Mus
musculus GN=Rnft2 PE=2 SV=2
Length = 445
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSL 66
G VC++C F P C H FC C+ L D T CPLCR D+L
Sbjct: 382 GAVCAICQAEFRDPMILLCQHVFCEECLCLWLDRERT-----CPLCRSVAV------DTL 430
Query: 67 RQRHDPAVGDILQ 79
R D A LQ
Sbjct: 431 RCWKDGATSAHLQ 443
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56
CS+C F P C H FC NC+ DH A CPLC+ +
Sbjct: 479 CSLCMRLFFEPVTTPCGHSFCKNCLERCLDH-----APYCPLCKESL 520
>sp|Q9DCN7|RNFT1_MOUSE RING finger and transmembrane domain-containing protein 1 OS=Mus
musculus GN=Rnft1 PE=2 SV=1
Length = 395
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 14/77 (18%)
Query: 6 CGD---VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPN 62
C D +C++C F P C H FC CI L ++ T CPLCR I+
Sbjct: 328 CSDMDGICTICQAEFQKPVLLFCQHIFCEECITLWFNREKT-----CPLCRTVIS----- 377
Query: 63 DDSLRQRHDPAVGDILQ 79
+ + + D A LQ
Sbjct: 378 -ECINKWKDGATSSHLQ 393
>sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles waltl PE=1 SV=2
Length = 625
Score = 38.5 bits (88), Expect = 0.027, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57
C +C F P C H FC +CI W+ S A CP C+ +T
Sbjct: 163 CPLCRSLFKEPVILECGHNFCKHCIDKSWESAS---AFSCPECKEVLT 207
>sp|Q923T7|TRIM7_MOUSE Tripartite motif-containing protein 7 OS=Mus musculus GN=Trim7
PE=2 SV=2
Length = 510
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDH--GSTLQACR-------CPLCRR--RIT 57
CS+C F P C H FC CIM W+ T A R CP CR R +
Sbjct: 28 TCSICLEFFREPVSVECGHSFCRACIMRCWERPGAGTGTATRTLPCPLPCPQCREPARPS 87
Query: 58 LLIPN 62
L PN
Sbjct: 88 QLRPN 92
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPN 62
CS+C F P C H FC C+ DH + +CPLC+ + +P+
Sbjct: 461 CSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNA-----KCPLCKDVLLQCLPS 508
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLI 60
C CHG + P C H FC C+ + G RC LC +++ L+
Sbjct: 159 CKKCHGFLSDPVSLWCGHTFCKLCL----ERGRAADR-RCALCGVKLSALM 204
>sp|A0JNG4|RN207_BOVIN RING finger protein 207 OS=Bos taurus GN=RNF207 PE=2 SV=1
Length = 556
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 1 MEGPPCGD-------VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53
+EGP D VC +CH + PC +C H FC C+ G CPLC+
Sbjct: 9 LEGPGALDGTSGHPLVCPLCHAQYERPCLLDCFHEFCAGCLRGRAADGRLA----CPLCQ 64
Query: 54 RRITLLIPN 62
+ + P+
Sbjct: 65 HQTVVKGPS 73
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 38.1 bits (87), Expect = 0.036, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSL 66
C +C +N +C+H FC CI+ +T C+ P RR I P+ DSL
Sbjct: 16 CPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIR-GAPHMDSL 71
>sp|Q14258|TRI25_HUMAN E3 ubiquitin/ISG15 ligase TRIM25 OS=Homo sapiens GN=TRIM25 PE=1
SV=2
Length = 630
Score = 37.4 bits (85), Expect = 0.051, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWD-HGSTLQACRCPLCR 53
CS+C F P C H FCG+C+ W GS CP CR
Sbjct: 13 CSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYL---CPQCR 54
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 37.4 bits (85), Expect = 0.058, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56
C++C + VP +C+H FC CI + +CPLCR I
Sbjct: 757 CAICLDSLTVPVITHCAHVFCKPCICQCIQNEQP--HAKCPLCRNDI 801
>sp|Q5RAG4|RNFT2_PONAB RING finger and transmembrane domain-containing protein 2 OS=Pongo
abelii GN=RNFT2 PE=2 SV=1
Length = 444
Score = 37.4 bits (85), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSL 66
GD+C++C F P C H FC C+ L D T CPL R D+L
Sbjct: 381 GDICAICQAEFREPLILLCQHVFCEECLCLWLDRERT-----CPLSRSVAV------DTL 429
Query: 67 RQRHDPAVGDILQ 79
R D A Q
Sbjct: 430 RCWKDGATSAHFQ 442
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 37.0 bits (84), Expect = 0.079, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQA--CRCPLCRR 54
CSVC F P C H FC +C+ W +Q RCP CR+
Sbjct: 13 CSVCLELFKEPVTTPCGHNFCMSCLDETW----VVQGPPYRCPQCRK 55
>sp|P68907|PZRN3_RAT E3 ubiquitin-protein ligase PDZRN3 OS=Rattus norvegicus GN=Pdzrn3
PE=1 SV=1
Length = 1062
Score = 36.6 bits (83), Expect = 0.086, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIM-LVWDHGSTLQACRCPLCRRRITLLIP 61
C++CH P C H FC C++ V GS CR L + + ++P
Sbjct: 18 CALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPSRCRGRLSAKELNHVLP 70
>sp|P86449|TR43C_MOUSE Tripartite motif-containing protein 43C OS=Mus musculus
GN=Trim43c PE=2 SV=1
Length = 446
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQ 68
CS+C G F P C H FC C++L + CP CR+ ND SL++
Sbjct: 15 TCSICQGIFMDPVYLRCGHKFCETCLLLFQEDIKF--PAYCPTCRQPCNQRYINDISLKK 72
Query: 69 R 69
+
Sbjct: 73 Q 73
>sp|Q69ZS0|PZRN3_MOUSE E3 ubiquitin-protein ligase PDZRN3 OS=Mus musculus GN=Pdzrn3 PE=1
SV=3
Length = 1063
Score = 36.6 bits (83), Expect = 0.092, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 7 GDV-----CSVCHGNFNVPCQANCSHWFCGNCIM-LVWDHGSTLQACRCPLCRRRITLLI 60
GDV C++CH P C H FC C++ V GS CR L + + ++
Sbjct: 10 GDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNHVL 69
Query: 61 P 61
P
Sbjct: 70 P 70
>sp|Q9UPQ7|PZRN3_HUMAN E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1
SV=2
Length = 1066
Score = 36.6 bits (83), Expect = 0.092, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 7 GDV-----CSVCHGNFNVPCQANCSHWFCGNCIM-LVWDHGSTLQACRCPLCRRRITLLI 60
GDV C++CH P C H FC C++ V GS CR L + + ++
Sbjct: 10 GDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNHVL 69
Query: 61 P 61
P
Sbjct: 70 P 70
>sp|Q4I7N9|BRE1_GIBZE E3 ubiquitin-protein ligase BRE1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=BRE1 PE=3
SV=1
Length = 703
Score = 36.6 bits (83), Expect = 0.098, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54
+C++C NF C H FC C+ D + + +CP C R
Sbjct: 650 LCTICRNNFKNTALKTCGHLFCNQCV----DDRISNRMRKCPTCSR 691
>sp|Q1MTQ0|BRL1_SCHPO E3 ubiquitin-protein ligase brl1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brl1 PE=1 SV=1
Length = 692
Score = 36.6 bits (83), Expect = 0.10, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 10 CSVCH-GNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52
CSVC+ N+ NC H FC NC+ ++H ++ CP C
Sbjct: 639 CSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTS----TCPQC 678
>sp|Q91829|RAG1_XENLA V(D)J recombination-activating protein 1 OS=Xenopus laevis GN=rag1
PE=2 SV=1
Length = 1045
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53
C VC + P Q +C H FC CI+ L C CP C+
Sbjct: 294 CLVCEHILSDPVQTSCKHLFCRICILKY----IKLMGCYCPSCK 333
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL--LIPN 62
C +C F P C H FC CI V G ++ CP+CR+R L L PN
Sbjct: 15 TCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSV----CPVCRQRFLLKNLRPN 66
>sp|Q01082|SPTB2_HUMAN Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1
PE=1 SV=2
Length = 2364
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 39 DHGSTLQACRCPLCRRRITLLIPNDDSLR---QRHDPAVGDILQKVESYNRIFGGPT-TA 94
DHG LQ + LLI + +L+ Q H P + DI ++ S N + + +A
Sbjct: 1512 DHGHNLQT---------VQLLIKKNQTLQKEIQGHQPRIDDIFER--SQNIVTDSSSLSA 1560
Query: 95 NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVY 131
+ QR+ DL L L+ E HR L RA+ Y
Sbjct: 1561 EAIRQRLADLKQLWGLLIEETEKRHRRLEEAHRAQQY 1597
>sp|Q9C029|TRIM7_HUMAN Tripartite motif-containing protein 7 OS=Homo sapiens GN=TRIM7
PE=1 SV=2
Length = 511
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDH---GSTLQACR-------CPLCRR--RI 56
CS+C F P C H FC CI W+ GS A R CP CR R
Sbjct: 28 TCSICLELFREPVSVECGHSFCRACIGRCWERPGAGSVGAATRAPPFPLPCPQCREPARP 87
Query: 57 TLLIPN 62
+ L PN
Sbjct: 88 SQLRPN 93
>sp|Q9UUF0|PEX10_SCHPO Peroxisome biogenesis factor 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pas4 PE=3 SV=1
Length = 306
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53
P CS+C + P C H FC +CI +G T + CPLCR
Sbjct: 250 PEGNRKCSLCMEFIHCPAATECGHIFCWSCI-----NGWTSKKSECPLCR 294
>sp|Q6PJ69|TRI65_HUMAN Tripartite motif-containing protein 65 OS=Homo sapiens GN=TRIM65
PE=2 SV=3
Length = 517
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQ 68
C++C G + P C H FCG CI WD CP CR P D
Sbjct: 11 TCAICLGLYQDPVTLPCGHNFCGACIRDWWDRCGKA----CPECRE------PFPDGAEL 60
Query: 69 RHDPAVGDILQKVES 83
R + A+ +L+ V +
Sbjct: 61 RRNVALSGVLEVVRA 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.147 0.489
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,495,086
Number of Sequences: 539616
Number of extensions: 2941357
Number of successful extensions: 8863
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 270
Number of HSP's that attempted gapping in prelim test: 8634
Number of HSP's gapped (non-prelim): 452
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)