Query 029826
Match_columns 187
No_of_seqs 224 out of 2432
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 06:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.6 6.8E-16 2.3E-20 100.1 6.4 53 1-57 2-54 (78)
2 3ztg_A E3 ubiquitin-protein li 99.6 3.6E-15 1.2E-19 99.7 7.9 52 2-56 8-60 (92)
3 2kr4_A Ubiquitin conjugation f 99.6 4.8E-15 1.7E-19 97.8 6.7 51 2-57 9-59 (85)
4 2djb_A Polycomb group ring fin 99.6 6.6E-15 2.3E-19 94.0 6.0 52 2-58 10-62 (72)
5 2ecy_A TNF receptor-associated 99.5 3.2E-15 1.1E-19 93.9 4.2 52 2-57 10-61 (66)
6 2kre_A Ubiquitin conjugation f 99.5 1E-14 3.6E-19 99.0 6.6 50 3-57 25-74 (100)
7 3fl2_A E3 ubiquitin-protein li 99.5 5.9E-15 2E-19 104.0 5.2 49 5-57 50-98 (124)
8 2yur_A Retinoblastoma-binding 99.5 5.1E-15 1.7E-19 95.1 4.4 52 2-56 10-62 (74)
9 1wgm_A Ubiquitin conjugation f 99.5 1.8E-14 6.2E-19 97.5 7.1 50 3-57 18-68 (98)
10 2ysl_A Tripartite motif-contai 99.5 1.2E-14 4.1E-19 92.9 4.9 54 2-57 15-68 (73)
11 2csy_A Zinc finger protein 183 99.5 1.5E-14 5.1E-19 94.5 5.2 50 3-57 11-60 (81)
12 3lrq_A E3 ubiquitin-protein li 99.5 1.2E-14 4.1E-19 98.7 4.7 49 5-57 20-69 (100)
13 4ayc_A E3 ubiquitin-protein li 99.5 4.7E-15 1.6E-19 106.5 2.5 48 5-57 51-98 (138)
14 2ysj_A Tripartite motif-contai 99.5 3.8E-14 1.3E-18 88.1 5.5 49 2-52 15-63 (63)
15 2d8t_A Dactylidin, ring finger 99.5 1.5E-14 5.3E-19 92.0 3.4 51 3-58 11-61 (71)
16 2ecw_A Tripartite motif-contai 99.5 3.7E-14 1.3E-18 93.0 5.3 56 2-57 14-70 (85)
17 2egp_A Tripartite motif-contai 99.5 5.8E-15 2E-19 95.8 1.4 56 2-57 7-64 (79)
18 3ng2_A RNF4, snurf, ring finge 99.5 2.1E-14 7.3E-19 91.2 3.6 50 3-57 6-62 (71)
19 1z6u_A NP95-like ring finger p 99.5 4.4E-14 1.5E-18 102.8 5.3 49 5-57 76-124 (150)
20 2ea6_A Ring finger protein 4; 99.5 3.6E-14 1.2E-18 89.5 3.9 50 3-57 11-67 (69)
21 2ecv_A Tripartite motif-contai 99.5 4.4E-14 1.5E-18 92.6 4.5 56 2-57 14-70 (85)
22 2ct2_A Tripartite motif protei 99.5 6.4E-14 2.2E-18 92.6 5.2 54 2-57 10-67 (88)
23 1chc_A Equine herpes virus-1 r 99.4 8.6E-14 3E-18 87.7 5.1 53 5-62 3-56 (68)
24 2ckl_A Polycomb group ring fin 99.4 5.4E-14 1.8E-18 96.7 4.1 50 4-58 12-62 (108)
25 2y43_A E3 ubiquitin-protein li 99.4 8.2E-14 2.8E-18 94.3 4.5 48 5-57 20-68 (99)
26 2kiz_A E3 ubiquitin-protein li 99.4 2.2E-13 7.4E-18 86.1 5.7 54 4-62 11-67 (69)
27 3l11_A E3 ubiquitin-protein li 99.4 8.5E-15 2.9E-19 101.9 -1.0 51 4-58 12-62 (115)
28 1jm7_A BRCA1, breast cancer ty 99.4 1.8E-13 6E-18 94.5 5.7 52 5-58 19-70 (112)
29 1g25_A CDK-activating kinase a 99.4 9.4E-14 3.2E-18 86.8 3.9 48 6-57 2-54 (65)
30 2ecj_A Tripartite motif-contai 99.4 1.3E-13 4.3E-18 84.1 4.3 49 2-52 10-58 (58)
31 2yu4_A E3 SUMO-protein ligase 99.4 2.6E-13 8.8E-18 91.1 6.0 53 3-55 3-59 (94)
32 2xeu_A Ring finger protein 4; 99.4 8.9E-14 3.1E-18 86.4 3.2 47 6-57 2-55 (64)
33 3hct_A TNF receptor-associated 99.4 1.5E-13 5.1E-18 96.0 4.3 52 2-57 13-64 (118)
34 2ep4_A Ring finger protein 24; 99.4 3E-13 1E-17 86.6 5.1 54 3-61 11-67 (74)
35 2ecm_A Ring finger and CHY zin 99.4 2.5E-13 8.5E-18 81.9 4.3 49 4-57 2-54 (55)
36 1iym_A EL5; ring-H2 finger, ub 99.4 2E-13 6.7E-18 82.4 3.7 48 4-56 2-53 (55)
37 3knv_A TNF receptor-associated 99.4 7.8E-14 2.7E-18 100.4 1.8 50 3-56 27-76 (141)
38 2ecn_A Ring finger protein 141 99.4 1.4E-13 4.8E-18 87.2 2.7 51 2-58 10-60 (70)
39 2c2l_A CHIP, carboxy terminus 99.4 5.2E-13 1.8E-17 105.8 6.0 50 4-57 205-254 (281)
40 2ect_A Ring finger protein 126 99.4 3.6E-13 1.2E-17 87.1 3.6 51 3-58 11-64 (78)
41 1x4j_A Ring finger protein 38; 99.4 4.1E-13 1.4E-17 86.3 3.8 49 4-57 20-71 (75)
42 2f42_A STIP1 homology and U-bo 99.4 1E-12 3.5E-17 97.7 6.4 51 3-57 102-152 (179)
43 1e4u_A Transcriptional repress 99.3 1.1E-12 3.6E-17 85.0 5.5 52 3-58 7-62 (78)
44 2ckl_B Ubiquitin ligase protei 99.3 3.3E-13 1.1E-17 99.6 3.4 49 5-57 52-101 (165)
45 1bor_A Transcription factor PM 99.3 1.3E-13 4.6E-18 83.7 1.0 48 2-57 1-48 (56)
46 1rmd_A RAG1; V(D)J recombinati 99.3 5.1E-13 1.7E-17 92.9 3.6 50 5-58 21-70 (116)
47 2l0b_A E3 ubiquitin-protein li 99.3 6.9E-13 2.4E-17 88.4 4.0 48 5-57 38-88 (91)
48 1v87_A Deltex protein 2; ring- 99.3 2.9E-12 9.8E-17 88.8 5.8 54 6-59 24-95 (114)
49 3hcs_A TNF receptor-associated 99.3 1.6E-12 5.5E-17 96.3 4.3 53 2-58 13-65 (170)
50 1jm7_B BARD1, BRCA1-associated 99.3 9.4E-13 3.2E-17 91.8 2.5 46 5-57 20-66 (117)
51 4ap4_A E3 ubiquitin ligase RNF 99.3 1.4E-12 4.9E-17 92.2 3.1 50 4-58 4-60 (133)
52 2vje_A E3 ubiquitin-protein li 99.2 3.1E-12 1.1E-16 79.7 2.5 52 4-60 5-59 (64)
53 4ic3_A E3 ubiquitin-protein li 99.2 2E-12 6.7E-17 82.9 1.2 47 5-60 22-69 (74)
54 2vje_B MDM4 protein; proto-onc 99.2 4E-12 1.4E-16 79.0 2.2 52 4-60 4-58 (63)
55 2ecl_A Ring-box protein 2; RNF 99.2 1.5E-11 5E-16 80.2 4.0 48 5-57 13-75 (81)
56 3htk_C E3 SUMO-protein ligase 99.2 1.5E-11 5.1E-16 95.9 3.7 53 2-57 176-231 (267)
57 2ecg_A Baculoviral IAP repeat- 99.1 8.3E-12 2.8E-16 80.2 1.5 48 5-61 23-71 (75)
58 2y1n_A E3 ubiquitin-protein li 99.1 2.4E-11 8.4E-16 100.1 4.4 49 6-58 331-379 (389)
59 4ap4_A E3 ubiquitin ligase RNF 99.1 3.1E-11 1E-15 85.3 3.3 49 4-57 69-124 (133)
60 3dpl_R Ring-box protein 1; ubi 99.0 1.4E-10 4.8E-15 79.3 4.5 46 6-56 36-99 (106)
61 2ea5_A Cell growth regulator w 99.0 1.7E-10 5.7E-15 72.6 4.3 50 5-63 13-63 (68)
62 1wim_A KIAA0161 protein; ring 99.0 9.2E-11 3.1E-15 78.4 3.1 52 4-55 2-61 (94)
63 2yho_A E3 ubiquitin-protein li 99.0 6.8E-11 2.3E-15 76.7 1.1 50 5-63 16-66 (79)
64 2bay_A PRE-mRNA splicing facto 98.9 5E-10 1.7E-14 68.9 3.1 46 7-57 3-49 (61)
65 4a0k_B E3 ubiquitin-protein li 98.8 4.5E-10 1.5E-14 77.9 0.2 46 6-56 47-110 (117)
66 2d8s_A Cellular modulator of i 98.7 1.5E-08 5.3E-13 65.5 5.1 53 3-58 11-70 (80)
67 2ct0_A Non-SMC element 1 homol 98.5 2.8E-07 9.6E-12 58.5 5.3 52 4-58 12-64 (74)
68 3vk6_A E3 ubiquitin-protein li 98.4 2.4E-07 8.2E-12 61.5 3.5 46 9-58 3-49 (101)
69 3k1l_B Fancl; UBC, ring, RWD, 98.1 6.2E-07 2.1E-11 72.4 1.7 54 5-58 306-373 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.1 3E-06 1E-10 51.5 3.9 53 1-57 1-58 (60)
71 2jun_A Midline-1; B-BOX, TRIM, 97.4 7.6E-05 2.6E-09 49.9 2.2 34 6-39 2-38 (101)
72 3nw0_A Non-structural maintena 96.6 0.003 1E-07 48.8 5.3 51 6-59 179-230 (238)
73 3m62_A Ubiquitin conjugation f 96.0 0.0097 3.3E-07 54.2 6.2 51 2-57 886-937 (968)
74 2cs3_A Protein C14ORF4, MY039 95.6 0.0062 2.1E-07 38.5 2.3 49 4-52 12-64 (93)
75 2ko5_A Ring finger protein Z; 91.5 0.11 3.8E-06 33.8 2.4 48 8-62 29-77 (99)
76 3i2d_A E3 SUMO-protein ligase 91.3 0.071 2.4E-06 43.5 1.6 48 7-57 249-299 (371)
77 4fo9_A E3 SUMO-protein ligase 90.6 0.092 3.1E-06 42.7 1.6 48 7-57 215-265 (360)
78 1wil_A KIAA1045 protein; ring 88.9 0.9 3.1E-05 28.9 4.9 59 2-62 10-82 (89)
79 2lri_C Autoimmune regulator; Z 84.2 0.74 2.5E-05 27.9 2.6 51 3-55 8-59 (66)
80 1weo_A Cellulose synthase, cat 83.6 2.3 7.9E-05 27.3 4.8 49 6-58 15-70 (93)
81 3ql9_A Transcriptional regulat 83.2 1.7 5.9E-05 30.0 4.4 50 5-54 55-110 (129)
82 2k16_A Transcription initiatio 80.0 0.48 1.6E-05 29.3 0.6 51 5-56 16-69 (75)
83 1y02_A CARP2, FYVE-ring finger 77.3 0.28 9.7E-06 33.5 -1.1 90 6-114 18-111 (120)
84 1wfk_A Zinc finger, FYVE domai 76.8 1 3.5E-05 28.9 1.5 34 3-36 5-42 (88)
85 3mjh_B Early endosome antigen 76.2 0.56 1.9E-05 24.6 0.1 16 5-20 3-18 (34)
86 1we9_A PHD finger family prote 75.0 0.36 1.2E-05 28.9 -1.0 53 3-55 2-58 (64)
87 3ttc_A HYPF, transcriptional r 74.8 1.5 5.2E-05 38.5 2.5 53 4-56 14-99 (657)
88 4g9i_A Hydrogenase maturation 73.9 2.6 8.8E-05 37.8 3.8 55 4-58 103-190 (772)
89 2lbm_A Transcriptional regulat 73.5 2 6.8E-05 30.2 2.4 49 6-54 62-116 (142)
90 1vfy_A Phosphatidylinositol-3- 72.8 1.6 5.5E-05 26.8 1.6 29 7-35 11-43 (73)
91 2jne_A Hypothetical protein YF 72.3 0.11 3.9E-06 33.9 -3.9 45 8-62 33-77 (101)
92 3vth_A Hydrogenase maturation 70.8 1.9 6.4E-05 38.6 2.1 54 4-57 108-194 (761)
93 1m3v_A FLIN4, fusion of the LI 70.7 2.5 8.5E-05 28.4 2.4 45 8-57 33-80 (122)
94 2yw8_A RUN and FYVE domain-con 70.2 2.1 7.2E-05 26.9 1.7 31 6-36 18-52 (82)
95 1z2q_A LM5-1; membrane protein 69.5 2.2 7.5E-05 26.9 1.7 31 6-36 20-54 (84)
96 2lv2_A Insulinoma-associated p 68.7 6.1 0.00021 24.7 3.8 43 4-57 25-67 (85)
97 1joc_A EEA1, early endosomal a 68.0 1.7 5.8E-05 29.8 1.0 29 7-35 69-101 (125)
98 3vhs_A ATPase wrnip1; zinc fin 67.5 1.1 3.8E-05 21.6 0.0 16 3-18 2-17 (29)
99 2l5u_A Chromodomain-helicase-D 67.3 2.6 9E-05 24.8 1.7 48 4-54 8-57 (61)
100 2xqn_T Testin, TESS; metal-bin 65.0 4.1 0.00014 27.3 2.5 44 7-57 30-74 (126)
101 1dvp_A HRS, hepatocyte growth 64.8 1.8 6.3E-05 32.4 0.7 29 6-34 160-192 (220)
102 1x4u_A Zinc finger, FYVE domai 64.6 2.6 9E-05 26.5 1.4 30 6-35 13-46 (84)
103 3t7l_A Zinc finger FYVE domain 63.0 2.5 8.5E-05 27.1 1.0 30 7-36 20-53 (90)
104 1z60_A TFIIH basal transcripti 62.6 5.6 0.00019 23.4 2.4 40 8-52 16-58 (59)
105 2eq4_A Zinc finger protein 224 60.7 16 0.00053 18.8 4.2 37 5-52 10-46 (46)
106 2lce_A B-cell lymphoma 6 prote 60.3 10 0.00036 22.1 3.6 42 4-56 14-55 (74)
107 3zyq_A Hepatocyte growth facto 60.1 2.9 0.0001 31.5 1.1 30 6-35 163-196 (226)
108 2ct7_A Ring finger protein 31; 58.9 3.5 0.00012 26.0 1.2 28 10-37 28-61 (86)
109 1wen_A Inhibitor of growth fam 58.9 8.3 0.00028 23.4 2.9 49 3-56 12-66 (71)
110 2eop_A Zinc finger protein 268 58.3 17 0.00059 18.6 4.0 15 5-19 10-24 (46)
111 3u5n_A E3 ubiquitin-protein li 58.1 1.7 5.9E-05 32.3 -0.5 50 5-56 5-55 (207)
112 2epz_A Zinc finger protein 28 58.1 17 0.00057 18.8 3.9 15 5-19 10-24 (46)
113 3o36_A Transcription intermedi 57.9 2.1 7.1E-05 31.1 -0.0 50 5-56 2-52 (184)
114 2eps_A POZ-, at HOOK-, and zin 57.9 17 0.00058 19.7 4.0 42 5-57 10-52 (54)
115 2gmg_A Hypothetical protein PF 57.5 6.6 0.00023 26.0 2.3 27 19-55 67-93 (105)
116 1mm2_A MI2-beta; PHD, zinc fin 57.4 2 7E-05 25.3 -0.1 49 5-55 7-56 (61)
117 3lqh_A Histone-lysine N-methyl 57.2 3 0.0001 30.5 0.7 50 7-56 2-64 (183)
118 1wys_A Riken cDNA 2310008M20 p 57.1 7.5 0.00026 24.1 2.4 32 1-32 8-42 (75)
119 2o35_A Hypothetical protein DU 57.1 4.8 0.00016 26.3 1.6 14 28-41 42-55 (105)
120 2ytn_A Zinc finger protein 347 57.0 19 0.00063 18.5 4.1 15 5-19 10-24 (46)
121 3fyb_A Protein of unknown func 56.9 4.8 0.00016 26.3 1.6 14 28-41 41-54 (104)
122 1f62_A Transcription factor WS 56.7 4.4 0.00015 22.7 1.2 45 9-54 2-49 (51)
123 2rgt_A Fusion of LIM/homeobox 56.6 12 0.0004 26.5 3.8 45 6-57 32-76 (169)
124 2eoe_A Zinc finger protein 347 56.3 16 0.00054 18.8 3.6 15 5-19 10-24 (46)
125 2ytr_A Zinc finger protein 347 56.2 18 0.00063 18.5 3.9 14 6-19 11-24 (46)
126 3tx3_A Uncharacterized protein 56.0 64 0.0022 24.5 10.0 25 162-186 167-191 (249)
127 2eov_A Zinc finger protein 484 55.9 16 0.00054 18.8 3.5 15 5-19 10-24 (46)
128 2ytq_A Zinc finger protein 268 55.9 20 0.00067 18.5 4.1 15 5-19 10-24 (46)
129 2eoq_A Zinc finger protein 224 55.7 20 0.00067 18.4 4.1 14 6-19 11-24 (46)
130 2xjy_A Rhombotin-2; oncoprotei 55.4 8.2 0.00028 25.9 2.7 47 6-57 28-77 (131)
131 1weu_A Inhibitor of growth fam 55.1 7.2 0.00025 25.1 2.2 47 5-56 34-86 (91)
132 3uk3_C Zinc finger protein 217 54.7 7.2 0.00025 21.3 2.0 40 6-56 3-42 (57)
133 2d8v_A Zinc finger FYVE domain 54.6 7.1 0.00024 23.5 1.9 34 5-39 6-40 (67)
134 1rut_X Flinc4, fusion protein 54.5 4 0.00014 29.6 1.0 46 7-57 32-80 (188)
135 2epq_A POZ-, at HOOK-, and zin 54.2 14 0.00047 19.0 3.1 37 5-52 8-44 (45)
136 2epr_A POZ-, at HOOK-, and zin 54.1 19 0.00065 18.8 3.7 38 5-53 10-47 (48)
137 1x5w_A Zinc finger protein 64, 54.0 14 0.00047 21.3 3.3 41 5-56 7-47 (70)
138 1x6e_A Zinc finger protein 24; 53.9 10 0.00035 22.1 2.7 41 5-56 12-52 (72)
139 2eml_A Zinc finger protein 28 53.9 15 0.00052 18.9 3.2 14 6-19 11-24 (46)
140 2fiy_A Protein FDHE homolog; F 53.5 1.2 4.1E-05 35.5 -2.1 46 5-55 180-231 (309)
141 2yql_A PHD finger protein 21A; 53.5 1.4 4.8E-05 25.5 -1.3 49 4-54 6-55 (56)
142 2em0_A Zinc finger protein 224 53.4 19 0.00067 18.5 3.6 14 6-19 11-24 (46)
143 2em5_A ZFP-95, zinc finger pro 53.2 17 0.00058 18.8 3.4 14 6-19 11-24 (46)
144 3a1b_A DNA (cytosine-5)-methyl 53.2 7.2 0.00025 27.8 2.1 48 7-54 79-133 (159)
145 2ep2_A Zinc finger protein 484 53.2 19 0.00065 18.5 3.6 15 5-19 10-24 (46)
146 1bbo_A Human enhancer-binding 52.7 16 0.00055 19.7 3.4 38 8-56 2-39 (57)
147 2adr_A ADR1; transcription reg 52.6 17 0.00059 19.9 3.5 38 8-56 3-40 (60)
148 2ysp_A Zinc finger protein 224 52.3 17 0.00057 18.8 3.2 15 5-19 10-24 (46)
149 2ene_A Zinc finger protein 347 52.1 18 0.00063 18.6 3.4 15 5-19 10-24 (46)
150 2dmd_A Zinc finger protein 64, 52.1 23 0.00078 21.5 4.3 17 3-19 4-20 (96)
151 2en8_A Zinc finger protein 224 52.0 19 0.00067 18.4 3.5 15 5-19 10-24 (46)
152 2epx_A Zinc finger protein 28 51.8 23 0.00079 18.1 4.0 14 6-19 11-24 (47)
153 2pv0_B DNA (cytosine-5)-methyl 51.6 5 0.00017 32.9 1.2 50 6-55 92-148 (386)
154 3c6w_A P28ING5, inhibitor of g 51.6 3.8 0.00013 24.0 0.4 47 3-54 5-57 (59)
155 2enc_A Zinc finger protein 224 51.4 22 0.00075 18.2 3.6 15 5-19 10-24 (46)
156 2eme_A Zinc finger protein 473 51.4 19 0.00065 18.5 3.4 14 6-19 11-24 (46)
157 2el4_A Zinc finger protein 268 51.4 19 0.00064 18.5 3.3 14 6-19 11-24 (46)
158 1wff_A Riken cDNA 2810002D23 p 50.9 12 0.00039 23.8 2.6 28 5-32 23-52 (85)
159 3o70_A PHD finger protein 13; 50.8 4.2 0.00014 24.6 0.5 48 4-54 16-66 (68)
160 1wew_A DNA-binding family prot 50.7 4.5 0.00015 25.0 0.7 50 5-55 14-72 (78)
161 2elz_A Zinc finger protein 224 50.6 21 0.00071 18.4 3.5 15 5-19 10-24 (46)
162 2emk_A Zinc finger protein 28 50.4 20 0.00069 18.4 3.4 15 5-19 10-24 (46)
163 2jmo_A Parkin; IBR, E3 ligase, 49.6 1.1 3.8E-05 28.1 -2.4 33 7-39 25-70 (80)
164 2cot_A Zinc finger protein 435 49.5 21 0.00071 20.9 3.7 41 5-56 16-56 (77)
165 2eq0_A Zinc finger protein 347 49.3 22 0.00074 18.3 3.4 14 6-19 11-24 (46)
166 2emf_A Zinc finger protein 484 49.1 22 0.00075 18.3 3.4 14 6-19 11-24 (46)
167 2el6_A Zinc finger protein 268 48.9 22 0.00075 18.3 3.4 14 6-19 11-24 (46)
168 2ep0_A Zinc finger protein 28 48.7 22 0.00074 18.2 3.3 14 6-19 11-24 (46)
169 2ytd_A Zinc finger protein 473 48.3 18 0.00061 18.6 2.9 14 6-19 11-24 (46)
170 2emm_A ZFP-95, zinc finger pro 48.2 17 0.00059 18.6 2.9 15 5-19 10-24 (46)
171 3mp7_B Preprotein translocase 47.8 41 0.0014 19.8 4.6 29 97-125 4-32 (61)
172 2em7_A Zinc finger protein 224 47.4 21 0.0007 18.4 3.1 14 6-19 11-24 (46)
173 2em9_A Zinc finger protein 224 47.4 20 0.0007 18.3 3.1 14 6-19 11-24 (46)
174 2epw_A Zinc finger protein 268 47.3 26 0.00087 17.9 3.5 14 6-19 11-24 (46)
175 4gzn_C ZFP-57, zinc finger pro 47.2 10 0.00035 21.9 1.8 42 5-57 2-43 (60)
176 2emy_A Zinc finger protein 268 47.1 18 0.00062 18.6 2.8 14 6-19 11-24 (46)
177 2yt9_A Zinc finger-containing 47.0 20 0.00068 21.8 3.4 16 5-20 5-20 (95)
178 2ri7_A Nucleosome-remodeling f 47.0 4.5 0.00015 28.9 0.2 52 4-56 5-60 (174)
179 2g6q_A Inhibitor of growth pro 47.0 5.6 0.00019 23.5 0.6 47 3-54 7-59 (62)
180 2en1_A Zinc finger protein 224 46.8 20 0.00069 18.4 3.0 15 5-19 10-24 (46)
181 2jtn_A LIM domain-binding prot 46.7 10 0.00035 27.2 2.2 43 8-57 88-130 (182)
182 2ely_A Zinc finger protein 224 46.5 19 0.00065 18.5 2.9 15 5-19 10-24 (46)
183 2ytj_A Zinc finger protein 484 45.6 29 0.001 17.7 3.6 14 6-19 11-24 (46)
184 2ro1_A Transcription intermedi 45.5 4.4 0.00015 29.7 -0.0 49 7-56 2-50 (189)
185 2ytk_A Zinc finger protein 347 45.3 20 0.00068 18.4 2.8 14 6-19 11-24 (46)
186 1xwh_A Autoimmune regulator; P 45.2 2.4 8.3E-05 25.4 -1.2 49 4-54 5-54 (66)
187 2ema_A Zinc finger protein 347 45.2 20 0.00068 18.4 2.8 14 6-19 11-24 (46)
188 3bua_E HSNM1B, DNA cross-LINK 45.1 4.5 0.00016 20.7 0.0 23 135-158 5-27 (36)
189 2cup_A Skeletal muscle LIM-pro 45.0 4.4 0.00015 25.9 -0.1 43 8-57 34-77 (101)
190 2lv9_A Histone-lysine N-methyl 44.8 6.2 0.00021 25.6 0.7 46 6-54 27-75 (98)
191 2ytm_A Zinc finger protein 28 44.4 20 0.00068 18.5 2.7 15 5-19 10-24 (46)
192 2ee8_A Protein ODD-skipped-rel 44.1 34 0.0012 21.2 4.3 15 5-19 15-29 (106)
193 2vnf_A ING 4, P29ING4, inhibit 44.0 6.3 0.00021 23.1 0.5 46 4-54 7-58 (60)
194 1zbd_B Rabphilin-3A; G protein 43.8 7.1 0.00024 27.0 0.9 50 5-55 53-107 (134)
195 1wd2_A Ariadne-1 protein homol 43.7 2.1 7.1E-05 25.3 -1.7 34 7-40 6-47 (60)
196 2wwb_B SEC61gamma, protein tra 43.3 51 0.0017 19.8 4.6 46 96-141 6-53 (68)
197 2en6_A Zinc finger protein 268 43.1 21 0.0007 18.4 2.6 15 5-19 10-24 (46)
198 1x61_A Thyroid receptor intera 43.0 37 0.0013 19.8 4.0 32 8-39 34-66 (72)
199 6rxn_A Rubredoxin; electron tr 42.5 7.1 0.00024 21.7 0.6 12 4-15 27-38 (46)
200 2zet_C Melanophilin; complex, 42.0 13 0.00044 26.3 2.0 47 5-55 66-117 (153)
201 2yso_A ZFP-95, zinc finger pro 41.7 24 0.00083 18.1 2.8 14 6-19 11-24 (46)
202 2emx_A Zinc finger protein 268 41.2 26 0.00089 17.7 2.8 14 6-19 9-22 (44)
203 2jvx_A NF-kappa-B essential mo 41.2 7.7 0.00026 19.2 0.5 14 7-20 3-16 (28)
204 3mpx_A FYVE, rhogef and PH dom 41.0 5.7 0.0002 32.5 0.0 32 7-38 375-410 (434)
205 2ytg_A ZFP-95, zinc finger pro 41.0 16 0.00056 18.8 2.0 14 6-19 11-24 (46)
206 2em8_A Zinc finger protein 224 40.3 19 0.00064 18.6 2.2 15 5-19 10-24 (46)
207 1wfh_A Zinc finger (AN1-like) 39.8 24 0.0008 21.1 2.6 29 4-32 12-41 (64)
208 2drp_A Protein (tramtrack DNA- 39.6 24 0.00081 19.8 2.7 41 5-56 8-50 (66)
209 2emp_A Zinc finger protein 347 39.3 20 0.00068 18.4 2.2 14 6-19 11-24 (46)
210 2emh_A Zinc finger protein 484 39.1 21 0.00072 18.3 2.2 14 6-19 11-24 (46)
211 1wep_A PHF8; structural genomi 38.9 18 0.00063 22.2 2.2 50 6-56 11-64 (79)
212 1e8j_A Rubredoxin; iron-sulfur 38.8 12 0.00039 21.4 1.1 12 4-15 33-44 (52)
213 2eoo_A ZFP-95, zinc finger pro 38.6 20 0.00069 18.4 2.1 14 6-19 11-24 (46)
214 1erd_A Pheromone ER-2; NMR {Eu 38.0 6.4 0.00022 20.3 -0.1 17 22-38 9-25 (40)
215 2dlq_A GLI-kruppel family memb 38.0 41 0.0014 21.3 4.0 15 5-19 5-19 (124)
216 2puy_A PHD finger protein 21A; 37.7 3.9 0.00013 23.9 -1.1 49 6-56 4-53 (60)
217 2jrp_A Putative cytoplasmic pr 37.6 0.9 3.1E-05 28.7 -4.1 41 8-58 3-43 (81)
218 1rh5_B Preprotein translocase 37.5 39 0.0013 20.7 3.4 28 96-123 7-34 (74)
219 2ffw_A Midline-1; B-BOX, ring 37.3 26 0.0009 21.4 2.7 32 5-36 28-62 (78)
220 2ytt_A Zinc finger protein 473 37.2 17 0.0006 18.7 1.7 15 5-19 10-24 (46)
221 1iml_A CRIP, cysteine rich int 36.3 26 0.0009 20.8 2.6 44 6-56 26-71 (76)
222 2kn9_A Rubredoxin; metalloprot 36.1 13 0.00043 23.4 1.0 12 4-15 57-68 (81)
223 1fp0_A KAP-1 corepressor; PHD 36.1 8.6 0.00029 24.6 0.3 48 5-54 23-71 (88)
224 3c5k_A HD6, histone deacetylas 35.8 15 0.00053 24.3 1.5 26 7-32 24-49 (109)
225 2yu8_A Zinc finger protein 347 34.7 21 0.00072 18.3 1.8 15 5-19 10-24 (46)
226 2e6r_A Jumonji/ARID domain-con 34.5 2.8 9.6E-05 27.0 -2.3 51 4-55 13-66 (92)
227 2ep3_A Zinc finger protein 484 34.5 48 0.0016 16.8 3.4 14 6-19 11-24 (46)
228 2d8x_A Protein pinch; LIM doma 34.3 25 0.00087 20.4 2.2 10 9-18 7-16 (70)
229 1yk4_A Rubredoxin, RD; electro 33.8 11 0.00039 21.4 0.5 12 4-15 32-43 (52)
230 1llm_C Chimera of ZIF23-GCN4; 33.0 20 0.00069 21.6 1.7 40 6-56 2-41 (88)
231 2rsd_A E3 SUMO-protein ligase 33.0 3.9 0.00013 24.6 -1.7 51 3-54 6-64 (68)
232 4rxn_A Rubredoxin; electron tr 32.8 12 0.00042 21.5 0.5 12 4-15 33-44 (54)
233 2v3b_B Rubredoxin 2, rubredoxi 32.7 12 0.00041 21.6 0.5 12 4-15 33-44 (55)
234 1q16_C Cytochrome B-NR, respir 32.1 1.5E+02 0.0051 21.7 7.6 53 131-183 60-117 (225)
235 2yt5_A Metal-response element- 32.0 3.9 0.00013 24.3 -1.8 54 3-56 2-62 (66)
236 2ku7_A MLL1 PHD3-CYP33 RRM chi 31.9 55 0.0019 21.5 4.0 33 24-56 7-45 (140)
237 1wii_A Hypothetical UPF0222 pr 31.8 8.8 0.0003 24.3 -0.2 41 2-57 18-58 (85)
238 1dx8_A Rubredoxin; electron tr 31.1 13 0.00045 22.6 0.5 9 48-56 42-50 (70)
239 2csh_A Zinc finger protein 297 31.1 38 0.0013 21.2 2.9 12 45-56 64-75 (110)
240 2ct1_A Transcriptional repress 31.1 47 0.0016 19.2 3.1 41 5-56 13-55 (77)
241 1wg2_A Zinc finger (AN1-like) 30.7 41 0.0014 20.0 2.6 28 5-32 13-41 (64)
242 2em2_A Zinc finger protein 28 30.0 53 0.0018 16.6 2.9 14 6-19 11-24 (46)
243 2a20_A Regulating synaptic mem 29.9 19 0.00065 21.1 1.0 32 3-34 5-40 (62)
244 2ku3_A Bromodomain-containing 29.6 37 0.0013 20.4 2.4 49 4-55 13-66 (71)
245 2ww9_B Protein transport prote 29.1 66 0.0023 20.0 3.5 27 97-123 21-47 (80)
246 1x4i_A Inhibitor of growth pro 29.1 32 0.0011 20.7 2.0 49 3-56 2-56 (70)
247 2lx0_A Membrane fusion protein 28.4 58 0.002 15.8 2.9 23 149-171 6-28 (32)
248 1f2i_G Fusion of N-terminal 17 28.1 39 0.0013 19.2 2.4 12 45-56 48-59 (73)
249 2ctd_A Zinc finger protein 512 27.5 59 0.002 20.2 3.3 12 45-56 61-72 (96)
250 1x6h_A Transcriptional repress 27.5 59 0.002 18.9 3.2 41 5-56 13-57 (86)
251 1jb0_I Photosystem 1 reaction 27.2 51 0.0017 17.4 2.3 27 147-173 9-35 (38)
252 2jmi_A Protein YNG1, ING1 homo 27.1 20 0.0007 22.8 0.9 46 4-54 23-75 (90)
253 1x4v_A Hypothetical protein LO 26.9 49 0.0017 19.5 2.5 28 5-32 10-40 (63)
254 2cor_A Pinch protein; LIM doma 25.8 29 0.00098 21.0 1.4 20 7-26 15-34 (79)
255 1wfp_A Zinc finger (AN1-like) 25.6 49 0.0017 20.3 2.4 28 5-32 23-51 (74)
256 1x4w_A Hypothetical protein FL 25.6 19 0.00064 21.7 0.5 28 5-32 13-44 (67)
257 2cur_A Skeletal muscle LIM-pro 25.1 60 0.002 18.7 2.8 11 26-36 51-61 (69)
258 1x62_A C-terminal LIM domain p 25.0 41 0.0014 20.1 2.1 40 5-57 13-52 (79)
259 1x63_A Skeletal muscle LIM-pro 24.8 43 0.0015 20.1 2.2 10 9-18 17-26 (82)
260 4gut_A Lysine-specific histone 24.5 50 0.0017 29.5 3.2 35 7-41 13-57 (776)
261 1wfe_A Riken cDNA 2310008M20 p 24.4 42 0.0014 21.2 2.0 28 5-32 23-53 (86)
262 3v43_A Histone acetyltransfera 24.2 14 0.00049 24.4 -0.3 29 25-54 83-111 (112)
263 2kmk_A Zinc finger protein GFI 23.6 38 0.0013 19.6 1.7 11 46-56 57-67 (82)
264 1a1h_A QGSR zinc finger peptid 23.4 38 0.0013 20.1 1.7 11 46-56 62-72 (90)
265 1wyh_A SLIM 2, skeletal muscle 23.0 64 0.0022 18.6 2.7 10 9-18 7-16 (72)
266 2l3k_A Rhombotin-2, linker, LI 22.6 71 0.0024 21.0 3.0 34 7-40 36-71 (123)
267 2vpb_A Hpygo1, pygopus homolog 22.3 41 0.0014 19.8 1.6 49 4-53 5-64 (65)
268 2l43_A N-teminal domain from h 22.0 53 0.0018 20.6 2.2 49 5-56 23-76 (88)
269 1wev_A Riken cDNA 1110020M19; 21.9 5.3 0.00018 25.4 -2.7 52 6-57 15-74 (88)
270 1nyp_A Pinch protein; LIM doma 21.7 44 0.0015 19.0 1.7 15 9-23 7-21 (66)
271 1x64_A Alpha-actinin-2 associa 21.5 60 0.0021 19.9 2.4 40 5-57 23-62 (89)
272 2d9h_A Zinc finger protein 692 20.9 33 0.0011 19.9 1.0 42 5-57 5-49 (78)
273 1j2o_A FLIN2, fusion of rhombo 20.7 78 0.0027 20.5 2.9 35 6-40 29-66 (114)
274 2d8z_A Four and A half LIM dom 20.7 93 0.0032 17.8 3.0 11 26-36 51-61 (70)
275 2uzg_A Ubiquitin carboxyl-term 20.5 25 0.00086 22.6 0.4 27 6-32 24-53 (97)
276 2dar_A PDZ and LIM domain prot 20.3 38 0.0013 20.9 1.2 38 7-57 25-62 (90)
277 2k5c_A Uncharacterized protein 20.2 46 0.0016 20.9 1.5 12 46-57 51-62 (95)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.62 E-value=6.8e-16 Score=100.12 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=47.2
Q ss_pred CCCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 1 MEGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 1 ~~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
++..++++.|+||++.+.+|+.++|||+||..|+.+|+..+. ..||.||+++.
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~----~~CP~C~~~~~ 54 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGH----KTCPKSQETLL 54 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTC----CBCTTTCCBCS
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCc----CCCCCCcCCCC
Confidence 456789999999999999999999999999999999997633 39999999884
No 2
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.59 E-value=3.6e-15 Score=99.69 Aligned_cols=52 Identities=19% Similarity=0.521 Sum_probs=45.9
Q ss_pred CCCCCCcccccccccccCcEEcc-CCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~-C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
+..++++.|+||++.+.+|+.++ |||+||..|+.+|+.... ...||.||+++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD---EHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT---TCCCTTTCCSS
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC---CCcCcCCCCcC
Confidence 35678899999999999999999 999999999999998643 24999999986
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.57 E-value=4.8e-15 Score=97.79 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=46.3
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
+..++++.||||++.+.+||+++|||+||..||.+||.... .||.||+++.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~-----~cP~~~~~l~ 59 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP-----TDPFNRQMLT 59 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCS-----BCTTTCCBCC
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCC-----CCCCCcCCCC
Confidence 35678999999999999999999999999999999998643 9999999884
No 4
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.6e-15 Score=94.03 Aligned_cols=52 Identities=27% Similarity=0.588 Sum_probs=46.8
Q ss_pred CCCCCCcccccccccccCcEEc-cCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~-~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
+..++++.|+||++.+.+|+.+ +|||+||..|+.+|++... .||.||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-----~CP~Cr~~~~~ 62 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN-----RCPKCNIVVHQ 62 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCS-----SCTTTCCCCCS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCC-----cCCCcCcccCc
Confidence 4567889999999999999997 8999999999999998754 99999999864
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.2e-15 Score=93.90 Aligned_cols=52 Identities=27% Similarity=0.618 Sum_probs=45.7
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
+..++++.|+||++.+.+|+.++|||+||..|+.+|++... ..||.||+++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~ 61 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSS----PKCTACQESIV 61 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSS----CCCTTTCCCCC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCc----CCCCCCCcCCC
Confidence 46688899999999999999999999999999999996332 38999999874
No 6
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.54 E-value=1e-14 Score=99.01 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=45.2
Q ss_pred CCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
..++++.||||++.+.+||.++|||+||..||.+||.... .||.||++++
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~-----~cP~~~~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP-----TDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCS-----BCSSSCCBCC
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCC-----CCCCCCCCCC
Confidence 4578899999999999999999999999999999998533 9999999884
No 7
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.53 E-value=5.9e-15 Score=104.02 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=43.6
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
++++.|+||++.+.+|+.++|||+||..|+.+|+.... ..||.||+++.
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQV----FSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC----CBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCc----CCCCCCCccCC
Confidence 45688999999999999999999999999999998543 39999999884
No 8
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.53 E-value=5.1e-15 Score=95.10 Aligned_cols=52 Identities=19% Similarity=0.521 Sum_probs=46.0
Q ss_pred CCCCCCcccccccccccCcEEcc-CCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~-C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
+..++++.|+||++.+.+|+.++ |||+||..|+.+|++... ...||.||+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---~~~CP~Cr~~~ 62 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD---EHTCPTCHQND 62 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS---SSCCSSSCCSS
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC---CCcCCCCCCcC
Confidence 45678899999999999999999 999999999999998753 23899999975
No 9
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.53 E-value=1.8e-14 Score=97.47 Aligned_cols=50 Identities=12% Similarity=-0.081 Sum_probs=45.5
Q ss_pred CCCCCcccccccccccCcEEccCC-CcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQANCS-HWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~~C~-H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
..++++.||||++++.+||.++|| |+||..||.+||.... .||.||+++.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~-----~cP~~~~~l~ 68 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-----TDPFNRSPLT 68 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSC-----BCTTTCSBCC
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCC-----CCCCCCCCCC
Confidence 457889999999999999999999 9999999999998643 9999999884
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=92.91 Aligned_cols=54 Identities=24% Similarity=0.670 Sum_probs=46.0
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
+..++++.|+||++.+.+|+.++|||.||..|+.+|++... +...||.||+++.
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC--GFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC--SCCCCSSSCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC--CCCCCCCCCCcCC
Confidence 35578899999999999999999999999999999987422 2349999999884
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.5e-14 Score=94.46 Aligned_cols=50 Identities=24% Similarity=0.674 Sum_probs=45.0
Q ss_pred CCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
..++.+.|+||++.+.+|+.++|||+||..|+.+|++... .||.||+++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATP-----RCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCS-----BCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCC-----cCCCcCcccc
Confidence 3456789999999999999999999999999999998754 9999999884
No 12
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=98.73 Aligned_cols=49 Identities=22% Similarity=0.484 Sum_probs=44.4
Q ss_pred CCCcccccccccccCcEE-ccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~-~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
++++.|+||++.+.+|+. ++|||+||..||.+|+.... ..||.||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~----~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR----AQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC----SBCTTTCCBCC
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc----CCCCCCCCcCC
Confidence 467899999999999999 99999999999999999863 29999999884
No 13
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.50 E-value=4.7e-15 Score=106.50 Aligned_cols=48 Identities=31% Similarity=0.704 Sum_probs=43.5
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
++++.|+||.+.+.+|+.++|||+||..|+.+|+.... .||.||+++.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~ 98 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-----ECPICRKDIK 98 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCS-----BCTTTCCBCC
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCC-----cCCCCCCcCC
Confidence 35678999999999999999999999999999998755 8999999884
No 14
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=88.05 Aligned_cols=49 Identities=27% Similarity=0.703 Sum_probs=42.2
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~C 52 (187)
+..++++.|+||++.+.+|+.++|||+||..|+.+|++... +...||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC--GFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS--SCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC--CCCcCcCC
Confidence 35578899999999999999999999999999999998632 23489998
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.5e-14 Score=92.04 Aligned_cols=51 Identities=29% Similarity=0.570 Sum_probs=45.2
Q ss_pred CCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
...++..|+||++.+.+|+.++|||.||..|+.+|+.... .||+||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-----~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-----RCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSS-----BCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCC-----cCcCcCchhCH
Confidence 3467789999999999999999999999999999887654 99999998853
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=3.7e-14 Score=92.97 Aligned_cols=56 Identities=30% Similarity=0.650 Sum_probs=47.3
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCC-CCCCCCCcccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGS-TLQACRCPLCRRRIT 57 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~-~~~~~~Cp~Cr~~~~ 57 (187)
+..++++.|+||++.+.+|+.++|||+||..|+.+|+.... ..+...||.||+++.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 34578899999999999999999999999999999998842 112359999999885
No 17
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.48 E-value=5.8e-15 Score=95.75 Aligned_cols=56 Identities=20% Similarity=0.489 Sum_probs=47.3
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCC--CCCCCCCcccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGS--TLQACRCPLCRRRIT 57 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~--~~~~~~Cp~Cr~~~~ 57 (187)
+..++++.|+||++.+.+|+.++|||+||..|+.+|++... ..+...||.||+++.
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 45678899999999999999999999999999999987631 112459999999885
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.47 E-value=2.1e-14 Score=91.16 Aligned_cols=50 Identities=26% Similarity=0.783 Sum_probs=45.3
Q ss_pred CCCCCcccccccccccCc-------EEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 3 GPPCGDVCSVCHGNFNVP-------CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~p-------v~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
.++++..|+||++.+.+| +.++|||.||..|+.+|++.+. .||.||+++.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-----TCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-----BCTTTCCBCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-----CCCCCCCccC
Confidence 467889999999999888 8899999999999999998765 9999999885
No 19
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.46 E-value=4.4e-14 Score=102.80 Aligned_cols=49 Identities=22% Similarity=0.617 Sum_probs=43.8
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
++++.|+||++.+.+|+.++|||+||..|+.+|+.... ..||.||.++.
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~ 124 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQV----FSCPACRHDLG 124 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC----CBCTTTCCBCC
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCC----CcCCCCCccCC
Confidence 35689999999999999999999999999999998643 38999999884
No 20
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.6e-14 Score=89.51 Aligned_cols=50 Identities=26% Similarity=0.783 Sum_probs=44.6
Q ss_pred CCCCCcccccccccccCc-------EEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 3 GPPCGDVCSVCHGNFNVP-------CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~p-------v~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
..+++..|+||++.+.+| +.++|||.||..|+.+|+.... .||+||++++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-----TCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-----SCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-----CCCCCCCccC
Confidence 457789999999999887 8899999999999999998855 9999999874
No 21
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.4e-14 Score=92.61 Aligned_cols=56 Identities=21% Similarity=0.539 Sum_probs=46.8
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCC-CCCCCCCcccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGS-TLQACRCPLCRRRIT 57 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~-~~~~~~Cp~Cr~~~~ 57 (187)
+..++++.|+||.+.+.+|+.++|||+||..|+.+|+..+. ..+...||.||+.+.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 45578899999999999999999999999999999998721 012349999999886
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.4e-14 Score=92.58 Aligned_cols=54 Identities=22% Similarity=0.591 Sum_probs=46.7
Q ss_pred CCCCCCcccccccccccC----cEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNV----PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~----pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
+..++.+.|+||++.+.+ |+.++|||+||..|+.+|++... +...||.||+++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI--NGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS--SCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC--CCcCCCCCCCccc
Confidence 456788999999999998 99999999999999999998762 2349999999874
No 23
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.45 E-value=8.6e-14 Score=87.65 Aligned_cols=53 Identities=23% Similarity=0.563 Sum_probs=45.7
Q ss_pred CCCcccccccccccCc-EEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccccccCC
Q 029826 5 PCGDVCSVCHGNFNVP-CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPN 62 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~p-v~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~~~~ 62 (187)
+++..|+||++.+.+| +.++|||.||..|+.+|++.+. .||.||+++......
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-----~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-----TCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC-----STTTTCCCCCCEECC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcC-----cCcCCChhhHhhhhc
Confidence 5677999999999997 7889999999999999998765 999999999765443
No 24
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.44 E-value=5.4e-14 Score=96.73 Aligned_cols=50 Identities=26% Similarity=0.642 Sum_probs=45.1
Q ss_pred CCCCcccccccccccCcEEc-cCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~-~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
.++++.|+||.+.+.+|+.+ +|||+||..|+.+|+..+. .||.||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-----~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSK-----YCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCS-----BCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCC-----cCcCCCccccc
Confidence 36789999999999999998 9999999999999998754 99999998854
No 25
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.43 E-value=8.2e-14 Score=94.30 Aligned_cols=48 Identities=29% Similarity=0.647 Sum_probs=43.1
Q ss_pred CCCcccccccccccCcEEc-cCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~-~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
++++.|+||.+.+.+|+.+ +|||+||..|+.+|+..+. .||.||+++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-----~CP~Cr~~~~ 68 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKT-----QCPTCCVTVT 68 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-----BCTTTCCBCC
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCC-----CCCCCCCcCC
Confidence 3568999999999999998 8999999999999998654 9999999884
No 26
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=2.2e-13 Score=86.09 Aligned_cols=54 Identities=22% Similarity=0.551 Sum_probs=45.0
Q ss_pred CCCCccccccccccc---CcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccccccCC
Q 029826 4 PPCGDVCSVCHGNFN---VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPN 62 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~---~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~~~~ 62 (187)
.+++..|+||++.+. .++.++|||.||..|+.+|+.... .||+||+++....+.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-----~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-----KCPICRVDIEAQLPS 67 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-----BCTTTCSBSCSCCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-----CCcCcCccccCcCCC
Confidence 356689999999774 467889999999999999998865 899999998765553
No 27
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.42 E-value=8.5e-15 Score=101.87 Aligned_cols=51 Identities=27% Similarity=0.669 Sum_probs=44.5
Q ss_pred CCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
.++++.|+||++.+.+|+.++|||+||..|+.+|+..+. ..||.||+++..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKAS----LCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTT----SBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCc----CCCCCCCcccCc
Confidence 356789999999999999999999999999999886533 399999998853
No 28
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=1.8e-13 Score=94.50 Aligned_cols=52 Identities=27% Similarity=0.691 Sum_probs=44.9
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
++.+.|+||.+.+.+|+.++|||+||..|+.+|+..+. +...||.||+++..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--GPSQCPLCKNDITK 70 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS--SSCCCTTTSCCCCT
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC--CCCCCcCCCCcCCH
Confidence 35679999999999999999999999999999998653 23589999998863
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=9.4e-14 Score=86.80 Aligned_cols=48 Identities=25% Similarity=0.716 Sum_probs=41.4
Q ss_pred CCcccccccc-cccCc----EEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 6 CGDVCSVCHG-NFNVP----CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 6 ~~~~C~iC~~-~~~~p----v~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
++..|+||++ .+.+| +.++|||+||..|+.+|+..+. ..||.||+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA----GNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS----SSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCC----CcCCCCCCccc
Confidence 4678999999 88888 5689999999999999987643 38999999884
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=84.08 Aligned_cols=49 Identities=33% Similarity=0.796 Sum_probs=41.7
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~C 52 (187)
+..+++..|+||++.+.+|+.++|||+||..|+.+|+.... +...||.|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE--RDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC--CSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC--CCCCCCCC
Confidence 45678899999999999999999999999999999976522 23489988
No 31
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=91.10 Aligned_cols=53 Identities=17% Similarity=0.484 Sum_probs=44.4
Q ss_pred CCCCCcccccccccccCcEEcc-CCCcccHHHHHHHHHhC-CCCCCCCCcc--cccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHG-STLQACRCPL--CRRR 55 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~~-C~H~fC~~Ci~~~~~~~-~~~~~~~Cp~--Cr~~ 55 (187)
..++++.||||++.+.+||.++ |||+||..||.+||... ...+...||. |+..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3578899999999999999996 99999999999999874 1123459999 9865
No 32
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.41 E-value=8.9e-14 Score=86.36 Aligned_cols=47 Identities=26% Similarity=0.784 Sum_probs=42.4
Q ss_pred CCcccccccccccCc-------EEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 6 CGDVCSVCHGNFNVP-------CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 6 ~~~~C~iC~~~~~~p-------v~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
++..|+||++.+.+| +.++|||.||..|+.+|++.+. .||.||+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-----TCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-----BCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-----CCCCCCccCC
Confidence 568999999999887 8899999999999999998855 9999999884
No 33
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.40 E-value=1.5e-13 Score=96.01 Aligned_cols=52 Identities=21% Similarity=0.518 Sum_probs=46.3
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
+..++++.|+||++.+.+|+.++|||+||..|+.+|+..+.. .||.||.++.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~----~CP~Cr~~~~ 64 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGH----KCPVDNEILL 64 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCS----BCTTTCCBCC
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCC----CCCCCCCCcC
Confidence 345778999999999999999999999999999999987643 8999999884
No 34
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3e-13 Score=86.61 Aligned_cols=54 Identities=24% Similarity=0.558 Sum_probs=45.2
Q ss_pred CCCCCcccccccccccCcEEc---cCCCcccHHHHHHHHHhCCCCCCCCCcccccccccccC
Q 029826 3 GPPCGDVCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIP 61 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~---~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~~~ 61 (187)
..+++..|+||++.+.++..+ +|+|.||..|+.+|++... .||+||+++..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-----~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-----VCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-----BCTTTCCBCSSCCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-----cCCCcCcccccccc
Confidence 456788999999998776544 9999999999999998865 99999999865443
No 35
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.39 E-value=2.5e-13 Score=81.88 Aligned_cols=49 Identities=22% Similarity=0.591 Sum_probs=42.7
Q ss_pred CCCCcccccccccccC----cEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 4 PPCGDVCSVCHGNFNV----PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~----pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
..++..|+||++.+.+ ++.++|||.||..|+.+|++... .||+||+++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~ 54 (55)
T 2ecm_A 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-----RCPLCSGPSS 54 (55)
T ss_dssp CSCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC-----CCTTSCCSSC
T ss_pred CCCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC-----cCCCCCCcCC
Confidence 3567899999998865 77889999999999999999874 9999998773
No 36
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.39 E-value=2e-13 Score=82.37 Aligned_cols=48 Identities=29% Similarity=0.615 Sum_probs=42.0
Q ss_pred CCCCcccccccccccC---cEEcc-CCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 4 PPCGDVCSVCHGNFNV---PCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~---pv~~~-C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
.+++..|+||++.+.+ ++.++ |||.||..|+.+|++.+. .||+||+++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-----~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-----TCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC-----SCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC-----cCcCCCCEe
Confidence 4678899999999877 77887 999999999999987654 999999876
No 37
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.38 E-value=7.8e-14 Score=100.43 Aligned_cols=50 Identities=26% Similarity=0.650 Sum_probs=44.8
Q ss_pred CCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
..++++.|+||++.+.+|++++|||+||..|+.+|+..+. ..||.||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~----~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGP----QNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSC----EECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCC----CCCCCCCCcc
Confidence 4578899999999999999999999999999999997543 3899999976
No 38
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=87.22 Aligned_cols=51 Identities=27% Similarity=0.578 Sum_probs=44.5
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
+..+++..|+||++.+.+ +.++|||.||..|+.+|+.... .||.||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~~ 60 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHR-----NCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCS-----SCHHHHHCTTC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcC-----cCCCcCCcccC
Confidence 456788999999999998 9999999999999999887543 99999998853
No 39
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.37 E-value=5.2e-13 Score=105.81 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=45.0
Q ss_pred CCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
.++.+.||||.+.+.+||+++|||+||..||.+|+..... .||.||++++
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~----~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH----FNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCS----SCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCC----CCcCCCCCCc
Confidence 4678999999999999999999999999999999987542 5999999884
No 40
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.36 E-value=3.6e-13 Score=87.11 Aligned_cols=51 Identities=29% Similarity=0.702 Sum_probs=43.1
Q ss_pred CCCCCcccccccccccCc---EEccCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 3 GPPCGDVCSVCHGNFNVP---CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~p---v~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
...++..|+||++.+.++ +.++|||.||..|+.+|++... .||+||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-----~CP~Cr~~~~~ 64 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD-----SCPVCRKSLTG 64 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC-----SCTTTCCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC-----cCcCcCCccCC
Confidence 346678999999988765 4569999999999999997654 99999999864
No 41
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=4.1e-13 Score=86.25 Aligned_cols=49 Identities=24% Similarity=0.571 Sum_probs=43.0
Q ss_pred CCCCcccccccccccCc---EEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 4 PPCGDVCSVCHGNFNVP---CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~p---v~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
.+++..|+||++.+..+ +.++|+|.||..|+.+|++... .||+||+++.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-----~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-----TCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-----SCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-----cCcCcCCcCC
Confidence 35678999999998877 7789999999999999998865 9999999874
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.35 E-value=1e-12 Score=97.73 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=45.8
Q ss_pred CCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
..++.+.||||++.+.+||+++|||+||..||.+||..... .||.|+++++
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~----tcP~t~~~l~ 152 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH----FDPVTRSPLT 152 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCS----BCTTTCCBCC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCC----CCCCCcCCCC
Confidence 45788999999999999999999999999999999987531 7999999884
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.35 E-value=1.1e-12 Score=85.01 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=42.0
Q ss_pred CCCCCccccccccccc--CcEEcc--CCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 3 GPPCGDVCSVCHGNFN--VPCQAN--CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~--~pv~~~--C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
..+++..||||++.+. +++..+ |||+||..|+.++|.... ..||.||+++..
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~----~~CP~CR~~~~~ 62 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN----GLCPACRKPYPE 62 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSC----SBCTTTCCBCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCC----CCCCCCCCccCC
Confidence 4578899999999774 455555 999999999999986533 399999999864
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.35 E-value=3.3e-13 Score=99.60 Aligned_cols=49 Identities=27% Similarity=0.799 Sum_probs=43.0
Q ss_pred CCCcccccccccccCcEEc-cCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~-~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
++++.|+||.+.+.+|+.+ +|||+||..|+.+|+.... ..||.||.++.
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGN----KECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTC----CBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCc----CCCCCCCCcCC
Confidence 3567999999999999998 8999999999999998633 28999999884
No 45
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=1.3e-13 Score=83.67 Aligned_cols=48 Identities=23% Similarity=0.547 Sum_probs=41.4
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
|..++++.|+||++.+.+|+.++|||+||..|+.+ . ...||.||+++.
T Consensus 1 eee~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~-----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 1 EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---S-----GMQCPICQAPWP 48 (56)
T ss_dssp CCSCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---S-----SSSCSSCCSSSS
T ss_pred CCcccCCCceEeCCccCCeEEcCCCCcccHHHHcc---C-----CCCCCcCCcEee
Confidence 34578899999999999999999999999999876 1 238999999884
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.34 E-value=5.1e-13 Score=92.93 Aligned_cols=50 Identities=26% Similarity=0.601 Sum_probs=44.2
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
++++.|+||.+.+.+|+.++|||+||..|+.+|+..... .||.||+++..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~----~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGS----YCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCS----BCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcC----cCCCCCCCCCH
Confidence 356899999999999999999999999999999987432 89999998853
No 47
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.33 E-value=6.9e-13 Score=88.44 Aligned_cols=48 Identities=21% Similarity=0.650 Sum_probs=42.1
Q ss_pred CCCcccccccccccC---cEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNV---PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~---pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
+++..|+||++.+.. ++.++|||.||..|+.+|++... .||+||+++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-----~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-----TCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-----BCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-----cCcCcCccCC
Confidence 567889999998876 77899999999999999997654 9999999874
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.30 E-value=2.9e-12 Score=88.75 Aligned_cols=54 Identities=22% Similarity=0.518 Sum_probs=43.0
Q ss_pred CCcccccccccccCcE------------------EccCCCcccHHHHHHHHHhCCCCCCCCCcccccccccc
Q 029826 6 CGDVCSVCHGNFNVPC------------------QANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLL 59 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv------------------~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~ 59 (187)
++..|+||++.+.+|. .++|+|.||..||.+|+..........||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4569999999987664 67899999999999999654322345999999988654
No 49
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.29 E-value=1.6e-12 Score=96.27 Aligned_cols=53 Identities=21% Similarity=0.491 Sum_probs=47.0
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
+..++++.|+||++.+.+|+.++|||+||..|+.+|+..+.. .||.||.+++.
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~----~CP~Cr~~~~~ 65 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGH----KCPVDNEILLE 65 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCS----BCTTTCCBCCG
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCC----CCCCCccCcch
Confidence 456788999999999999999999999999999999987542 99999998853
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=9.4e-13 Score=91.78 Aligned_cols=46 Identities=28% Similarity=0.605 Sum_probs=41.8
Q ss_pred CCCcccccccccccCcEEc-cCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~-~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
++++.|+||++.+.+|+.+ +|||+||..|+.+|+. . .||.||.++.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~-----~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--T-----GCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--T-----BCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--C-----CCcCCCCcCc
Confidence 5678999999999999999 8999999999999887 2 8999999873
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.27 E-value=1.4e-12 Score=92.23 Aligned_cols=50 Identities=24% Similarity=0.716 Sum_probs=44.6
Q ss_pred CCCCcccccccccccCc-------EEccCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 4 PPCGDVCSVCHGNFNVP-------CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~p-------v~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
..+++.|+||++.+.+| +.++|||+||..|+.+|++.+. .||.||+.+..
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~~ 60 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-----TCPTCRKKINH 60 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-----BCTTTCCBCTT
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-----CCCCCCCcCcc
Confidence 35788999999999998 9999999999999999998765 99999999863
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.23 E-value=3.1e-12 Score=79.69 Aligned_cols=52 Identities=23% Similarity=0.622 Sum_probs=44.8
Q ss_pred CCCCcccccccccccCcEEc--cCCCc-ccHHHHHHHHHhCCCCCCCCCccccccccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQA--NCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLLI 60 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~--~C~H~-fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~~ 60 (187)
.+++..|+||++...+++.+ +|||. ||..|+.++++.+. .||+||+++....
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-----~CPiCR~~i~~~i 59 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK-----PCPVCRQPIQMIV 59 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTC-----CCTTTCCCCCEEE
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCC-----cCCCcCcchhceE
Confidence 35678999999999999977 99999 89999999987654 8999999986543
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.22 E-value=2e-12 Score=82.93 Aligned_cols=47 Identities=26% Similarity=0.610 Sum_probs=41.1
Q ss_pred CCCcccccccccccCcEEccCCCc-ccHHHHHHHHHhCCCCCCCCCccccccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLLI 60 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~-fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~~ 60 (187)
+++..|+||++.+.+|+.++|||. ||..|+.+| . .||.||+++....
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~-----~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----D-----KCPMCYTVITFKQ 69 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----S-----BCTTTCCBCSEEE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----c-----cCCCcCcCccCcE
Confidence 356789999999999999999999 999999876 2 9999999986543
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.21 E-value=4e-12 Score=78.95 Aligned_cols=52 Identities=25% Similarity=0.526 Sum_probs=44.6
Q ss_pred CCCCcccccccccccCcEEc--cCCCc-ccHHHHHHHHHhCCCCCCCCCccccccccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQA--NCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLLI 60 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~--~C~H~-fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~~ 60 (187)
.+.+..|+||++...+++.+ +|||. ||..|+.++++.+. .||+||+++....
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-----~CPiCR~~i~~~i 58 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGA-----SCPICKKEIQLVI 58 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTC-----BCTTTCCBCCEEE
T ss_pred CCcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCC-----cCCCcCchhhceE
Confidence 34567899999999999887 99998 99999999987654 9999999986544
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=80.19 Aligned_cols=48 Identities=27% Similarity=0.598 Sum_probs=40.0
Q ss_pred CCCcccccccccccC--------------cEEc-cCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNV--------------PCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~--------------pv~~-~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
.++..|+||++.+.+ ++.+ +|||.|+..||.+|++.+. .||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-----~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-----RCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-----BCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-----CCCCcCCCcc
Confidence 356789999998866 4455 4999999999999998765 9999999873
No 56
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1.5e-11 Score=95.94 Aligned_cols=53 Identities=21% Similarity=0.435 Sum_probs=45.3
Q ss_pred CCCCCCcccccccccccCcEEc-cCCCcccHHHHHHHHHhCCCCCCCCCcc--cccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPL--CRRRIT 57 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~-~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~--Cr~~~~ 57 (187)
+....++.||||++.+.+||+. .|||+||+.||.+||... +...||. |++.+.
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~---~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY---TTRDCPQAACSQVVS 231 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC---SCEECSGGGCSCEEC
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC---CCCCCCcccccCcCc
Confidence 3456789999999999999985 899999999999999863 2358999 999773
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=8.3e-12 Score=80.15 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=40.3
Q ss_pred CCCcccccccccccCcEEccCCCc-ccHHHHHHHHHhCCCCCCCCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLLIP 61 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~-fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~~~ 61 (187)
+++..|+||++.+.+|+.++|||. ||..|+.+ .. .||.||+++.....
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~-----~CP~Cr~~i~~~~~ 71 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VD-----KCPMCYTVITFKQK 71 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CS-----BCTTTCCBCCCCCB
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CC-----CCccCCceecCcEE
Confidence 346789999999999999999999 99999963 12 99999999865443
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.14 E-value=2.4e-11 Score=100.10 Aligned_cols=49 Identities=24% Similarity=0.556 Sum_probs=42.9
Q ss_pred CCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
+...|+||.+.+.+|+.++|||.||..|+.+|..... ..||.||+++..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~----~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEG----QGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTC----SBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCC----CCCCCCCCccCC
Confidence 3479999999999999999999999999999988433 299999999864
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=3.1e-11 Score=85.29 Aligned_cols=49 Identities=24% Similarity=0.744 Sum_probs=43.9
Q ss_pred CCCCcccccccccccCc-------EEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 4 PPCGDVCSVCHGNFNVP-------CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~p-------v~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
.+++..|+||++.+.++ +.++|||.||..|+.+|++... .||.||+++.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-----TCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-----BCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-----CCCCCCCcCC
Confidence 36778999999999887 8899999999999999998865 9999999884
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.05 E-value=1.4e-10 Score=79.25 Aligned_cols=46 Identities=26% Similarity=0.467 Sum_probs=39.3
Q ss_pred CCcccccccccccCc------------------EEccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 6 CGDVCSVCHGNFNVP------------------CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 6 ~~~~C~iC~~~~~~p------------------v~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
++..|+||++.+.++ +.++|+|.|+..||.+|+..+. .||+||+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-----~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-----VCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-----BCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-----cCcCCCCcc
Confidence 467899999988765 3478999999999999998755 999999986
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.7e-10 Score=72.62 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=42.6
Q ss_pred CCCcccccccccccCcEEccCCCc-ccHHHHHHHHHhCCCCCCCCCcccccccccccCCC
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPND 63 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~-fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~~~~~ 63 (187)
+++..|+||++...+++.++|||. ||..|+.. .. .||+||+++.......
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~-----~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQ-----QCPMCRQFVQESFALS 63 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CS-----SCTTTCCCCCCEECCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CC-----CCCCCCcchhceEEee
Confidence 457899999999999999999999 99999984 12 8999999997655544
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=9.2e-11 Score=78.45 Aligned_cols=52 Identities=23% Similarity=0.539 Sum_probs=42.2
Q ss_pred CCCCcccccccccccCcEEc---cCCCcccHHHHHHHHHhCC---CCCCCCCcc--cccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGS---TLQACRCPL--CRRR 55 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~---~C~H~fC~~Ci~~~~~~~~---~~~~~~Cp~--Cr~~ 55 (187)
..+.++|+||++.+..|..+ +|||.||..|+.++|..+- ....+.||. |+..
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 2 SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46788999999999888654 6999999999999998631 113469999 9987
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.00 E-value=6.8e-11 Score=76.65 Aligned_cols=50 Identities=24% Similarity=0.530 Sum_probs=42.2
Q ss_pred CCCcccccccccccCcEEccCCCc-ccHHHHHHHHHhCCCCCCCCCcccccccccccCCC
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPND 63 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~-fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~~~~~ 63 (187)
+++..|+||++...+++.++|||. ||..|+.++ . .||+||+++.......
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~-----~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----Q-----SCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----S-----BCTTTCCBCCEEEECB
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----C-----cCCCCCchhhCeEEEE
Confidence 356789999999999999999999 999999753 1 8999999998754443
No 64
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.93 E-value=5e-10 Score=68.87 Aligned_cols=46 Identities=9% Similarity=0.131 Sum_probs=41.7
Q ss_pred CcccccccccccCcEEc-cCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 7 GDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 7 ~~~C~iC~~~~~~pv~~-~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
.+.||||++.+.+||.+ ++||+|+++||++|++... .||..+++++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~-----~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-----NDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS-----BCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC-----CCcCCcCCCC
Confidence 47899999999999999 8999999999999998754 7999999885
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.82 E-value=4.5e-10 Score=77.91 Aligned_cols=46 Identities=28% Similarity=0.546 Sum_probs=0.9
Q ss_pred CCcccccccccccCcE------------------EccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 6 CGDVCSVCHGNFNVPC------------------QANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv------------------~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
++..|+||++.+.++. .++|+|.|+..||.+|+.... .||+||+++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-----~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-----VCPLDNREW 110 (117)
T ss_dssp CC-------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-----cCCCCCCee
Confidence 4568999999887642 247999999999999998865 999999986
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.5e-08 Score=65.55 Aligned_cols=53 Identities=23% Similarity=0.612 Sum_probs=43.3
Q ss_pred CCCCCcccccccccc--cCcEEccCC-----CcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 3 GPPCGDVCSVCHGNF--NVPCQANCS-----HWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~--~~pv~~~C~-----H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
.+.++..|.||++.+ .++..++|+ |.|...|+.+|+..+. ...||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~---~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD---TRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC---CSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC---CCCCCCCCCeeec
Confidence 346678999999876 467888996 9999999999998753 2389999998853
No 67
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=2.8e-07 Score=58.54 Aligned_cols=52 Identities=19% Similarity=0.497 Sum_probs=41.5
Q ss_pred CCCCcccccccccccCcEEc-cCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~-~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
++....|.||.+.+..-..- .|+|.|-..|+.+|++.... ..||+||++...
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~---~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAE---PRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSS---CCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCC---CCCCCCcCcCCC
Confidence 35567899999988765544 69999999999999987531 289999988754
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.37 E-value=2.4e-07 Score=61.48 Aligned_cols=46 Identities=26% Similarity=0.611 Sum_probs=37.4
Q ss_pred cccccccccc-CcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 9 VCSVCHGNFN-VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 9 ~C~iC~~~~~-~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
-|++|.--+. ...+++|+|.||.+|+..|.+++.. .||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k----~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDK----MCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCC----BCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCC----CCcCcCCeeee
Confidence 4788876444 4678899999999999998876553 99999999974
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.13 E-value=6.2e-07 Score=72.43 Aligned_cols=54 Identities=17% Similarity=0.354 Sum_probs=39.6
Q ss_pred CCCcccccccccccC----cE----EccCCCcccHHHHHHHHHhCCCCC------CCCCccccccccc
Q 029826 5 PCGDVCSVCHGNFNV----PC----QANCSHWFCGNCIMLVWDHGSTLQ------ACRCPLCRRRITL 58 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~----pv----~~~C~H~fC~~Ci~~~~~~~~~~~------~~~Cp~Cr~~~~~ 58 (187)
+...+|+||.+.+.+ |. ...|+|.|...|+.+|++....+. .-.||+||++++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 355689999997765 32 246999999999999998642110 1189999998853
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.09 E-value=3e-06 Score=51.54 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=41.2
Q ss_pred CCCCCCCcccccccccccCcEEccCC--C---cccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 1 MEGPPCGDVCSVCHGNFNVPCQANCS--H---WFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 1 ~~~~~~~~~C~iC~~~~~~pv~~~C~--H---~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
|| .++...|.||++...++...||. | .|-..|+.+|+..+. ...||+|+.++.
T Consensus 1 ~e-~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~---~~~C~~C~~~~~ 58 (60)
T 1vyx_A 1 ME-DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR---NTACQICGVVYN 58 (60)
T ss_dssp CT-TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT---CSBCTTTCCBCC
T ss_pred CC-CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC---CCccCCCCCeee
Confidence 44 35667899999987777778855 4 789999999998643 239999998773
No 71
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.35 E-value=7.6e-05 Score=49.85 Aligned_cols=34 Identities=15% Similarity=0.509 Sum_probs=29.0
Q ss_pred CCccccccccc-ccCcEE--ccCCCcccHHHHHHHHH
Q 029826 6 CGDVCSVCHGN-FNVPCQ--ANCSHWFCGNCIMLVWD 39 (187)
Q Consensus 6 ~~~~C~iC~~~-~~~pv~--~~C~H~fC~~Ci~~~~~ 39 (187)
++..|++|.+. +.+|+. +.|+|+||..|+..++.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 46899999975 678888 89999999999998554
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.58 E-value=0.003 Score=48.80 Aligned_cols=51 Identities=18% Similarity=0.447 Sum_probs=40.8
Q ss_pred CCcccccccccccCcEEcc-CCCcccHHHHHHHHHhCCCCCCCCCcccccccccc
Q 029826 6 CGDVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLL 59 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv~~~-C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~ 59 (187)
.-..|.+|.++......-+ |+|.|-..|+..|++... ...||.|+.+...-
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~---~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA---EPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS---SCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC---CCCCCCCCCCCCCC
Confidence 4568999999988776654 999999999999997643 23999998876443
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.03 E-value=0.0097 Score=54.18 Aligned_cols=51 Identities=14% Similarity=-0.032 Sum_probs=45.5
Q ss_pred CCCCCCcccccccccccCcEEccCC-CcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCS-HWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~-H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
..+++.+.|||-.+++.+||.++-| ++|=+.+|++|+.... +||.=|++++
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~-----tdP~Tr~~L~ 937 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS-----TDPFNRMPLK 937 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-----BCTTTCCBCC
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCC-----CCCCCCCCCC
Confidence 3578899999999999999999998 6999999999998644 8999999885
No 74
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=95.64 E-value=0.0062 Score=38.47 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=37.3
Q ss_pred CCCCcccccccccccCcEEccC----CCcccHHHHHHHHHhCCCCCCCCCccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQANC----SHWFCGNCIMLVWDHGSTLQACRCPLC 52 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~~C----~H~fC~~Ci~~~~~~~~~~~~~~Cp~C 52 (187)
+...+.|.+|.+.+.+-....| .|.||..|-+.+++.+......-||.-
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 3456899999999887654444 699999999999988665556667653
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.46 E-value=0.11 Score=33.78 Aligned_cols=48 Identities=25% Similarity=0.735 Sum_probs=34.3
Q ss_pred cccccccccccCcEEccCC-CcccHHHHHHHHHhCCCCCCCCCcccccccccccCC
Q 029826 8 DVCSVCHGNFNVPCQANCS-HWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPN 62 (187)
Q Consensus 8 ~~C~iC~~~~~~pv~~~C~-H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~~~~ 62 (187)
+-|-.|.-..+ -.+.|. |-.|..|+...+..+. .||.|..++...+..
T Consensus 29 ~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~Sd-----rCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 29 QFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSN-----RCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSS-----EETTTTEECCCCSCT
T ss_pred ccChhhccccC--CeeeecchhhHHHHHHHHHhhcc-----CCcccCCcCCcceec
Confidence 34666665444 345555 8999999998877765 999999999764443
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.32 E-value=0.071 Score=43.53 Aligned_cols=48 Identities=19% Similarity=0.515 Sum_probs=35.3
Q ss_pred CcccccccccccCcEEcc-CCCcccHHH--HHHHHHhCCCCCCCCCcccccccc
Q 029826 7 GDVCSVCHGNFNVPCQAN-CSHWFCGNC--IMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 7 ~~~C~iC~~~~~~pv~~~-C~H~fC~~C--i~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
.+.||+-...+..|+... |.|.-|.+- +..+..+ ...+.||.|.+.+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~---~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQ---IPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHH---SCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhc---CCceeCCCCCcccC
Confidence 478999999999999765 999977653 3333333 34569999998774
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=90.56 E-value=0.092 Score=42.71 Aligned_cols=48 Identities=21% Similarity=0.627 Sum_probs=35.1
Q ss_pred CcccccccccccCcEEcc-CCCcccHH--HHHHHHHhCCCCCCCCCcccccccc
Q 029826 7 GDVCSVCHGNFNVPCQAN-CSHWFCGN--CIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 7 ~~~C~iC~~~~~~pv~~~-C~H~fC~~--Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
.+.||+-...+..|+... |.|.-|.+ -+.++..+ ...+.||.|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~---~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEK---KPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHH---SCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhh---CCCeECCCCCcccC
Confidence 468999999999999765 99996654 33333333 33569999998874
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.92 E-value=0.9 Score=28.91 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=37.8
Q ss_pred CCCCCCcccccccccccCcEEcc---CCCcccHHHHHHHHHhC-----------CCCCCCCCcccccccccccCC
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQAN---CSHWFCGNCIMLVWDHG-----------STLQACRCPLCRRRITLLIPN 62 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~---C~H~fC~~Ci~~~~~~~-----------~~~~~~~Cp~Cr~~~~~~~~~ 62 (187)
|++..+..|.||...- .-...+ |+-.|-..|+++.-.-+ ......+|+.| ..++.++..
T Consensus 10 e~~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C-enL~lLLtE 82 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC-DNINLLLTE 82 (89)
T ss_dssp CCCCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT-CCCCSSSCC
T ss_pred cCCCCCcccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccccc-chhhhhcch
Confidence 4667889999998532 333443 88899999998852111 11235699999 456555443
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.25 E-value=0.74 Score=27.89 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=34.7
Q ss_pred CCCCCcccccccccccCcEEc-cCCCcccHHHHHHHHHhCCCCCCCCCcccccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~-~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~ 55 (187)
.+..+..|.+|.+-- +-+.- .|...|...|+..-+.... .+...||.|+..
T Consensus 8 ~~~~~~~C~vC~~~~-~ll~Cd~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~~ 59 (66)
T 2lri_C 8 NLAPGARCGVCGDGT-DVLRCTHCAAAFHWRCHFPAGTSRP-GTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTCCCTTTSCCT-TCEECSSSCCEECHHHHCTTTCCCC-SSSCCCTTTTTC
T ss_pred CCCCCCCcCCCCCCC-eEEECCCCCCceecccCCCccCcCC-CCCEECccccCC
Confidence 456667899998632 21221 4889999999976554433 466899999654
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.62 E-value=2.3 Score=27.27 Aligned_cols=49 Identities=22% Similarity=0.584 Sum_probs=34.2
Q ss_pred CCccccccccccc----CcEEc---cCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 6 CGDVCSVCHGNFN----VPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 6 ~~~~C~iC~~~~~----~pv~~---~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
....|.||.+..- --+.. .|+-..|+.|.+--.+..+. .||.|+.+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q----~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQ----NCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCS----SCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCc----cccccCCcccc
Confidence 3468999998642 11222 47888999999765555443 99999988863
No 81
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=83.20 E-value=1.7 Score=29.99 Aligned_cols=50 Identities=22% Similarity=0.506 Sum_probs=31.9
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHH-----HHh-CCCCCCCCCccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLV-----WDH-GSTLQACRCPLCRR 54 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~-----~~~-~~~~~~~~Cp~Cr~ 54 (187)
..+..|.+|.+--.-..--.|-..||..|+.+- +.. ....+...|+.|+.
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345569999863221111269999999999864 222 12346679999954
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=79.98 E-value=0.48 Score=29.30 Aligned_cols=51 Identities=18% Similarity=0.410 Sum_probs=33.1
Q ss_pred CCCcccccccccccCcEEc---cCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~---~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
++...|++|...-..-.++ .|..+|-..|+..-.... ..+...||.|+..+
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~-~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPP-EEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCC-SSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCC-CCCCEEChhccCch
Confidence 4556799998764432333 488889999985422221 13567999997765
No 83
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=77.30 E-value=0.28 Score=33.54 Aligned_cols=90 Identities=18% Similarity=0.325 Sum_probs=47.0
Q ss_pred CCcccccccccccCcE----EccCCCcccHHHHHHHHHhCCCCCCCCCcccccccccccCCCcccccCCCcchhhHHHhH
Q 029826 6 CGDVCSVCHGNFNVPC----QANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKV 81 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv----~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~~~~~~~~~~~~~~~~~~v~~~i 81 (187)
+...|..|...|..-. --+||..||..|....... ...|-.|-..... +.. + +.-.....+++
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-----vRVC~~C~~~~~~--~~~-----~-~~l~~lkvkdL 84 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-----PRLCLLCQRFRAT--AFQ-----R-EELMKMKVKDL 84 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC---------CCEEHHHHHHHHT--TTC-----H-HHHHTSCHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-----ceECHHHHHHHhc--ccc-----H-HHHhcccHHHH
Confidence 3457999998775321 1369999999997543322 1267777443210 000 0 00011122345
Q ss_pred HHhhhhhCCCCCCCccchhhcchhHHHHHHHHh
Q 029826 82 ESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRE 114 (187)
Q Consensus 82 ~~y~~~~s~~~~~~~~~~~l~~~p~ll~~l~~~ 114 (187)
..|.....-.. +...+..+++..++..
T Consensus 85 ~~yL~~~~I~~------~~c~EKedLv~lvl~~ 111 (120)
T 1y02_A 85 RDYLSLHDIST------EMCREKEELVLLVLGQ 111 (120)
T ss_dssp HHHHHHTTCCC------TTCCSHHHHHHHHHHT
T ss_pred HHHHHhCCCCc------ccceeHHHHHHHHHhc
Confidence 56655544443 5677777777766654
No 84
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=76.81 E-value=1 Score=28.91 Aligned_cols=34 Identities=24% Similarity=0.600 Sum_probs=24.7
Q ss_pred CCCCCcccccccccccCcEE----ccCCCcccHHHHHH
Q 029826 3 GPPCGDVCSVCHGNFNVPCQ----ANCSHWFCGNCIML 36 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~----~~C~H~fC~~Ci~~ 36 (187)
++.+...|.+|...|..-.. -.||+.||..|...
T Consensus 5 ~~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 5 SSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 45667789999997753211 36999999999743
No 85
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=76.19 E-value=0.56 Score=24.56 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=9.7
Q ss_pred CCCcccccccccccCc
Q 029826 5 PCGDVCSVCHGNFNVP 20 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~p 20 (187)
.+.+.||+|...+..+
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 3456677776666554
No 86
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.00 E-value=0.36 Score=28.89 Aligned_cols=53 Identities=19% Similarity=0.639 Sum_probs=32.6
Q ss_pred CCCCCccccccccccc-CcEEc---cCCCcccHHHHHHHHHhCCCCCCCCCcccccc
Q 029826 3 GPPCGDVCSVCHGNFN-VPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~-~pv~~---~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~ 55 (187)
..++...|++|..... .-.++ .|..+|-..|+.-.-..........||.|+..
T Consensus 2 s~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 2 SSGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CCSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3567788999998653 22333 37788888887432111111245699999753
No 87
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=74.79 E-value=1.5 Score=38.53 Aligned_cols=53 Identities=26% Similarity=0.595 Sum_probs=39.4
Q ss_pred CCCCcccccccccccCcEE----------ccCCCcc--------------------cHHHHHHHHHhCCC---CCCCCCc
Q 029826 4 PPCGDVCSVCHGNFNVPCQ----------ANCSHWF--------------------CGNCIMLVWDHGST---LQACRCP 50 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~----------~~C~H~f--------------------C~~Ci~~~~~~~~~---~~~~~Cp 50 (187)
|++--.|+-|+..+.+|.. |+||..| |..|..+|-....+ -++..||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 5677789999998877632 4566654 99999999865442 3577999
Q ss_pred cccccc
Q 029826 51 LCRRRI 56 (187)
Q Consensus 51 ~Cr~~~ 56 (187)
.|--.+
T Consensus 94 ~CGP~l 99 (657)
T 3ttc_A 94 ECGPYL 99 (657)
T ss_dssp TTSCCE
T ss_pred ccCccc
Confidence 997766
No 88
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=73.93 E-value=2.6 Score=37.81 Aligned_cols=55 Identities=27% Similarity=0.572 Sum_probs=40.6
Q ss_pred CCCCcccccccccccCcEE----------ccCCCcc--------------------cHHHHHHHHHhCCC---CCCCCCc
Q 029826 4 PPCGDVCSVCHGNFNVPCQ----------ANCSHWF--------------------CGNCIMLVWDHGST---LQACRCP 50 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~----------~~C~H~f--------------------C~~Ci~~~~~~~~~---~~~~~Cp 50 (187)
|++--.|+-|+..+.+|.. |+||..| |..|-.+|-....+ -++..||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 5677789999998877632 3566654 99999999765442 3577999
Q ss_pred cccccccc
Q 029826 51 LCRRRITL 58 (187)
Q Consensus 51 ~Cr~~~~~ 58 (187)
.|--.+..
T Consensus 183 ~CGP~l~l 190 (772)
T 4g9i_A 183 VCGPSYRL 190 (772)
T ss_dssp TTSCCEEE
T ss_pred cCCceEEE
Confidence 99877654
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=73.51 E-value=2 Score=30.16 Aligned_cols=49 Identities=22% Similarity=0.547 Sum_probs=31.5
Q ss_pred CCcccccccccccCcEEccCCCcccHHHHHHHHHh----C--CCCCCCCCccccc
Q 029826 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDH----G--STLQACRCPLCRR 54 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~----~--~~~~~~~Cp~Cr~ 54 (187)
.+..|.+|.+--.--.--.|...||..|+.+-+.. . ...+...||.|+.
T Consensus 62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45678888873221111269999999999865521 0 1245679999963
No 90
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=72.81 E-value=1.6 Score=26.78 Aligned_cols=29 Identities=24% Similarity=0.674 Sum_probs=21.0
Q ss_pred CcccccccccccCcEE----ccCCCcccHHHHH
Q 029826 7 GDVCSVCHGNFNVPCQ----ANCSHWFCGNCIM 35 (187)
Q Consensus 7 ~~~C~iC~~~~~~pv~----~~C~H~fC~~Ci~ 35 (187)
+..|.+|...|..-.. -.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 4589999987753221 3699999999963
No 91
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=72.25 E-value=0.11 Score=33.90 Aligned_cols=45 Identities=20% Similarity=0.465 Sum_probs=29.6
Q ss_pred cccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccccccCC
Q 029826 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPN 62 (187)
Q Consensus 8 ~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~~~~~ 62 (187)
..||+|+..+.- .=++.+|..|-..+... . .||.|.+++..+...
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~~-a-----~CPdC~q~LevLkAC 77 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEMK-A-----LCPDCHQPLQVLKAC 77 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEEE-E-----ECTTTCSBCEEEEET
T ss_pred ccCccCCCccee----cCCEEECccccchhhcc-c-----cCcchhhHHHHHHHh
Confidence 789999986542 11344588886543332 2 899999998755443
No 92
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=70.82 E-value=1.9 Score=38.64 Aligned_cols=54 Identities=26% Similarity=0.527 Sum_probs=39.0
Q ss_pred CCCCcccccccccccCcEE----------ccCCCcc--------------------cHHHHHHHHHhCCC---CCCCCCc
Q 029826 4 PPCGDVCSVCHGNFNVPCQ----------ANCSHWF--------------------CGNCIMLVWDHGST---LQACRCP 50 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~----------~~C~H~f--------------------C~~Ci~~~~~~~~~---~~~~~Cp 50 (187)
|++--.|+-|+..+.+|.. |+||..| |..|..+|-....+ -++..||
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~ 187 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACF 187 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCT
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCC
Confidence 4667789999998877632 4566543 99999998765432 2467999
Q ss_pred ccccccc
Q 029826 51 LCRRRIT 57 (187)
Q Consensus 51 ~Cr~~~~ 57 (187)
.|--.+.
T Consensus 188 ~CGP~l~ 194 (761)
T 3vth_A 188 DCGPSLS 194 (761)
T ss_dssp TTSCCEE
T ss_pred ccCCeeE
Confidence 9977664
No 93
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=70.67 E-value=2.5 Score=28.44 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=32.2
Q ss_pred cccccccccccC---cEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 8 DVCSVCHGNFNV---PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 8 ~~C~iC~~~~~~---pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
+.|..|...+.+ .....=|..||..|..+.+..+. .|..|.+++.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~-----~C~~C~~~I~ 80 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG-----AGGSGGHMGS 80 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCC-----SSSCSSCCSC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCC-----ccccCCCCcC
Confidence 567788877752 23444667899999988665433 7999999886
No 94
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=70.18 E-value=2.1 Score=26.90 Aligned_cols=31 Identities=29% Similarity=0.771 Sum_probs=22.1
Q ss_pred CCcccccccccccCcEE----ccCCCcccHHHHHH
Q 029826 6 CGDVCSVCHGNFNVPCQ----ANCSHWFCGNCIML 36 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv~----~~C~H~fC~~Ci~~ 36 (187)
+...|.+|...|..-.. -.||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34579999997763221 36999999999743
No 95
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=69.52 E-value=2.2 Score=26.94 Aligned_cols=31 Identities=26% Similarity=0.637 Sum_probs=22.2
Q ss_pred CCcccccccccccCcE---E-ccCCCcccHHHHHH
Q 029826 6 CGDVCSVCHGNFNVPC---Q-ANCSHWFCGNCIML 36 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv---~-~~C~H~fC~~Ci~~ 36 (187)
+...|.+|...|..-. . -.||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4568999999775321 1 36999999999643
No 96
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=68.72 E-value=6.1 Score=24.74 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=26.6
Q ss_pred CCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
+.+...|++|...|... .-+.+..+.-....+..|+.|.+.+.
T Consensus 25 ~~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 25 SAECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp CCTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred CCCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeC
Confidence 34456777777766542 34445544433345679999988773
No 97
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.04 E-value=1.7 Score=29.76 Aligned_cols=29 Identities=28% Similarity=0.780 Sum_probs=21.2
Q ss_pred CcccccccccccCcE---E-ccCCCcccHHHHH
Q 029826 7 GDVCSVCHGNFNVPC---Q-ANCSHWFCGNCIM 35 (187)
Q Consensus 7 ~~~C~iC~~~~~~pv---~-~~C~H~fC~~Ci~ 35 (187)
...|.+|...|..-. . -.||+.||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 357999999775321 1 2699999999964
No 98
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=67.52 E-value=1.1 Score=21.61 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=9.2
Q ss_pred CCCCCccccccccccc
Q 029826 3 GPPCGDVCSVCHGNFN 18 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~ 18 (187)
.|+-..+||+|+..+.
T Consensus 2 spef~vqcpvcqq~mp 17 (29)
T 3vhs_A 2 SPEFQVQCPVCQQMMP 17 (29)
T ss_dssp ---CEEECTTTCCEEE
T ss_pred CCceeeeChHHHHhCc
Confidence 3555677888887553
No 99
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=67.27 E-value=2.6 Score=24.83 Aligned_cols=48 Identities=19% Similarity=0.437 Sum_probs=32.0
Q ss_pred CCCCcccccccccccCcEEc--cCCCcccHHHHHHHHHhCCCCCCCCCccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQA--NCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~--~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~ 54 (187)
..++..|.+|.+. ..... .|...|...|+..-.... ..+...||.|+.
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~-p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKA-PEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSC-CCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCC-CCCceECccccc
Confidence 3556789999873 22221 488889999997643332 346779999965
No 100
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=64.99 E-value=4.1 Score=27.30 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=31.5
Q ss_pred CcccccccccccC-cEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 7 GDVCSVCHGNFNV-PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 7 ~~~C~iC~~~~~~-pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
-+.|..|...+.. +....=|..||..|..+.+ .. .|..|.+++.
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~-----~C~~C~~~I~ 74 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AV-----VCQGCHNAID 74 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CC-----BCTTTCSBCC
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--Cc-----cCcccCCcCC
Confidence 3678888887764 3334567889999987633 22 8999999885
No 101
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.77 E-value=1.8 Score=32.42 Aligned_cols=29 Identities=38% Similarity=0.959 Sum_probs=20.2
Q ss_pred CCcccccccccccCc---EE-ccCCCcccHHHH
Q 029826 6 CGDVCSVCHGNFNVP---CQ-ANCSHWFCGNCI 34 (187)
Q Consensus 6 ~~~~C~iC~~~~~~p---v~-~~C~H~fC~~Ci 34 (187)
++..|..|...|..- .. -.||+.||..|.
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs 192 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCT 192 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTS
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHh
Confidence 356899999877522 11 258999998875
No 102
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.63 E-value=2.6 Score=26.54 Aligned_cols=30 Identities=30% Similarity=0.706 Sum_probs=21.2
Q ss_pred CCcccccccccccCcEE----ccCCCcccHHHHH
Q 029826 6 CGDVCSVCHGNFNVPCQ----ANCSHWFCGNCIM 35 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv~----~~C~H~fC~~Ci~ 35 (187)
+...|..|...|..-.. -.||..||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 34579999997753211 3699999999953
No 103
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=63.00 E-value=2.5 Score=27.10 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=21.2
Q ss_pred CcccccccccccCcE----EccCCCcccHHHHHH
Q 029826 7 GDVCSVCHGNFNVPC----QANCSHWFCGNCIML 36 (187)
Q Consensus 7 ~~~C~iC~~~~~~pv----~~~C~H~fC~~Ci~~ 36 (187)
...|.+|...|..-. -..||+.||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 356999998765221 136999999999643
No 104
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=62.61 E-value=5.6 Score=23.43 Aligned_cols=40 Identities=35% Similarity=0.838 Sum_probs=26.8
Q ss_pred cccccccccccCcEE---ccCCCcccHHHHHHHHHhCCCCCCCCCccc
Q 029826 8 DVCSVCHGNFNVPCQ---ANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (187)
Q Consensus 8 ~~C~iC~~~~~~pv~---~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~C 52 (187)
..|--|+..+.+... ..|++.||.+|=. +.+.. +. .||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~--fiHe~-Lh--~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV--FVHDS-LH--SCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH--TTTTT-SC--SSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH--HHHhh-cc--CCcCC
Confidence 358888888765432 3599999999953 33332 22 89887
No 105
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.66 E-value=16 Score=18.83 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=18.9
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~C 52 (187)
+..+.|++|...|... .-+.+.+..-....+..|+.|
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~~~~~C~~C 46 (46)
T 2eq4_A 10 EKLYNCKECGKSFSRA-----------PCLLKHERLHSGEKPSGPSSG 46 (46)
T ss_dssp CCCCCBTTTTBCCSCH-----------HHHHHHHHHCCSSSCCCCCCC
T ss_pred CCCeECCCCCCccCch-----------HHHHHHHHhcCCCCCCCCCCC
Confidence 3446777777665542 233333333332345577766
No 106
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=60.28 E-value=10 Score=22.11 Aligned_cols=42 Identities=14% Similarity=0.316 Sum_probs=25.1
Q ss_pred CCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
.+....|++|...+... .-+....+.........|+.|...+
T Consensus 14 ~~~~~~C~~C~k~f~~~-----------~~l~~H~~~H~~~~~~~C~~C~k~f 55 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYK-----------GNLASHKTVHTGEKPYRCNICGAQF 55 (74)
T ss_dssp CCCSBCCTTSSCCBSCH-----------HHHHHHHHHHCCCCSEECTTTCCEE
T ss_pred CCCCeECCCCCceeCCH-----------HHHHHHHHHcCCCCCEECCCCCchh
Confidence 35567888888877653 2233333332223456999998766
No 107
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.07 E-value=2.9 Score=31.53 Aligned_cols=30 Identities=30% Similarity=0.744 Sum_probs=21.4
Q ss_pred CCcccccccccccCcE----EccCCCcccHHHHH
Q 029826 6 CGDVCSVCHGNFNVPC----QANCSHWFCGNCIM 35 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv----~~~C~H~fC~~Ci~ 35 (187)
++..|..|...|..-. -..||+.||..|-.
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 4468999998765321 13699999999864
No 108
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=58.91 E-value=3.5 Score=26.02 Aligned_cols=28 Identities=25% Similarity=0.610 Sum_probs=18.5
Q ss_pred ccccccccc-----CcEEcc-CCCcccHHHHHHH
Q 029826 10 CSVCHGNFN-----VPCQAN-CSHWFCGNCIMLV 37 (187)
Q Consensus 10 C~iC~~~~~-----~pv~~~-C~H~fC~~Ci~~~ 37 (187)
||-|...+. .++.-+ |++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 887766432 234554 8888888887664
No 109
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=58.86 E-value=8.3 Score=23.44 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=31.2
Q ss_pred CCCCCcccccccccccCcEEcc-----CC-CcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQAN-----CS-HWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~~-----C~-H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
.+.+...| +|...... -++. |. .+|-..|+. +... ..+...||.|+..-
T Consensus 12 d~~~~~~C-~C~~~~~g-~MI~CD~~~C~~~wfH~~Cvg--l~~~-p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTK-PRGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCS-TTCCCSCS-SEECCSCSSCSCCCEETTTTT--CSSC-CSSCCCCTTTSSCS
T ss_pred CCCCCCEE-ECCCCCCC-CEeEeeCCCCCCccEecccCC--cCcC-CCCCEECCCCCccc
Confidence 34566777 89885433 3443 55 588889986 2222 24678999997643
No 110
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.27 E-value=17 Score=18.62 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=8.9
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2eop_A 10 EKPHECRECGKSFSF 24 (46)
T ss_dssp CCSCBCTTTCCBCSS
T ss_pred CCCeeCCCCCchhCC
Confidence 344667777665554
No 111
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=58.11 E-value=1.7 Score=32.28 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=31.4
Q ss_pred CCCcccccccccccCcEE-ccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~-~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
+.+..|.+|.+--. -+. -.|...|...|+..-.... ..+.+.||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~-ll~Cd~C~~~~H~~Cl~p~l~~~-p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGD-LLCCEKCPKVFHLTCHVPTLLSF-PSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEE-EEECSSSSCEECTTTSSSCCSSC-CSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCc-eEEcCCCCCccCCccCCCCCCCC-CCCCEEeCceeCcc
Confidence 45567999986321 111 1488888888875533332 24667999998654
No 112
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.10 E-value=17 Score=18.75 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=9.0
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2epz_A 10 EKPFDCIDCGKAFSD 24 (46)
T ss_dssp CCSBCCTTTCCCBSS
T ss_pred CCCeECCCCCceeCC
Confidence 344667777666554
No 113
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=57.89 E-value=2.1 Score=31.14 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=31.2
Q ss_pred CCCcccccccccccCcEE-ccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~-~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
+.+..|.+|.+--. -+. -.|...|...|+..-.... ..+...||.|+...
T Consensus 2 ~~~~~C~~C~~~g~-ll~Cd~C~~~~H~~C~~p~l~~~-p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNGGE-LLCCEKCPKVFHLSCHVPTLTNF-PSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCCSS-CEECSSSSCEECTTTSSSCCSSC-CSSCCCCTTTSCSS
T ss_pred CCCCccccCCCCCe-eeecCCCCcccCccccCCCCCCC-CCCCEECccccCcc
Confidence 35567999986422 111 1488788888875533332 24567999998654
No 114
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=57.86 E-value=17 Score=19.73 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=24.6
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHH-hCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWD-HGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~-~~~~~~~~~Cp~Cr~~~~ 57 (187)
+..+.|++|...+... .-+.+.++ ......+..|+.|...++
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 3446777777766542 33444443 222234679999987663
No 115
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=57.49 E-value=6.6 Score=25.97 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=16.7
Q ss_pred CcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccc
Q 029826 19 VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (187)
Q Consensus 19 ~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~ 55 (187)
.+.-.+||+.|+ .....+..||.|+..
T Consensus 67 p~~C~~CG~~F~----------~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 67 PAQCRKCGFVFK----------AEINIPSRCPKCKSE 93 (105)
T ss_dssp CCBBTTTCCBCC----------CCSSCCSSCSSSCCC
T ss_pred CcChhhCcCeec----------ccCCCCCCCcCCCCC
Confidence 344457999982 111234599999764
No 116
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=57.41 E-value=2 Score=25.33 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=29.3
Q ss_pred CCCcccccccccccCcEE-ccCCCcccHHHHHHHHHhCCCCCCCCCcccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~-~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~ 55 (187)
.++..|.+|.+-- +-+. -.|...|...|+..-+... ..+...||.|+..
T Consensus 7 ~~~~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ppl~~~-p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGG-ELLCCDTCPSSYHIHCLNPPLPEI-PNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCS-SCBCCSSSCCCBCSSSSSSCCSSC-CSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCC-CEEEcCCCCHHHcccccCCCcCcC-CCCccCChhhcCc
Confidence 4567799998621 1111 1477777777876433332 2456799999654
No 117
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=57.23 E-value=3 Score=30.49 Aligned_cols=50 Identities=22% Similarity=0.557 Sum_probs=30.1
Q ss_pred CcccccccccccCcE----Ec---cCCCcccHHHHHHH------HHhCCCCCCCCCccccccc
Q 029826 7 GDVCSVCHGNFNVPC----QA---NCSHWFCGNCIMLV------WDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 7 ~~~C~iC~~~~~~pv----~~---~C~H~fC~~Ci~~~------~~~~~~~~~~~Cp~Cr~~~ 56 (187)
...||+|.....+.- ++ .|..+|-..|..-. ...........||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 457999998765432 44 37888888887321 1100001135999998754
No 118
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=57.07 E-value=7.5 Score=24.06 Aligned_cols=32 Identities=31% Similarity=0.616 Sum_probs=26.0
Q ss_pred CCCCCCCccccc--ccccccCcEEcc-CCCcccHH
Q 029826 1 MEGPPCGDVCSV--CHGNFNVPCQAN-CSHWFCGN 32 (187)
Q Consensus 1 ~~~~~~~~~C~i--C~~~~~~pv~~~-C~H~fC~~ 32 (187)
|+.++-...|.. |...-.-|..-. |+..||.+
T Consensus 8 m~~~~~g~~Cs~~~C~~~dflpf~C~~C~~~FC~~ 42 (75)
T 1wys_A 8 MAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLE 42 (75)
T ss_dssp CCCCCCCCCCSCTTTCCCSCCCEECTTTCCEECST
T ss_pred ccccccCCCcCcccCCCccceeeECcccCcCcCcc
Confidence 677777889988 998766688777 99999984
No 119
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=57.06 E-value=4.8 Score=26.33 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=12.2
Q ss_pred cccHHHHHHHHHhC
Q 029826 28 WFCGNCIMLVWDHG 41 (187)
Q Consensus 28 ~fC~~Ci~~~~~~~ 41 (187)
.||+.|+..|....
T Consensus 42 GFCRNCLskWy~~a 55 (105)
T 2o35_A 42 GFCRNCLSNWYREA 55 (105)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999764
No 120
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.96 E-value=19 Score=18.55 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=9.0
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2ytn_A 10 KKPYKCNECGKVFTQ 24 (46)
T ss_dssp CSSCBCTTTCCBCSS
T ss_pred CcCeECCCCCCeeCC
Confidence 344667777666554
No 121
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=56.90 E-value=4.8 Score=26.26 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=12.1
Q ss_pred cccHHHHHHHHHhC
Q 029826 28 WFCGNCIMLVWDHG 41 (187)
Q Consensus 28 ~fC~~Ci~~~~~~~ 41 (187)
.||..|+..|....
T Consensus 41 GFCRNCLskWy~~a 54 (104)
T 3fyb_A 41 DFCRNCLAKWLMEA 54 (104)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999764
No 122
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=56.68 E-value=4.4 Score=22.70 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=27.7
Q ss_pred ccccccccccCcEEc---cCCCcccHHHHHHHHHhCCCCCCCCCccccc
Q 029826 9 VCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (187)
Q Consensus 9 ~C~iC~~~~~~pv~~---~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~ 54 (187)
.|.+|...-....++ .|...|-..|+..-+... ..+...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~-P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEV-PDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSC-CSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCC-CCCcEECcCccc
Confidence 477887543221222 488888889986533332 245679999965
No 123
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=56.64 E-value=12 Score=26.52 Aligned_cols=45 Identities=20% Similarity=0.472 Sum_probs=30.6
Q ss_pred CCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
+=+.|..|...+.......=|..||..|..+.+. . .|..|.+++.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~--~-----~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG--T-----KCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS--C-----BCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc--c-----cccccccccC
Confidence 3467788887665433344577899999877543 2 7888887764
No 124
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.34 E-value=16 Score=18.79 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=9.6
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~~~~~C~~C~k~F~~ 24 (46)
T 2eoe_A 10 EKPYKCNECGKVFTQ 24 (46)
T ss_dssp CCSSEETTTTEECSS
T ss_pred CCCeECCCcChhhCC
Confidence 445677777776654
No 125
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.15 E-value=18 Score=18.51 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=8.5
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ytr_A 11 KPYKCNECGKAFSQ 24 (46)
T ss_dssp CTTCCTTTCCCCSS
T ss_pred cCcCCCCCCCccCC
Confidence 44667777666554
No 126
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=56.05 E-value=64 Score=24.49 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 029826 162 LLIALLCFLHVAALYRAVLYNRHGG 186 (187)
Q Consensus 162 ~~v~~~~~~~~~~~~~~~~~~r~~~ 186 (187)
++-..+--..++..|-+|-.+|||.
T Consensus 167 vl~~~~~~~~lg~ey~d~~~~r~~~ 191 (249)
T 3tx3_A 167 VLWYIFVCWMMSIQYLDYPFDNHKL 191 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444444456788888888888864
No 127
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.93 E-value=16 Score=18.80 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=9.4
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2eov_A 10 EKPYKCSDCGKSFTW 24 (46)
T ss_dssp CCSCBCSSSCCBCSS
T ss_pred CCCccCCccChhhCC
Confidence 344677777766654
No 128
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.88 E-value=20 Score=18.49 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=8.9
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ytq_A 10 EKPYGCSECGKAFSS 24 (46)
T ss_dssp CCSCBCSSSCCBCSC
T ss_pred CCCcCCCccChhhCC
Confidence 344667777665554
No 129
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.71 E-value=20 Score=18.44 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=8.6
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2eoq_A 11 KPFKCDICGKSFCG 24 (46)
T ss_dssp CSCCCSSSCCCCSS
T ss_pred CCcCCCcCCchhCC
Confidence 34667777666554
No 130
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=55.38 E-value=8.2 Score=25.91 Aligned_cols=47 Identities=15% Similarity=0.352 Sum_probs=33.4
Q ss_pred CCccccccccccc---CcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 6 CGDVCSVCHGNFN---VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 6 ~~~~C~iC~~~~~---~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
+=+.|..|...+. .+....=|..||..|..+.+.... .|..|.+++.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~-----~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDG-----LCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCE-----ECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCcc-----ChhhcCCccC
Confidence 3477888888774 244455678899999987654322 7999988884
No 131
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.12 E-value=7.2 Score=25.08 Aligned_cols=47 Identities=23% Similarity=0.477 Sum_probs=29.7
Q ss_pred CCCcccccccccccCcEEcc-----CC-CcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQAN-----CS-HWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~-----C~-H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
.+...| +|...... -++. |. .+|...|+. +... ..+...||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVg--l~~~-p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTK-PRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTT--CSSC-CCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCC--cCcC-CCCCEECcCccCcC
Confidence 455667 99885433 3443 55 588888886 2222 24667999997643
No 132
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=54.67 E-value=7.2 Score=21.33 Aligned_cols=40 Identities=15% Similarity=0.354 Sum_probs=22.0
Q ss_pred CCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
....|++|...+... .-+...........+..|+.|...+
T Consensus 3 ~~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f 42 (57)
T 3uk3_C 3 SSRECSYCGKFFRSN-----------YYLNIHLRTHTGEKPYKCEFCEYAA 42 (57)
T ss_dssp --CBCTTTCCBCSCH-----------HHHHHHHHHHHCCCCEECSSSSCEE
T ss_pred CCccCCCCcchhCCh-----------HHHHHHHHHcCCCCCcCCCCCcchh
Confidence 356788888877653 2222222221122356899998766
No 133
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=54.63 E-value=7.1 Score=23.49 Aligned_cols=34 Identities=21% Similarity=0.503 Sum_probs=25.0
Q ss_pred CCCcccccccccccCcEEccC-CCcccHHHHHHHHH
Q 029826 5 PCGDVCSVCHGNFNVPCQANC-SHWFCGNCIMLVWD 39 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C-~H~fC~~Ci~~~~~ 39 (187)
++..-|.||.+... =.-..| |-.||..|+.+.-.
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHTT
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHHHcc
Confidence 55667999999844 234568 78999999988653
No 134
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=54.48 E-value=4 Score=29.63 Aligned_cols=46 Identities=17% Similarity=0.452 Sum_probs=30.9
Q ss_pred CcccccccccccC---cEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 7 GDVCSVCHGNFNV---PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 7 ~~~C~iC~~~~~~---pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
=+.|..|...+.. .....=|..||..|..+.+..+. .|..|.+++.
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~-----~C~~C~~~I~ 80 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG-----ACSACGQSIP 80 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCE-----ECTTTCCEEC
T ss_pred CcccCCCCcccccCCceEEEeCCccccccccccccccCC-----ccccCCCccc
Confidence 3667777776653 44445577899999877554321 5899988875
No 135
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=54.15 E-value=14 Score=19.03 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=19.5
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~C 52 (187)
+....|++|...|... .-+.+.++.........||.|
T Consensus 8 ~k~~~C~~C~k~f~~~-----------~~l~~H~~~H~~~~~~~C~~c 44 (45)
T 2epq_A 8 EKPYSCPVCGLRFKRK-----------DRMSYHVRSHDGSVGKSGPSS 44 (45)
T ss_dssp CCSSEETTTTEECSCH-----------HHHHHHHHHHSCCCCCCCCCC
T ss_pred CCCCcCCCCCcccCCH-----------HHHHHHHHHccCCCCCCCcCC
Confidence 3456777777665542 233333333222345688887
No 136
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=54.13 E-value=19 Score=18.84 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=21.2
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr 53 (187)
+..+.|.+|...|... .-+...++......+..|+.|.
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~k~~~C~~C~ 47 (48)
T 2epr_A 10 RKQVACEICGKIFRDV-----------YHLNRHKLSHSGEKPYSSGPSS 47 (48)
T ss_dssp CCSEEETTTTEEESSH-----------HHHHHHGGGSCSCCCCCSCCCC
T ss_pred CcCeeCCCCCcccCCH-----------HHHHHHHHhcCCCCCccCCCCC
Confidence 4456777777766542 2333444333333456888884
No 137
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=53.97 E-value=14 Score=21.26 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=24.9
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
+..+.|++|...+... .-+...+..........|+.|...+
T Consensus 7 ~~~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~~~~~C~~C~~~f 47 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSK-----------AALRIHERIHCTDRPFKCNYCSFDT 47 (70)
T ss_dssp CCSEECSSSSCEESSH-----------HHHHHHHGGGCCSCSEECSSSSCEE
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHcCCCCCEeCCCCCCcc
Confidence 4557888887766643 2333334333333457999998766
No 138
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=53.92 E-value=10 Score=22.07 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=24.1
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
+..+.|++|...+... .-+...++.........|+.|...+
T Consensus 12 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~h~~~~~~~C~~C~~~f 52 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRS-----------SILVQHQRVHTGEKPYKCLECGKAF 52 (72)
T ss_dssp CCCEECSSSCCEESSH-----------HHHHHHHHGGGCSCCEECSSSCCEE
T ss_pred CCCccCCCCCCccCCH-----------HHHHHHHHhcCCCCCeECCCCCccc
Confidence 4557788887766543 2233333332223457999998766
No 139
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.86 E-value=15 Score=18.91 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=8.4
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eml_A 11 KPYECSVCGKAFSH 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeeCCCcCCccCC
Confidence 44667777665554
No 140
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=53.49 E-value=1.2 Score=35.48 Aligned_cols=46 Identities=13% Similarity=0.267 Sum_probs=31.3
Q ss_pred CCCcccccccccccCcEEc----cCC--CcccHHHHHHHHHhCCCCCCCCCcccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQA----NCS--HWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~----~C~--H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~ 55 (187)
...-.||+|.....-.+.. .=| +-+|..|-.+|--.. .+||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R-----~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVR-----IKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCT-----TSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecC-----cCCcCCCCC
Confidence 4568999999976554433 123 567888887765443 399999775
No 141
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.48 E-value=1.4 Score=25.50 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=28.9
Q ss_pred CCCCcccccccccccCcEE-ccCCCcccHHHHHHHHHhCCCCCCCCCccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~-~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~ 54 (187)
..++..|.+|.+.- +=+. -.|...|...|+..-+.... .+...||.|..
T Consensus 6 ~~~~~~C~vC~~~g-~ll~Cd~C~~~~H~~Cl~ppl~~~p-~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLKTIP-KGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSS-CCEECSSSSCEECSSSSSSCCCSCC-CSSCCCHHHHC
T ss_pred CCCCCCCccCCCCC-eEEEcCCCCcceECccCCCCcCCCC-CCceEChhhhC
Confidence 45677899998742 1111 14777777777764333222 35668888854
No 142
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=53.37 E-value=19 Score=18.46 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=8.2
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2em0_A 11 KTWKCRECDMCFSQ 24 (46)
T ss_dssp CCCCCSSSCCCCSS
T ss_pred cCeECCCCCcccCC
Confidence 34567766665544
No 143
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.25 E-value=17 Score=18.77 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=8.3
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2em5_A 11 KSHQCHECGRGFTL 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeECCcCCCccCC
Confidence 34667776665544
No 144
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=53.20 E-value=7.2 Score=27.80 Aligned_cols=48 Identities=25% Similarity=0.688 Sum_probs=30.3
Q ss_pred Cccccccccccc--CcEEccCCCcccHHHHHHHHHhCC-----CCCCCCCccccc
Q 029826 7 GDVCSVCHGNFN--VPCQANCSHWFCGNCIMLVWDHGS-----TLQACRCPLCRR 54 (187)
Q Consensus 7 ~~~C~iC~~~~~--~pv~~~C~H~fC~~Ci~~~~~~~~-----~~~~~~Cp~Cr~ 54 (187)
+..|.+|.+--. .--..+|...||..||...+-... ......|-+|.-
T Consensus 79 ~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 467888886321 000125889999999987664421 234668999964
No 145
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.15 E-value=19 Score=18.52 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=8.7
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ep2_A 10 EKPYECSICGKSFTK 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CcCcCCCCCCcccCC
Confidence 344667776665554
No 146
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=52.74 E-value=16 Score=19.75 Aligned_cols=38 Identities=13% Similarity=0.376 Sum_probs=22.5
Q ss_pred cccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 8 ~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
..|++|...+... .-+...........+..|+.|...+
T Consensus 2 ~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f 39 (57)
T 1bbo_A 2 YICEECGIRXKKP-----------SMLKKHIRTHTDVRPYHCTYCNFSF 39 (57)
T ss_dssp CBCTTTCCBCSSH-----------HHHHHHHHHTSSCCCEECSSSSCEE
T ss_pred CcCCCCcCcCCCH-----------HHHHHHHHhcCCCCCccCCCCCchh
Confidence 4677777766553 2233333333333456899998766
No 147
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=52.60 E-value=17 Score=19.94 Aligned_cols=38 Identities=24% Similarity=0.508 Sum_probs=22.8
Q ss_pred cccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 8 ~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
+.|++|...+... .-+...++......+..|+.|...+
T Consensus 3 ~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f 40 (60)
T 2adr_A 3 FVCEVCTRAFARQ-----------EHLKRHYRSHTNEKPYPCGLCNRAF 40 (60)
T ss_dssp BCCTTTCCCBSCH-----------HHHHHHHHTTTSSCSEECTTTCCEE
T ss_pred CcCCCCccccCCH-----------HHHHHHHHHhCCCCCccCCCCCCcc
Confidence 5688877766543 2333434333333456899998776
No 148
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.25 E-value=17 Score=18.76 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=8.9
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ysp_A 10 EKPYKCEKCGKGYNS 24 (46)
T ss_dssp CCSEEETTTTEEESC
T ss_pred CCCeECCCCCCccCC
Confidence 344667777665554
No 149
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.11 E-value=18 Score=18.56 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=8.4
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ene_A 10 EKPYKCNECGKVFRH 24 (46)
T ss_dssp SSSEECSSSCCEESS
T ss_pred CCCeECCCCCchhCC
Confidence 344566666665543
No 150
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=52.05 E-value=23 Score=21.53 Aligned_cols=17 Identities=29% Similarity=0.603 Sum_probs=12.1
Q ss_pred CCCCCcccccccccccC
Q 029826 3 GPPCGDVCSVCHGNFNV 19 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~ 19 (187)
..+..+.|++|...+..
T Consensus 4 ~~~~~~~C~~C~~~f~~ 20 (96)
T 2dmd_A 4 GSSGPHKCEVCGKCFSR 20 (96)
T ss_dssp CCCCCCCBTTTTBCCCC
T ss_pred CCCcCeECCCCCCccCC
Confidence 34566889999887754
No 151
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.97 E-value=19 Score=18.41 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=8.6
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2en8_A 10 EKSHTCDECGKNFCY 24 (46)
T ss_dssp CSSEECTTTCCEESS
T ss_pred CCCeECCCcCcccCC
Confidence 344667776665544
No 152
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.84 E-value=23 Score=18.14 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=8.4
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (47)
T 2epx_A 11 KPYECIECGKAFIQ 24 (47)
T ss_dssp CSBCCSSSCCCBSS
T ss_pred CCEECCccCchhCC
Confidence 44667776665554
No 153
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=51.65 E-value=5 Score=32.87 Aligned_cols=50 Identities=20% Similarity=0.559 Sum_probs=31.7
Q ss_pred CCcccccccccccC--cEEccCCCcccHHHHHHHHHhCC-----CCCCCCCcccccc
Q 029826 6 CGDVCSVCHGNFNV--PCQANCSHWFCGNCIMLVWDHGS-----TLQACRCPLCRRR 55 (187)
Q Consensus 6 ~~~~C~iC~~~~~~--pv~~~C~H~fC~~Ci~~~~~~~~-----~~~~~~Cp~Cr~~ 55 (187)
.+..|.+|.+--.- .-..+|...||..||.+.+-.+. ......|-+|...
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 35678888873211 11126999999999988762221 1245699999754
No 154
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=51.62 E-value=3.8 Score=24.01 Aligned_cols=47 Identities=23% Similarity=0.516 Sum_probs=28.8
Q ss_pred CCCCCcccccccccccCcEEcc-----CC-CcccHHHHHHHHHhCCCCCCCCCccccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQAN-----CS-HWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~~-----C~-H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~ 54 (187)
.+.+...| +|.+.... -++. |. .+|-..|+. +... ..+...||.|++
T Consensus 5 d~~e~~yC-~C~~~~~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~-p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 5 GSNEPTYC-LCHQVSYG-EMIGCDNPDCPIEWFHFACVD--LTTK-PKGKWFCPRCVQ 57 (59)
T ss_dssp ---CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGT--CSSC-CSSCCCCHHHHC
T ss_pred CCCCCcEE-ECCCCCCC-CeeEeeCCCCCCCCEecccCC--cccC-CCCCEECcCccC
Confidence 34566677 99885433 3543 55 588889986 2222 246679999964
No 155
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.43 E-value=22 Score=18.24 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=9.0
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2enc_A 10 EKPFKCEECGKGFYT 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCcCCCCCCCcCCC
Confidence 344667777666554
No 156
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.39 E-value=19 Score=18.46 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=8.4
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eme_A 11 KPYVCDYCGKAFGL 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeECCCCChhhCC
Confidence 44667776665544
No 157
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=51.37 E-value=19 Score=18.50 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=7.8
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2el4_A 11 KPYGCSQCAKTFSL 24 (46)
T ss_dssp CSEECSSSSCEESS
T ss_pred CceECCCCCchhCC
Confidence 34566666655543
No 158
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=50.86 E-value=12 Score=23.80 Aligned_cols=28 Identities=18% Similarity=0.538 Sum_probs=21.7
Q ss_pred CCCcccccccccccC--cEEccCCCcccHH
Q 029826 5 PCGDVCSVCHGNFNV--PCQANCSHWFCGN 32 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~--pv~~~C~H~fC~~ 32 (187)
.....|..|...+.- +..-.||..||..
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred ccCccchhhCCeecccCCeEcCCCCEeccc
Confidence 345789999985543 7777899999984
No 159
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=50.80 E-value=4.2 Score=24.57 Aligned_cols=48 Identities=19% Similarity=0.419 Sum_probs=29.9
Q ss_pred CCCCcccccccccccCcEEcc---CCCcccHHHHHHHHHhCCCCCCCCCccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQAN---CSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~~---C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~ 54 (187)
..+...| +|........++. |..+|-..|+.-. .....+...||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~--~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIR--KSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCC--TTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcC--cccCCCcEECCCCCC
Confidence 4566777 9988655444543 7778888887431 111224668998864
No 160
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=50.71 E-value=4.5 Score=25.04 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=30.7
Q ss_pred CCCcccccccccccCcEEc-----cCCCcccHHHHHHHHHhC----CCCCCCCCcccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQA-----NCSHWFCGNCIMLVWDHG----STLQACRCPLCRRR 55 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~-----~C~H~fC~~Ci~~~~~~~----~~~~~~~Cp~Cr~~ 55 (187)
++...| +|.....+..++ .|..+|-..|+.-.-... .......||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 456777 899874444444 477889999984211110 11246799999763
No 161
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.61 E-value=21 Score=18.38 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=8.7
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2elz_A 10 EKPYKCEDCGKGYNR 24 (46)
T ss_dssp CSSCBCSSSCCBCSS
T ss_pred CCCeeCcccCchhCC
Confidence 344667766665544
No 162
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=50.41 E-value=20 Score=18.44 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=9.3
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2emk_A 10 EKPYECKECGKAFSQ 24 (46)
T ss_dssp SCSCBCSSSCCBCSC
T ss_pred CCceECCCCCchhCC
Confidence 344677777766654
No 163
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=49.62 E-value=1.1 Score=28.10 Aligned_cols=33 Identities=21% Similarity=0.579 Sum_probs=21.2
Q ss_pred Cccccc--cccccc-----CcEEc------cCCCcccHHHHHHHHH
Q 029826 7 GDVCSV--CHGNFN-----VPCQA------NCSHWFCGNCIMLVWD 39 (187)
Q Consensus 7 ~~~C~i--C~~~~~-----~pv~~------~C~H~fC~~Ci~~~~~ 39 (187)
-.-||- |...+. ..+.- .|+|.||..|-+.|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 445765 766442 22443 6899999999876543
No 164
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=49.49 E-value=21 Score=20.87 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=24.6
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
+..+.|++|...+... .-+...++.........|+.|...+
T Consensus 16 ~~~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f 56 (77)
T 2cot_A 16 RRRYKCDECGKSFSHS-----------SDLSKHRRTHTGEKPYKCDECGKAF 56 (77)
T ss_dssp SCSSBCSSSCCBCSCH-----------HHHHHHHTTTCCSCSEECSSSCCEE
T ss_pred CCCEECCCCCcccCCH-----------HHHHHHHHHcCCCcCeeCCCCCCcc
Confidence 4557888888776543 2333333333323456899998766
No 165
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.26 E-value=22 Score=18.26 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=7.8
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2eq0_A 11 KPYKCHECGKVFRR 24 (46)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCeECCCCCchhCC
Confidence 34566666655543
No 166
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.07 E-value=22 Score=18.29 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=7.7
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2emf_A 11 KHFECTECGKAFTR 24 (46)
T ss_dssp CCEECSSSCCEESC
T ss_pred CCeECCCCCchhCC
Confidence 34566666655543
No 167
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=48.86 E-value=22 Score=18.29 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=8.0
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2el6_A 11 NPYKCSQCEKSFSG 24 (46)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCeECCCCCcccCC
Confidence 34566666665544
No 168
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.74 E-value=22 Score=18.25 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=7.9
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2ep0_A 11 KPYKCDVCHKSFRY 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeeCcccCcccCC
Confidence 34566666665543
No 169
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.33 E-value=18 Score=18.63 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=8.2
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ytd_A 11 KPYKCSECGKAFHR 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCeECCCCCCeeCC
Confidence 34667766665544
No 170
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.21 E-value=17 Score=18.64 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=9.0
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2emm_A 10 ERPHKCNECGKSFIQ 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCeeCCCCChhhCC
Confidence 344667777666554
No 171
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=47.78 E-value=41 Score=19.77 Aligned_cols=29 Identities=21% Similarity=0.048 Sum_probs=16.5
Q ss_pred cchhhcchhHHHHHHHHhhcCCCCchhHH
Q 029826 97 LFQRIQDLPFLLRRLVRELVDPHRSLPLV 125 (187)
Q Consensus 97 ~~~~l~~~p~ll~~l~~~~~~~~~~~~~~ 125 (187)
+.+.+++...-..++++....++..+|..
T Consensus 4 ~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~ 32 (61)
T 3mp7_B 4 LQERIRHFWKESRRAFLVTKKPNWATYKR 32 (61)
T ss_dssp ----CTTHHHHHTHHHHHSCCCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 34455566666677777777777666633
No 172
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.45 E-value=21 Score=18.35 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=7.9
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2em7_A 11 KPYKCEECGKGFIC 24 (46)
T ss_dssp CSEECSSSCCEESC
T ss_pred cCccCCCccchhCC
Confidence 34566666665543
No 173
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=47.35 E-value=20 Score=18.32 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=7.9
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2em9_A 11 KPYNCKECGKSFRW 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCeECCccccccCC
Confidence 34566666655543
No 174
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.31 E-value=26 Score=17.90 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=8.3
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2epw_A 11 KPCKCTECGKAFCW 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeeCCCCCCccCC
Confidence 34667776665544
No 175
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=47.21 E-value=10 Score=21.91 Aligned_cols=42 Identities=12% Similarity=0.259 Sum_probs=25.6
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
|....|.+|...|... .-+....+.-....+..|+.|...+.
T Consensus 2 EKpy~C~~C~k~F~~~-----------~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDA-----------SGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp CCCEECTTTCCEESSH-----------HHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred CCCccCCCCCCEeCCH-----------HHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 4457888888877653 33333333322234679999988773
No 176
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.14 E-value=18 Score=18.60 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=8.3
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2emy_A 11 NPYECHECGKAFSR 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred cCcCCCCCCcccCc
Confidence 34667776665554
No 177
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=46.99 E-value=20 Score=21.76 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=11.5
Q ss_pred CCCcccccccccccCc
Q 029826 5 PCGDVCSVCHGNFNVP 20 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~p 20 (187)
+..+.|++|...+...
T Consensus 5 ~~~~~C~~C~~~f~~~ 20 (95)
T 2yt9_A 5 SSGVACEICGKIFRDV 20 (95)
T ss_dssp CSCEECSSSCCEESSS
T ss_pred CCCeECCCCCCccCCh
Confidence 4567899988877543
No 178
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=46.97 E-value=4.5 Score=28.95 Aligned_cols=52 Identities=17% Similarity=0.584 Sum_probs=31.0
Q ss_pred CCCCccccccccccc-CcEEc---cCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 4 PPCGDVCSVCHGNFN-VPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~-~pv~~---~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
.++...| +|..... ....+ .|..+|...|+.-.-......+...||.|+..-
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3566778 9988543 22233 488899999984221111123457999998754
No 179
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=46.96 E-value=5.6 Score=23.54 Aligned_cols=47 Identities=23% Similarity=0.554 Sum_probs=28.9
Q ss_pred CCCCCcccccccccccCcEEcc-----CC-CcccHHHHHHHHHhCCCCCCCCCccccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQAN-----CS-HWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~~-----C~-H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~ 54 (187)
.+.+...| +|..... .-++. |. .+|-..|+. +.. ...+...||.|+.
T Consensus 7 d~~e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~-~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTY-KPKGKWYCPKCRG 59 (62)
T ss_dssp ---CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSS-CCSSCCCCHHHHT
T ss_pred CCCCCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCc-CCCCCEECcCccc
Confidence 34556667 9988543 34553 44 688889986 222 2246679999965
No 180
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.84 E-value=20 Score=18.40 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=8.9
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2en1_A 10 EKPFKCEECGKRFTQ 24 (46)
T ss_dssp CCSEEETTTTEEESS
T ss_pred CCCeeCCCCCcccCC
Confidence 344667777665554
No 181
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=46.66 E-value=10 Score=27.17 Aligned_cols=43 Identities=23% Similarity=0.581 Sum_probs=24.9
Q ss_pred cccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 8 ~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
+.|..|...+.......=|..||..|..+.+ .. .|..|.+++.
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~-----kC~~C~~~I~ 130 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GT-----KCAACQLGIP 130 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHTT--SC-----CCTTTCCCCC
T ss_pred CccCCCCCccCCCceeECCEeeecCcccccc--cc-----ccccCCCccC
Confidence 4555565554432222345567888876532 22 8888988774
No 182
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=46.46 E-value=19 Score=18.54 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=9.2
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ely_A 10 EKPFKCVECGKGFSR 24 (46)
T ss_dssp CCSBCCSSSCCCBSS
T ss_pred CCCcccCccCcccCC
Confidence 344667777766554
No 183
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.63 E-value=29 Score=17.68 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=8.2
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ytj_A 11 KPYICAECGKAFTI 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCeECCCCChhhCC
Confidence 34667766665544
No 184
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=45.47 E-value=4.4 Score=29.66 Aligned_cols=49 Identities=18% Similarity=0.421 Sum_probs=29.5
Q ss_pred CcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 7 ~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
+..|.+|.+--.-=.--.|...|...|+..-.... ..+...||.|+..-
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~-p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDV-PGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSC-CCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccC-CCCCCCCcCccCCC
Confidence 45789998642211112477778788875433332 24667999998653
No 185
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.30 E-value=20 Score=18.42 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=8.3
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2ytk_A 11 KPYKCNECGKVFTQ 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCEeCCcCCCccCC
Confidence 44567776665554
No 186
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=45.19 E-value=2.4 Score=25.40 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=29.9
Q ss_pred CCCCcccccccccccCcEEc-cCCCcccHHHHHHHHHhCCCCCCCCCccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~-~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~ 54 (187)
...+..|.+|.+-- +=+.- .|...|-..|+..-+... ..+...||.|..
T Consensus 5 ~~~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~ppl~~~-P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDGG-ELICCDGCPRAFHLACLSPPLREI-PSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCCS-SCEECSSCCCEECTTTSSSCCSSC-CSSCCCCHHHHH
T ss_pred CCCCCCCccCCCCC-CEEEcCCCChhhcccccCCCcCcC-CCCCeECccccC
Confidence 45677899998732 11111 477777777776433322 245678999965
No 187
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=45.15 E-value=20 Score=18.42 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=7.6
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ema_A 11 KRYKCNECGKVFSR 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred cCcCCCCCcchhCC
Confidence 34566666655443
No 188
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=45.12 E-value=4.5 Score=20.74 Aligned_cols=23 Identities=9% Similarity=0.329 Sum_probs=16.6
Q ss_pred HHHHHhhhcccccCcchhhhHHHH
Q 029826 135 IFSAVYIFSPIDIIPEALLGIVGL 158 (187)
Q Consensus 135 ~~~~~Y~~~P~D~iPd~~~~~~G~ 158 (187)
..|+=|++.|+++++-. +..-||
T Consensus 5 ~LALKYLLTPv~~l~a~-~Ssr~F 27 (36)
T 3bua_E 5 GLALKYLLTPVNFFQAG-YSSRRF 27 (36)
T ss_pred HHHHHHHhhhHHHHhcc-cchhhH
Confidence 35778999999988875 554444
No 189
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=44.96 E-value=4.4 Score=25.93 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=27.6
Q ss_pred cccccccccccCc-EEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 8 DVCSVCHGNFNVP-CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 8 ~~C~iC~~~~~~p-v~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
+.|..|...+... ....=|..||..|..+.+ . .+|..|.+++.
T Consensus 34 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~--~-----~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANETFVAKDNKILCNKCTTRED--S-----PKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSSCCEEETTEEECHHHHTTCC--C-----CBCSSSCCBCC
T ss_pred CcccccCCCCCcCeeECcCCEEEChhHhhhhc--C-----CccccCCCccc
Confidence 5677777766543 233356778888874321 1 28999988874
No 190
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=44.78 E-value=6.2 Score=25.59 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=28.5
Q ss_pred CCcccccccccccCcEEc---cCCCcccHHHHHHHHHhCCCCCCCCCccccc
Q 029826 6 CGDVCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv~~---~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~ 54 (187)
+...| ||...-.+..++ .|..+|-..|+..-.. ...+...||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~--~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQ--HIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTT--SCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCcc--CCCCCEECCCCcC
Confidence 44567 887755444444 3778888888753221 1124579999963
No 191
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.43 E-value=20 Score=18.52 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=9.4
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ytm_A 10 EKPYKCMECGKAFGD 24 (46)
T ss_dssp CCSSSBTTTTBCCSS
T ss_pred CCCcCCCCCCchhCC
Confidence 344677777766654
No 192
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=44.10 E-value=34 Score=21.17 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=10.8
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...+..
T Consensus 15 ~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 15 KKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCBCSSSCCBCSS
T ss_pred CcCeECCCCCCccCC
Confidence 445788888887754
No 193
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=44.03 E-value=6.3 Score=23.08 Aligned_cols=46 Identities=26% Similarity=0.565 Sum_probs=28.0
Q ss_pred CCCCcccccccccccCcEEcc-----CC-CcccHHHHHHHHHhCCCCCCCCCccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQAN-----CS-HWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~~-----C~-H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~ 54 (187)
+.+...| +|...-. .-++. |. .+|-..|+. +... ..+...||.|+.
T Consensus 7 ~~e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~-p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTK-PRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSC-CSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcC-CCCCEECcCccC
Confidence 4455666 8988543 34543 54 578888886 2322 246679999964
No 194
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.85 E-value=7.1 Score=26.97 Aligned_cols=50 Identities=14% Similarity=0.420 Sum_probs=30.9
Q ss_pred CCCccccccccccc---C-cEE-ccCCCcccHHHHHHHHHhCCCCCCCCCcccccc
Q 029826 5 PCGDVCSVCHGNFN---V-PCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (187)
Q Consensus 5 ~~~~~C~iC~~~~~---~-pv~-~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~ 55 (187)
.++..|.+|...+. + ... ..|.|.+|..|-...-. +.......|-.|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~-~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN-NRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC-SSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCC-CCCccceechhhHHH
Confidence 45678999999773 1 222 35999999998643211 111234588888664
No 195
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.75 E-value=2.1 Score=25.32 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=19.9
Q ss_pred CcccccccccccCc-----EEc-c--CCCcccHHHHHHHHHh
Q 029826 7 GDVCSVCHGNFNVP-----CQA-N--CSHWFCGNCIMLVWDH 40 (187)
Q Consensus 7 ~~~C~iC~~~~~~p-----v~~-~--C~H~fC~~Ci~~~~~~ 40 (187)
.-.||-|...+... ++- . |++.||..|..+|-.+
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 45788888765431 111 2 6777777776665443
No 196
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=43.30 E-value=51 Score=19.81 Aligned_cols=46 Identities=15% Similarity=0.064 Sum_probs=25.1
Q ss_pred ccchhhcchhHHHHHHHHhhcCCCCchhHHHHHHH--HHHHHHHHHhh
Q 029826 96 GLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARV--YIAMIFSAVYI 141 (187)
Q Consensus 96 ~~~~~l~~~p~ll~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Y~ 141 (187)
++.+.+++...--.++++....++..+|..+-.-+ -++++|++.|+
T Consensus 6 ~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 6 QFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFF 53 (68)
T ss_dssp SSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777777776665553321111 24455555555
No 197
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.08 E-value=21 Score=18.36 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=9.2
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2en6_A 10 EKPYGCNECGKTFSQ 24 (46)
T ss_dssp SCCEEETTTTEEESS
T ss_pred CcCeECCCCCcccCc
Confidence 344667777766554
No 198
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.98 E-value=37 Score=19.80 Aligned_cols=32 Identities=22% Similarity=0.476 Sum_probs=16.4
Q ss_pred cccccccccccCc-EEccCCCcccHHHHHHHHH
Q 029826 8 DVCSVCHGNFNVP-CQANCSHWFCGNCIMLVWD 39 (187)
Q Consensus 8 ~~C~iC~~~~~~p-v~~~C~H~fC~~Ci~~~~~ 39 (187)
+.|..|...+... ....=+..||..|..+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 4555565554322 2233455666666665554
No 199
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=42.50 E-value=7.1 Score=21.71 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=8.0
Q ss_pred CCCCcccccccc
Q 029826 4 PPCGDVCSVCHG 15 (187)
Q Consensus 4 ~~~~~~C~iC~~ 15 (187)
.+++..||+|..
T Consensus 27 lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 27 LPDDWCCPVCGV 38 (46)
T ss_dssp SCTTCBCTTTCC
T ss_pred CCCCCcCcCCCC
Confidence 456667777764
No 200
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=42.01 E-value=13 Score=26.29 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=31.3
Q ss_pred CCCccccccccccc----CcEE-ccCCCcccHHHHHHHHHhCCCCCCCCCcccccc
Q 029826 5 PCGDVCSVCHGNFN----VPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (187)
Q Consensus 5 ~~~~~C~iC~~~~~----~pv~-~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~ 55 (187)
.++..|.+|...|. .... ..|.|.+|..|-. +. .......|-.|+..
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~--~~--~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH--AH--PEEQGWLCDPCHLA 117 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE--CC--SSSSSCEEHHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc--cc--CCCCcEeeHHHHHH
Confidence 35789999999653 2223 3599999999973 11 12345689999654
No 201
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.67 E-value=24 Score=18.05 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=8.3
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
....|++|...|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2yso_A 11 KSHQCRECGEIFFQ 24 (46)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCEEccccChhhCC
Confidence 34667776665554
No 202
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.20 E-value=26 Score=17.70 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=8.3
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...+..
T Consensus 9 k~~~C~~C~k~f~~ 22 (44)
T 2emx_A 9 KPFGCSCCEKAFSS 22 (44)
T ss_dssp CCEECSSSSCEESS
T ss_pred cCccCCCCCcccCC
Confidence 44667776665554
No 203
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=41.17 E-value=7.7 Score=19.17 Aligned_cols=14 Identities=14% Similarity=0.161 Sum_probs=7.7
Q ss_pred CcccccccccccCc
Q 029826 7 GDVCSVCHGNFNVP 20 (187)
Q Consensus 7 ~~~C~iC~~~~~~p 20 (187)
...||+|...+.++
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 45566666655443
No 204
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=40.99 E-value=5.7 Score=32.53 Aligned_cols=32 Identities=22% Similarity=0.530 Sum_probs=0.0
Q ss_pred CcccccccccccCcE----EccCCCcccHHHHHHHH
Q 029826 7 GDVCSVCHGNFNVPC----QANCSHWFCGNCIMLVW 38 (187)
Q Consensus 7 ~~~C~iC~~~~~~pv----~~~C~H~fC~~Ci~~~~ 38 (187)
...|..|...|..-. -..||+.||..|.....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 457999998765221 23699999999986543
No 205
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.96 E-value=16 Score=18.78 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=8.3
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2ytg_A 11 KPFKCGECGKSYNQ 24 (46)
T ss_dssp CSEECTTTCCEESS
T ss_pred CCeECCCCCcccCC
Confidence 34567766665554
No 206
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.26 E-value=19 Score=18.56 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=8.8
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2em8_A 10 EKPYKCVECGKGYKR 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCeECcccCchhCC
Confidence 344667777665554
No 207
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=39.80 E-value=24 Score=21.08 Aligned_cols=29 Identities=28% Similarity=0.751 Sum_probs=21.5
Q ss_pred CCCCcccccccccccC-cEEccCCCcccHH
Q 029826 4 PPCGDVCSVCHGNFNV-PCQANCSHWFCGN 32 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~-pv~~~C~H~fC~~ 32 (187)
+.....|..|...+.- +..-.||.+||..
T Consensus 12 k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp CSSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CCcCCcChhhCCccCccCEEeecCCEeccc
Confidence 3456889999985443 4566799999984
No 208
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=39.62 E-value=24 Score=19.77 Aligned_cols=41 Identities=15% Similarity=0.381 Sum_probs=24.0
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHh-C-CCCCCCCCccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDH-G-STLQACRCPLCRRRI 56 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~-~-~~~~~~~Cp~Cr~~~ 56 (187)
+..+.|++|...+... .-+...... . ....+..|+.|...+
T Consensus 8 ~k~~~C~~C~k~f~~~-----------~~l~~H~~~~H~~~~~~~~C~~C~k~f 50 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHI-----------SNFCRHYVTSHKRNVKVYPCPFCFKEF 50 (66)
T ss_dssp TTEEECTTTCCEESSH-----------HHHHHHHHHHSSSSCCCEECTTTCCEE
T ss_pred CcceECCCCcchhCCH-----------HHHHHHHHHHcCCCCcCeECCCCCCcc
Confidence 3446788877766543 333344333 2 223467999998766
No 209
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.28 E-value=20 Score=18.41 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=8.4
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2emp_A 11 KPYMCNECGKAFSV 24 (46)
T ss_dssp CSEECSSSCCEESC
T ss_pred cCeECCCCCchhCC
Confidence 44667777665554
No 210
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.14 E-value=21 Score=18.32 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=8.4
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2emh_A 11 RPYICTVCGKAFTD 24 (46)
T ss_dssp CSEECTTTCCEESS
T ss_pred CCcCCCCCCchhCC
Confidence 44667776665554
No 211
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.88 E-value=18 Score=22.15 Aligned_cols=50 Identities=22% Similarity=0.646 Sum_probs=29.8
Q ss_pred CCccccccccccc-CcEEc---cCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 6 CGDVCSVCHGNFN-VPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 6 ~~~~C~iC~~~~~-~pv~~---~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
+...| +|..... +-.++ .|..+|-..|+.-.-..........||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34455 8988653 22333 388899999984222211112467999998654
No 212
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=38.84 E-value=12 Score=21.37 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=8.2
Q ss_pred CCCCcccccccc
Q 029826 4 PPCGDVCSVCHG 15 (187)
Q Consensus 4 ~~~~~~C~iC~~ 15 (187)
.+++..||+|..
T Consensus 33 lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 33 LPDDWACPVCGA 44 (52)
T ss_dssp SCTTCCCSSSCC
T ss_pred CCCCCcCCCCCC
Confidence 466677777765
No 213
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.64 E-value=20 Score=18.43 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=8.5
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2eoo_A 11 RPYGCNECGKNFGR 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCEEccccCcccCC
Confidence 34667777665554
No 214
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=38.00 E-value=6.4 Score=20.25 Aligned_cols=17 Identities=35% Similarity=0.872 Sum_probs=12.5
Q ss_pred EccCCCcccHHHHHHHH
Q 029826 22 QANCSHWFCGNCIMLVW 38 (187)
Q Consensus 22 ~~~C~H~fC~~Ci~~~~ 38 (187)
+.+|.|+.|..|--...
T Consensus 9 mascehtmcgycqgply 25 (40)
T 1erd_A 9 MASCEHTMCGYCQGPLY 25 (40)
T ss_dssp HHHTCGGGGGGSCHHHH
T ss_pred HHhccccccccccCCee
Confidence 45799999998865443
No 215
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=37.97 E-value=41 Score=21.29 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=11.1
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...+..
T Consensus 5 ~~~~~C~~C~~~f~~ 19 (124)
T 2dlq_A 5 SSGVECPTCHKKFLS 19 (124)
T ss_dssp CSSCCCTTTCCCCSS
T ss_pred CCCCCCCCCCCcCCC
Confidence 456789998887754
No 216
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=37.69 E-value=3.9 Score=23.86 Aligned_cols=49 Identities=22% Similarity=0.471 Sum_probs=28.1
Q ss_pred CCcccccccccccCcEEc-cCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 6 CGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv~~-~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
.+..|.+|.+. .+=+.- .|...|-..|+..-+.... .+...||.|....
T Consensus 4 ~~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p-~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTIP-KGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC-SSCEECSSSSCEECGGGSSSCCSSCC-CSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC-CcEEEcCCCCcCEECCcCCCCcCCCC-CCceEChhccChh
Confidence 45678888863 111111 4777777777764333222 3566888886533
No 217
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=37.55 E-value=0.9 Score=28.73 Aligned_cols=41 Identities=29% Similarity=0.600 Sum_probs=24.9
Q ss_pred cccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccccc
Q 029826 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (187)
Q Consensus 8 ~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~~ 58 (187)
..||.|...+.. .=++.+|..|-..+-.. + -||.|.+++..
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~~~-----a-fCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDFSLQ-----A-LCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEEEEE-----E-ECSSSCSCCCE
T ss_pred CCCCCCCCcccc----CCCceECccccccCCCc-----c-cCcchhhHHHH
Confidence 689999986542 11144477775432221 1 79999888854
No 218
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=37.52 E-value=39 Score=20.72 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=14.5
Q ss_pred ccchhhcchhHHHHHHHHhhcCCCCchh
Q 029826 96 GLFQRIQDLPFLLRRLVRELVDPHRSLP 123 (187)
Q Consensus 96 ~~~~~l~~~p~ll~~l~~~~~~~~~~~~ 123 (187)
++.+.+++...-..++++....++..+|
T Consensus 7 ~~~e~~~~f~kd~~rvlk~~~KPdr~EF 34 (74)
T 1rh5_B 7 QKIEQLKEFIEECRRVWLVLKKPTKDEY 34 (74)
T ss_dssp -----CCHHHHHHHHHHHSEECCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3445555555666777777776664444
No 219
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=37.30 E-value=26 Score=21.42 Aligned_cols=32 Identities=16% Similarity=0.503 Sum_probs=23.6
Q ss_pred CCCcccccccccc-cCcE--EccCCCcccHHHHHH
Q 029826 5 PCGDVCSVCHGNF-NVPC--QANCSHWFCGNCIML 36 (187)
Q Consensus 5 ~~~~~C~iC~~~~-~~pv--~~~C~H~fC~~Ci~~ 36 (187)
..+..|..|.+.. ..++ -+.|..+||..|++.
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 3468899998754 3333 357999999999975
No 220
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.24 E-value=17 Score=18.71 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=8.8
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ytt_A 10 EKPYQCSECGKSFSG 24 (46)
T ss_dssp CCTTCCSSSCCCCSS
T ss_pred CCCeeCCCCCcccCC
Confidence 344667776666554
No 221
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=36.26 E-value=26 Score=20.81 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=27.8
Q ss_pred CCcccccccccccC-cEEccCCCcccH-HHHHHHHHhCCCCCCCCCccccccc
Q 029826 6 CGDVCSVCHGNFNV-PCQANCSHWFCG-NCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 6 ~~~~C~iC~~~~~~-pv~~~C~H~fC~-~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
+=+.|..|...+.. +....=|..||. .|..+.+. . .|.-|....
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~--~-----~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG--P-----KGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS--C-----CCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC--c-----cCCCcCCce
Confidence 34678888877654 334445678898 58865332 2 777776543
No 222
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=36.11 E-value=13 Score=23.38 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=6.2
Q ss_pred CCCCcccccccc
Q 029826 4 PPCGDVCSVCHG 15 (187)
Q Consensus 4 ~~~~~~C~iC~~ 15 (187)
.+++..||+|..
T Consensus 57 lPddW~CPvCga 68 (81)
T 2kn9_A 57 IPDDWSCPDCGA 68 (81)
T ss_dssp SCTTCCCTTTCC
T ss_pred CCCCCcCCCCCC
Confidence 344555555554
No 223
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=36.05 E-value=8.6 Score=24.56 Aligned_cols=48 Identities=19% Similarity=0.424 Sum_probs=30.4
Q ss_pred CCCcccccccccccCcEE-ccCCCcccHHHHHHHHHhCCCCCCCCCccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~-~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~ 54 (187)
+.+..|.+|.+-- +=+. -.|.-.|-..|+.+-+... ..+...||.|+.
T Consensus 23 ~n~~~C~vC~~~g-~LL~CD~C~~~fH~~Cl~PpL~~~-P~g~W~C~~C~~ 71 (88)
T 1fp0_A 23 DSATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDV-PGEEWSCSLCHV 71 (88)
T ss_dssp SSSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCCCC-CSSSCCCCSCCC
T ss_pred CCCCcCcCcCCCC-CEEECCCCCCceecccCCCCCCCC-cCCCcCCccccC
Confidence 4567899999742 1111 1477777778876544332 346789999975
No 224
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=35.81 E-value=15 Score=24.27 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=20.5
Q ss_pred CcccccccccccCcEEccCCCcccHH
Q 029826 7 GDVCSVCHGNFNVPCQANCSHWFCGN 32 (187)
Q Consensus 7 ~~~C~iC~~~~~~pv~~~C~H~fC~~ 32 (187)
...|..|...-..-+-+.|||.+|.+
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECT
T ss_pred CCcCccccCCCCeeeeeecCccccCC
Confidence 45799998866666678899999964
No 225
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.70 E-value=21 Score=18.31 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=9.1
Q ss_pred CCCcccccccccccC
Q 029826 5 PCGDVCSVCHGNFNV 19 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~ 19 (187)
+..+.|++|...|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2yu8_A 10 EKPYKCNECGKVFTQ 24 (46)
T ss_dssp CSSEECSSSCCEESS
T ss_pred CCCeECCcCCchhCC
Confidence 344667777666554
No 226
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.51 E-value=2.8 Score=26.99 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=29.0
Q ss_pred CCCCcccccccccccCcEEc---cCCCcccHHHHHHHHHhCCCCCCCCCcccccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~---~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~ 55 (187)
..++..|.+|...-....++ .|...|-..|+..-+... ..+...||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~-P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEI-PRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSC-CSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccC-CCCCcCCccCcCc
Confidence 35667899998743221222 466666666765323222 2456688888653
No 227
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.48 E-value=48 Score=16.76 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=7.5
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ep3_A 11 KPYRCAECGKAFTD 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeECCCCCchhCC
Confidence 34566666555443
No 228
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.28 E-value=25 Score=20.45 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=4.6
Q ss_pred cccccccccc
Q 029826 9 VCSVCHGNFN 18 (187)
Q Consensus 9 ~C~iC~~~~~ 18 (187)
.|.-|.+.+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8x_A 7 GCHQCGEFII 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCCEec
Confidence 4445544433
No 229
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=33.78 E-value=11 Score=21.39 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=7.9
Q ss_pred CCCCcccccccc
Q 029826 4 PPCGDVCSVCHG 15 (187)
Q Consensus 4 ~~~~~~C~iC~~ 15 (187)
.+++..||+|..
T Consensus 32 lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 32 LPDDWVCPLCGA 43 (52)
T ss_dssp SCTTCBCTTTCC
T ss_pred CCCCCcCCCCCC
Confidence 456667777765
No 230
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=33.03 E-value=20 Score=21.59 Aligned_cols=40 Identities=18% Similarity=0.416 Sum_probs=22.7
Q ss_pred CCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 6 ~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
..+.|++|...+... .-+...+.......+..|+.|...+
T Consensus 2 k~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~~~~~C~~C~k~f 41 (88)
T 1llm_C 2 KPFQCRICMRNFSRS-----------DHLTTHIRTHTGEKPFACDICGRKF 41 (88)
T ss_dssp CCEECTTTCCEESCH-----------HHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred CCCcCCCCCCccCCH-----------HHHHHHHHHcCCCCCccCCCCCCcc
Confidence 346788888776653 2222322221122356899998766
No 231
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=32.97 E-value=3.9 Score=24.60 Aligned_cols=51 Identities=24% Similarity=0.561 Sum_probs=28.2
Q ss_pred CCCCCcccccccccccCcEEcc-----CCCcccHHHHHHHHHhCC---CCCCCCCccccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQAN-----CSHWFCGNCIMLVWDHGS---TLQACRCPLCRR 54 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~~-----C~H~fC~~Ci~~~~~~~~---~~~~~~Cp~Cr~ 54 (187)
.|++...| ||.....+..++. |..+|-..|+.-.-.... .-....||.||.
T Consensus 6 ~~e~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 6 QPEAKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CSSCEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCCCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 35666778 7976555444553 555777788621000000 012468999974
No 232
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=32.75 E-value=12 Score=21.51 Aligned_cols=12 Identities=33% Similarity=0.573 Sum_probs=6.9
Q ss_pred CCCCcccccccc
Q 029826 4 PPCGDVCSVCHG 15 (187)
Q Consensus 4 ~~~~~~C~iC~~ 15 (187)
.+++..||+|..
T Consensus 33 lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 33 IPDDWVCPLCGV 44 (54)
T ss_dssp SCTTCBCTTTCC
T ss_pred CCCCCcCcCCCC
Confidence 345566666654
No 233
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.66 E-value=12 Score=21.58 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=7.2
Q ss_pred CCCCcccccccc
Q 029826 4 PPCGDVCSVCHG 15 (187)
Q Consensus 4 ~~~~~~C~iC~~ 15 (187)
.+++..||+|..
T Consensus 33 lP~dw~CP~Cga 44 (55)
T 2v3b_B 33 IPADWVCPDCGV 44 (55)
T ss_dssp SCTTCCCTTTCC
T ss_pred CCCCCcCCCCCC
Confidence 355566666654
No 234
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=32.09 E-value=1.5e+02 Score=21.70 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhccc---c-cCcchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029826 131 YIAMIFSAVYIFSPI---D-IIPEALLGI-VGLLDDLLIALLCFLHVAALYRAVLYNR 183 (187)
Q Consensus 131 ~~~~~~~~~Y~~~P~---D-~iPd~~~~~-~G~~DD~~v~~~~~~~~~~~~~~~~~~r 183 (187)
.+..++.+..++.|- + ++||....+ ..++.|++-++.++.-+.-.+||+...+
T Consensus 60 l~l~~g~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~G~~~l~~RR~~~~~ 117 (225)
T 1q16_C 60 LGIFVGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCLIGGVLLLKRRLFSPR 117 (225)
T ss_dssp HHHHHHHHHHHHSCTTC-CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhhHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 344445544445454 2 367754665 8899999999999999999999986543
No 235
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=32.01 E-value=3.9 Score=24.26 Aligned_cols=54 Identities=15% Similarity=0.369 Sum_probs=32.0
Q ss_pred CCCCCccccccccccc---CcEEc--cCCCcccHHHHHHHHHhC--CCCCCCCCccccccc
Q 029826 3 GPPCGDVCSVCHGNFN---VPCQA--NCSHWFCGNCIMLVWDHG--STLQACRCPLCRRRI 56 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~---~pv~~--~C~H~fC~~Ci~~~~~~~--~~~~~~~Cp~Cr~~~ 56 (187)
.+.++..|.+|..... +.... .|...|-..|+..-+... ...+...|+.|....
T Consensus 2 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 2 SSGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4678889999997532 22222 477777777775422110 013456899996543
No 236
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=31.91 E-value=55 Score=21.50 Aligned_cols=33 Identities=21% Similarity=0.530 Sum_probs=19.8
Q ss_pred cCCCcccHHHH------HHHHHhCCCCCCCCCccccccc
Q 029826 24 NCSHWFCGNCI------MLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 24 ~C~H~fC~~Ci------~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
.|++||+..|. .+.+..........||.|....
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 37888888885 2222332223356999997543
No 237
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=31.79 E-value=8.8 Score=24.34 Aligned_cols=41 Identities=12% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCCCCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 2 ~~~~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
...+..+.||.|...-.-.+.+ ......+...|-.|.+.+.
T Consensus 18 ~~L~t~F~CPfCnh~~sV~vki---------------dk~~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 18 GTLETQFTCPFCNHEKSCDVKM---------------DRARNTGVISCTVCLEEFQ 58 (85)
T ss_dssp CCCSSCCCCTTTCCSSCEEEEE---------------ETTTTEEEEEESSSCCEEE
T ss_pred CCCCCeEcCCCCCCCCeEEEEE---------------EccCCEEEEEcccCCCeEE
Confidence 3456778888887753222222 1222345678999987664
No 238
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=31.15 E-value=13 Score=22.56 Aligned_cols=9 Identities=44% Similarity=1.080 Sum_probs=4.4
Q ss_pred CCccccccc
Q 029826 48 RCPLCRRRI 56 (187)
Q Consensus 48 ~Cp~Cr~~~ 56 (187)
.||.|..+-
T Consensus 42 ~CP~Cga~K 50 (70)
T 1dx8_A 42 MCPACRSPK 50 (70)
T ss_dssp BCTTTCCBG
T ss_pred cCCCCCCCH
Confidence 455555443
No 239
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.08 E-value=38 Score=21.17 Aligned_cols=12 Identities=25% Similarity=0.955 Sum_probs=7.6
Q ss_pred CCCCCccccccc
Q 029826 45 QACRCPLCRRRI 56 (187)
Q Consensus 45 ~~~~Cp~Cr~~~ 56 (187)
....|+.|...+
T Consensus 64 ~~~~C~~C~~~f 75 (110)
T 2csh_A 64 KPYECNICAKRF 75 (110)
T ss_dssp CCEECSSSCCEE
T ss_pred CCeeCCCCcchh
Confidence 345777776655
No 240
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.07 E-value=47 Score=19.21 Aligned_cols=41 Identities=20% Similarity=0.453 Sum_probs=24.0
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHH-hCCC-CCCCCCccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWD-HGST-LQACRCPLCRRRI 56 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~-~~~~-~~~~~Cp~Cr~~~ 56 (187)
+..+.|++|...|... .-+...+. .... .....|+.|...+
T Consensus 13 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~h~~~~~~~~C~~C~~~f 55 (77)
T 2ct1_A 13 EKPYECYICHARFTQS-----------GTMKMHILQKHTENVAKFHCPHCDTVI 55 (77)
T ss_dssp CCSEECTTTCCEESCH-----------HHHHHHHHHHSSSSCSSEECSSSSCEE
T ss_pred CCCeECCCcCchhCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCcc
Confidence 4457788887766543 33334433 2221 2457999998766
No 241
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=30.73 E-value=41 Score=20.02 Aligned_cols=28 Identities=25% Similarity=0.657 Sum_probs=20.8
Q ss_pred CCCcccccccccccC-cEEccCCCcccHH
Q 029826 5 PCGDVCSVCHGNFNV-PCQANCSHWFCGN 32 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~-pv~~~C~H~fC~~ 32 (187)
.....|..|...+.- +..--||..||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred CcCCcChhhCCcccccCeEeecCCEeccc
Confidence 456789999986443 4556799999984
No 242
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.04 E-value=53 Score=16.64 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=8.0
Q ss_pred CCcccccccccccC
Q 029826 6 CGDVCSVCHGNFNV 19 (187)
Q Consensus 6 ~~~~C~iC~~~~~~ 19 (187)
..+.|++|...|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2em2_A 11 KPFKCKECGKAFRQ 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCEECCcCCchhCC
Confidence 34566666665543
No 243
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=29.91 E-value=19 Score=21.13 Aligned_cols=32 Identities=28% Similarity=0.734 Sum_probs=18.2
Q ss_pred CCCCCccccccccc-ccCcE---EccCCCcccHHHH
Q 029826 3 GPPCGDVCSVCHGN-FNVPC---QANCSHWFCGNCI 34 (187)
Q Consensus 3 ~~~~~~~C~iC~~~-~~~pv---~~~C~H~fC~~Ci 34 (187)
...+...|.||... |.+.. -.-|.-.||..|=
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCG 40 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCG 40 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSE
T ss_pred ccCCcchhhhhccceeccCCCccccccCCeeecccC
Confidence 45678899999973 33321 1124445555553
No 244
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=29.58 E-value=37 Score=20.43 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=31.2
Q ss_pred CCCCcccccccccc---cCcEEc--cCCCcccHHHHHHHHHhCCCCCCCCCcccccc
Q 029826 4 PPCGDVCSVCHGNF---NVPCQA--NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (187)
Q Consensus 4 ~~~~~~C~iC~~~~---~~pv~~--~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~ 55 (187)
..++..|.||.+.- .+.... .|.-.|-..|+..- ....+...||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~---~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---YIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS---SCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC---cCCCCCcCCccCcCc
Confidence 46678899998642 122222 47778888888542 123456789999653
No 245
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=29.09 E-value=66 Score=20.00 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=14.7
Q ss_pred cchhhcchhHHHHHHHHhhcCCCCchh
Q 029826 97 LFQRIQDLPFLLRRLVRELVDPHRSLP 123 (187)
Q Consensus 97 ~~~~l~~~p~ll~~l~~~~~~~~~~~~ 123 (187)
+.+.+++...--.++++....++...|
T Consensus 21 ~~e~~~~f~kd~~rvlk~~~KPdr~Ef 47 (80)
T 2ww9_B 21 LVEAPVEFVREGTQFLAKCKKPDLKEY 47 (80)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 344555555555666666666554444
No 246
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.07 E-value=32 Score=20.66 Aligned_cols=49 Identities=20% Similarity=0.552 Sum_probs=30.3
Q ss_pred CCCCCcccccccccccCcEEccCC------CcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 3 GPPCGDVCSVCHGNFNVPCQANCS------HWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 3 ~~~~~~~C~iC~~~~~~pv~~~C~------H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
.+++...| +|...... .++.|. .+|-..|+.- .. ...+...||.|+...
T Consensus 2 ~~~~~~yC-~C~~~~~g-~MI~CD~cdC~~~WfH~~Cvgl--~~-~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 2 SSGSSGYC-ICNQVSYG-EMVGCDNQDCPIEWFHYGCVGL--TE-APKGKWYCPQCTAAM 56 (70)
T ss_dssp CCSCCCCS-TTSCCCCS-SEECCSCTTCSCCCEEHHHHTC--SS-CCSSCCCCHHHHHHH
T ss_pred CCCCCeEE-EcCCCCCC-CEeEeCCCCCCccCCccccccc--Cc-CCCCCEECCCCCccc
Confidence 45666777 58875433 455433 6888999862 22 224567899996544
No 247
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=28.44 E-value=58 Score=15.81 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=10.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHH
Q 029826 149 PEALLGIVGLLDDLLIALLCFLH 171 (187)
Q Consensus 149 Pd~~~~~~G~~DD~~v~~~~~~~ 171 (187)
.|.+.|++.++.=++.-.+++++
T Consensus 6 weviaglvalltflafgfwlfky 28 (32)
T 2lx0_A 6 WEVIAGLVALLTFLAFGFWLFKY 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444444455444
No 248
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=28.06 E-value=39 Score=19.22 Aligned_cols=12 Identities=25% Similarity=0.880 Sum_probs=9.2
Q ss_pred CCCCCccccccc
Q 029826 45 QACRCPLCRRRI 56 (187)
Q Consensus 45 ~~~~Cp~Cr~~~ 56 (187)
....|+.|...+
T Consensus 48 ~~~~C~~C~~~f 59 (73)
T 1f2i_G 48 KPFQCRICMRNF 59 (73)
T ss_dssp CCEECTTTCCEE
T ss_pred CCeECCCCCchh
Confidence 356899998766
No 249
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.48 E-value=59 Score=20.20 Aligned_cols=12 Identities=17% Similarity=0.722 Sum_probs=9.3
Q ss_pred CCCCCccccccc
Q 029826 45 QACRCPLCRRRI 56 (187)
Q Consensus 45 ~~~~Cp~Cr~~~ 56 (187)
....|+.|.+.+
T Consensus 61 k~~~C~~Cgk~F 72 (96)
T 2ctd_A 61 EMFTCHHCGKQL 72 (96)
T ss_dssp CCCCCSSSCCCC
T ss_pred CCeECCCCCCee
Confidence 456899998766
No 250
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.46 E-value=59 Score=18.94 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCC----CCCCCccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTL----QACRCPLCRRRI 56 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~----~~~~Cp~Cr~~~ 56 (187)
+..+.|++|...+... .-+.+.+...... ....|+.|...+
T Consensus 13 ~k~~~C~~C~~~f~~~-----------~~l~~H~~~~~~~~~~~~~~~C~~C~~~f 57 (86)
T 1x6h_A 13 EKPYACSHCDKTFRQK-----------QLLDMHFKRYHDPNFVPAAFVCSKCGKTF 57 (86)
T ss_dssp CCCEECSSSSCEESSH-----------HHHHHHHHHTTCSSCCCCCEECSSSCCEE
T ss_pred CCCCcCCCCCCccCCH-----------HHHHHHHHHhcCCcCCCcceECCCCCChh
Confidence 3446788777766542 3344444322211 356899998766
No 251
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=27.19 E-value=51 Score=17.43 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=21.5
Q ss_pred cCcchhhhHHHHHHHHHHHHHHHHHHH
Q 029826 147 IIPEALLGIVGLLDDLLIALLCFLHVA 173 (187)
Q Consensus 147 ~iPd~~~~~~G~~DD~~v~~~~~~~~~ 173 (187)
.+|-...|++|++=-+...++++.+|-
T Consensus 9 ~LPsI~VPlVglvfPai~Mallf~yIe 35 (38)
T 1jb0_I 9 FLPWIFIPVVCWLMPTVVMGLLFLYIE 35 (38)
T ss_dssp THHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred hCChhhHhHHHHHHHHHHHHHHHHhhc
Confidence 367778899999988888888877764
No 252
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=27.08 E-value=20 Score=22.85 Aligned_cols=46 Identities=17% Similarity=0.417 Sum_probs=27.3
Q ss_pred CCCCcccccccccccCcEEcc---CC---CcccHHHHHHHHHhCCCCCCCCCcc-ccc
Q 029826 4 PPCGDVCSVCHGNFNVPCQAN---CS---HWFCGNCIMLVWDHGSTLQACRCPL-CRR 54 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~pv~~~---C~---H~fC~~Ci~~~~~~~~~~~~~~Cp~-Cr~ 54 (187)
+++...| +|....... ++. |. .+|-..|+. +... ..+...||. |++
T Consensus 23 ~~~~~yC-iC~~~~~g~-MI~CD~c~C~~eWfH~~CVg--l~~~-p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSYGP-MVACDNPACPFEWFHYGCVG--LKQA-PKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCSSS-EECCCSSSCSCSCEETTTSS--CSSC-TTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCCCC-EEEecCCCCccccCcCccCC--CCcC-CCCCccCChhhcc
Confidence 3556677 898744332 443 33 578888884 2222 235679999 864
No 253
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.89 E-value=49 Score=19.54 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=20.6
Q ss_pred CCCccccc--ccccccCcEEcc-CCCcccHH
Q 029826 5 PCGDVCSV--CHGNFNVPCQAN-CSHWFCGN 32 (187)
Q Consensus 5 ~~~~~C~i--C~~~~~~pv~~~-C~H~fC~~ 32 (187)
.....|+. |...-..|..-. |+..||..
T Consensus 10 ~~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 10 IFTNKCERAGCRQREMMKLTCERCSRNFCIK 40 (63)
T ss_dssp TTCCCCCSTTCCCCCSSCCBCSSSCCBCCHH
T ss_pred ccCCCCCccCCCCCCccceECCCCCcccCcc
Confidence 34568888 987655566666 99999984
No 254
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.83 E-value=29 Score=20.97 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=10.8
Q ss_pred CcccccccccccCcEEccCC
Q 029826 7 GDVCSVCHGNFNVPCQANCS 26 (187)
Q Consensus 7 ~~~C~iC~~~~~~pv~~~C~ 26 (187)
...|+-|...+....+..-+
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~ 34 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKN 34 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSS
T ss_pred CCCCccCCCEecceEEEECc
Confidence 34677777755544443333
No 255
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.58 E-value=49 Score=20.29 Aligned_cols=28 Identities=25% Similarity=0.676 Sum_probs=20.3
Q ss_pred CCCcccccccccccC-cEEccCCCcccHH
Q 029826 5 PCGDVCSVCHGNFNV-PCQANCSHWFCGN 32 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~-pv~~~C~H~fC~~ 32 (187)
.....|..|...+.- +..-.|+.+||..
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred ccCccchhhcCcccccceEeccCCEeccc
Confidence 456789999875433 4556799999984
No 256
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.57 E-value=19 Score=21.72 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=19.9
Q ss_pred CCCcccccccccccCc----EEccCCCcccHH
Q 029826 5 PCGDVCSVCHGNFNVP----CQANCSHWFCGN 32 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~p----v~~~C~H~fC~~ 32 (187)
.....|..|.....-+ ..--||..||..
T Consensus 13 ~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp SCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred ccCCcchhhCCeecccccCceEecCCCEehhc
Confidence 4457899998866544 334699999984
No 257
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.09 E-value=60 Score=18.65 Aligned_cols=11 Identities=18% Similarity=0.839 Sum_probs=4.9
Q ss_pred CCcccHHHHHH
Q 029826 26 SHWFCGNCIML 36 (187)
Q Consensus 26 ~H~fC~~Ci~~ 36 (187)
+..||..|..+
T Consensus 51 ~~~yC~~cy~~ 61 (69)
T 2cur_A 51 DQYYCVDCYKN 61 (69)
T ss_dssp SCEEEHHHHHH
T ss_pred CEEECHHHhHH
Confidence 34444444433
No 258
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.01 E-value=41 Score=20.14 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=25.2
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
.....|.-|.+.+...++..-+..|...| +.|-.|+.++.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C-------------F~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPEC-------------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTT-------------TSCSSSCCCHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCc-------------CeeCCCCCCCC
Confidence 44568999988776655555554443333 27778877763
No 259
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.78 E-value=43 Score=20.05 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=5.9
Q ss_pred cccccccccc
Q 029826 9 VCSVCHGNFN 18 (187)
Q Consensus 9 ~C~iC~~~~~ 18 (187)
.|..|.+.+.
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 1x63_A 17 KCKGCFKAIV 26 (82)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCcccc
Confidence 5666666554
No 260
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=24.51 E-value=50 Score=29.49 Aligned_cols=35 Identities=20% Similarity=0.599 Sum_probs=25.8
Q ss_pred CcccccccccccCc----------EEccCCCcccHHHHHHHHHhC
Q 029826 7 GDVCSVCHGNFNVP----------CQANCSHWFCGNCIMLVWDHG 41 (187)
Q Consensus 7 ~~~C~iC~~~~~~p----------v~~~C~H~fC~~Ci~~~~~~~ 41 (187)
.-.||+|.--..+- ..++||-+||.+|...+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~~ 57 (776)
T 4gut_A 13 TATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSH 57 (776)
T ss_dssp CCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHSTT
T ss_pred cccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhccC
Confidence 45788998755432 457899999999998776553
No 261
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.40 E-value=42 Score=21.16 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=20.6
Q ss_pred CCCccccc--ccccccCcEEcc-CCCcccHH
Q 029826 5 PCGDVCSV--CHGNFNVPCQAN-CSHWFCGN 32 (187)
Q Consensus 5 ~~~~~C~i--C~~~~~~pv~~~-C~H~fC~~ 32 (187)
.....|+. |...-..|..-. |+..||..
T Consensus 23 ~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 23 HKSYSCSFKGCTDVELVAVICPYCEKNFCLR 53 (86)
T ss_dssp SCCEECCSTTCCCEESSCEECTTTCCEECGG
T ss_pred CCCCCCCCcCCCCCCccceECCCCCcccccc
Confidence 34567887 887655777777 99999984
No 262
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=24.20 E-value=14 Score=24.36 Aligned_cols=29 Identities=21% Similarity=0.388 Sum_probs=16.1
Q ss_pred CCCcccHHHHHHHHHhCCCCCCCCCccccc
Q 029826 25 CSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (187)
Q Consensus 25 C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~ 54 (187)
|...|-..|+..-+... ..+...||.|+.
T Consensus 83 C~~~yH~~Cl~p~l~~~-P~~~W~C~~C~~ 111 (112)
T 3v43_A 83 CDRGFHMECCDPPLTRM-PKGMWICQICRP 111 (112)
T ss_dssp TCCEECGGGCSSCCSSC-CSSCCCCTTTSC
T ss_pred CCCeeecccCCCCCCCC-CCCCeECCCCCC
Confidence 66666666664433322 234567777764
No 263
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=23.59 E-value=38 Score=19.60 Aligned_cols=11 Identities=18% Similarity=0.860 Sum_probs=6.3
Q ss_pred CCCCccccccc
Q 029826 46 ACRCPLCRRRI 56 (187)
Q Consensus 46 ~~~Cp~Cr~~~ 56 (187)
...|+.|...+
T Consensus 57 ~~~C~~C~~~f 67 (82)
T 2kmk_A 57 PHKCQVCGKAF 67 (82)
T ss_dssp CEECTTTSCEE
T ss_pred CCcCCCcchhh
Confidence 34666665544
No 264
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=23.36 E-value=38 Score=20.09 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=6.5
Q ss_pred CCCCccccccc
Q 029826 46 ACRCPLCRRRI 56 (187)
Q Consensus 46 ~~~Cp~Cr~~~ 56 (187)
+..|+.|...+
T Consensus 62 ~~~C~~C~~~f 72 (90)
T 1a1h_A 62 PFACDICGRKF 72 (90)
T ss_dssp CEECTTTCCEE
T ss_pred CccCCCCCchh
Confidence 34677775544
No 265
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.03 E-value=64 Score=18.61 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=4.5
Q ss_pred cccccccccc
Q 029826 9 VCSVCHGNFN 18 (187)
Q Consensus 9 ~C~iC~~~~~ 18 (187)
.|.-|...+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1wyh_A 7 GCSACGETVM 16 (72)
T ss_dssp BCSSSCCBCC
T ss_pred CCccCCCccc
Confidence 4444444433
No 266
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.58 E-value=71 Score=20.99 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=23.2
Q ss_pred Cccccccccccc--CcEEccCCCcccHHHHHHHHHh
Q 029826 7 GDVCSVCHGNFN--VPCQANCSHWFCGNCIMLVWDH 40 (187)
Q Consensus 7 ~~~C~iC~~~~~--~pv~~~C~H~fC~~Ci~~~~~~ 40 (187)
=+.|..|...+. ......=+..||..|..+.+..
T Consensus 36 CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred cCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 367778887773 2344445788999998877654
No 267
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=22.34 E-value=41 Score=19.84 Aligned_cols=49 Identities=18% Similarity=0.448 Sum_probs=27.2
Q ss_pred CCCCcccccccccccCc-EEc----cCCCcccHHHHHHH------HHhCCCCCCCCCcccc
Q 029826 4 PPCGDVCSVCHGNFNVP-CQA----NCSHWFCGNCIMLV------WDHGSTLQACRCPLCR 53 (187)
Q Consensus 4 ~~~~~~C~iC~~~~~~p-v~~----~C~H~fC~~Ci~~~------~~~~~~~~~~~Cp~Cr 53 (187)
.+....|++|.....+- -.+ .|..+|-..|+.-. +.... .+...||.|.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~-~~~w~C~~C~ 64 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEA-SAVWGCDTCM 64 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCT-TEEECCHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccC-CCcEECcCcc
Confidence 45667899999865432 222 57788989998211 11111 2345888885
No 268
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=21.97 E-value=53 Score=20.59 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=31.7
Q ss_pred CCCcccccccccc--cCcEEc---cCCCcccHHHHHHHHHhCCCCCCCCCccccccc
Q 029826 5 PCGDVCSVCHGNF--NVPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (187)
Q Consensus 5 ~~~~~C~iC~~~~--~~pv~~---~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~ 56 (187)
+++..|.+|...- ..-.++ .|.-.|-..|+..-. ...+...||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS---CCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc---cCCCceECccccCcc
Confidence 5678999999753 111222 477788888886421 234567999997644
No 269
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.88 E-value=5.3 Score=25.39 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=30.4
Q ss_pred CCccccccccccc---CcEEc--cCCCcccHHHHHHHHHh---CCCCCCCCCcccccccc
Q 029826 6 CGDVCSVCHGNFN---VPCQA--NCSHWFCGNCIMLVWDH---GSTLQACRCPLCRRRIT 57 (187)
Q Consensus 6 ~~~~C~iC~~~~~---~pv~~--~C~H~fC~~Ci~~~~~~---~~~~~~~~Cp~Cr~~~~ 57 (187)
++..|.+|...-. +.... .|...|-..|+..-+.. ....+.+.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4567999987532 33333 47777777777543321 11235568999876553
No 270
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=21.70 E-value=44 Score=19.04 Aligned_cols=15 Identities=13% Similarity=0.472 Sum_probs=7.4
Q ss_pred ccccccccccCcEEc
Q 029826 9 VCSVCHGNFNVPCQA 23 (187)
Q Consensus 9 ~C~iC~~~~~~pv~~ 23 (187)
.|+.|.+.+....+.
T Consensus 7 ~C~~C~~~I~~~~~~ 21 (66)
T 1nyp_A 7 ICGACRRPIEGRVVN 21 (66)
T ss_dssp EETTTTEECCSCEEC
T ss_pred CCcccCCEecceEEE
Confidence 455565544444333
No 271
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.46 E-value=60 Score=19.86 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
.....|.-|.+.+...++..-+..|...| +.|-.|+.++.
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C-------------F~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC-------------FVCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT-------------CCCSSSCCCTT
T ss_pred CcCCCcccCCCEecccEEEECCceECccC-------------CEecCCCCCCC
Confidence 34457888888766555444444443333 37788877764
No 272
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.94 E-value=33 Score=19.92 Aligned_cols=42 Identities=14% Similarity=0.338 Sum_probs=23.3
Q ss_pred CCCcccccccccccCcEEccCCCcccHHHHHHHHHhCC---CCCCCCCcccccccc
Q 029826 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGS---TLQACRCPLCRRRIT 57 (187)
Q Consensus 5 ~~~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~---~~~~~~Cp~Cr~~~~ 57 (187)
+..+.|.+|...|..... +...++... ......|+.|...+.
T Consensus 5 ~k~~~C~~C~k~f~~~~~-----------L~~H~~~h~~~~~~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKAS-----------LNWHQRKHAETVAALRFPCEFCGKRFE 49 (78)
T ss_dssp CCCEECSSSCCEESSHHH-----------HHHHHHHHHHHTTTCCEECTTTCCEES
T ss_pred CcCeECCCCCCeeCCHHH-----------HHHHHHHhhccCCCcccCCCCCCchhC
Confidence 455788888877665322 222221111 123569999987763
No 273
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.72 E-value=78 Score=20.45 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=24.0
Q ss_pred CCcccccccccccC---cEEccCCCcccHHHHHHHHHh
Q 029826 6 CGDVCSVCHGNFNV---PCQANCSHWFCGNCIMLVWDH 40 (187)
Q Consensus 6 ~~~~C~iC~~~~~~---pv~~~C~H~fC~~Ci~~~~~~ 40 (187)
+=+.|..|...+.+ .....=|..||..|..+.+..
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 34678888887753 333445778999998876654
No 274
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.71 E-value=93 Score=17.76 Aligned_cols=11 Identities=27% Similarity=0.618 Sum_probs=5.3
Q ss_pred CCcccHHHHHH
Q 029826 26 SHWFCGNCIML 36 (187)
Q Consensus 26 ~H~fC~~Ci~~ 36 (187)
+..||..|..+
T Consensus 51 ~~~yC~~cy~~ 61 (70)
T 2d8z_A 51 DFAYCLNCFCD 61 (70)
T ss_dssp SSEECHHHHHH
T ss_pred CeEECHHHHHH
Confidence 34455555443
No 275
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=20.46 E-value=25 Score=22.61 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=18.5
Q ss_pred CCcccccccccccC-cEEcc--CCCcccHH
Q 029826 6 CGDVCSVCHGNFNV-PCQAN--CSHWFCGN 32 (187)
Q Consensus 6 ~~~~C~iC~~~~~~-pv~~~--C~H~fC~~ 32 (187)
....|..|...-.+ -+-+. |||.+|.+
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 35679999853333 35566 99999954
No 276
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.35 E-value=38 Score=20.89 Aligned_cols=38 Identities=13% Similarity=0.391 Sum_probs=23.9
Q ss_pred CcccccccccccCcEEccCCCcccHHHHHHHHHhCCCCCCCCCcccccccc
Q 029826 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (187)
Q Consensus 7 ~~~C~iC~~~~~~pv~~~C~H~fC~~Ci~~~~~~~~~~~~~~Cp~Cr~~~~ 57 (187)
...|.-|...+....+..-+..|...| +.|..|+.++.
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~C-------------F~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEE-------------FNCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTT-------------CBCSSSCCBCS
T ss_pred CCCCccCCCEecceEEEECCccccccC-------------CccCCCCCCCC
Confidence 356888888776655555454443333 37888887774
No 277
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=20.19 E-value=46 Score=20.85 Aligned_cols=12 Identities=25% Similarity=0.924 Sum_probs=9.9
Q ss_pred CCCCcccccccc
Q 029826 46 ACRCPLCRRRIT 57 (187)
Q Consensus 46 ~~~Cp~Cr~~~~ 57 (187)
.++||.|...+.
T Consensus 51 ~FkCP~CgEEFy 62 (95)
T 2k5c_A 51 VFKCPVCGEEFY 62 (95)
T ss_dssp EEECTTTCCEEE
T ss_pred hhcCCCccHHHh
Confidence 459999998884
Done!