BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029827
MAMASDSGLKIFAVVALAIAFCVQATLGEVTCESLDQNACAFAVSASGKRCVLEKQVKRS
GQETYTCKTSEIEAEKLNNWIETDQCIKSCGLDRKSLGISSDSLLESGFTQKLCSSPCYG
SCPNIVDLYFNLAAGEGVFLPKLCEAQGKGARRRMSEIKSSGYVAPAPLKSVAYLAAPLS
APPMAPY

High Scoring Gene Products

Symbol, full name Information P value
AT5G52390 protein from Arabidopsis thaliana 1.2e-51
AT3G54040 protein from Arabidopsis thaliana 1.4e-41

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029827
        (187 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2156657 - symbol:AT5G52390 "AT5G52390" species...   536  1.2e-51   1
TAIR|locus:2084495 - symbol:AT3G54040 "AT3G54040" species...   441  1.4e-41   1


>TAIR|locus:2156657 [details] [associations]
            symbol:AT5G52390 "AT5G52390" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002688 EMBL:AB019226
            EMBL:AY091116 EMBL:AY122980 IPI:IPI00517230 RefSeq:NP_200052.1
            UniGene:At.29617 EnsemblPlants:AT5G52390.1 GeneID:835315
            KEGG:ath:AT5G52390 TAIR:At5g52390 InParanoid:Q9FHC1 OMA:QEGNARR
            PhylomeDB:Q9FHC1 ProtClustDB:CLSN2685071 ArrayExpress:Q9FHC1
            Genevestigator:Q9FHC1 InterPro:IPR009489 Pfam:PF06521
            Uniprot:Q9FHC1
        Length = 195

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 101/153 (66%), Positives = 123/153 (80%)

Query:    11 IFAVVALAIAFCVQATLGE-VTCESLDQNACAFAVSASGKRCVLEKQVKRSGQETYTCKT 69
             +F    + +A   Q T G+ V CE+LD+N CAFAVS++GKRCVLEK +KRSG E YTC++
Sbjct:     6 VFVAFMILLAIYSQTTFGDDVKCENLDENTCAFAVSSTGKRCVLEKSMKRSGIEVYTCRS 65

Query:    70 SEIEAEKLNNWIETDQCIKSCGLDRKSLGISSDSLLESGFTQKLCSSPCYGSCPNIVDLY 129
             SEIEA K+ N IE+D+CIK+CGLDRK+LGISSD+LLES FT KLCS  C   CPN+VDLY
Sbjct:    66 SEIEANKVTNIIESDECIKACGLDRKALGISSDALLESQFTHKLCSVKCLNQCPNVVDLY 125

Query:   130 FNLAAGEGVFLPKLCEAQGKGARRRMSEIKSSG 162
             FNLAAGEGV+LPKLCE+Q   +RR MSEI+SSG
Sbjct:   126 FNLAAGEGVYLPKLCESQEGKSRRAMSEIRSSG 158


>TAIR|locus:2084495 [details] [associations]
            symbol:AT3G54040 "AT3G54040" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000041 "transition metal ion transport"
            evidence=RCA] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL132960
            ProtClustDB:CLSN2685071 InterPro:IPR009489 Pfam:PF06521
            EMBL:AY072404 EMBL:AY114703 IPI:IPI00533045 RefSeq:NP_190972.1
            UniGene:At.23194 PaxDb:Q9LCZ9 PRIDE:Q9LCZ9
            EnsemblPlants:AT3G54040.1 GeneID:824571 KEGG:ath:AT3G54040
            TAIR:At3g54040 eggNOG:NOG283079 HOGENOM:HOG000272679
            InParanoid:Q9LCZ9 OMA:RCILETA PhylomeDB:Q9LCZ9 ArrayExpress:Q9LCZ9
            Genevestigator:Q9LCZ9 Uniprot:Q9LCZ9
        Length = 183

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 86/169 (50%), Positives = 119/169 (70%)

Query:     5 SDSGLKIFAVVALAIAFCVQATLGE-VTCESLDQNACAFAVSASGKRCVLEKQVKRSGQE 63
             S S LK+   + L ++  + A +GE + CE+L  N C+F++SASGKRC+LE     +G+ 
Sbjct:     2 SFSSLKL--PIFLILSSLLHAAIGENIVCENLPTNMCSFSISASGKRCILET-ANVAGE- 57

Query:    64 TYTCKTSEIEAEKLNNWIETDQCIKSCGLDRKSLGISSDSLLESGFTQKLCSSPCYGSCP 123
              +TC+TS ++ E + N +ETD+C+ +CG+DRK++GISSDSL+E+GF  KLCSS C   CP
Sbjct:    58 -FTCRTSAVDVEGIVNHVETDECVSACGVDRKTVGISSDSLMEAGFAAKLCSSACLDYCP 116

Query:   124 NIVDLYFNLAAGEGVFLPKLCEAQGKGARRRMSEIKSSGYVAPAPLKSV 172
             NI+DLYFNLAAGEG FLP LC+AQ    +R M E  SSG  AP P+  +
Sbjct:   117 NILDLYFNLAAGEGAFLPDLCDAQRMNPQRSMMEFISSG-AAPGPVSEI 164


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      187       172   0.00093  108 3  11 22  0.40    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.74u 0.26s 17.00t   Elapsed:  00:00:01
  Total cpu time:  16.74u 0.26s 17.00t   Elapsed:  00:00:01
  Start:  Thu May  9 20:01:21 2013   End:  Thu May  9 20:01:22 2013

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