BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029827
         (187 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JFE|X Chain X, The Crystal Structure Of Human Cytosolic Beta-Glucosidase
          Length = 469

 Score = 31.6 bits (70), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 45  SASGK-RCVLEKQVKRSGQETYTCKTSEIEAEKLNNWIETDQCIKSCGLDRKSLGISSDS 103
            A GK  CV +    + G+  +  +T ++       W E  +CIK  GL      +S   
Sbjct: 23  DADGKGPCVWDTFTHQGGERVFKNQTGDVACGSYTLWEEDLKCIKQLGLTHYRFSLSWSR 82

Query: 104 LLESGFT 110
           LL  G T
Sbjct: 83  LLPDGTT 89


>pdb|2ZOX|A Chain A, Crystal Structure Of The Covalent Intermediate Of Human
           Cytosolic Beta-Glucosidase
 pdb|3VKK|A Chain A, Crystal Structure Of The Covalent Intermediate Of Human
           Cytosolic Beta-Glucosidase-Mannose Complex
          Length = 469

 Score = 31.6 bits (70), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 45  SASGK-RCVLEKQVKRSGQETYTCKTSEIEAEKLNNWIETDQCIKSCGLDRKSLGISSDS 103
            A GK  CV +    + G+  +  +T ++       W E  +CIK  GL      +S   
Sbjct: 23  DADGKGPCVWDTFTHQGGERVFKNQTGDVACGSYTLWEEDLKCIKQLGLTHYRFSLSWSR 82

Query: 104 LLESGFT 110
           LL  G T
Sbjct: 83  LLPDGTT 89


>pdb|2E9L|A Chain A, Crystal Structure Of Human Cytosolic Neutral
           Beta-Glycosylceramidase (Klotho-Related Prote:klrp)
           Complex With Glucose And Fatty Acids
 pdb|2E9M|A Chain A, Crystal Structure Of Human Cytosolic Neutral Beta-
           Glycosylceramidase (Klotho-Related Prote:klrp) Complex
           With Galactose And Fatty Acids
          Length = 469

 Score = 31.6 bits (70), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 45  SASGK-RCVLEKQVKRSGQETYTCKTSEIEAEKLNNWIETDQCIKSCGLDRKSLGISSDS 103
            A GK  CV +    + G+  +  +T ++       W E  +CIK  GL      +S   
Sbjct: 23  DADGKGPCVWDTFTHQGGERVFKNQTGDVACGSYTLWEEDLKCIKQLGLTHYRFSLSWSR 82

Query: 104 LLESGFT 110
           LL  G T
Sbjct: 83  LLPDGTT 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.130    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,561,520
Number of Sequences: 62578
Number of extensions: 166854
Number of successful extensions: 346
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 3
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)