BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029827
         (187 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P97265|GBA3_CAVPO Cytosolic beta-glucosidase OS=Cavia porcellus GN=Gba3 PE=1 SV=1
          Length = 469

 Score = 32.7 bits (73), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 51  CVLEKQVKRSGQETYTCKTSEIEAEKLNNWIETDQCIKSCGLDRKSLGISSDSLLESGFT 110
           CV +    + G+  +  +T ++       W E  +CIK  GL      IS   LL  G T
Sbjct: 30  CVWDTFTHQGGERVFKNQTGDVACGSYTLWEEDLKCIKQLGLTHYRFSISWSRLLPDGTT 89


>sp|Q9H227|GBA3_HUMAN Cytosolic beta-glucosidase OS=Homo sapiens GN=GBA3 PE=1 SV=2
          Length = 469

 Score = 32.0 bits (71), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 45  SASGK-RCVLEKQVKRSGQETYTCKTSEIEAEKLNNWIETDQCIKSCGLDRKSLGISSDS 103
            A GK  CV +    + G+  +  +T ++       W E  +CIK  GL      +S   
Sbjct: 23  DADGKGPCVWDTFTHQGGERVFKNQTGDVACGSYTLWEEDLKCIKQLGLTHYRFSLSWSR 82

Query: 104 LLESGFT 110
           LL  G T
Sbjct: 83  LLPDGTT 89


>sp|Q5RF65|GBA3_PONAB Cytosolic beta-glucosidase OS=Pongo abelii GN=GBA3 PE=2 SV=1
          Length = 469

 Score = 31.6 bits (70), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 45  SASGK-RCVLEKQVKRSGQETYTCKTSEIEAEKLNNWIETDQCIKSCGLDRKSLGISSDS 103
            A GK  CV +    + G+  +  +T ++       W E  +CIK  GL      +S   
Sbjct: 23  DADGKGPCVWDTFTHQGGERVFKNQTGDVACGSYTLWEEDLKCIKQLGLTHYRFSLSWSR 82

Query: 104 LLESGFT 110
           LL  G T
Sbjct: 83  LLPDGTT 89


>sp|P53551|H1_YEAST Histone H1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=HHO1 PE=1 SV=1
          Length = 258

 Score = 31.2 bits (69), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 117 PCYGSCPNIVDLYFNLAAGEGVFLPKLCEAQG-----KGARRRMSEIKSSGYVAPAP 168
           P  GS  N  DLYFN A  +GV      + +G     K A+++  E+K    V+P P
Sbjct: 78  PIVGSASNF-DLYFNNAIKKGVEAGDFEQPKGPAGAVKLAKKKSPEVKKEKEVSPKP 133


>sp|Q55FT1|DPYD_DICDI Dihydropyrimidine dehydrogenase [NADP(+)] OS=Dictyostelium
           discoideum GN=pyd1 PE=2 SV=1
          Length = 1009

 Score = 31.2 bits (69), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 66  TCKTSEIEAEKLNNWIETDQCIKSCGLDRKSLGISSDSLLESG--FTQKLC----SSPCY 119
           T K + +  +   NW   D C K C L      +   +L E G  F    C     +PC 
Sbjct: 28  TFKPTIVSKKDKENWARLDHCKKGCELKNDFEDVKPTTLTERGALFESARCLKCADAPCQ 87

Query: 120 GSCPNIVDL 128
             CP  +D+
Sbjct: 88  KGCPTQLDI 96


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.130    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,592,399
Number of Sequences: 539616
Number of extensions: 2456853
Number of successful extensions: 5822
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5816
Number of HSP's gapped (non-prelim): 8
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)