Query 029827
Match_columns 187
No_of_seqs 39 out of 41
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 04:17:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06521 PAR1: PAR1 protein; 100.0 6.8E-92 1.5E-96 571.8 10.4 155 29-183 1-158 (158)
2 PHA00442 host recBCD nuclease 51.3 11 0.00025 27.4 1.8 14 81-94 29-42 (59)
3 PF07172 GRP: Glycine rich pro 49.1 17 0.00038 27.6 2.6 11 3-14 1-11 (95)
4 TIGR03731 lantibio_gallid lant 33.4 19 0.00042 25.1 0.7 27 93-119 9-36 (48)
5 PF12798 Fer4_3: 4Fe-4S bindin 21.5 40 0.00086 18.1 0.4 9 116-124 5-13 (15)
6 PF13749 HATPase_c_4: ATP-depe 19.2 20 0.00043 25.7 -1.4 40 116-166 37-76 (89)
7 cd01222 PH_clg Clg (common-sit 18.9 2.3E+02 0.005 21.4 4.2 19 30-48 50-68 (97)
8 PF02363 C_tripleX: Cysteine r 17.9 49 0.0011 17.7 0.3 12 113-124 2-13 (17)
9 PF11020 DUF2610: Domain of un 17.0 68 0.0015 24.8 1.0 18 130-147 58-75 (82)
10 cd03066 PDI_b_Calsequestrin_mi 16.4 1.2E+02 0.0026 21.8 2.1 45 38-84 47-100 (102)
No 1
>PF06521 PAR1: PAR1 protein; InterPro: IPR009489 This family consists of several plant specific PAR1 proteins from Nicotiana tabacum (Common tobacco) and Arabidopsis thaliana (Mouse-ear cress). The function of this family is unknown.
Probab=100.00 E-value=6.8e-92 Score=571.76 Aligned_cols=155 Identities=67% Similarity=1.157 Sum_probs=150.5
Q ss_pred ceeecCCCcccceeeeccCCCceeeeeecccCCceeeEeehhHHHHHHhhhhhhhhHHHHhhCCCcceeccCchhhhccc
Q 029827 29 EVTCESLDQNACAFAVSASGKRCVLEKQVKRSGQETYTCKTSEIEAEKLNNWIETDQCIKSCGLDRKSLGISSDSLLESG 108 (187)
Q Consensus 29 ~i~CE~Lp~e~CAFaVSSsGkRCvLEk~~~~~g~~~y~CqTSev~ae~~~~~IEtDeCv~ACGvdR~svGiSsDslle~~ 108 (187)
+|+|||||+|+|||||||+||||||||++++||+++||||||||+|||+++||||||||+||||||||||||||+|+|++
T Consensus 1 ~i~CE~Lp~e~CAFaVsssG~RCvLEk~~~~~g~~~y~C~TSev~ae~~~~~IEtDeCv~ACGvdR~svGiSsDslle~~ 80 (158)
T PF06521_consen 1 EIVCEDLPAEVCAFAVSSSGKRCVLEKSVKRDGEEEYQCQTSEVMAEKLKEWIETDECVKACGVDRMSVGISSDSLLEPR 80 (158)
T ss_pred CcccccCChhhceeeeecCCcceEEeeccccCCceEEEecchHHHHHHHHhhhhHHHHHHHhCcchhhccccHHHhhccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhhhccCCchhhhhhhhccccCCCchHHHHhhcCCcchhhhhhhhcccccCCCccch---hhhcccCCCCC
Q 029827 109 FTQKLCSSPCYGSCPNIVDLYFNLAAGEGVFLPKLCEAQGKGARRRMSEIKSSGYVAPAPLKSV---AYLAAPLSAPP 183 (187)
Q Consensus 109 Ft~kLCS~~C~~~CPNIVDLY~nLAAGEGv~LP~LCe~q~~~~rR~m~E~~Ssg~~ap~pv~~v---~~~~~Pa~aP~ 183 (187)
||+|||||+||++||||||||||||||||||||+||++||+|+||+|+|++|+|++||||++.+ ++.++||+||+
T Consensus 81 f~~kLCS~~C~~~CPNIVDLY~nLAAGEGv~LP~LCe~q~~~~rR~m~e~~Ssg~~ap~p~~~v~~~~~~~aPA~aP~ 158 (158)
T PF06521_consen 81 FTSKLCSPACYNNCPNIVDLYFNLAAGEGVYLPELCEAQRGNPRRAMAEIKSSGIAAPGPVSSVSPVDITIAPAPAPA 158 (158)
T ss_pred hhhhhcCHHHHhHCccHHHHHHHhhhccCCchHHHHHhcCCccchhhhhccccccCCCCCccccChhhhccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999997555 57799999985
No 2
>PHA00442 host recBCD nuclease inhibitor
Probab=51.26 E-value=11 Score=27.38 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=10.7
Q ss_pred hhhhHHHHhhCCCc
Q 029827 81 IETDQCIKSCGLDR 94 (187)
Q Consensus 81 IEtDeCv~ACGvdR 94 (187)
.|.=+|.+|||||-
T Consensus 29 ~~~L~~Lea~GVDN 42 (59)
T PHA00442 29 NEFLKALRACGVDN 42 (59)
T ss_pred hHHHHHHHHcCCcc
Confidence 34447999999994
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=49.13 E-value=17 Score=27.64 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=5.4
Q ss_pred ccccchhHHHHH
Q 029827 3 MASDSGLKIFAV 14 (187)
Q Consensus 3 Mas~~~~~~l~~ 14 (187)
|||. .+..|.|
T Consensus 1 MaSK-~~llL~l 11 (95)
T PF07172_consen 1 MASK-AFLLLGL 11 (95)
T ss_pred Cchh-HHHHHHH
Confidence 7854 3444443
No 4
>TIGR03731 lantibio_gallid lantibiotic, gallidermin/nisin family. Members of this family are lantibiotic precursors in the family that includes gallidermin, nisin, mutacin, epidermin, and streptin.
Probab=33.42 E-value=19 Score=25.12 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=20.9
Q ss_pred CcceeccCchhhhccccccc-cCChhhh
Q 029827 93 DRKSLGISSDSLLESGFTQK-LCSSPCY 119 (187)
Q Consensus 93 dR~svGiSsDslle~~Ft~k-LCS~~C~ 119 (187)
|-..|-=+.|+-.+++++++ ||.|.|-
T Consensus 9 d~~~v~~s~Ds~~~pritS~SlCtPGC~ 36 (48)
T TIGR03731 9 DVTAVVKSNDSDVDPRITSKSLCTPGCA 36 (48)
T ss_pred eeeeeecccCCCCCcceeeeeccCCCcc
Confidence 33445557899999999876 8999995
No 5
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=21.51 E-value=40 Score=18.08 Aligned_cols=9 Identities=33% Similarity=1.069 Sum_probs=7.0
Q ss_pred hhhhccCCc
Q 029827 116 SPCYGSCPN 124 (187)
Q Consensus 116 ~~C~~~CPN 124 (187)
+.|.+.||+
T Consensus 5 ~~C~~~Cp~ 13 (15)
T PF12798_consen 5 GACVEVCPT 13 (15)
T ss_pred hHHHHHhcC
Confidence 678888885
No 6
>PF13749 HATPase_c_4: ATP-dependent DNA helicase recG C-terminal; PDB: 3LMM_D.
Probab=19.18 E-value=20 Score=25.73 Aligned_cols=40 Identities=30% Similarity=0.483 Sum_probs=26.4
Q ss_pred hhhhccCCchhhhhhhhccccCCCchHHHHhhcCCcchhhhhhhhcccccC
Q 029827 116 SPCYGSCPNIVDLYFNLAAGEGVFLPKLCEAQGKGARRRMSEIKSSGYVAP 166 (187)
Q Consensus 116 ~~C~~~CPNIVDLY~nLAAGEGv~LP~LCe~q~~~~rR~m~E~~Ssg~~ap 166 (187)
|.++| |.|.+++..+ .++|.++..-+|...+.+..|...|
T Consensus 37 s~~RN--p~ia~~~~~~---------g~~e~~GsGi~ri~~~~~~~~~~~P 76 (89)
T PF13749_consen 37 SRPRN--PLIAEIFRRL---------GYVERFGSGIRRIFDAMKEAGLPPP 76 (89)
T ss_dssp ---S---HHHHHHHHHT---------T-S-SSHHHHHHHHHHHHHTTS---
T ss_pred CcCCC--HHHHHHHHHh---------CchhccCcHHHHHHHHHHHcCCCCC
Confidence 55555 8999999998 4678888888888888888885444
No 7
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=18.86 E-value=2.3e+02 Score=21.43 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=14.9
Q ss_pred eeecCCCcccceeeeccCC
Q 029827 30 VTCESLDQNACAFAVSASG 48 (187)
Q Consensus 30 i~CE~Lp~e~CAFaVSSsG 48 (187)
...|+.+.|.|+|+|.+..
T Consensus 50 ~i~e~~~~d~~~F~v~~~~ 68 (97)
T cd01222 50 MLVEHLPGEPLCFRVIPFD 68 (97)
T ss_pred EEecCCCCCCcEEEEEecC
Confidence 4567888889999996653
No 8
>PF02363 C_tripleX: Cysteine rich repeat; InterPro: IPR003341 This signature describes a cysteine repeat C-X3-C-X3-C the function of which is unknown as is the function of the proteins in which they occur.
Probab=17.87 E-value=49 Score=17.68 Aligned_cols=12 Identities=42% Similarity=0.924 Sum_probs=8.0
Q ss_pred cCChhhhccCCc
Q 029827 113 LCSSPCYGSCPN 124 (187)
Q Consensus 113 LCS~~C~~~CPN 124 (187)
.|.|.|...|-|
T Consensus 2 ~C~p~C~~~C~~ 13 (17)
T PF02363_consen 2 QCVPQCEPSCEN 13 (17)
T ss_pred cchhhccCcccc
Confidence 466777777755
No 9
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=16.99 E-value=68 Score=24.75 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=16.3
Q ss_pred hhhccccCCCchHHHHhh
Q 029827 130 FNLAAGEGVFLPKLCEAQ 147 (187)
Q Consensus 130 ~nLAAGEGv~LP~LCe~q 147 (187)
+.||.+-||.+++||..-
T Consensus 58 ~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 58 YKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 689999999999999864
No 10
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=16.44 E-value=1.2e+02 Score=21.83 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=25.4
Q ss_pred ccceeeeccCC---------CceeeeeecccCCceeeEeehhHHHHHHhhhhhhhh
Q 029827 38 NACAFAVSASG---------KRCVLEKQVKRSGQETYTCKTSEIEAEKLNNWIETD 84 (187)
Q Consensus 38 e~CAFaVSSsG---------kRCvLEk~~~~~g~~~y~CqTSev~ae~~~~~IEtD 84 (187)
+.|.|++.+.- .+.+.=......+.+.|. ......+.|++||.+.
T Consensus 47 ~d~~F~~~~~~~~~~~~~~~~~~i~l~~~~~e~~~~y~--~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 47 PYIKFFATFDSKVAKKLGLKMNEVDFYEPFMEEPVTIP--DKPYSEEELVDFVEEH 100 (102)
T ss_pred cCCEEEEECcHHHHHHcCCCCCcEEEeCCCCCCCcccC--CCCCCHHHHHHHHHHh
Confidence 67899887642 122111111134445564 4455778899999764
Done!