Query 029827
Match_columns 187
No_of_seqs 39 out of 41
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 06:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1waa_A Titin; metal binding pr 18.8 76 0.0026 20.8 2.5 30 42-71 51-81 (93)
2 2fi0_A Conserved domain protei 18.0 42 0.0014 23.0 1.1 42 123-164 23-76 (81)
3 1xiw_B T-cell surface glycopro 17.4 80 0.0027 21.8 2.4 28 47-75 33-60 (79)
4 2lu7_A Obscurin-like protein 1 15.9 1.4E+02 0.0048 19.3 3.3 28 42-69 42-70 (84)
5 3knb_A Titin; IG-like, titin, 15.6 1.2E+02 0.004 19.9 2.8 32 39-70 51-83 (100)
6 2lvc_A Obscurin-like protein 1 15.6 82 0.0028 20.8 2.0 28 42-69 52-80 (91)
7 2k1m_A Myosin-binding protein 13.6 1.2E+02 0.0042 19.1 2.4 29 41-69 53-82 (95)
8 2edh_A Obscurin; structural ge 12.8 1.7E+02 0.0057 18.9 2.9 29 41-69 63-92 (113)
9 1x44_A Myosin-binding protein 11.0 2.1E+02 0.0071 18.1 2.9 29 42-70 55-84 (103)
10 2yuz_A Myosin-binding protein 10.6 1.8E+02 0.0062 19.0 2.6 30 42-71 52-82 (100)
No 1
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=18.82 E-value=76 Score=20.76 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=20.6
Q ss_pred eeeccCCCceeee-eecccCCceeeEeehhH
Q 029827 42 FAVSASGKRCVLE-KQVKRSGQETYTCKTSE 71 (187)
Q Consensus 42 FaVSSsGkRCvLE-k~~~~~g~~~y~CqTSe 71 (187)
|.|...|++..|. +.+..+....|+|+.+.
T Consensus 51 ~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n 81 (93)
T 1waa_A 51 CEIIEDGKKHILILHNCQLGMTGEVSFQAAN 81 (93)
T ss_dssp EEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred EEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence 4566677766554 44566778999998653
No 2
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=17.99 E-value=42 Score=23.03 Aligned_cols=42 Identities=19% Similarity=0.442 Sum_probs=33.4
Q ss_pred Cchhhhhhhhc------------cccCCCchHHHHhhcCCcchhhhhhhhcccc
Q 029827 123 PNIVDLYFNLA------------AGEGVFLPKLCEAQGKGARRRMSEIKSSGYV 164 (187)
Q Consensus 123 PNIVDLY~nLA------------AGEGv~LP~LCe~q~~~~rR~m~E~~Ssg~~ 164 (187)
|.+++++.++- .|-+..|++-|..++-+....+.+|...|+.
T Consensus 23 P~~~~vl~~~G~~~l~~p~~~~~~g~~~TL~~aa~~~gid~d~l~~~L~~~g~~ 76 (81)
T 2fi0_A 23 PEVLEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGYE 76 (81)
T ss_dssp GGGHHHHTTTTCGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCccccCcHHHhhhcccCcHHHHHHHcCCCHHHHHHHHHHcCCE
Confidence 55666655554 3567899999999999999999999998864
No 3
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=17.37 E-value=80 Score=21.77 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=18.1
Q ss_pred CCCceeeeeecccCCceeeEeehhHHHHH
Q 029827 47 SGKRCVLEKQVKRSGQETYTCKTSEIEAE 75 (187)
Q Consensus 47 sGkRCvLEk~~~~~g~~~y~CqTSev~ae 75 (187)
..++=.|.+ ..+|....|+|+.++-...
T Consensus 33 ~~~tL~L~~-~~~d~sG~Y~C~~~~~~~~ 60 (79)
T 1xiw_B 33 DITRLDLGK-RILDPRGIYRCNGTDIYKD 60 (79)
T ss_dssp GGTEEEEEE-GGGCCEEEEEEC-------
T ss_pred cCCeEEecc-CcCCCCeEEEecCCCCCCc
Confidence 468889988 7778999999998876654
No 4
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=15.88 E-value=1.4e+02 Score=19.32 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=20.1
Q ss_pred eeeccCCCceeee-eecccCCceeeEeeh
Q 029827 42 FAVSASGKRCVLE-KQVKRSGQETYTCKT 69 (187)
Q Consensus 42 FaVSSsGkRCvLE-k~~~~~g~~~y~CqT 69 (187)
+-+...|.+..|. +.+.++....|+|+-
T Consensus 42 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 70 (84)
T 2lu7_A 42 VQLEQAGARQVLRVQGARSGDAGEYLCDA 70 (84)
T ss_dssp EEEEECSSCEEEEESSCSSTTCEEEEEEC
T ss_pred EEEeecCCeEEEEecCCCCcccEEEEEEE
Confidence 5566777777665 456677889999974
No 5
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=15.64 E-value=1.2e+02 Score=19.95 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=22.6
Q ss_pred cceeeeccCCCceeee-eecccCCceeeEeehh
Q 029827 39 ACAFAVSASGKRCVLE-KQVKRSGQETYTCKTS 70 (187)
Q Consensus 39 ~CAFaVSSsGkRCvLE-k~~~~~g~~~y~CqTS 70 (187)
.--|.+...+....|. +.+.++....|+|+-+
T Consensus 51 ~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 83 (100)
T 3knb_A 51 QGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG 83 (100)
T ss_dssp GGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred cceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence 3457777888877776 4455667789999754
No 6
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=15.57 E-value=82 Score=20.82 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=19.3
Q ss_pred eeeccCCCceeee-eecccCCceeeEeeh
Q 029827 42 FAVSASGKRCVLE-KQVKRSGQETYTCKT 69 (187)
Q Consensus 42 FaVSSsGkRCvLE-k~~~~~g~~~y~CqT 69 (187)
|-+...|.+..|. +.+..+....|+|+-
T Consensus 52 ~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a 80 (91)
T 2lvc_A 52 VVLENEGPHRRLVLPATQPSDGGEFQCVA 80 (91)
T ss_dssp CEEEEETTEEEEEESSCCGGGCSEEEEEC
T ss_pred eeEEecCCeEEEEeCCCChhhcEEEEEEE
Confidence 4566677766554 455666778999974
No 7
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=13.64 E-value=1.2e+02 Score=19.07 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=19.5
Q ss_pred eeeeccCCCceeee-eecccCCceeeEeeh
Q 029827 41 AFAVSASGKRCVLE-KQVKRSGQETYTCKT 69 (187)
Q Consensus 41 AFaVSSsGkRCvLE-k~~~~~g~~~y~CqT 69 (187)
-|.++..|.+..|. +.+..+....|+|+.
T Consensus 53 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (95)
T 2k1m_A 53 KYGLATEGTRHTLTVREVGPADQGSYAVIA 82 (95)
T ss_dssp TCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred cEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence 35566667666554 345566778999986
No 8
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=12.80 E-value=1.7e+02 Score=18.89 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=19.3
Q ss_pred eeeeccCCCceeee-eecccCCceeeEeeh
Q 029827 41 AFAVSASGKRCVLE-KQVKRSGQETYTCKT 69 (187)
Q Consensus 41 AFaVSSsGkRCvLE-k~~~~~g~~~y~CqT 69 (187)
-|.+...|....|. +.+..+....|+|+-
T Consensus 63 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 92 (113)
T 2edh_A 63 RHSLRQDGARCELQIRGLVAEDAGEYLCMC 92 (113)
T ss_dssp SEEEEEETTEEEEEECSCCSTTCEEEEEEE
T ss_pred cEEEEECCCEEEEEECCCChhhCEEEEEEe
Confidence 35566666655554 445667788999986
No 9
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=11.01 E-value=2.1e+02 Score=18.14 Aligned_cols=29 Identities=17% Similarity=0.452 Sum_probs=18.6
Q ss_pred eeeccCCCceeee-eecccCCceeeEeehh
Q 029827 42 FAVSASGKRCVLE-KQVKRSGQETYTCKTS 70 (187)
Q Consensus 42 FaVSSsGkRCvLE-k~~~~~g~~~y~CqTS 70 (187)
|.+...|....|. +.+..+....|+|+.+
T Consensus 55 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 84 (103)
T 1x44_A 55 YRIRVEGKKHILIIEGATKADAAEYSVMTT 84 (103)
T ss_dssp EEEEEETTEEEEEEEEECTTTCSEEEEEET
T ss_pred EEEEEcCCEEEEEECCCCcccCEEEEEEEC
Confidence 3555555555554 3455667789999865
No 10
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=10.60 E-value=1.8e+02 Score=18.99 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=19.5
Q ss_pred eeeccCCCceeee-eecccCCceeeEeehhH
Q 029827 42 FAVSASGKRCVLE-KQVKRSGQETYTCKTSE 71 (187)
Q Consensus 42 FaVSSsGkRCvLE-k~~~~~g~~~y~CqTSe 71 (187)
+.|...|..+.|. +.+..+....|+|+-+.
T Consensus 52 ~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 82 (100)
T 2yuz_A 52 LKVVQKGRIHKLVIANALTEDEGDYVFAPDA 82 (100)
T ss_dssp EEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred EEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence 4456667666554 34556678899998654
Done!