Query 029827
Match_columns 187
No_of_seqs 39 out of 41
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 06:21:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029827.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029827hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1srka_ g.37.1.1 (A:) Zinc fin 21.8 12 0.00088 21.5 0.6 11 59-69 2-12 (35)
2 d1wmta_ g.3.7.2 (A:) Istx {Sco 18.3 12 0.00088 22.8 0.0 7 117-123 34-40 (41)
3 d1pjqa3 e.37.1.1 (A:114-215) S 18.0 34 0.0025 22.8 2.4 18 42-59 11-28 (102)
4 d2ct1a2 g.37.1.1 (A:8-43) Tran 14.2 22 0.0016 20.1 0.5 9 60-68 4-12 (36)
5 d1ncsa_ g.37.1.1 (A:) SWI5 zin 13.4 18 0.0013 21.7 -0.1 16 53-68 7-22 (47)
6 d2fmpa1 a.60.6.1 (A:10-91) DNA 12.8 23 0.0017 22.9 0.3 17 71-87 58-74 (82)
7 d1x6ha2 g.37.1.1 (A:8-43) Tran 12.6 29 0.0021 19.5 0.7 9 60-68 4-12 (36)
8 d1j0wa_ b.55.1.2 (A:) Downstre 11.5 53 0.0038 22.5 1.9 24 40-71 58-81 (99)
9 d1p7aa_ g.37.1.1 (A:) Kruppel- 11.4 21 0.0015 20.2 -0.2 10 59-68 6-15 (37)
10 d2cqva1 b.1.1.4 (A:8-108) Telo 11.1 96 0.007 18.8 3.0 30 42-71 47-77 (101)
No 1
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.84 E-value=12 Score=21.51 Aligned_cols=11 Identities=27% Similarity=0.887 Sum_probs=8.8
Q ss_pred cCCceeeEeeh
Q 029827 59 RSGQETYTCKT 69 (187)
Q Consensus 59 ~~g~~~y~CqT 69 (187)
-+|+.+|+|+.
T Consensus 2 ~TGekPy~C~~ 12 (35)
T d1srka_ 2 SSGKRPFVCRI 12 (35)
T ss_dssp CSCCSCEECSS
T ss_pred CCCCccccCCC
Confidence 47999999963
No 2
>d1wmta_ g.3.7.2 (A:) Istx {Scorpion (Opisthacanthus madagascariensis) [TaxId: 167108]}
Probab=18.32 E-value=12 Score=22.80 Aligned_cols=7 Identities=57% Similarity=1.844 Sum_probs=6.0
Q ss_pred hhhccCC
Q 029827 117 PCYGSCP 123 (187)
Q Consensus 117 ~C~~~CP 123 (187)
.||++||
T Consensus 34 ncynncp 40 (41)
T d1wmta_ 34 NCYNNCP 40 (41)
T ss_dssp ECCCCCC
T ss_pred ccccCCC
Confidence 5899998
No 3
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2 and 3 {Salmonella typhimurium [TaxId: 90371]}
Probab=18.01 E-value=34 Score=22.77 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=11.2
Q ss_pred eeeccCCCceeeeeeccc
Q 029827 42 FAVSASGKRCVLEKQVKR 59 (187)
Q Consensus 42 FaVSSsGkRCvLEk~~~~ 59 (187)
.||||.|+-.+|=+++++
T Consensus 11 iAISTgG~sP~lar~lR~ 28 (102)
T d1pjqa3 11 VAVSSGGTSPVLARLLRE 28 (102)
T ss_dssp EEEECTTSCHHHHHHHHH
T ss_pred EEEeCCCcChHHHHHHHH
Confidence 688888875555444433
No 4
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.15 E-value=22 Score=20.13 Aligned_cols=9 Identities=44% Similarity=1.069 Sum_probs=7.6
Q ss_pred CCceeeEee
Q 029827 60 SGQETYTCK 68 (187)
Q Consensus 60 ~g~~~y~Cq 68 (187)
+||.+|+|.
T Consensus 4 TgekP~~C~ 12 (36)
T d2ct1a2 4 SGEKPYECY 12 (36)
T ss_dssp SCCCSEECT
T ss_pred CCCCCEeCC
Confidence 689999995
No 5
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.42 E-value=18 Score=21.71 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=12.9
Q ss_pred eeeecccCCceeeEee
Q 029827 53 LEKQVKRSGQETYTCK 68 (187)
Q Consensus 53 LEk~~~~~g~~~y~Cq 68 (187)
|.+++..+|+.+|+|.
T Consensus 7 l~~h~~h~gekpy~C~ 22 (47)
T d1ncsa_ 7 IDKYVKEMPDKTFECL 22 (47)
T ss_dssp GGGSCEEETTTEEECC
T ss_pred hcchhhccCCCCeECC
Confidence 5567778899999995
No 6
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.79 E-value=23 Score=22.90 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.2
Q ss_pred HHHHHHhhhhhhhhHHH
Q 029827 71 EIEAEKLNNWIETDQCI 87 (187)
Q Consensus 71 ev~ae~~~~~IEtDeCv 87 (187)
.-+++++.||+||..|-
T Consensus 58 k~ia~kI~E~~~TG~~~ 74 (82)
T d2fmpa1 58 TKIAEKIDEFLATGKLR 74 (82)
T ss_dssp HHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHhCChH
Confidence 36889999999998764
No 7
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.61 E-value=29 Score=19.53 Aligned_cols=9 Identities=33% Similarity=1.150 Sum_probs=7.6
Q ss_pred CCceeeEee
Q 029827 60 SGQETYTCK 68 (187)
Q Consensus 60 ~g~~~y~Cq 68 (187)
+|+.+|+|.
T Consensus 4 TgekPy~C~ 12 (36)
T d1x6ha2 4 TGEKPYACS 12 (36)
T ss_dssp CCCCCEECS
T ss_pred CCCCCEECC
Confidence 688999995
No 8
>d1j0wa_ b.55.1.2 (A:) Downstream of tyrosine kinase 5, Dok-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.54 E-value=53 Score=22.54 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=16.4
Q ss_pred ceeeeccCCCceeeeeecccCCceeeEeehhH
Q 029827 40 CAFAVSASGKRCVLEKQVKRSGQETYTCKTSE 71 (187)
Q Consensus 40 CAFaVSSsGkRCvLEk~~~~~g~~~y~CqTSe 71 (187)
..|++=. |+|| .+|+..|.-+|.+
T Consensus 58 ~~F~fE~-Gr~c-------~~G~G~~~f~t~~ 81 (99)
T d1j0wa_ 58 TWFTFEA-GRMC-------ETGEGLFIFQTRD 81 (99)
T ss_dssp SEEEEEE-CSSS-------SSCSEEEEEECSC
T ss_pred CEEEEEc-cCcC-------CCCCeEEEEEcCC
Confidence 3455543 8888 4678888877775
No 9
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.41 E-value=21 Score=20.20 Aligned_cols=10 Identities=20% Similarity=0.776 Sum_probs=8.2
Q ss_pred cCCceeeEee
Q 029827 59 RSGQETYTCK 68 (187)
Q Consensus 59 ~~g~~~y~Cq 68 (187)
-+|+.+|+|.
T Consensus 6 HTgeKPy~C~ 15 (37)
T d1p7aa_ 6 STGIKPFQCP 15 (37)
T ss_dssp TCCSSSBCCT
T ss_pred cCCccCeEeC
Confidence 4789999995
No 10
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.13 E-value=96 Score=18.82 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=19.9
Q ss_pred eeeccCCCceeee-eecccCCceeeEeehhH
Q 029827 42 FAVSASGKRCVLE-KQVKRSGQETYTCKTSE 71 (187)
Q Consensus 42 FaVSSsGkRCvLE-k~~~~~g~~~y~CqTSe 71 (187)
+-+.+.+....|+ +.+.++....|+|+-+.
T Consensus 47 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 77 (101)
T d2cqva1 47 MKVENSENGSKLTILAARQEHCGCYTLLVEN 77 (101)
T ss_dssp EEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred EEEEEecceeEEEEeeCCcccCEEEEEEEEE
Confidence 3455566666665 45566777999998653
Done!