BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029828
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DGW|C Chain C, Crystal Structure Of The Sf3a Splicing Factor Complex Of
U2 Snrnp
Length = 231
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 16/65 (24%)
Query: 13 KRYQYLMFAAEPYEIIAFKVPSTEI---------------DKSTPKFFSHWDPDSKMFTL 57
K ++L+ A EP+E IA ++P EI D+ K + WD SK++ +
Sbjct: 159 KGKKFLVIAYEPFENIAIELPPNEILFSENNDXDNNNDGVDELNKKC-TFWDAISKLYYV 217
Query: 58 QLYFK 62
Q +FK
Sbjct: 218 QFFFK 222
>pdb|2ZFN|A Chain A, Self-Acetylation Mediated Histone H3 Lysine 56
Acetylation By Rtt109
Length = 460
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 53
++ F V P ++++YL + P E A P+ + DK PK FFS +
Sbjct: 27 LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 85
Query: 54 MFTLQLY 60
F+L++Y
Sbjct: 86 FFSLEVY 92
>pdb|3CZ7|A Chain A, Molecular Basis For The Autoregulation Of The Protein
Acetyl Transferase Rtt109
Length = 364
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 53
++ F V P ++++YL + P E A P+ + DK PK FFS +
Sbjct: 3 LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 61
Query: 54 MFTLQLY 60
F+L++Y
Sbjct: 62 FFSLEVY 68
>pdb|3QM0|A Chain A, Crystal Structure Of Rtt109-Ac-Coa Complex
Length = 388
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 53
++ F V P ++++YL + P E A P+ + DK PK FFS +
Sbjct: 5 LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 63
Query: 54 MFTLQLY 60
F+L++Y
Sbjct: 64 FFSLEVY 70
>pdb|2RIM|A Chain A, Crystal Structure Of Rtt109
Length = 457
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 53
++ F V P ++++YL + P E A P+ + DK PK FFS +
Sbjct: 24 LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 82
Query: 54 MFTLQLY 60
F+L++Y
Sbjct: 83 FFSLEVY 89
>pdb|3Q66|C Chain C, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In
Space Group P6122)
pdb|3Q68|C Chain C, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In
Space Group P212121)
Length = 442
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 53
++ F V P ++++YL + P E A P+ + DK PK FFS +
Sbjct: 9 LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 67
Query: 54 MFTLQLY 60
F+L++Y
Sbjct: 68 FFSLEVY 74
>pdb|3Q33|A Chain A, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
pdb|3Q35|A Chain A, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
Length = 438
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 53
++ F V P ++++YL + P E A P+ + DK PK FFS +
Sbjct: 5 LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 63
Query: 54 MFTLQLY 60
F+L++Y
Sbjct: 64 FFSLEVY 70
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 3 SFEQRVQPFDKRYQYLM------FAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFT 56
SF +PF Y+ ++ P+ + F +P E+ + PK + + + +
Sbjct: 168 SFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVEEFVLPKFEVQVTVPKIITILEEEMNVSV 227
Query: 57 LQLYFKSKPVEGN 69
LY KPV G+
Sbjct: 228 CGLYTYGKPVPGH 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,705,142
Number of Sequences: 62578
Number of extensions: 76381
Number of successful extensions: 100
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 8
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)