BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029828
         (187 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2
          Length = 464

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 52/62 (83%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +
Sbjct: 152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFH 211

Query: 61  FK 62
           FK
Sbjct: 212 FK 213


>sp|Q6AXT8|SF3A2_RAT Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2
           SV=1
          Length = 471

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 52/62 (83%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +
Sbjct: 152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFH 211

Query: 61  FK 62
           FK
Sbjct: 212 FK 213


>sp|A5PJN8|SF3A2_BOVIN Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1
          Length = 477

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 52/62 (83%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +
Sbjct: 152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFH 211

Query: 61  FK 62
           FK
Sbjct: 212 FK 213


>sp|Q54B65|SF3A2_DICDI Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2
           PE=3 SV=1
          Length = 215

 Score = 93.2 bits (230), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 53/65 (81%), Gaps = 4/65 (6%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKST---PKFFSHWDPDSKMFTL 57
           MS+FEQRV+  +K YQYL+FAAEPYE IAFK+P+ EID++T    KFF+HWD + K FTL
Sbjct: 151 MSAFEQRVEQPNKDYQYLLFAAEPYETIAFKIPNKEIDRTTGPDGKFFTHWDRN-KTFTL 209

Query: 58  QLYFK 62
           QLYFK
Sbjct: 210 QLYFK 214


>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=2 SV=2
          Length = 475

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 10/62 (16%)

Query: 1   MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60
           MS++EQR++P D+R+QYL+ AAEPYE IAFKVPS EIDK+  KF          F LQ +
Sbjct: 152 MSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKF----------FFLQFH 201

Query: 61  FK 62
           FK
Sbjct: 202 FK 203


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.138    0.459 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,261,916
Number of Sequences: 539616
Number of extensions: 7813603
Number of successful extensions: 219973
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3078
Number of HSP's successfully gapped in prelim test: 3446
Number of HSP's that attempted gapping in prelim test: 44596
Number of HSP's gapped (non-prelim): 58075
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)