Query 029828
Match_columns 187
No_of_seqs 131 out of 180
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 04:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0227 Splicing factor 3a, su 100.0 4.1E-33 8.9E-38 236.5 5.7 68 1-68 152-219 (222)
2 COG5246 PRP11 Splicing factor 99.9 2E-24 4.3E-29 183.3 4.7 63 1-65 158-220 (222)
3 PF09732 CactinC_cactus: Cactu 99.4 1.4E-13 3.1E-18 109.9 5.3 52 12-65 69-122 (125)
4 KOG1924 RhoA GTPase effector D 98.3 3.1E-06 6.6E-11 84.7 10.1 33 121-158 568-600 (1102)
5 KOG1924 RhoA GTPase effector D 98.2 5.2E-06 1.1E-10 83.1 8.3 50 93-142 547-601 (1102)
6 KOG3671 Actin regulatory prote 95.7 0.19 4.1E-06 49.0 12.2 39 49-87 285-324 (569)
7 KOG2370 Cactin [Signal transdu 95.6 0.0046 9.9E-08 59.9 0.9 44 19-65 575-620 (623)
8 KOG3671 Actin regulatory prote 91.9 6.1 0.00013 38.9 14.1 7 38-44 285-291 (569)
9 KOG0132 RNA polymerase II C-te 85.6 23 0.00051 36.7 13.6 15 43-57 500-514 (894)
10 PF08954 DUF1900: Domain of un 44.4 17 0.00036 29.3 2.0 23 35-57 5-27 (136)
11 COG0753 KatE Catalase [Inorgan 36.8 42 0.00092 32.9 3.8 58 12-69 169-233 (496)
12 PF11281 DUF3083: Protein of u 34.9 43 0.00092 31.2 3.3 29 38-66 243-271 (316)
13 KOG1923 Rac1 GTPase effector F 31.8 3.2E+02 0.007 28.7 9.1 12 51-62 241-252 (830)
14 PF14492 EFG_II: Elongation Fa 30.5 45 0.00098 23.6 2.2 24 37-60 28-51 (75)
15 KOG1296 Uncharacterized conser 30.3 74 0.0016 27.1 3.8 44 8-52 88-144 (161)
16 cd07691 Ig_CD3_gamma_delta Imm 30.1 60 0.0013 24.0 2.8 22 42-63 46-67 (69)
17 KOG0303 Actin-binding protein 29.5 45 0.00097 32.5 2.6 41 14-57 240-280 (472)
18 TIGR02909 spore_YkwD uncharact 23.2 72 0.0016 24.0 2.3 16 47-62 112-127 (127)
19 KOG4672 Uncharacterized conser 21.4 8.1E+02 0.017 24.3 10.1 9 82-90 305-313 (487)
20 cd03710 BipA_TypA_C BipA_TypA_ 21.4 1.1E+02 0.0024 21.4 2.8 13 23-35 1-13 (79)
21 PTZ00259 endonuclease G; Provi 21.0 71 0.0015 30.5 2.3 17 24-40 308-324 (434)
No 1
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=99.97 E-value=4.1e-33 Score=236.53 Aligned_cols=68 Identities=63% Similarity=1.055 Sum_probs=65.4
Q ss_pred CCccccccCCCCCCCcEEEEEeCCCceeeeecCCcccccCCCCceeeecCCCCeEEEEEeeecCCCCC
Q 029828 1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEG 68 (187)
Q Consensus 1 MSayEQrvE~pdk~~QYLLiAaEPYEtIAFKIPnrEIDk~egkfwt~WD~DtK~F~LQf~FK~~~~~~ 68 (187)
||+|||+||.+|++||||||||||||||||||||+|||++++|||||||+|||+|+||||||.++.+.
T Consensus 152 mssyeq~ve~~dk~~qyLvfaaePyE~Iafk~p~~Eid~se~Kf~t~wd~~tk~y~lqF~fk~~~~~~ 219 (222)
T KOG0227|consen 152 MSSYEQKVEPPDKSWQYLVFAAEPYENIAFKVPSREIDKSEGKFWTHWDAETKQYTLQFFFKQAEPEQ 219 (222)
T ss_pred hhhhHhhcCCccccceEEEEEeccccceeeecCchhhhhccCceeeeecCCCceEEEEEEecccCccC
Confidence 89999999999999999999999999999999999999999999999999999999999999876553
No 2
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=99.90 E-value=2e-24 Score=183.26 Aligned_cols=63 Identities=43% Similarity=0.837 Sum_probs=59.5
Q ss_pred CCccccccCCCCCCCcEEEEEeCCCceeeeecCCcccccCCCCceeeecCCCCeEEEEEeeecCC
Q 029828 1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKP 65 (187)
Q Consensus 1 MSayEQrvE~pdk~~QYLLiAaEPYEtIAFKIPnrEIDk~egkfwt~WD~DtK~F~LQf~FK~~~ 65 (187)
||+|||+||..|+++|||||||||||||||||+++|||..+ .|++||..||+|+|||||+.-.
T Consensus 158 vs~lEq~ve~~d~~f~yLV~a~ePyEnIafk~~~~ei~f~s--~~~~wDa~~~tYt~qFff~~a~ 220 (222)
T COG5246 158 VSSLEQNVEEYDESFRYLVFACEPYENIAFKFENKEIDFLS--IYEDWDAETGTYTLQFFFLEAG 220 (222)
T ss_pred hhhhhhcchhhcccceEEEEEeccccceeeecCCCccchhh--hcccccccCceEEEEEeeeccc
Confidence 79999999999999999999999999999999999999776 7789999999999999998654
No 3
>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.
Probab=99.43 E-value=1.4e-13 Score=109.85 Aligned_cols=52 Identities=33% Similarity=0.479 Sum_probs=47.3
Q ss_pred CCCCcEEEEE-eCCCceeeeecCCcccccCCC-CceeeecCCCCeEEEEEeeecCC
Q 029828 12 DKRYQYLMFA-AEPYEIIAFKVPSTEIDKSTP-KFFSHWDPDSKMFTLQLYFKSKP 65 (187)
Q Consensus 12 dk~~QYLLiA-aEPYEtIAFKIPnrEIDk~eg-kfwt~WD~DtK~F~LQf~FK~~~ 65 (187)
|++++||+|+ ++|||+|||||.|||+|++.+ .|+++||. ++|.|+|+||..+
T Consensus 69 ~~~~~~L~F~AgpPYeDIAFkIvnrEWd~s~k~Gfr~~Fd~--gilqL~F~FKr~~ 122 (125)
T PF09732_consen 69 NPDFCILRFHAGPPYEDIAFKIVNREWDYSHKRGFRCSFDR--GILQLYFNFKRYR 122 (125)
T ss_pred CCCEEEEEEeCCCCCcCEEEEEecCeeecCCCCCceEEeeC--CEEEEEEEEEhhh
Confidence 8999999994 699999999999999999988 68999986 6999999999754
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.32 E-value=3.1e-06 Score=84.68 Aligned_cols=33 Identities=42% Similarity=0.871 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029828 121 ANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRP 158 (187)
Q Consensus 121 ~~~ppp~pp~g~p~~ppppp~~~~~~~~f~~g~~~~~p 158 (187)
|++|+|+++.|+.++||||+.+ +|-.|.+++.+
T Consensus 568 G~PPpPppppg~~gppPPPpp~-----g~~Gg~ppPP~ 600 (1102)
T KOG1924|consen 568 GGPPPPPPPPGGGGPPPPPPPG-----GFLGGPPPPPP 600 (1102)
T ss_pred CCCCccCCCCCCCCCCCcCCCC-----CCCCCCCCCCC
Confidence 3444444444544444444444 34555555544
No 5
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.18 E-value=5.2e-06 Score=83.12 Aligned_cols=50 Identities=52% Similarity=1.189 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q 029828 93 PPGVSAGNAPRAPPPPMT----GTLPPPPPP-MANGPRPMPPGGAPPAPPPPPGG 142 (187)
Q Consensus 93 p~~~~~~~pp~~pppp~~----g~~ppppp~-~~~~ppp~pp~g~p~~ppppp~~ 142 (187)
+++.++|+++++||++++ |++||||++ +++.|||++++|.++.+||||+.
T Consensus 547 pPPlpggag~PPPPpplPg~aG~PPpPppppg~~gppPPPpp~g~~Gg~ppPP~~ 601 (1102)
T KOG1924|consen 547 PPPLPGGAGPPPPPPPLPGIAGGPPPPPPPPGGGGPPPPPPPGGFLGGPPPPPPP 601 (1102)
T ss_pred CCCCCCCCCCCccCCCCCcccCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCC
Confidence 345555665555554443 233333333 44444444455555555555444
No 6
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.71 E-value=0.19 Score=48.98 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=19.1
Q ss_pred cCCCCeEEEEEeeec-CCCCCCCCCCCCCCCCCCCCCCCC
Q 029828 49 DPDSKMFTLQLYFKS-KPVEGNKPQAAPAANGAVAPPPPP 87 (187)
Q Consensus 49 D~DtK~F~LQf~FK~-~~~~~nk~~~~~~angttaPpppp 87 (187)
|+||+.|.+-|.=|. ...+..+.-++-.++...+|+||+
T Consensus 285 ~~~t~~fi~~fi~k~~~~~~Sv~~~~~~lp~q~~~P~PPP 324 (569)
T KOG3671|consen 285 ERDTMKFIYDFIQKNPNGLPSVGQSAAELPRQKKRPPPPP 324 (569)
T ss_pred chhhccccccchhcCCCCCcccccchhhcccccCCCCCcC
Confidence 456666666666554 333333333333345555554444
No 7
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=95.57 E-value=0.0046 Score=59.86 Aligned_cols=44 Identities=32% Similarity=0.390 Sum_probs=34.3
Q ss_pred EEEeCCCceeeeecCCcccccCCC--CceeeecCCCCeEEEEEeeecCC
Q 029828 19 MFAAEPYEIIAFKVPSTEIDKSTP--KFFSHWDPDSKMFTLQLYFKSKP 65 (187)
Q Consensus 19 LiAaEPYEtIAFKIPnrEIDk~eg--kfwt~WD~DtK~F~LQf~FK~~~ 65 (187)
.+|.+|||.|||||=|+|-+.+.. -.|+| ++.+|.|-|+||.-+
T Consensus 575 F~aGpPYeDIAFkIVnkeWeyshKrGfKcqF---~ngvlqL~F~FKk~r 620 (623)
T KOG2370|consen 575 FHAGPPYEDIAFKIVNKEWEYSHKRGFKCQF---DNGVLQLWFRFKKYR 620 (623)
T ss_pred eccCCcchhhhhhhhcchhhhhhhcCcccee---eCCeeeeeehhhhhh
Confidence 468999999999999999887644 33444 567899999998643
No 8
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=91.86 E-value=6.1 Score=38.94 Aligned_cols=7 Identities=43% Similarity=0.771 Sum_probs=3.1
Q ss_pred ccCCCCc
Q 029828 38 DKSTPKF 44 (187)
Q Consensus 38 Dk~egkf 44 (187)
|+.+.+|
T Consensus 285 ~~~t~~f 291 (569)
T KOG3671|consen 285 ERDTMKF 291 (569)
T ss_pred chhhccc
Confidence 3344455
No 9
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=85.60 E-value=23 Score=36.70 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=11.5
Q ss_pred CceeeecCCCCeEEE
Q 029828 43 KFFSHWDPDSKMFTL 57 (187)
Q Consensus 43 kfwt~WD~DtK~F~L 57 (187)
.|++|||.++.+-||
T Consensus 500 e~k~~wD~~lGVt~I 514 (894)
T KOG0132|consen 500 EYKDYWDVELGVTYI 514 (894)
T ss_pred hhhhhhhcccCeeEe
Confidence 478899998887663
No 10
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=44.39 E-value=17 Score=29.32 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=14.2
Q ss_pred cccccCCCCceeeecCCCCeEEE
Q 029828 35 TEIDKSTPKFFSHWDPDSKMFTL 57 (187)
Q Consensus 35 rEIDk~egkfwt~WD~DtK~F~L 57 (187)
.+||.+.+-..-|||+|++..||
T Consensus 5 ~~lD~s~g~L~P~yD~dt~llyl 27 (136)
T PF08954_consen 5 QELDTSSGVLMPFYDEDTNLLYL 27 (136)
T ss_dssp EE----SS-EEEEE-TTT-EEEE
T ss_pred EeccCCCceeEeeEcCCCCEEEE
Confidence 47899999999999999999886
No 11
>COG0753 KatE Catalase [Inorganic ion transport and metabolism]
Probab=36.83 E-value=42 Score=32.91 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=36.7
Q ss_pred CCCCcEEEEEeCCCceeeeecCCccc-------ccCCCCceeeecCCCCeEEEEEeeecCCCCCC
Q 029828 12 DKRYQYLMFAAEPYEIIAFKVPSTEI-------DKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGN 69 (187)
Q Consensus 12 dk~~QYLLiAaEPYEtIAFKIPnrEI-------Dk~egkfwt~WD~DtK~F~LQf~FK~~~~~~n 69 (187)
|.-|-|+--.-|=+-.|.+-.=.|-| +--..-.|.+||...|.++|+||||.+.--+|
T Consensus 169 ~~~wDF~s~~PES~H~vt~l~SDrGiP~syR~M~GfgvHtf~~vN~~Ge~~~VKfH~k~~qGik~ 233 (496)
T COG0753 169 DTFWDFWSLNPESLHQVTWLMSDRGIPASYRHMEGFGVHTFKFVNAKGKRVWVKFHFKPKQGIKN 233 (496)
T ss_pred hhhhhhhhcCcHHHHHHHHHhcCCCCChhhhcCCCccceeEEEEcCCCCEEEEEEEEEecccccc
Confidence 44555555555555555544333333 22222468999999999999999998754444
No 12
>PF11281 DUF3083: Protein of unknown function (DUF3083); InterPro: IPR021433 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.87 E-value=43 Score=31.20 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=23.5
Q ss_pred ccCCCCceeeecCCCCeEEEEEeeecCCC
Q 029828 38 DKSTPKFFSHWDPDSKMFTLQLYFKSKPV 66 (187)
Q Consensus 38 Dk~egkfwt~WD~DtK~F~LQf~FK~~~~ 66 (187)
+.++..+.+|||.|.-+=+|+|.|...+.
T Consensus 243 ~~~~~q~~~~w~~~kLVet~~fvi~A~~~ 271 (316)
T PF11281_consen 243 NAEEPQFICHWDADKLVETVHFVIVAGKQ 271 (316)
T ss_pred ccCCcceeeeeccceeeeeEEEEEEecCc
Confidence 44455799999999999999999986543
No 13
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=31.81 E-value=3.2e+02 Score=28.67 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=6.1
Q ss_pred CCCeEEEEEeee
Q 029828 51 DSKMFTLQLYFK 62 (187)
Q Consensus 51 DtK~F~LQf~FK 62 (187)
++|.=-||..=+
T Consensus 241 ~~ki~emq~~ss 252 (830)
T KOG1923|consen 241 ETKIGEMQLASS 252 (830)
T ss_pred cCCccccccccc
Confidence 445555555544
No 14
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=30.52 E-value=45 Score=23.59 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=17.9
Q ss_pred cccCCCCceeeecCCCCeEEEEEe
Q 029828 37 IDKSTPKFFSHWDPDSKMFTLQLY 60 (187)
Q Consensus 37 IDk~egkfwt~WD~DtK~F~LQf~ 60 (187)
|.+.+-.+-.+||.+|+++.|..+
T Consensus 28 l~~eDP~l~~~~d~et~e~~l~g~ 51 (75)
T PF14492_consen 28 LSEEDPSLRVERDEETGELILSGM 51 (75)
T ss_dssp HHHH-TTSEEEEETTTSEEEEEES
T ss_pred HHhcCCeEEEEEcchhceEEEEEC
Confidence 334444678999999999998865
No 15
>KOG1296 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.26 E-value=74 Score=27.12 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=31.6
Q ss_pred cCCCCCCCcEEEEEeCCCceeeeecCC-------------cccccCCCCceeeecCCC
Q 029828 8 VQPFDKRYQYLMFAAEPYEIIAFKVPS-------------TEIDKSTPKFFSHWDPDS 52 (187)
Q Consensus 8 vE~pdk~~QYLLiAaEPYEtIAFKIPn-------------rEIDk~egkfwt~WD~Dt 52 (187)
.|..++-++-|||-|+-||-|-|---. .|||.+++ -|+.+|...
T Consensus 88 ~ed~e~~~~i~vfdCRG~EpidF~p~~~w~a~s~esG~~f~eidlse~-ew~dYDdk~ 144 (161)
T KOG1296|consen 88 AEDSEKFKTIVVFDCRGLEPIDFYPRTGWFAVSAESGTAFSEIDLSEK-EWTDYDDKA 144 (161)
T ss_pred ccccccccceEEEeccCCcceeecCCceEEEEecccCceeeeeecccc-cceehhhcC
Confidence 455677788999999999999875432 26777765 577777654
No 16
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=30.10 E-value=60 Score=24.04 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=16.2
Q ss_pred CCceeeecCCCCeEEEEEeeec
Q 029828 42 PKFFSHWDPDSKMFTLQLYFKS 63 (187)
Q Consensus 42 gkfwt~WD~DtK~F~LQf~FK~ 63 (187)
|.|++.=.+++|.-+||+||++
T Consensus 46 G~Y~C~~s~~~~~~~LQVyYRM 67 (69)
T cd07691 46 GTYSCKESEPNKEKTLQVYYRM 67 (69)
T ss_pred cceEecCccCCCcEEEEEEEEe
Confidence 4565554445788999999986
No 17
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=29.47 E-value=45 Score=32.47 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=29.7
Q ss_pred CCcEEEEEeCCCceeeeecCCcccccCCCCceeeecCCCCeEEE
Q 029828 14 RYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTL 57 (187)
Q Consensus 14 ~~QYLLiAaEPYEtIAFKIPnrEIDk~egkfwt~WD~DtK~F~L 57 (187)
+.||-|-+.+-.|.- |=-.|+|.++|-.+-|||.||+..||
T Consensus 240 eRq~aLwdp~nl~eP---~~~~elDtSnGvl~PFyD~dt~ivYl 280 (472)
T KOG0303|consen 240 ERQIALWDPNNLEEP---IALQELDTSNGVLLPFYDPDTSIVYL 280 (472)
T ss_pred ccceeccCcccccCc---ceeEEeccCCceEEeeecCCCCEEEE
Confidence 456666665544332 22358999999999999999999875
No 18
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=23.19 E-value=72 Score=24.02 Aligned_cols=16 Identities=6% Similarity=0.113 Sum_probs=13.0
Q ss_pred eecCCCCeEEEEEeee
Q 029828 47 HWDPDSKMFTLQLYFK 62 (187)
Q Consensus 47 ~WD~DtK~F~LQf~FK 62 (187)
+.+.+.+.|++|+|.+
T Consensus 112 ~~~~~g~~y~~q~F~~ 127 (127)
T TIGR02909 112 VEGGSGGIYWTQMFIG 127 (127)
T ss_pred EeCCCCCeEEEEEecC
Confidence 4577889999999975
No 19
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=21.43 E-value=8.1e+02 Score=24.30 Aligned_cols=9 Identities=44% Similarity=0.796 Sum_probs=3.5
Q ss_pred CCCCCCCCC
Q 029828 82 APPPPPPPQ 90 (187)
Q Consensus 82 aPpppppp~ 90 (187)
.+.+..|.+
T Consensus 305 ~P~~~aP~~ 313 (487)
T KOG4672|consen 305 IPEPDAPLQ 313 (487)
T ss_pred CCCCCCCcc
Confidence 333444433
No 20
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=21.39 E-value=1.1e+02 Score=21.44 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=9.6
Q ss_pred CCCceeeeecCCc
Q 029828 23 EPYEIIAFKVPST 35 (187)
Q Consensus 23 EPYEtIAFKIPnr 35 (187)
|||..+-+.+|+.
T Consensus 1 EPi~~v~I~~P~~ 13 (79)
T cd03710 1 EPIEELTIDVPEE 13 (79)
T ss_pred CCEEEEEEEeCch
Confidence 6777777777775
No 21
>PTZ00259 endonuclease G; Provisional
Probab=20.95 E-value=71 Score=30.51 Aligned_cols=17 Identities=41% Similarity=0.706 Sum_probs=13.8
Q ss_pred CCceeeeecCCcccccC
Q 029828 24 PYEIIAFKVPSTEIDKS 40 (187)
Q Consensus 24 PYEtIAFKIPnrEIDk~ 40 (187)
.|+.|||-|||+.|+..
T Consensus 308 ~~~a~AFv~PN~~~~~~ 324 (434)
T PTZ00259 308 PHEVAAFLMPNEPISKE 324 (434)
T ss_pred ceEEEEEEecCCCccCC
Confidence 57789999999877554
Done!