Query 029828
Match_columns 187
No_of_seqs 131 out of 180
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 06:23:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgw_C PRE-mRNA-splicing facto 100.0 1.3E-32 4.4E-37 233.7 3.4 62 1-63 148-223 (231)
2 1xiw_B T-cell surface glycopro 36.1 13 0.00045 26.0 1.2 24 40-63 46-71 (79)
3 3eud_A Protein SHQ1; CS domain 26.2 97 0.0033 23.8 4.7 40 18-60 54-93 (115)
4 2k8q_A Protein SHQ1; beta-sand 24.2 92 0.0031 24.3 4.3 40 18-60 40-79 (134)
5 4dj2_A Period circadian protei 24.1 56 0.0019 27.7 3.3 37 15-54 152-188 (320)
6 3gdi_A Period circadian protei 21.9 70 0.0024 26.9 3.5 39 15-56 141-179 (309)
7 1zso_A Hypothetical protein; s 20.8 1.9E+02 0.0064 23.0 5.6 40 14-54 101-152 (164)
8 2fe0_A SMP-1, small myristoyla 19.9 66 0.0023 25.1 2.7 25 37-62 45-69 (136)
9 3do9_A UPF0302 protein BA_1542 19.5 43 0.0015 27.3 1.6 54 8-64 50-108 (188)
10 1r75_A Hypothetical protein; s 18.0 77 0.0026 25.1 2.7 25 37-62 45-69 (141)
No 1
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-32 Score=233.72 Aligned_cols=62 Identities=35% Similarity=0.550 Sum_probs=55.8
Q ss_pred CCccccccCCCCCCCcEEEEEeCCCceeeeecCCcccccCC--------------CCceeeecCCCCeEEEEEeeec
Q 029828 1 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKST--------------PKFFSHWDPDSKMFTLQLYFKS 63 (187)
Q Consensus 1 MSayEQrvE~pdk~~QYLLiAaEPYEtIAFKIPnrEIDk~e--------------gkfwt~WD~DtK~F~LQf~FK~ 63 (187)
||+|||++|.+ ++||||||||||||||||||||+|||+.+ +|||||||+|+|+|+||||||.
T Consensus 148 MSAyEQrVE~P-Kd~QYLVIAAEPYETIAFKIPNrEIDk~e~~~~~~~~~svDElgKfwTyWD~DsK~FyLQffFK~ 223 (231)
T 4dgw_C 148 VSGLELSDTKQ-KGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQ 223 (231)
T ss_dssp EETTCCSSCCC-CCCEEEEEECSSSCCBCCEECSSCSSCCSCCSCCCCCCSSCHHHHHTEEEETTTTEEEEC-----
T ss_pred ECHHHhcccCC-CCCEEEEEEeCCCCCceeEcCChhhccccccccccccccccccCCEEEEecCCCCEEEEEEEEee
Confidence 89999999998 99999999999999999999999999998 7899999999999999999994
No 2
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=36.06 E-value=13 Score=25.96 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=12.7
Q ss_pred CCCCceee--ecCCCCeEEEEEeeec
Q 029828 40 STPKFFSH--WDPDSKMFTLQLYFKS 63 (187)
Q Consensus 40 ~egkfwt~--WD~DtK~F~LQf~FK~ 63 (187)
..|.|++. .|...++.+||++|++
T Consensus 46 ~sG~Y~C~~~~~~~~~~s~LqV~yR~ 71 (79)
T 1xiw_B 46 PRGIYRCNGTDIYKDKESTVQVHYRM 71 (79)
T ss_dssp CEEEEEEC--------CEEEEEEEEC
T ss_pred CCeEEEecCCCCCCcccEEEEEEhhh
Confidence 34456653 3333346689999986
No 3
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=26.19 E-value=97 Score=23.83 Aligned_cols=40 Identities=18% Similarity=0.512 Sum_probs=22.8
Q ss_pred EEEEeCCCceeeeecCCcccccCCCCceeeecCCCCeEEEEEe
Q 029828 18 LMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60 (187)
Q Consensus 18 LLiAaEPYEtIAFKIPnrEIDk~egkfwt~WD~DtK~F~LQf~ 60 (187)
++|-|.|| =....+|.+-+|...+ -..||.|+..|+|.|-
T Consensus 54 F~F~~~PY-yLRL~lP~~vved~~~--~A~YD~d~g~~~v~lp 93 (115)
T 3eud_A 54 IIFHLSPY-YLRLRFPHELIDDERS--TAQYDSKDECINVKVA 93 (115)
T ss_dssp EEEEETTE-EEEEECSSCEECSTTC--EEEEETTTTEEEEEEE
T ss_pred EEEecCCe-EEEEecCcceecCCCc--ceEEeCCCcEEEEEEc
Confidence 44555555 2345555554444332 3577888888877764
No 4
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=24.23 E-value=92 Score=24.31 Aligned_cols=40 Identities=18% Similarity=0.531 Sum_probs=25.0
Q ss_pred EEEEeCCCceeeeecCCcccccCCCCceeeecCCCCeEEEEEe
Q 029828 18 LMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLY 60 (187)
Q Consensus 18 LLiAaEPYEtIAFKIPnrEIDk~egkfwt~WD~DtK~F~LQf~ 60 (187)
+.|-+.|| =..+.+|.+-+|...++ ..||.|+..|+|.|-
T Consensus 40 F~F~~~PY-yLRL~LP~~V~e~~~~k--A~YD~d~~~~~VtLp 79 (134)
T 2k8q_A 40 IIFHLSPY-YLRLRFPHELIDDERST--AQYDSKDECINVKVA 79 (134)
T ss_dssp EEECSSSS-CEEECCSSCEECCSSCE--EEEETTTTEEEEEEE
T ss_pred EEEecCCe-EEEecCCCeeecCCCcc--eeEeccCCEEEEEEe
Confidence 44555555 23445555444543333 789999999999885
No 5
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=24.08 E-value=56 Score=27.74 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCceeeeecCCcccccCCCCceeeecCCCCe
Q 029828 15 YQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKM 54 (187)
Q Consensus 15 ~QYLLiAaEPYEtIAFKIPnrEIDk~egkfwt~WD~DtK~ 54 (187)
-.||||+|+++-. +|++++ |......|++--|.|-+.
T Consensus 152 ~~~~li~a~~~~s-~~~~~~--i~~~~~~Fitrh~~dG~~ 188 (320)
T 4dj2_A 152 QPCCLLIAERIHS-GYEAPR--IPPDKRIFTTRHTPSCLF 188 (320)
T ss_dssp EEEEEEEEEECCC-SSSSSC--CCGGGCEEEEEECTTCBE
T ss_pred cceeeeeeeeccC-cccccc--ccCCCceEEEEecCCceE
Confidence 5699999998865 467776 333334466666666553
No 6
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=21.88 E-value=70 Score=26.90 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCceeeeecCCcccccCCCCceeeecCCCCeEE
Q 029828 15 YQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFT 56 (187)
Q Consensus 15 ~QYLLiAaEPYEtIAFKIPnrEIDk~egkfwt~WD~DtK~F~ 56 (187)
-.|||++|.++-. +|++++..+++. .|++.-|.|-|.-|
T Consensus 141 ~~~lv~~a~~~~s-~~~~p~~~~~~~--~Fitrh~~dG~~~y 179 (309)
T 3gdi_A 141 QLCCLLLAERVHS-GYEAPRIPPEKR--IFTTTHTPNCLFQA 179 (309)
T ss_dssp -EEEEEEEEECCC-TTSSSCCCGGGC--EEEEEECTTCBEEE
T ss_pred ccEEEEEEEecCC-CccCCCcCCCCc--eEEEEecCCCeEEE
Confidence 4688999988753 577777444443 57777777755433
No 7
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=20.82 E-value=1.9e+02 Score=23.02 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=28.2
Q ss_pred CCcEEEEEeCCCceeeeecCCc------------ccccCCCCceeeecCCCCe
Q 029828 14 RYQYLMFAAEPYEIIAFKVPST------------EIDKSTPKFFSHWDPDSKM 54 (187)
Q Consensus 14 ~~QYLLiAaEPYEtIAFKIPnr------------EIDk~egkfwt~WD~DtK~ 54 (187)
-...+.|=|+-+|-|.|..-.. +||.+++. |...|++...
T Consensus 101 ~~~i~~FDCRGlEp~eF~p~~~w~a~~~esG~f~dvDLse~e-W~DYDEk~~~ 152 (164)
T 1zso_A 101 WRDFASFECRGIELIDFFPSNNFIVEDTKGKLYYDVNLSDQN-WCDYNEEHEM 152 (164)
T ss_dssp CEEEEEEEEESEEEEEECCCSCEEEEETTSCEEEEECCTTSC-EEEEETTTTE
T ss_pred ceEEEEEECCCeeeEEEecCCcEEEEECCCCcEEeeecCCCc-eeccccCCCC
Confidence 3467888999999888875542 56666643 7777877663
No 8
>2fe0_A SMP-1, small myristoylated protein 1; beta sheet, protein transport, membrane protein; NMR {Leishmania major} SCOP: b.134.1.1
Probab=19.89 E-value=66 Score=25.14 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=0.0
Q ss_pred cccCCCCceeeecCCCCeEEEEEeee
Q 029828 37 IDKSTPKFFSHWDPDSKMFTLQLYFK 62 (187)
Q Consensus 37 IDk~egkfwt~WD~DtK~F~LQf~FK 62 (187)
|...+++.|-|.| ||+.|.+++.|.
T Consensus 45 Iv~~~~~~WaFYN-DT~~y~mhV~~~ 69 (136)
T 2fe0_A 45 IVNKKKKQWAYYN-DTTQYEMHVLVT 69 (136)
T ss_dssp EEETTTTEEEEEE-CCSSEEEEEEEE
T ss_pred EEecCCCEEEEEe-CCccEEEEEEEE
No 9
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=19.47 E-value=43 Score=27.28 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=0.0
Q ss_pred cCCCCCCCcEEEEEeCCCceeeeecCCcccccCCC-----CceeeecCCCCeEEEEEeeecC
Q 029828 8 VQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTP-----KFFSHWDPDSKMFTLQLYFKSK 64 (187)
Q Consensus 8 vE~pdk~~QYLLiAaEPYEtIAFKIPnrEIDk~eg-----kfwt~WD~DtK~F~LQf~FK~~ 64 (187)
||.....-.=|+|++.=-++++|.+=-..+...+. .+-.+||.+ +||||+|+..
T Consensus 50 Ve~~~~~pr~L~iS~~~~~~~pf~F~k~~~~~~d~e~aFhdir~n~~e~---iyIqL~F~~~ 108 (188)
T 3do9_A 50 VEHAKYCPRGLVMSANCVKDTPFHFFKQNVMTTDAEKSFHDIRLNRDED---IYIQLNFKSS 108 (188)
T ss_dssp CSCGGGSTEEEEEEBSSSCSCSEEEEESSCEECCHHHHHHHHHHHCSSC---EEEEEECSSG
T ss_pred ecccccCCCeEEEeeccCCCcceEEEeCCceECCHHHHHHHHHhCCCcC---eEEEEeCCCc
No 10
>1r75_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 1.86A {Leishmania major} SCOP: b.134.1.1
Probab=18.01 E-value=77 Score=25.13 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=0.0
Q ss_pred cccCCCCceeeecCCCCeEEEEEeee
Q 029828 37 IDKSTPKFFSHWDPDSKMFTLQLYFK 62 (187)
Q Consensus 37 IDk~egkfwt~WD~DtK~F~LQf~FK 62 (187)
|...+++.|.|.| ||+.|.+++-|.
T Consensus 45 IVd~~~~~WaFYN-DT~~yeMhV~v~ 69 (141)
T 1r75_A 45 IADTEARRWAFYN-DSKELIIHVAVL 69 (141)
T ss_dssp EEETTTTEEEEEE-CCSSEEEEEEEE
T ss_pred EEecCCCEEEEEe-CCceEEEEEEEE
Done!