Query 029828
Match_columns 187
No_of_seqs 131 out of 180
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 06:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029828.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029828hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmwa2 b.1.1.4 (A:113-178) CD 43.5 18 0.0013 24.0 4.5 17 47-63 49-66 (66)
2 d1r75a_ b.134.1.1 (A:) Unnamed 29.6 16 0.0012 26.3 2.7 31 26-62 20-50 (121)
3 d2fe0a1 b.134.1.1 (A:1-131) Sm 27.8 18 0.0013 26.4 2.7 21 41-62 44-64 (131)
4 d2bv3a4 d.58.11.1 (A:404-478) 19.9 35 0.0025 21.9 2.7 23 38-60 29-51 (75)
5 d1xiwb_ b.1.1.4 (B:) CD3 delta 19.4 23 0.0017 23.9 1.7 17 48-64 56-72 (74)
6 d1pp0a_ d.103.1.1 (A:) Volvato 18.6 29 0.0021 27.1 2.4 44 13-59 126-180 (194)
7 d1emsa1 d.13.1.1 (A:281-440) N 16.7 28 0.002 24.9 1.8 40 4-50 5-44 (160)
8 d2vnud1 b.40.4.5 (D:400-494) E 16.7 81 0.0059 20.7 4.1 46 8-53 13-62 (95)
9 d2dy1a4 d.58.11.1 (A:378-454) 16.5 40 0.0029 21.4 2.4 38 23-60 3-51 (77)
10 d1wj1a_ b.55.1.2 (A:) Numb {Mo 16.0 90 0.0066 21.4 4.4 40 19-62 83-124 (156)
No 1
>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}
Probab=43.48 E-value=18 Score=24.00 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=11.8
Q ss_pred eecCC-CCeEEEEEeeec
Q 029828 47 HWDPD-SKMFTLQLYFKS 63 (187)
Q Consensus 47 ~WD~D-tK~F~LQf~FK~ 63 (187)
||..+ +|..+||+||++
T Consensus 49 Y~C~~~~~~~~lQVyYRM 66 (66)
T d1xmwa2 49 YQCGENAKSFTLQVYYRM 66 (66)
T ss_dssp EECCSSSCCCEEEEEECC
T ss_pred eECCCCCcceeEEEEEeC
Confidence 44343 567799999975
No 2
>d1r75a_ b.134.1.1 (A:) Unnamed hypothetical protein {Leishmania major [TaxId: 5664]}
Probab=29.58 E-value=16 Score=26.26 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=18.5
Q ss_pred ceeeeecCCcccccCCCCceeeecCCCCeEEEEEeee
Q 029828 26 EIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 62 (187)
Q Consensus 26 EtIAFKIPnrEIDk~egkfwt~WD~DtK~F~LQf~FK 62 (187)
..+-|+| ||. +++.|.|.| ||+.|.+++.+.
T Consensus 20 nGlLfRi----V~~-~~~~WaFYN-DT~~y~m~V~~~ 50 (121)
T d1r75a_ 20 SNILYRI----ADT-EARRWAFYN-DSKELIIHVAVL 50 (121)
T ss_dssp TTSEEEE----EET-TTTEEEEEE-CCSSEEEEEEEE
T ss_pred CcEEEEE----EeC-CCCEEEEEe-CCCcEEEEEEEE
Confidence 5666766 333 446677776 666666555543
No 3
>d2fe0a1 b.134.1.1 (A:1-131) Small myristoylated protein 1, Smp-1 {Leishmania major [TaxId: 5664]}
Probab=27.79 E-value=18 Score=26.43 Aligned_cols=21 Identities=10% Similarity=0.401 Sum_probs=12.5
Q ss_pred CCCceeeecCCCCeEEEEEeee
Q 029828 41 TPKFFSHWDPDSKMFTLQLYFK 62 (187)
Q Consensus 41 egkfwt~WD~DtK~F~LQf~FK 62 (187)
+++.|-|.| ||+.|.+++.+.
T Consensus 44 ~~~~WaFYN-DT~~y~m~V~v~ 64 (131)
T d2fe0a1 44 KKKQWAYYN-DTTQYEMHVLVT 64 (131)
T ss_dssp TTTEEEEEE-CCSSEEEEEEEE
T ss_pred CCCEEEEEe-CCCCEEEEEEEE
Confidence 455666665 667766555544
No 4
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=19.94 E-value=35 Score=21.86 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=16.6
Q ss_pred ccCCCCceeeecCCCCeEEEEEe
Q 029828 38 DKSTPKFFSHWDPDSKMFTLQLY 60 (187)
Q Consensus 38 Dk~egkfwt~WD~DtK~F~LQf~ 60 (187)
.+++-.+-.++|.+|+++.|+.+
T Consensus 29 ~~EDPsl~~~~d~et~e~il~g~ 51 (75)
T d2bv3a4 29 AEESPTFSVSTHPETGSTIISGM 51 (75)
T ss_dssp ---CCSCEEEECSSSSCEEEEBS
T ss_pred HhhCCceEEEEcCcCCcEEEeeC
Confidence 33444678889999999999865
No 5
>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.38 E-value=23 Score=23.88 Aligned_cols=17 Identities=18% Similarity=-0.046 Sum_probs=9.5
Q ss_pred ecCCCCeEEEEEeeecC
Q 029828 48 WDPDSKMFTLQLYFKSK 64 (187)
Q Consensus 48 WD~DtK~F~LQf~FK~~ 64 (187)
|+..+|.-+||+||++=
T Consensus 56 e~~~~k~~~lQVyYRMC 72 (74)
T d1xiwb_ 56 DIYKDKESTVQVHYRMC 72 (74)
T ss_dssp ------CEEEEEEEECS
T ss_pred ccccccCccEEEEEEec
Confidence 34456678999999873
No 6
>d1pp0a_ d.103.1.1 (A:) Volvatoxin A2 {Volvariella volvacea, different isoforms [TaxId: 36659]}
Probab=18.58 E-value=29 Score=27.07 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=30.3
Q ss_pred CCCcEEEEEeCCC--ce--------eeeecCCcccccCCCCcee-eecCCCCeEEEEE
Q 029828 13 KRYQYLMFAAEPY--EI--------IAFKVPSTEIDKSTPKFFS-HWDPDSKMFTLQL 59 (187)
Q Consensus 13 k~~QYLLiAaEPY--Et--------IAFKIPnrEIDk~egkfwt-~WD~DtK~F~LQf 59 (187)
.+|+|=|+.+=|| ++ |+|||= .|-.+.+-|+ -=-.|+|.|.+++
T Consensus 126 Tsy~YnIlfaIq~~~~t~s~f~~lp~ti~It---aDVeke~~w~~lT~~d~k~f~v~~ 180 (194)
T d1pp0a_ 126 SSWEYRVLFSVPFGDNAPSYFYSLVTTILIT---ADIEEKTGWWGLTSSTKKNFAVQI 180 (194)
T ss_dssp EEEEEEEEEEEEC---CTTEEEEEEEEEEEE---ESCCSGGGGTTCCTTCEEEEEEEE
T ss_pred CceEEEEEEEeecCCcccchhhhceEEEEEE---EehhheeeeeeeeeccccceEEEE
Confidence 5789988887776 32 567773 5666667666 3345788899876
No 7
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=16.70 E-value=28 Score=24.90 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=28.8
Q ss_pred cccccCCCCCCCcEEEEEeCCCceeeeecCCcccccCCCCceeeecC
Q 029828 4 FEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDP 50 (187)
Q Consensus 4 yEQrvE~pdk~~QYLLiAaEPYEtIAFKIPnrEIDk~egkfwt~WD~ 50 (187)
|-+++|+...+..|+-|+ .++||+..|..+++.++.+.|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~-------~~eiP~~~ii~ede~~~af~Di 44 (160)
T d1emsa1 5 YTLHINEKSSETGGLKFA-------RFNIPADHIFYSTPHSFVFVNL 44 (160)
T ss_dssp CCCCCCCCCCCSSCCEET-------TEECCGGGEEEECSSEEEEECS
T ss_pred hhcccCccccccCCceEc-------CCcCCcceEEEeCCCEEEEECC
Confidence 445566666667777776 7889998887777777777775
No 8
>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=16.65 E-value=81 Score=20.66 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=25.2
Q ss_pred cCCCCCCCcEEEEEeCCCceeeeecCCcccccCCCC----ceeeecCCCC
Q 029828 8 VQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK----FFSHWDPDSK 53 (187)
Q Consensus 8 vE~pdk~~QYLLiAaEPYEtIAFKIPnrEIDk~egk----fwt~WD~DtK 53 (187)
++..+++.+|.+|.-+=..---|.|+.+..+...|+ ..+.|+.++|
T Consensus 13 ~~~~~~~~~~~~v~P~d~rip~i~I~~~~~~~~~g~~Vvv~I~~w~~~~~ 62 (95)
T d2vnud1 13 VDPQSSSTQNVFVILMDKCLPKVRIRTRRAAELLDKRIVISIDSWPTTHK 62 (95)
T ss_dssp CCTTCCSCEEEEEEESSTTSCCEEEEETTGGGGTTEEEEEEEEECCTTCS
T ss_pred cCcCCCCcceEEEEECCCCCCceeccccchhHhCCCEEEEEEeecCCCCC
Confidence 334566777777776644333455665555544443 2456665544
No 9
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=16.48 E-value=40 Score=21.41 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=24.8
Q ss_pred CCCceeeeecCCc-----------ccccCCCCceeeecCCCCeEEEEEe
Q 029828 23 EPYEIIAFKVPST-----------EIDKSTPKFFSHWDPDSKMFTLQLY 60 (187)
Q Consensus 23 EPYEtIAFKIPnr-----------EIDk~egkfwt~WD~DtK~F~LQf~ 60 (187)
||.-.+|++-.++ .|.+++-.+-.++|.+|+++.|..+
T Consensus 3 ~Pv~~~ai~p~~~~d~~kl~~aL~~L~~eDPsl~v~~d~et~e~vl~g~ 51 (77)
T d2dy1a4 3 DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGH 51 (77)
T ss_dssp CCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEES
T ss_pred CCceEEEEEECCHHHHHHHHHHHHHHHhhcCeEEEEEcCCchhheEecc
Confidence 3444556665553 1333444677789999999998764
No 10
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.00 E-value=90 Score=21.37 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=26.2
Q ss_pred EEEeCCCceeeeecCCcccccCCCCceee--ecCCCCeEEEEEeee
Q 029828 19 MFAAEPYEIIAFKVPSTEIDKSTPKFFSH--WDPDSKMFTLQLYFK 62 (187)
Q Consensus 19 LiAaEPYEtIAFKIPnrEIDk~egkfwt~--WD~DtK~F~LQf~FK 62 (187)
+|..-++.+|.|.. .|....+++.| .|..+..|.+++|.-
T Consensus 83 ~l~~~~l~~ISfc~----~d~~~~~~FafI~~~~~~~~~~CHVF~c 124 (156)
T d1wj1a_ 83 LIVDQTIEKVSFCA----PDRNFDRAFSYICRDGTTRRWICHCFMA 124 (156)
T ss_dssp EEECCBTTTCCEEE----CCSSSSSEEEEEEECSSSSSEEEEEEEE
T ss_pred eeeEEeccEEEEEE----ecCCCCeEEEEEEecCCCCcEEEEEEEe
Confidence 34445777888775 35555556555 576777799988754
Done!