BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029829
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ICJ|A Chain A, The Crystal Structure Of Human Isopentenyl Diphophate
Isomerase
pdb|2ICK|A Chain A, Human Isopentenyl Diphophate Isomerase Complexed With
Substrate Analog
Length = 233
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 131/178 (73%), Gaps = 4/178 (2%)
Query: 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
FS+ F + + + QQRS K+TFP +TNTCCSHPL +EL E +ALGVR AAQR+L
Sbjct: 60 FSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLK 119
Query: 69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
ELGI E+VP +E L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+ Y Y
Sbjct: 120 AELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCY 179
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
V++E+LKELL+KA +GE +K++PWF+++ FLFKWWD+L LN+ +D + I+++
Sbjct: 180 VSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 233
>pdb|2DHO|A Chain A, Crystal Structure Of Human Ipp Isomerase I In Space Group
P212121
Length = 235
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 130/178 (73%), Gaps = 4/178 (2%)
Query: 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
FS+ F + + + QQRS K+TFP +TNTCCSHPL +EL E +ALGVR AAQR+L
Sbjct: 62 FSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLK 121
Query: 69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
ELGI E+VP +E L RI YKA SDG WGEHE+DY+L + +V++NP+P+E+ Y Y
Sbjct: 122 AELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEIKSYCY 181
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
V++E+LKELL+KA +GE +K++PWF+++ FLFKWWD+L LN+ +D + I+++
Sbjct: 182 VSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 235
>pdb|2I6K|A Chain A, Crystal Structure Of Human Type I Ipp Isomerase Complexed
With A Substrate Analog
pdb|2I6K|B Chain B, Crystal Structure Of Human Type I Ipp Isomerase Complexed
With A Substrate Analog
Length = 235
Score = 173 bits (438), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 92/177 (51%), Positives = 129/177 (72%), Gaps = 4/177 (2%)
Query: 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
FS+ F + + + QQRS K+TFP +TNTCCSHPL +EL E +ALGVR AAQR+L
Sbjct: 62 FSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLK 121
Query: 69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
ELGI E+VP +E L RI YKA SDG WGEHE+DY+L + +V++NP+P+E+ Y Y
Sbjct: 122 AELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRXNVTLNPDPNEIKSYCY 181
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHK 185
V++E+LKELL+KA +GE +K++PWF+++ FLFKWWD+L LN+ +D + I++
Sbjct: 182 VSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNL--NHLNQFVDHEKIYR 234
>pdb|2PNY|A Chain A, Structure Of Human Isopentenyl-Diphosphate Delta-Isomerase
2
Length = 246
Score = 139 bits (351), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 118/178 (66%), Gaps = 4/178 (2%)
Query: 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
FS++ F + + + QQRS TKVTFP +T++C SHPLY +EL E++A+GVR AAQR+L
Sbjct: 73 FSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQ 132
Query: 69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
ELGI E + ++ + +KA SD WGEHE+ YLL + ++V++NP+P E Y
Sbjct: 133 AELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILY 192
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 186
+++E+L ELL + GE +K++PW R + + FL++WW HL+ T +++ IH++
Sbjct: 193 LSQEELWELLEREARGE--VKVTPWLRTIAERFLYRWWPHLDDVT--PFVELHKIHRV 246
>pdb|1X84|A Chain A, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
pdb|1X84|B Chain B, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
FS F + + +R+ +K +P VWTN+ C HP ES +A R+
Sbjct: 35 FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCR 85
Query: 69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
ELG+ E P + P R Y+A E+E+ + ++ N DEV +Y++
Sbjct: 86 YELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQW 141
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDN 160
+ L ++L DA SPW + N
Sbjct: 142 CD---LADVLHGIDATP--WAFSPWMVMQATN 168
>pdb|1NFS|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFS|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFZ|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1NFZ|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1PPV|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPV|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PVF|A Chain A, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|1PVF|B Chain B, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|2VNP|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNP|B Chain B, Monoclinic Form Of Idi-1
pdb|2VNQ|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNQ|B Chain B, Monoclinic Form Of Idi-1
Length = 183
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
FS F + + +R+ +K +P VWTN+ C HP ES +A R+
Sbjct: 35 FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCR 85
Query: 69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
ELG+ E P + P R Y+A E+E+ + ++ N DEV +Y++
Sbjct: 86 YELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQW 141
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDN 160
+ L ++L DA SPW + N
Sbjct: 142 CD---LADVLHGIDATP--WAFSPWMVMQATN 168
>pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
FS F + + +R+ +K +P VWTN+ C HP ES +A R+
Sbjct: 35 FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCR 85
Query: 69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
ELG+ E P + P R Y+A E+E+ + ++ N DEV +Y++
Sbjct: 86 YELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQW 141
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDN 160
+ L ++L DA SPW + N
Sbjct: 142 CD---LADVLHGIDATP--WAFSPWMVMQATN 168
>pdb|1X83|A Chain A, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
pdb|1X83|B Chain B, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 24 QRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83
+R+ +K +P VWTN+ C HP ES +A R+ ELG+ E P +
Sbjct: 50 RRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESI 98
Query: 84 TPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADA 143
P R PS E+E+ + ++ N DEV +Y++ + L ++L DA
Sbjct: 99 YPDFRFRATDPSGIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDA 153
Query: 144 GEEGLKLSPWFRLVVDN 160
SPW + N
Sbjct: 154 TP--WAFSPWMVMQATN 168
>pdb|2G73|A Chain A, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G73|B Chain B, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G74|A Chain A, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2G74|B Chain B, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2B2K|A Chain A, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
pdb|2B2K|B Chain B, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
Length = 183
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 24 QRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83
+R+ +K +P VWTN+ C HP ES +A R+ ELG+ E P +
Sbjct: 50 RRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCRYELGV--EITPPESI 98
Query: 84 TPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADA 143
P R PS E+E+ + ++ N DEV +Y++ + L ++L DA
Sbjct: 99 YPDFRFRATDPSGIV--ENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDA 153
Query: 144 GEEGLKLSPWFRLVVDN 160
SPW + N
Sbjct: 154 TP--WAFSPWMVMQATN 168
>pdb|1I9A|A Chain A, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
pdb|1I9A|B Chain B, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
Length = 182
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
FS F + + +R+ +K +P VWTN+ C HP ES +A R+
Sbjct: 35 FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCR 85
Query: 69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
ELG+ E P + P R Y+A E+E+ + ++ N DEV +Y++
Sbjct: 86 YELGV--EITPPESIYPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVXDYQW 141
Query: 129 VNREQLKELLRKADAGEEGLKLSPW 153
+ L ++L DA SPW
Sbjct: 142 CD---LADVLHGIDATP--WAFSPW 161
>pdb|1R67|A Chain A, Y104a Mutant Of E.coli Ipp Isomerase
Length = 190
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 18/152 (11%)
Query: 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLL 68
FS F + + +R+ +K +P VWTN+ C HP ES +A R+
Sbjct: 35 FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN---------EDAVIRRCR 85
Query: 69 DELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
ELG+ E P + P R PS E+E+ + ++ N DEV +Y++
Sbjct: 86 YELGV--EITPPESIYPDFRARATDPSGIV--ENEVCPVFAARTTSALQINDDEVMDYQW 141
Query: 129 VNREQLKELLRKADAGEEGLKLSPWFRLVVDN 160
+ L ++L DA SPW + N
Sbjct: 142 CD---LADVLHGIDATP--WAFSPWMVMQATN 168
>pdb|1HX3|A Chain A, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
pdb|1HX3|B Chain B, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 24 QRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83
+R+ +K +P VWTN+ HP ES +A R+ ELG+ E P +
Sbjct: 50 RRALSKKAWPGVWTNSVAGHPQLGESN---------EDAVIRRCRYELGV--EITPPESI 98
Query: 84 TPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADA 143
P R Y+A E+E+ + ++ N DEV +Y++ + L ++L DA
Sbjct: 99 YPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDA 153
Query: 144 GEEGLKLSPWFRLVVDN 160
SPW + N
Sbjct: 154 TP--WAFSPWMVMQATN 168
>pdb|1Q54|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1Q54|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1OW2|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
pdb|1OW2|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
Length = 183
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 24 QRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83
+R+ +K +P VWTN+ HP ES +A R+ ELG+ E P +
Sbjct: 50 RRALSKKAWPGVWTNSVAGHPQLGESN---------EDAVIRRCRYELGV--EITPPESI 98
Query: 84 TPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADA 143
P R Y+A E+E+ + ++ N DEV +Y++ + L ++L DA
Sbjct: 99 YPDFR--YRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD---LADVLHGIDA 153
Query: 144 GEEGLKLSPWFRLVVDN 160
SPW + N
Sbjct: 154 TP--WAFSPWMVMQATN 168
>pdb|3HYQ|A Chain A, Crystal Structure Of Isopentenyl-Diphosphate
Delta-Isomerase From Salmonella Entericase
Length = 184
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 17/107 (15%)
Query: 24 QRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83
+RS +K +P VWTN+ C HP ++ E EE A R+ ELG V + +
Sbjct: 53 RRSLSKKAWPGVWTNSVCGHP--QQGETTEE-------AIIRRCRFELG-----VEITDL 98
Query: 84 TPL-GRILYKAPSDGKWGEHELDYLLFIVRDVSV-NPNPDEVAEYKY 128
TP+ Y+A E+E+ +F R SV N +EV +Y++
Sbjct: 99 TPVYPHFSYRATDPNGIVENEV-CPVFAARATSVLQVNSEEVXDYQW 144
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 68 LDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSV-NPNPDEVAEY 126
LD L I A+ VP + I + P+ LD +L ++ SV E+
Sbjct: 44 LDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSG 103
Query: 127 KYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTL 174
K L + + E+G+ L+P+ L D L + W +L+ L
Sbjct: 104 KVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAIL 151
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 142 DAGEEGLKL-SPWFRLVVDNFLFKWWDHLEKGTLNEVID 179
DA EE K+ +P FR +DN + W+DHL +++V+D
Sbjct: 627 DAMEEIKKIFTPEFRNRLDNII--WFDHLSTDVIHQVVD 663
>pdb|1ZSX|A Chain A, Crystal Structure Of Human Potassium Channel Kv
Beta-Subunit (Kcnab2)
Length = 347
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 22 GQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81
G +RS +T + W + +IE G++ + +R L+ + + + P D
Sbjct: 94 GWRRSSLVITTKIFWGGKAETERGLSRKHIIE----GLKASLERLQLEYVDVVFANRP-D 148
Query: 82 EFTPL-------------GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
TP+ G +Y S +W E+ + R ++ P E AEY
Sbjct: 149 PNTPMEETVRAMTHVINQGMAMYWGTS--RWSSMEIMEAYSVARQFNLTPPICEQAEYHM 206
Query: 129 VNRE----QLKELLRKADAG 144
RE QL EL K G
Sbjct: 207 FQREKVEVQLPELFHKIGVG 226
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 56 ALGVRNAAQRKL-----LDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLL 108
A+GVR+ + K+ L E GI ++ V++ ++Y DG E E DY++
Sbjct: 49 AIGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVI 106
>pdb|2X3V|A Chain A, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|B Chain B, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|C Chain C, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3W|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 337
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 25/134 (18%)
Query: 39 TCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP------------VDEFTP- 85
C L E+ + V Q+KL+D++ C +DV V + TP
Sbjct: 160 ACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQ 219
Query: 86 ----LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 141
+ ++ + ++ E L +L ++ D+ + N E + Y +V RE L++ +R A
Sbjct: 220 YMEGMEQVFEQCQ---QFEEKRLVFLKEVLLDIKRHLNLAENSSYMHVYRE-LEQAIRGA 275
Query: 142 DAGEEGLKLSPWFR 155
DA +E L+ WFR
Sbjct: 276 DA-QEDLR---WFR 285
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 22/127 (17%)
Query: 26 SGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 85
SG K T+ + + R ELIEE + + + ++ +++GI A + +++P
Sbjct: 426 SGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSP 485
Query: 86 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGE 145
+I++ +W D L F E A Y + +LRKA+ E
Sbjct: 486 DKKIIF------RWE----DVLNF----------EGESAPYIQYAHARCSSILRKAE--E 523
Query: 146 EGLKLSP 152
EG+K+ P
Sbjct: 524 EGIKVDP 530
>pdb|3EB4|A Chain A, Voltage-Dependent K+ Channel Beta Subunit (I211r) In
Complex With Cortisone
Length = 327
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 22 GQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81
G +RS +T + W + +IE G++ + +R L+ + + + P D
Sbjct: 73 GWRRSSLVITTKIFWGGKAETERGLSRKHIIE----GLKASLERLQLEYVDVVFANRP-D 127
Query: 82 EFTPL-------------GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
TP+ G +Y S +W E+ + R ++ P E AEY
Sbjct: 128 PNTPMEETVRAMTHVINQGMAMYWGTS--RWSSMEIMEAYSVARQFNLIPPRCEQAEYHM 185
Query: 129 VNRE----QLKELLRKADAG 144
RE QL EL K G
Sbjct: 186 FQREKVEVQLPELFHKIGVG 205
>pdb|3EAU|A Chain A, Voltage-Dependent K+ Channel Beta Subunit In Complex With
Cortisone
Length = 327
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 22 GQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81
G +RS +T + W + +IE G++ + +R L+ + + + P D
Sbjct: 73 GWRRSSLVITTKIFWGGKAETERGLSRKHIIE----GLKASLERLQLEYVDVVFANRP-D 127
Query: 82 EFTPL-------------GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
TP+ G +Y S +W E+ + R ++ P E AEY
Sbjct: 128 PNTPMEETVRAMTHVINQGMAMYWGTS--RWSSMEIMEAYSVARQFNLIPPICEQAEYHM 185
Query: 129 VNRE----QLKELLRKADAG 144
RE QL EL K G
Sbjct: 186 FQREKVEVQLPELFHKIGVG 205
>pdb|1QRQ|A Chain A, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
pdb|1QRQ|B Chain B, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
pdb|1QRQ|C Chain C, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
pdb|1QRQ|D Chain D, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
Length = 325
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 22 GQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81
G +RS +T + W + +IE G++ + +R L+ + + + P D
Sbjct: 72 GWRRSSLVITTKIFWGGKAETERGLSRKHIIE----GLKASLERLQLEYVDVVFANRP-D 126
Query: 82 EFTPL-------------GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
TP+ G +Y S +W E+ + R ++ P E AEY
Sbjct: 127 PNTPMEETVRAMTHVINQGMAMYWGTS--RWSSMEIMEAYSVARQFNLIPPICEQAEYHM 184
Query: 129 VNRE----QLKELLRKADAG 144
RE QL EL K G
Sbjct: 185 FQREKVEVQLPELFHKIGVG 204
>pdb|2A79|A Chain A, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
pdb|2R9R|A Chain A, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|G Chain G, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|3LNM|A Chain A, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|C Chain C, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 333
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 22 GQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81
G +RS +T + W + +IE G++ + +R L+ + + + P D
Sbjct: 73 GWRRSSLVITTKIFWGGKAETERGLSRKHIIE----GLKASLERLQLEYVDVVFANRP-D 127
Query: 82 EFTPL-------------GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
TP+ G +Y S +W E+ + R ++ P E AEY
Sbjct: 128 PNTPMEETVRAMTHVINQGMAMYWGTS--RWSSMEIMEAYSVARQFNLIPPICEQAEYHM 185
Query: 129 VNRE----QLKELLRKADAG 144
RE QL EL K G
Sbjct: 186 FQREKVEVQLPELFHKIGVG 205
>pdb|1EXB|A Chain A, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of
Voltage-Dependent K Channels
Length = 332
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 22 GQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81
G +RS +T + W + +IE G++ + +R L+ + + + P D
Sbjct: 72 GWRRSSLVITTKIFWGGKAETERGLSRKHIIE----GLKASLERLQLEYVDVVFANRP-D 126
Query: 82 EFTPL-------------GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
TP+ G +Y S +W E+ + R ++ P E AEY
Sbjct: 127 PNTPMEETVRAMTHVINQGMAMYWGTS--RWSSMEIMEAYSVARQFNLIPPICEQAEYHM 184
Query: 129 VNRE----QLKELLRKADAG 144
RE QL EL K G
Sbjct: 185 FQREKVEVQLPELFHKIGVG 204
>pdb|3HAI|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|C Chain C, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|D Chain D, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
Length = 308
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 25/134 (18%)
Query: 39 TCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP------------VDEFTP- 85
C L E+ + V Q+KL D++ C +DV V + TP
Sbjct: 163 ACKEEKLAMTREMNSKTEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQ 222
Query: 86 ----LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 141
+ ++ + ++ E L +L ++ D+ + N E + Y +V RE L++ +R A
Sbjct: 223 YMENMEQVFEQCQ---QFEEKRLVFLKEVLLDIKRHLNLAENSSYIHVYRE-LEQAIRGA 278
Query: 142 DAGEEGLKLSPWFR 155
DA +E L+ WFR
Sbjct: 279 DA-QEDLR---WFR 288
>pdb|3QNI|A Chain A, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3QNI|B Chain B, Crystal Structure Of Human Pacsin 1 F-Bar Domain
Length = 307
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 25/134 (18%)
Query: 39 TCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP------------VDEFTP- 85
C L E+ + V Q+KL D++ C +DV V + TP
Sbjct: 163 ACKEEKLAMTREMNSKTEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQ 222
Query: 86 ----LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 141
+ ++ + ++ E L +L ++ D+ + N E + Y +V RE L++ +R A
Sbjct: 223 YMENMEQVFEQCQ---QFEEKRLVFLKEVLLDIKRHLNLAENSSYIHVYRE-LEQAIRGA 278
Query: 142 DAGEEGLKLSPWFR 155
DA +E L+ WFR
Sbjct: 279 DA-QEDLR---WFR 288
>pdb|3HAH|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
pdb|3HAH|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
Length = 325
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 25/134 (18%)
Query: 39 TCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP------------VDEFTP- 85
C L E+ + V Q+KL D++ C +DV V + TP
Sbjct: 163 ACKEEKLAMTREMNSKTEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQ 222
Query: 86 ----LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 141
+ ++ + ++ E L +L ++ D+ + N E + Y +V RE L++ +R A
Sbjct: 223 YMENMEQVFEQCQ---QFEEKRLVFLKEVLLDIKRHLNLAENSSYIHVYRE-LEQAIRGA 278
Query: 142 DAGEEGLKLSPWFR 155
DA +E L+ WFR
Sbjct: 279 DA-QEDLR---WFR 288
>pdb|3LUT|A Chain A, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 367
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 22 GQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81
G +RS +T + W + +IE G++ + +R L+ + + + P D
Sbjct: 107 GWRRSSLVITTKIFWGGKAETERGLSRKHIIE----GLKASLERLQLEYVDVVFANRP-D 161
Query: 82 EFTPL-------------GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKY 128
TP+ G +Y S +W E+ + R ++ P E AEY
Sbjct: 162 PNTPMEETVRAMTHVINQGMAMYWGTS--RWSSMEIMEAYSVARQFNLIPPICEQAEYHM 219
Query: 129 VNRE----QLKELLRKADAG 144
RE QL EL K G
Sbjct: 220 FQREKVEVQLPELFHKIGVG 239
>pdb|1LF6|A Chain A, Crystal Structure Of Bacterial Glucoamylase
pdb|1LF6|B Chain B, Crystal Structure Of Bacterial Glucoamylase
pdb|1LF9|A Chain A, Crystal Structure Of Bacterial Glucoamylase Complexed With
Acarbose
pdb|1LF9|B Chain B, Crystal Structure Of Bacterial Glucoamylase Complexed With
Acarbose
Length = 684
Score = 26.6 bits (57), Expect = 9.3, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 45 LYRESELIEEN-----ALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKW 99
+Y + E+++ + LGV++A K+L+ L + + VD TP G Y+ DG +
Sbjct: 525 VYDQKEIVDPSFLELVRLGVKSADDPKILNTLKVVDSTIKVD--TPKGPSWYRYNHDG-Y 581
Query: 100 GE 101
GE
Sbjct: 582 GE 583
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,901,225
Number of Sequences: 62578
Number of extensions: 250057
Number of successful extensions: 651
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 632
Number of HSP's gapped (non-prelim): 37
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)