Query 029829
Match_columns 187
No_of_seqs 141 out of 1597
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:19:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02552 isopentenyl-diphospha 100.0 2.2E-40 4.7E-45 274.7 19.0 180 2-187 52-247 (247)
2 KOG0142 Isopentenyl pyrophosph 100.0 4.3E-40 9.3E-45 260.0 10.5 178 2-186 48-225 (225)
3 COG1443 Idi Isopentenyldiphosp 100.0 9.3E-36 2E-40 231.3 10.6 145 1-161 27-172 (185)
4 TIGR02150 IPP_isom_1 isopenten 100.0 1.5E-29 3.2E-34 197.2 15.8 135 2-157 23-157 (158)
5 cd02885 IPP_Isomerase Isopente 100.0 2.2E-29 4.8E-34 197.2 15.9 140 1-158 24-164 (165)
6 PRK03759 isopentenyl-diphospha 100.0 4.4E-29 9.6E-34 199.0 16.9 143 2-162 30-172 (184)
7 cd03676 Nudix_hydrolase_3 Memb 100.0 3.8E-29 8.3E-34 198.3 16.2 146 1-164 27-178 (180)
8 cd04692 Nudix_Hydrolase_33 Mem 100.0 1.6E-27 3.4E-32 182.4 15.0 135 5-156 1-141 (144)
9 PLN02791 Nudix hydrolase homol 99.9 2E-26 4.4E-31 215.1 17.4 143 2-161 28-186 (770)
10 PRK15393 NUDIX hydrolase YfcD; 99.9 2.9E-24 6.4E-29 170.8 16.4 136 2-165 33-168 (180)
11 cd04697 Nudix_Hydrolase_38 Mem 99.9 1.3E-24 2.8E-29 162.8 13.5 116 7-141 1-116 (126)
12 cd04693 Nudix_Hydrolase_34 Mem 99.9 2.9E-24 6.3E-29 160.5 12.9 124 7-156 1-125 (127)
13 PRK15472 nucleoside triphospha 99.9 1.2E-21 2.5E-26 149.2 14.3 130 5-159 2-136 (141)
14 PRK09438 nudB dihydroneopterin 99.9 1.6E-20 3.4E-25 144.0 14.8 133 2-163 3-144 (148)
15 cd04694 Nudix_Hydrolase_35 Mem 99.8 9.9E-20 2.1E-24 139.9 15.3 124 7-141 2-135 (143)
16 PF00293 NUDIX: NUDIX domain; 99.8 1.4E-20 3E-25 139.8 10.1 120 5-141 1-123 (134)
17 cd03426 CoAse Coenzyme A pyrop 99.8 2.4E-20 5.3E-25 145.0 11.2 113 5-137 1-118 (157)
18 cd04682 Nudix_Hydrolase_23 Mem 99.8 5.4E-20 1.2E-24 136.6 12.3 111 6-137 1-114 (122)
19 cd04681 Nudix_Hydrolase_22 Mem 99.8 8.9E-20 1.9E-24 136.3 12.4 128 7-162 2-130 (130)
20 PLN02839 nudix hydrolase 99.8 1.4E-19 3E-24 156.4 14.7 145 3-165 200-349 (372)
21 cd04696 Nudix_Hydrolase_37 Mem 99.8 3.5E-19 7.5E-24 132.6 13.9 111 7-137 3-114 (125)
22 cd04679 Nudix_Hydrolase_20 Mem 99.8 3.2E-19 6.9E-24 132.7 13.2 114 6-139 2-117 (125)
23 PRK15434 GDP-mannose mannosyl 99.8 5.6E-19 1.2E-23 138.1 15.0 119 4-137 15-137 (159)
24 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 9.7E-19 2.1E-23 131.9 15.7 116 5-141 1-119 (137)
25 cd03674 Nudix_Hydrolase_1 Memb 99.8 9E-19 2E-23 133.1 15.5 131 5-162 1-137 (138)
26 cd03673 Ap6A_hydrolase Diadeno 99.8 9.1E-19 2E-23 130.2 15.1 124 7-162 2-130 (131)
27 cd03430 GDPMH GDP-mannose glyc 99.8 7.7E-19 1.7E-23 134.8 14.8 116 7-137 13-132 (144)
28 cd04684 Nudix_Hydrolase_25 Con 99.8 6.8E-19 1.5E-23 130.4 13.5 112 8-137 2-117 (128)
29 cd04664 Nudix_Hydrolase_7 Memb 99.8 6.2E-19 1.4E-23 131.8 12.7 113 7-140 2-121 (129)
30 cd04700 DR1025_like DR1025 fro 99.8 1.6E-18 3.6E-23 132.5 13.5 115 6-141 13-129 (142)
31 cd03427 MTH1 MutT homolog-1 (M 99.8 1.8E-18 4E-23 130.2 13.1 123 7-162 2-125 (137)
32 cd04683 Nudix_Hydrolase_24 Mem 99.8 2.2E-18 4.7E-23 127.1 12.9 113 8-139 2-116 (120)
33 cd04678 Nudix_Hydrolase_19 Mem 99.8 2.1E-18 4.6E-23 128.8 12.8 119 6-153 2-124 (129)
34 cd03671 Ap4A_hydrolase_plant_l 99.8 5.9E-18 1.3E-22 129.9 15.5 115 5-138 2-132 (147)
35 cd04673 Nudix_Hydrolase_15 Mem 99.8 3.5E-18 7.6E-23 125.7 13.6 111 8-137 2-114 (122)
36 cd04680 Nudix_Hydrolase_21 Mem 99.8 2.5E-18 5.5E-23 126.3 12.7 105 8-137 2-108 (120)
37 cd04691 Nudix_Hydrolase_32 Mem 99.8 3.4E-18 7.3E-23 126.5 12.6 110 6-140 1-111 (117)
38 cd03429 NADH_pyrophosphatase N 99.8 3.8E-18 8.3E-23 128.7 11.5 105 8-137 2-107 (131)
39 cd03675 Nudix_Hydrolase_2 Cont 99.8 2E-17 4.4E-22 124.3 15.1 125 9-163 3-129 (134)
40 cd04677 Nudix_Hydrolase_18 Mem 99.8 4.1E-18 9E-23 127.3 11.0 114 4-139 5-124 (132)
41 cd04699 Nudix_Hydrolase_39 Mem 99.8 1.2E-17 2.7E-22 123.8 13.2 114 8-139 3-116 (129)
42 PRK00714 RNA pyrophosphohydrol 99.8 2.6E-17 5.7E-22 127.9 15.3 115 4-138 6-136 (156)
43 cd04670 Nudix_Hydrolase_12 Mem 99.8 3.8E-17 8.3E-22 121.8 14.3 110 6-136 2-112 (127)
44 cd04676 Nudix_Hydrolase_17 Mem 99.7 2E-17 4.4E-22 122.1 12.0 111 7-137 3-117 (129)
45 cd04688 Nudix_Hydrolase_29 Mem 99.7 4.5E-17 9.8E-22 121.2 13.5 110 5-137 1-118 (126)
46 cd03428 Ap4A_hydrolase_human_l 99.7 5.4E-17 1.2E-21 121.0 12.2 111 6-139 2-117 (130)
47 cd04689 Nudix_Hydrolase_30 Mem 99.7 1.3E-16 2.9E-21 118.6 13.1 108 6-135 1-112 (125)
48 PRK10776 nucleoside triphospha 99.7 1.5E-16 3.4E-21 117.7 13.0 120 8-161 6-126 (129)
49 PRK10546 pyrimidine (deoxy)nuc 99.7 2.9E-16 6.2E-21 118.0 14.5 121 9-163 6-127 (135)
50 cd04671 Nudix_Hydrolase_13 Mem 99.7 1E-16 2.2E-21 119.9 11.6 104 8-136 2-109 (123)
51 cd04690 Nudix_Hydrolase_31 Mem 99.7 1.6E-16 3.5E-21 116.6 12.3 108 8-136 2-109 (118)
52 PLN02325 nudix hydrolase 99.7 1.4E-16 3.1E-21 122.3 12.5 113 6-137 9-125 (144)
53 cd04695 Nudix_Hydrolase_36 Mem 99.7 3.9E-16 8.4E-21 117.4 14.3 104 15-139 11-116 (131)
54 cd04685 Nudix_Hydrolase_26 Mem 99.7 2.6E-16 5.6E-21 119.4 13.1 114 7-137 1-123 (133)
55 cd04687 Nudix_Hydrolase_28 Mem 99.7 3.6E-16 7.8E-21 116.8 13.7 111 7-137 2-121 (128)
56 cd03425 MutT_pyrophosphohydrol 99.7 3.4E-16 7.3E-21 114.4 13.2 107 8-136 3-109 (124)
57 cd03672 Dcp2p mRNA decapping e 99.7 3.3E-16 7.1E-21 120.5 12.5 132 8-170 3-139 (145)
58 cd02883 Nudix_Hydrolase Nudix 99.7 4.2E-16 9.2E-21 112.8 12.2 110 7-137 1-112 (123)
59 cd04672 Nudix_Hydrolase_14 Mem 99.7 3.2E-16 6.9E-21 116.4 11.5 110 7-138 3-113 (123)
60 cd04666 Nudix_Hydrolase_9 Memb 99.7 8.7E-16 1.9E-20 114.8 13.9 113 8-140 2-118 (122)
61 PRK10707 putative NUDIX hydrol 99.7 5.4E-16 1.2E-20 124.5 12.5 115 8-139 32-148 (190)
62 PLN02709 nudix hydrolase 99.7 4.8E-16 1E-20 127.1 11.7 118 3-137 30-155 (222)
63 PRK00241 nudC NADH pyrophospha 99.7 6.7E-16 1.4E-20 129.2 12.9 104 8-137 134-238 (256)
64 cd04669 Nudix_Hydrolase_11 Mem 99.7 5.3E-16 1.1E-20 115.3 10.9 102 9-137 3-114 (121)
65 cd04667 Nudix_Hydrolase_10 Mem 99.7 2.8E-15 6E-20 109.6 12.3 93 15-137 8-101 (112)
66 COG1051 ADP-ribose pyrophospha 99.6 3.2E-15 7E-20 115.1 11.9 111 6-137 10-122 (145)
67 PRK11762 nudE adenosine nucleo 99.6 2E-14 4.4E-19 114.6 16.5 114 7-141 48-163 (185)
68 cd04661 MRP_L46 Mitochondrial 99.6 3.4E-15 7.4E-20 112.8 10.6 108 17-139 12-122 (132)
69 TIGR00586 mutt mutator mutT pr 99.6 1.6E-14 3.5E-19 107.1 13.6 109 7-137 5-113 (128)
70 cd04511 Nudix_Hydrolase_4 Memb 99.6 9E-15 1.9E-19 109.8 11.9 102 8-135 15-117 (130)
71 PRK05379 bifunctional nicotina 99.6 3.1E-14 6.8E-19 123.5 16.5 132 7-162 204-338 (340)
72 cd04686 Nudix_Hydrolase_27 Mem 99.6 2.5E-14 5.4E-19 107.8 13.4 112 8-139 2-121 (131)
73 TIGR00052 nudix-type nucleosid 99.5 2.5E-13 5.4E-18 108.6 12.5 114 8-141 46-169 (185)
74 PRK08999 hypothetical protein; 99.5 4.3E-13 9.4E-18 114.5 13.7 108 7-136 6-113 (312)
75 PRK10729 nudF ADP-ribose pyrop 99.5 2.3E-12 4.9E-17 104.4 16.2 115 7-141 50-175 (202)
76 COG2816 NPY1 NTP pyrophosphohy 99.5 1.8E-13 4E-18 114.7 8.1 107 8-140 146-253 (279)
77 KOG4313 Thiamine pyrophosphoki 99.4 9.4E-14 2E-18 113.8 5.5 129 19-165 149-279 (306)
78 cd04662 Nudix_Hydrolase_5 Memb 99.4 2.7E-12 5.9E-17 96.7 12.3 59 8-76 2-65 (126)
79 PRK15009 GDP-mannose pyrophosp 99.4 3.8E-11 8.2E-16 96.5 16.2 114 7-141 46-170 (191)
80 KOG3069 Peroxisomal NUDIX hydr 99.3 7.9E-12 1.7E-16 102.0 9.7 114 7-138 44-164 (246)
81 TIGR02705 nudix_YtkD nucleosid 99.3 7E-11 1.5E-15 92.1 14.2 113 8-155 26-139 (156)
82 cd04665 Nudix_Hydrolase_8 Memb 99.3 3E-11 6.6E-16 90.0 11.4 100 8-134 2-102 (118)
83 cd04674 Nudix_Hydrolase_16 Mem 99.3 1E-10 2.2E-15 87.2 11.7 102 9-133 7-111 (118)
84 KOG3084 NADH pyrophosphatase I 99.2 7.9E-12 1.7E-16 105.8 4.8 136 8-166 189-331 (345)
85 cd03670 ADPRase_NUDT9 ADP-ribo 99.2 1.5E-10 3.2E-15 92.7 10.9 100 19-136 50-170 (186)
86 PLN03143 nudix hydrolase; Prov 99.2 1E-09 2.2E-14 93.3 14.9 116 7-140 129-268 (291)
87 COG0494 MutT NTP pyrophosphohy 99.2 3.2E-10 6.9E-15 83.4 10.5 115 8-139 13-136 (161)
88 cd04663 Nudix_Hydrolase_6 Memb 99.1 1.7E-09 3.6E-14 81.6 10.7 52 8-75 2-55 (126)
89 cd03431 DNA_Glycosylase_C DNA 99.0 1.3E-08 2.9E-13 73.8 13.7 104 6-137 2-105 (118)
90 KOG2839 Diadenosine and diphos 98.9 1.5E-08 3.2E-13 77.3 11.1 124 7-163 10-140 (145)
91 KOG0648 Predicted NUDIX hydrol 98.5 5.4E-08 1.2E-12 82.3 3.1 116 7-140 116-234 (295)
92 KOG3041 Nucleoside diphosphate 98.5 2.8E-06 6E-11 68.1 12.4 112 8-141 75-198 (225)
93 COG4119 Predicted NTP pyrophos 98.2 8.6E-06 1.9E-10 61.1 8.6 112 5-141 2-139 (161)
94 COG4112 Predicted phosphoester 98.2 3E-05 6.5E-10 60.5 10.9 136 7-160 62-201 (203)
95 PF14815 NUDIX_4: NUDIX domain 98.1 1.2E-05 2.6E-10 58.7 6.3 102 11-137 2-103 (114)
96 PF14443 DBC1: DBC1 96.2 0.038 8.2E-07 41.5 7.9 82 19-110 9-91 (126)
97 KOG4195 Transient receptor pot 95.8 0.023 5E-07 46.7 5.7 39 19-72 140-178 (275)
98 PF13869 NUDIX_2: Nucleotide h 95.4 0.084 1.8E-06 42.4 7.5 118 2-136 40-169 (188)
99 PRK10880 adenine DNA glycosyla 95.4 0.23 5.1E-06 43.6 10.8 33 6-39 230-262 (350)
100 KOG4432 Uncharacterized NUDIX 89.4 4.6 9.9E-05 34.9 9.7 124 4-142 227-381 (405)
101 KOG1689 mRNA cleavage factor I 87.0 1.7 3.7E-05 34.5 5.3 57 2-74 66-124 (221)
102 KOG4548 Mitochondrial ribosoma 83.4 6.3 0.00014 33.1 7.3 106 20-140 141-250 (263)
103 PRK13910 DNA glycosylase MutY; 78.3 3.6 7.7E-05 35.3 4.4 29 8-39 188-216 (289)
104 KOG4432 Uncharacterized NUDIX 78.2 9.3 0.0002 33.1 6.8 56 40-112 84-139 (405)
105 KOG2937 Decapping enzyme compl 66.3 4.6 0.0001 35.2 2.3 82 36-138 108-193 (348)
106 PF07494 Reg_prop: Two compone 65.3 8.9 0.00019 20.0 2.5 21 3-23 1-21 (24)
107 PF03487 IL13: Interleukin-13; 62.9 7.4 0.00016 23.4 2.1 22 41-71 15-36 (43)
108 KOG1202 Animal-type fatty acid 49.8 9.4 0.0002 39.2 1.6 54 19-77 239-295 (2376)
109 COG1194 MutY A/G-specific DNA 48.2 9.2 0.0002 33.6 1.2 34 6-40 235-268 (342)
110 PF12623 Hen1_L: RNA repair, l 29.8 98 0.0021 25.9 4.3 41 123-166 192-232 (245)
111 PF12990 DUF3874: Domain of un 25.2 1.5E+02 0.0032 20.1 3.9 40 122-165 19-58 (73)
112 KOG4485 Uncharacterized conser 23.7 2.8E+02 0.0061 25.8 6.4 63 60-139 129-191 (724)
113 PF06089 Asparaginase_II: L-as 22.1 1.1E+02 0.0023 26.8 3.4 59 9-78 16-99 (324)
114 PF11576 DUF3236: Protein of u 20.3 4.2E+02 0.0091 20.5 6.0 41 8-71 108-148 (154)
No 1
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=100.00 E-value=2.2e-40 Score=274.69 Aligned_cols=180 Identities=71% Similarity=1.147 Sum_probs=155.4
Q ss_pred CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCCh--------hhhhhhhcHHHHHHHHHHHHhCC
Q 029829 2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESE--------LIEENALGVRNAAQRKLLDELGI 73 (187)
Q Consensus 2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~--------~~~~~~~~~~~Aa~REl~EE~Gl 73 (187)
+|++||+|+|+|+|++|+||||||+..|.+|||+|+++||||+.+||++ +.+++.+|+.+||+||+.|||||
T Consensus 52 ~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI 131 (247)
T PLN02552 52 RGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGI 131 (247)
T ss_pred CCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCC
Confidence 6899999999999999999999999999999999999999999998652 22333445789999999999999
Q ss_pred CccCCCCCCeeeeeEEEEEccCC------CCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHHHHhccCCC
Q 029829 74 CAEDVPVDEFTPLGRILYKAPSD------GKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKADAGE 145 (187)
Q Consensus 74 ~~~~~~~~~l~~~~~~~y~~~~~------~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~ 145 (187)
.+..+++.++.+++++.|..+.. +.+.+++++++|+... ..++.+|++||.+++|++++++.+++.+.
T Consensus 132 ~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~---- 207 (247)
T PLN02552 132 PAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREELKEMMRKE---- 207 (247)
T ss_pred CccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHHHHHHhhc----
Confidence 98766655678889888887654 5566788988877632 34788999999999999999999998854
Q ss_pred CCcccChhHHHHHHHHHHHHHhHhcccccccccCCCceeecC
Q 029829 146 EGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 187 (187)
Q Consensus 146 ~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (187)
.+..+|||++.++++|+..||+++++. .++++|+.||||.
T Consensus 208 ~~~~~tpw~~~~~~~~l~~w~~~~~~~--~~~~~~~~i~~~~ 247 (247)
T PLN02552 208 SGLKLSPWFRLIVDNFLMKWWDDLEKG--TEAVDMKTIHKLM 247 (247)
T ss_pred CCcccCHHHHHHHHHHHHHHHhhhcch--hhccChhhheecC
Confidence 368899999999999999999999999 9999999999983
No 2
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.3e-40 Score=260.04 Aligned_cols=178 Identities=58% Similarity=1.005 Sum_probs=165.1
Q ss_pred CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829 2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81 (187)
Q Consensus 2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~ 81 (187)
.|++||||||++||++|++||||||..|.+|||.|.++||+|+......+.+.++.|+..||+|.|.-|+||+...++.+
T Consensus 48 kglLHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pe 127 (225)
T KOG0142|consen 48 KGLLHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPE 127 (225)
T ss_pred hhhhhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHH
Confidence 57999999999999999999999999999999999999999999655555677789999999999999999999999888
Q ss_pred CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829 82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 161 (187)
Q Consensus 82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~ 161 (187)
+++++++++|.++.+..|+|||++|+++.+.+.++.||++||++++||+.+++.+++++.+ ..||||++.|.++|
T Consensus 128 e~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e~ryvs~eelkel~~~~~-----~~~TPWfkli~~~~ 202 (225)
T KOG0142|consen 128 EFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRYVSREELKELVAKAS-----AGFTPWFKLISENF 202 (225)
T ss_pred HcccceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhHhheecHHHHHHHHhccc-----cCCChHHHHHHHHH
Confidence 9999999999999999999999999999998999999999999999999999999999874 46999999999999
Q ss_pred HHHHHhHhcccccccccCCCceeec
Q 029829 162 LFKWWDHLEKGTLNEVIDMKTIHKL 186 (187)
Q Consensus 162 l~~~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
|+.||+.+++. .++.+++.||++
T Consensus 203 l~~WW~~l~~~--~~~~~~~~i~r~ 225 (225)
T KOG0142|consen 203 LFKWWDDLDKL--TEFEEDTNIHRL 225 (225)
T ss_pred HHHHHhhhccc--ccCccccccccC
Confidence 99999999975 467779999985
No 3
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=100.00 E-value=9.3e-36 Score=231.28 Aligned_cols=145 Identities=36% Similarity=0.542 Sum_probs=134.8
Q ss_pred CCCC-CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 029829 1 MHKC-VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP 79 (187)
Q Consensus 1 ~~g~-~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~ 79 (187)
|++. +|||||++|||.+|++||+||+..|.+|||.|+|+||||+.+||+ ...||+|.+.+|+||++..
T Consensus 27 ~d~~~LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es---------~~~A~~rRl~~ELGie~~~-- 95 (185)
T COG1443 27 GDTPRLHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGES---------NEDAARRRLAYELGIEPDQ-- 95 (185)
T ss_pred cccHHHHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCc---------hHHHHHHHHHHHhCCCCcc--
Confidence 4566 799999999999999999999999999999999999999999999 7999999999999999986
Q ss_pred CCCeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829 80 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD 159 (187)
Q Consensus 80 ~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~ 159 (187)
.+.+.++.+|+|+++..++++|+|+|+|++++.+..+.+|++||.+++|++++++.+++... +..||||++++..
T Consensus 96 ~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~~~npdEV~~~~wv~~e~l~~~~~~~-----~~~fsPW~~~~~~ 170 (185)
T COG1443 96 YDKLEILPRFRYRAADPDGIVENEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMVDAT-----PWAFSPWFVIQAE 170 (185)
T ss_pred cCccccccceEEeccCCCCcceeeeeeEEEEeecCCCCCChHHhhheeccCHHHHHHhhcCC-----ceeeChHHHHHhc
Confidence 34567889999999999999999999999999877889999999999999999999999986 4689999999999
Q ss_pred HH
Q 029829 160 NF 161 (187)
Q Consensus 160 ~~ 161 (187)
++
T Consensus 171 ~~ 172 (185)
T COG1443 171 ND 172 (185)
T ss_pred ch
Confidence 88
No 4
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.97 E-value=1.5e-29 Score=197.17 Aligned_cols=135 Identities=46% Similarity=0.734 Sum_probs=113.1
Q ss_pred CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829 2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81 (187)
Q Consensus 2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~ 81 (187)
.|++|++|+++|+|++|+|||+||+.++..+||+|++|+|||+++||+ +||+||+.|||||++...+
T Consensus 23 ~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE~-----------eaa~REl~EE~Gl~~~~~~-- 89 (158)
T TIGR02150 23 ETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGEL-----------EAAIRRLREELGIPADDVP-- 89 (158)
T ss_pred CCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCcccH-----------HHHHHHHHHHHCCCccccc--
Confidence 599999999999999999999999999999999999999999999984 9999999999999987643
Q ss_pred CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHH
Q 029829 82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLV 157 (187)
Q Consensus 82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~ 157 (187)
+..++.+.|.....++ .++++++|.+..+..+.++++|+++++|++++++.+++... ++.+|||++++
T Consensus 90 -l~~~~~~~~~~~~~~g--~~~~~~~f~~~~~~~~~~~~~Ev~~~~W~~~~el~~~~~~~-----~~~~~p~~~~~ 157 (158)
T TIGR02150 90 -LTVLPRFSYRARDAWG--EHELCPVFFARAPVPLNPNPEEVAEYRWVSLEELKEILKAP-----WAGFSPWFRIQ 157 (158)
T ss_pred -eEEcceEEEEEecCCC--cEEEEEEEEEecCCcccCChhHeeeEEEeCHHHHHHHHhcC-----ccccCHhhHHh
Confidence 3345555565433222 35677888887655677787899999999999999999975 57999999875
No 5
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.97 E-value=2.2e-29 Score=197.21 Aligned_cols=140 Identities=46% Similarity=0.790 Sum_probs=116.8
Q ss_pred CCCCC-ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 029829 1 MHKCV-PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP 79 (187)
Q Consensus 1 ~~g~~-h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~ 79 (187)
++|++ |++|+++|+|++|+|||+||+..+..|||.|++++|||+++||+ +++||+||++|||||.+....
T Consensus 24 ~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt---------~~eaa~REl~EEtGl~~~~~~ 94 (165)
T cd02885 24 LKGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEG---------VKDAAQRRLREELGITGDLLE 94 (165)
T ss_pred hcCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCC---------HHHHHHHHHHHHhCCCccchh
Confidence 35777 99999999999999999999998889999999999999999999 899999999999999987543
Q ss_pred CCCeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHH
Q 029829 80 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV 158 (187)
Q Consensus 80 ~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~ 158 (187)
. . ++.+.|..........+.+.++|.+.......++.+|+.+++|++++++.+++.++ ++.+|||++.++
T Consensus 95 ~---~-~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~~~~-----~~~~~~~~~~~~ 164 (165)
T cd02885 95 L---V-LPRFRYRAPDDGGLVEHEIDHVFFARADVTLIPNPDEVSEYRWVSLEDLKELVAAA-----PEAFTPWFRLIL 164 (165)
T ss_pred h---c-cceEEEEEEcCCCceeeEEEEEEEEEeCCCCCCCccceeEEEEECHHHHHHHHHhC-----chhcCHHHHHHh
Confidence 2 1 35666665443344445677888877655556678899999999999999999986 589999999875
No 6
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.97 E-value=4.4e-29 Score=198.96 Aligned_cols=143 Identities=29% Similarity=0.456 Sum_probs=118.2
Q ss_pred CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829 2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81 (187)
Q Consensus 2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~ 81 (187)
+|++|++|+|+|+|++|+|||+||+.++..+||.|++++|||+++||+ +.+||+||+.|||||++....
T Consensus 30 ~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt---------~~~aa~REl~EEtGl~~~~~~-- 98 (184)
T PRK03759 30 DTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGES---------LEDAVIRRCREELGVEITDLE-- 98 (184)
T ss_pred CCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCC---------HHHHHHHHHHHHhCCCccccc--
Confidence 689999999999999999999999988889999999999999999999 899999999999999886432
Q ss_pred CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829 82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 161 (187)
Q Consensus 82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~ 161 (187)
..++.+.|.....++...++++++|.+.....+.++++|+.+++|++++++.+++.++ +..++||+++++.++
T Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~~~~~Ev~~~~W~~~~el~~~i~~~-----~~~~~~~l~~~~~~~ 171 (184)
T PRK03759 99 --LVLPDFRYRATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQWVDPADLLRAVDAT-----PWAFSPWMVLQAANL 171 (184)
T ss_pred --cccceEEEEEecCCCceeeEEEEEEEEEECCCCCCChhHeeeEEEECHHHHHHHHHhC-----CcccChHHHHHHHHh
Confidence 1244444543332333345677888887655667788899999999999999999986 579999999988765
Q ss_pred H
Q 029829 162 L 162 (187)
Q Consensus 162 l 162 (187)
.
T Consensus 172 ~ 172 (184)
T PRK03759 172 E 172 (184)
T ss_pred c
Confidence 3
No 7
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.96 E-value=3.8e-29 Score=198.30 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=119.5
Q ss_pred CCCCCceEEEEE--EEeCC--CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 029829 1 MHKCVPNIFSIL--GFVSY--SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 76 (187)
Q Consensus 1 ~~g~~h~av~v~--i~~~~--g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~ 76 (187)
.+|++|++|+|+ ++|++ ++||+||||.+|.+|||+|++++|||+++||+ +.+||+||++|||||++.
T Consensus 27 ~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~---------~~~aA~REl~EE~Gl~~~ 97 (180)
T cd03676 27 LFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEG---------PEETLVKECDEEAGLPED 97 (180)
T ss_pred cCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCC---------HHHHHHHHHHHHhCCCHH
Confidence 369999999976 55765 89999999999999999999999999999999 899999999999999887
Q ss_pred CCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEecC--CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhH
Q 029829 77 DVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWF 154 (187)
Q Consensus 77 ~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~ 154 (187)
... .+.+++.+.|.+...+....++++|+|.+..+ ..+.++++|+.++.|++++++.+++..+ .|+||+
T Consensus 98 ~~~--~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g-------~~~~~~ 168 (180)
T cd03676 98 LVR--QLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEG-------EFKPNC 168 (180)
T ss_pred HHh--hceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcC-------CCCccc
Confidence 543 14556766666542222334678888877643 3456788999999999999999999975 799999
Q ss_pred HHHHHHHHHH
Q 029829 155 RLVVDNFLFK 164 (187)
Q Consensus 155 ~~~~~~~l~~ 164 (187)
.++.-+||.+
T Consensus 169 ~lv~~~~~~~ 178 (180)
T cd03676 169 ALVTLDFLIR 178 (180)
T ss_pred HhHHHHHHhh
Confidence 9999988764
No 8
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.95 E-value=1.6e-27 Score=182.45 Aligned_cols=135 Identities=21% Similarity=0.246 Sum_probs=108.3
Q ss_pred CceEEEEEEEeCC---CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829 5 VPNIFSILGFVSY---SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81 (187)
Q Consensus 5 ~h~av~v~i~~~~---g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~ 81 (187)
+||+|+|+|+|.+ ++||+|+|+..+..+||.|++++|||+++||+ +.+||+||+.|||||.+...
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt---------~~~aa~REl~EEtGl~~~~~--- 68 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGET---------PLEDGIRELEEELGLDVSAD--- 68 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCC---------HHHHHHHHHHHHhCCCCChH---
Confidence 6999999999988 89999999998889999999988999999999 89999999999999987532
Q ss_pred CeeeeeEEEEEccCCCCcceeEEEEEEEEecC---CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHH
Q 029829 82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 156 (187)
Q Consensus 82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~---~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~ 156 (187)
.+.+++.+.+..........+.++++|++... ..+.++++|+.+++|++++++.+++..+ +.+|+||+-.
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~-----~~~~~~~~~~ 141 (144)
T cd04692 69 DLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEEE-----DHKYQYYDGE 141 (144)
T ss_pred HeEEeeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHcC-----CCCCCccccc
Confidence 34567776655431112222446667776542 3456777899999999999999999887 5899999753
No 9
>PLN02791 Nudix hydrolase homolog
Probab=99.94 E-value=2e-26 Score=215.06 Aligned_cols=143 Identities=22% Similarity=0.313 Sum_probs=116.9
Q ss_pred CCCCceEEEEEEEeC-CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCC
Q 029829 2 HKCVPNIFSILGFVS-YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 80 (187)
Q Consensus 2 ~g~~h~av~v~i~~~-~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~ 80 (187)
+|++|++|+|+|+|. +|+|||||||..|.+|||+|+++||||+++||+ +.+||+||+.||+||.+..
T Consensus 28 ~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs---------~~eAA~REL~EELGI~l~~--- 95 (770)
T PLN02791 28 DGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDT---------SLLSAQRELEEELGIILPK--- 95 (770)
T ss_pred CCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCC---------HHHHHHHHHHHHhCCCCCh---
Confidence 689999999999996 699999999999999999999999999999999 7899999999999998632
Q ss_pred CCeeeeeEEEEEcc-CCCCcceeEEEEEEEEecC-----CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChh-
Q 029829 81 DEFTPLGRILYKAP-SDGKWGEHELDYLLFIVRD-----VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPW- 153 (187)
Q Consensus 81 ~~l~~~~~~~y~~~-~~~~~~e~e~~~vf~~~~~-----~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~- 153 (187)
..+.+++.+.+... ..+.+.+++++++|++... .++.+|++||++++|++++|+.+++... +..|+||
T Consensus 96 ~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~~~-----~~~fvP~~ 170 (770)
T PLN02791 96 DAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALAKE-----DPAYVPYD 170 (770)
T ss_pred hheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHhcC-----CCceeecc
Confidence 23566776555432 2234567899999987631 2467889999999999999999999875 4678887
Q ss_pred --------HHHHHHHH
Q 029829 154 --------FRLVVDNF 161 (187)
Q Consensus 154 --------~~~~~~~~ 161 (187)
+..+.++|
T Consensus 171 ~~~~~~~~f~~i~~~~ 186 (770)
T PLN02791 171 VNGEYGQLFSIIEKRY 186 (770)
T ss_pred ccchHHHHHHHHHHHH
Confidence 55555555
No 10
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.92 E-value=2.9e-24 Score=170.81 Aligned_cols=136 Identities=17% Similarity=0.138 Sum_probs=108.5
Q ss_pred CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829 2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81 (187)
Q Consensus 2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~ 81 (187)
+|+.|+++.++|+|++|+|||++|+..+..+||+|+.++|||+++||+ +.+||+|||+|||||.+...
T Consensus 33 ~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs---------~~eAA~REL~EEtGl~~~~~--- 100 (180)
T PRK15393 33 QCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ---------LLESARREAEEELGIAGVPF--- 100 (180)
T ss_pred CCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCC---------HHHHHHHHHHHHHCCCCccc---
Confidence 689999999999999999999999988778899999888999999999 89999999999999986542
Q ss_pred CeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829 82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 161 (187)
Q Consensus 82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~ 161 (187)
..++.+.|.... . ..++++|.+.......++++|+.+++|++++++.+++. .|+|.....+..|
T Consensus 101 --~~~~~~~~~~~~----~-~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~---------~~~~~~~~~l~~~ 164 (180)
T PRK15393 101 --AEHGQFYFEDEN----C-RVWGALFSCVSHGPFALQEEEVSEVCWMTPEEITARCD---------EFTPDSLKALALW 164 (180)
T ss_pred --eeceeEEecCCC----c-eEEEEEEEEEeCCCCCCChHHeeEEEECCHHHHhhhhh---------hcCccHHHHHHHH
Confidence 345665444321 1 23445565555556677889999999999999998754 4888888888878
Q ss_pred HHHH
Q 029829 162 LFKW 165 (187)
Q Consensus 162 l~~~ 165 (187)
|.+-
T Consensus 165 l~~~ 168 (180)
T PRK15393 165 LTRN 168 (180)
T ss_pred HHhh
Confidence 5443
No 11
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.92 E-value=1.3e-24 Score=162.79 Aligned_cols=116 Identities=24% Similarity=0.262 Sum_probs=95.7
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
++|+|+++|++|+||||+|+..+..+||+|++++|||+++||+ +.+||+||+.||||+++.. +..+
T Consensus 1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----l~~~ 66 (126)
T cd04697 1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGES---------YLQNAQRELEEELGIDGVQ-----LTPL 66 (126)
T ss_pred CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCC---------HHHHHHHHHHHHHCCCccc-----cEEe
Confidence 5899999999999999999988878999999988999999999 8999999999999998863 3456
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhc
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 141 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~ 141 (187)
+.+.|.... . ....++|.+.....+.++++|+.+++|++++++.+++..+
T Consensus 67 ~~~~~~~~~----~-~~~~~~f~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 116 (126)
T cd04697 67 GLFYYDTDG----N-RVWGKVFSCVYDGPLKLQEEEVEEITWLSINEILQFKEGE 116 (126)
T ss_pred eEEEecCCC----c-eEEEEEEEEEECCCCCCCHhHhhheEEcCHHHHHHHhhcC
Confidence 665553321 1 3345677776555566778899999999999999998875
No 12
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.92 E-value=2.9e-24 Score=160.52 Aligned_cols=124 Identities=24% Similarity=0.368 Sum_probs=97.0
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
++|.++++|++|+|||+||+..+..+||.|++|+|||+++||+ + +||+||++||||+.+.... +..+
T Consensus 1 ~~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~---------~-~aa~REl~EEtGl~~~~~~---~~~~ 67 (127)
T cd04693 1 LVVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGET---------S-TAAEREVKEELGLELDFSE---LRPL 67 (127)
T ss_pred CeEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCC---------H-HHHHHHHHHHhCCCcChhh---cEEE
Confidence 4789999999999999999988888999999999999999999 9 9999999999999986432 3445
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHH
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRL 156 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~ 156 (187)
+.+.|..+ + +...++|.+.. ...+.++.+|+.+++|++++++.+++.++ .++||+..
T Consensus 68 ~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~-------~~~~~~~~ 125 (127)
T cd04693 68 FRYFFEAE---G---FDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHG-------EFTPYFES 125 (127)
T ss_pred EEEEeecC---C---eEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcC-------Cccccccc
Confidence 55433321 1 22234444433 34556777899999999999999999875 68888754
No 13
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.88 E-value=1.2e-21 Score=149.17 Aligned_cols=130 Identities=17% Similarity=0.136 Sum_probs=88.7
Q ss_pred CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829 5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 84 (187)
Q Consensus 5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~ 84 (187)
.+|+|++.+++.+|+|||+||+..+..+||.|++| ||++++||+ +.+||.||+.|||||.+....+....
T Consensus 2 ~~r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~~~~~ 71 (141)
T PRK15472 2 RQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALS-GGGVEPGER---------IEEALRREIREELGEQLLLTEITPWT 71 (141)
T ss_pred cceeEEEEEEecCCEEEEEEecccCCCCCCceeCC-cccCCCCCC---------HHHHHHHHHHHHHCCceeeeeecccc
Confidence 57899999998899999999998777899999998 589999999 89999999999999987532211111
Q ss_pred eeeEEEE-EccCCCCcceeEEEE---EEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829 85 PLGRILY-KAPSDGKWGEHELDY---LLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD 159 (187)
Q Consensus 85 ~~~~~~y-~~~~~~~~~e~e~~~---vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~ 159 (187)
+.+...+ .++. +.. ....+ +|.+.. +..+.++ +|+.+++|++++++.++ .+.|..+.++.
T Consensus 72 ~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~-~E~~~~~w~~~~el~~l-----------~~~~~~~~~~~ 136 (141)
T PRK15472 72 FRDDIRTKTYAD--GRK-EEIYMIYLIFDCVSANRDVKIN-EEFQDYAWVKPEDLVHY-----------DLNVATRKTLR 136 (141)
T ss_pred ccccceeEEecC--CCc-eeEEEEEEEEEeecCCCcccCC-hhhheEEEccHHHhccc-----------cccHHHHHHHH
Confidence 1111111 1111 111 12222 233333 3344444 79999999999999865 46666666554
No 14
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.86 E-value=1.6e-20 Score=144.02 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=92.9
Q ss_pred CCCCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829 2 HKCVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81 (187)
Q Consensus 2 ~g~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~ 81 (187)
.-..+.+|+++++|.+|+|||+||+. .||.|++| |||+++||+ +.+||+||++|||||.+....+
T Consensus 3 ~~~~~~~v~~vi~~~~~~vLl~~r~~----~~~~W~lP-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~- 67 (148)
T PRK09438 3 PYKRPVSVLVVIYTPDLGVLMLQRAD----DPDFWQSV-TGSLEEGET---------PAQTAIREVKEETGIDVLAEQL- 67 (148)
T ss_pred CccCceEEEEEEEeCCCeEEEEEecC----CCCcEeCC-cccCCCCCC---------HHHHHHHHHHHHhCcCccccce-
Confidence 34466799999999999999998864 37899987 689999999 8999999999999998832111
Q ss_pred Ceeeee---EEEEEc------cCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccCh
Q 029829 82 EFTPLG---RILYKA------PSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSP 152 (187)
Q Consensus 82 ~l~~~~---~~~y~~------~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p 152 (187)
..++ ...|.. ....+.. +..+++|++.......++.+|+.+++|++++++.++ .+.|
T Consensus 68 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~-----------~~~~ 133 (148)
T PRK09438 68 --TLIDCQRSIEYEIFPHWRHRYAPGVT-RNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAAL-----------TKSW 133 (148)
T ss_pred --eecccccccccccchhhhhccccccC-CceeEEEEEecCCCCccccCcccceeeCCHHHHHHH-----------hcCh
Confidence 1111 111111 0111222 456678887653333344569999999999999986 4567
Q ss_pred hHHHHHHHHHH
Q 029829 153 WFRLVVDNFLF 163 (187)
Q Consensus 153 ~~~~~~~~~l~ 163 (187)
..+.+++.++.
T Consensus 134 ~~~~~l~~~~~ 144 (148)
T PRK09438 134 SNAEAIEQLVI 144 (148)
T ss_pred hHHHHHHHHHH
Confidence 77888877643
No 15
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=9.9e-20 Score=139.95 Aligned_cols=124 Identities=20% Similarity=0.301 Sum_probs=90.9
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
.+|+|+++|.+|+|||+||+..+..|||+|++| |||+++||+ +.+||+||+.||+|+.+..... ..+++
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~---------~~~aa~RE~~EE~gi~~~~~~~-~~~~l 70 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPP-GGHVELGEN---------LLEAGLRELNEETGLTLDPIDK-SWQVL 70 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECc-ccccCCCCC---------HHHHHHHHHHHHHCCCcccccc-ceeEE
Confidence 478999999999999999998777899999998 699999998 8999999999999998864321 12445
Q ss_pred eEEEEEccC--CCCc--ceeEEEEEEEEecC------CcCCCCccccceEEEecHHHHHHHHHhc
Q 029829 87 GRILYKAPS--DGKW--GEHELDYLLFIVRD------VSVNPNPDEVAEYKYVNREQLKELLRKA 141 (187)
Q Consensus 87 ~~~~y~~~~--~~~~--~e~e~~~vf~~~~~------~~~~~~~~Ev~~~~Wv~~~el~~~l~~~ 141 (187)
+.+.+..+. ..+. .++...|++..... ..+.++++|+.+++|++++++.+++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~ 135 (143)
T cd04694 71 GLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAE 135 (143)
T ss_pred eeeccccccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhh
Confidence 544333221 1111 22334454443321 1345777999999999999999999875
No 16
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.84 E-value=1.4e-20 Score=139.79 Aligned_cols=120 Identities=25% Similarity=0.334 Sum_probs=92.0
Q ss_pred CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829 5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 84 (187)
Q Consensus 5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~ 84 (187)
+|++|+++|++.+|+|||+||+.....++|.|.+| ||+++++|+ +.+||+||+.||||+.+... .
T Consensus 1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~p-gG~i~~~E~---------~~~aa~REl~EE~g~~~~~~-----~ 65 (134)
T PF00293_consen 1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELP-GGGIEPGES---------PEEAARRELKEETGLDVSPL-----E 65 (134)
T ss_dssp EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESS-EEEECTTSH---------HHHHHHHHHHHHHSEEEEEE-----E
T ss_pred CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecc-eeeEEcCCc---------hhhhHHhhhhhcccceeccc-----c
Confidence 58999999999999999999998776789999996 799999998 89999999999999998432 3
Q ss_pred eeeEEEEEccCCCCcceeEEEEEEEEe--cC-CcCCCCccccceEEEecHHHHHHHHHhc
Q 029829 85 PLGRILYKAPSDGKWGEHELDYLLFIV--RD-VSVNPNPDEVAEYKYVNREQLKELLRKA 141 (187)
Q Consensus 85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~--~~-~~~~~~~~Ev~~~~Wv~~~el~~~l~~~ 141 (187)
..+.+.|........ ....++|.+. .+ ....++.+|+.++.|++++++.++....
T Consensus 66 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 123 (134)
T PF00293_consen 66 LLGLFSYPSPSGDPE--GEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNG 123 (134)
T ss_dssp EEEEEEEEETTTESS--EEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTT
T ss_pred cceeeeecccCCCcc--cEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCc
Confidence 455555665543221 2233333333 22 2455565699999999999999988764
No 17
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.84 E-value=2.4e-20 Score=144.95 Aligned_cols=113 Identities=19% Similarity=0.043 Sum_probs=85.1
Q ss_pred CceEEEEEEEeCC--CeEEEEEecCCCCCCCCceeeccccCCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829 5 VPNIFSILGFVSY--SVMSGQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81 (187)
Q Consensus 5 ~h~av~v~i~~~~--g~vLL~rRs~~k~~~pG~W~~~~gGhve~g-Es~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~ 81 (187)
+|.||.|++++.+ ++|||+||+..+..+||.|++| ||++++| |+ +.+||+||++||||+++...
T Consensus 1 ~~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lP-GG~ve~gdEs---------~~eaa~REl~EEtGl~~~~~--- 67 (157)
T cd03426 1 RRAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFP-GGKVDPGDED---------PVATALREAEEEIGLPPDSV--- 67 (157)
T ss_pred CceEEEEEEEeCCCceEEEEEEcccccccCCCcEECC-CCCcCCCcCC---------HHHHHHHHHHHHhCCCccce---
Confidence 4789999999876 5899999998877899999997 7999999 99 89999999999999988643
Q ss_pred CeeeeeEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHH
Q 029829 82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
.+++.+....... ....++|++.. +..+.++++|+.+++|++++++.+.
T Consensus 68 --~~l~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 68 --EVLGRLPPYYTRS-----GFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred --EEEEECCCccccC-----CCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 3454432111111 11233344433 2356778889999999999999864
No 18
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=5.4e-20 Score=136.59 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=83.0
Q ss_pred ceEEEEEEEeCCCeEEEEEecCC-CCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829 6 PNIFSILGFVSYSVMSGQQRSGT-KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 84 (187)
Q Consensus 6 h~av~v~i~~~~g~vLL~rRs~~-k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~ 84 (187)
|.++++++.++ |+|||+||+.. +..|||+|++| ||+++.||+ +.+||.||+.||||+.+....+ .
T Consensus 1 ~~v~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~~~---~ 66 (122)
T cd04682 1 SGVALALLIGD-GRLLLQLRDDKPGIPYPGHWDLP-GGHREGGET---------PLECVLRELLEEIGLTLPESRI---P 66 (122)
T ss_pred CceEEEEEEcC-CEEEEEEccCCCCCCCCCcEeCC-CccccCCCC---------HHHHHHHHHHHHhCCccccccc---c
Confidence 56777777776 99999999876 67899999997 799999999 8999999999999999864321 1
Q ss_pred eeeEEEEEccCCCCcceeEEEEEEEEecC-C-cCCCCccccceEEEecHHHHHHH
Q 029829 85 PLGRILYKAPSDGKWGEHELDYLLFIVRD-V-SVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~-~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
.. ..|.... .....++|.+... . ....+.+|+.+++|++++++.+.
T Consensus 67 ~~--~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 67 WF--RVYPSAS-----PPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred ee--EecccCC-----CCceEEEEEEEEecCCCccccCchhheeecccHHHHhhc
Confidence 22 2233221 1335566666542 2 24567799999999999999765
No 19
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=8.9e-20 Score=136.28 Aligned_cols=128 Identities=19% Similarity=0.154 Sum_probs=89.7
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
.+|.++|++++|++||++|+... ++|.|++| ||++++||+ +.+||.||+.||||+++... .++
T Consensus 2 ~av~~~i~~~~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~~ 64 (130)
T cd04681 2 AAVGVLILNEDGELLVVRRAREP--GKGTLDLP-GGFVDPGES---------AEEALIREIREETGLKVTEL-----SYL 64 (130)
T ss_pred ceEEEEEEcCCCcEEEEEecCCC--CCCcEeCC-ceeecCCCC---------HHHHHHHHHHHHhCCcccce-----eEE
Confidence 37899999999999999998643 68999997 799999999 89999999999999988643 345
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 162 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l 162 (187)
+.+....+.. +...+.+.++|.+... .....+.+|+.+++|++++++.. . ....|..+..++.||
T Consensus 65 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~---~-------~~~~~~~~~~~~~~~ 130 (130)
T cd04681 65 FSLPNTYPYG-GMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIEL---E-------NFAFPSIRQAVERWL 130 (130)
T ss_pred EeecceeeeC-CceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHCCc---c-------cCCcHHHHHHHHhhC
Confidence 5443222222 2222334445555543 33455678999999999999852 1 122255666666653
No 20
>PLN02839 nudix hydrolase
Probab=99.83 E-value=1.4e-19 Score=156.43 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=117.9
Q ss_pred CCCceEEEEEEEe---CCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 029829 3 KCVPNIFSILGFV---SYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP 79 (187)
Q Consensus 3 g~~h~av~v~i~~---~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~ 79 (187)
|..-.+|++-.+. .++++|++|||.+|.+|||+||+.++|++..||+ +.++++||+.||.||+...++
T Consensus 200 Gi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGes---------p~etliREa~EEAgLp~~l~~ 270 (372)
T PLN02839 200 GIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGIS---------CGENLVKECEEEAGISKAIAD 270 (372)
T ss_pred CceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCC---------HHHHHHHHHHHHcCCCHHHHh
Confidence 5556677776553 2347999999999999999999999999999999 899999999999999876442
Q ss_pred CCCeeeeeEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHH
Q 029829 80 VDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLV 157 (187)
Q Consensus 80 ~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~ 157 (187)
.+...|.+.|......+.. ++..|+|.... +..+.++++||+++.+++++|+.+.+.++ +.|+|.+..+
T Consensus 271 --~~~~~G~VsY~~~~~~g~~-~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~~------~~fKpn~aLV 341 (372)
T PLN02839 271 --RAIAVGAVSYMDIDQYCFK-RDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRKT------SFFKANCSLV 341 (372)
T ss_pred --cceEeEEEEEEEEcCCccc-cCEEEEeeeecCCccccCCCccceeEEEEecHHHHHHHHHcC------CCCCcccHHH
Confidence 4678899988855443332 55667776664 34567889999999999999999999875 4699999999
Q ss_pred HHHHHHHH
Q 029829 158 VDNFLFKW 165 (187)
Q Consensus 158 ~~~~l~~~ 165 (187)
+-+||.+.
T Consensus 342 iiDFLiRh 349 (372)
T PLN02839 342 IIDFLFRH 349 (372)
T ss_pred HHHHHHHc
Confidence 99998876
No 21
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=3.5e-19 Score=132.64 Aligned_cols=111 Identities=16% Similarity=0.191 Sum_probs=79.4
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
.+++++|++.+|+|||+||.. ++|.|++| ||++++||+ +.+||+||++||||+++.... ++
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~----~~~~w~lP-GG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~-----~~ 63 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTK----WRGLWGVP-GGKVEWGET---------LEEALKREFREETGLKLRDIK-----FA 63 (125)
T ss_pred cEEEEEEECCCCCEEEEEccC----CCCcEeCC-ceeccCCCC---------HHHHHHHHHHHHhCCcccccc-----eE
Confidence 468888999889999998752 67999997 799999999 899999999999999887543 23
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEecCC-cCCCCccccceEEEecHHHHHHH
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~~-~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
+...|..........+.+.++|.+.... .+..+ +|+.+++|++++++.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 64 MVQEAIFSEEFHKPAHFVLFDFFARTDGTEVTPN-EEIVEWEWVTPEEALDY 114 (125)
T ss_pred EEEEEeccCCCCCccEEEEEEEEEEecCCcccCC-cccceeEEECHHHHhcC
Confidence 3322322111111124445566665433 34443 79999999999999864
No 22
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=3.2e-19 Score=132.70 Aligned_cols=114 Identities=13% Similarity=0.059 Sum_probs=84.7
Q ss_pred ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829 6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 85 (187)
Q Consensus 6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~ 85 (187)
|.+++++|++.+|+|||++|+.. ..+|.|++| |||+++||+ +.+||+||++||||+.+... .+
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~eaa~RE~~EEtGl~~~~~-----~~ 64 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRA--PEAGHWGIP-GGKVDWMEA---------VEDAVVREIEEETGLSIHST-----RL 64 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCC--CCCCeEeCC-eeeccCCCC---------HHHHHHHHHHHHHCCCcccc-----eE
Confidence 57899999999999999999753 357999997 799999999 89999999999999998654 33
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEec-CCcC-CCCccccceEEEecHHHHHHHHH
Q 029829 86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLR 139 (187)
Q Consensus 86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~-~~~~~Ev~~~~Wv~~~el~~~l~ 139 (187)
++.+.+..... ..+.+..+|++.. +..+ ..+++|+.+++|++++++.+.+.
T Consensus 65 ~~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 65 LCVVDHIIEEP---PQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred EEEEeecccCC---CCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence 55443322211 1244566676654 2222 34567999999999999986543
No 23
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.82 E-value=5.6e-19 Score=138.10 Aligned_cols=119 Identities=11% Similarity=0.022 Sum_probs=85.3
Q ss_pred CCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829 4 CVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83 (187)
Q Consensus 4 ~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l 83 (187)
..+.+|.++|++.+|+|||+||+.. .++|.|++| ||++++||+ +++||+||++|||||.+.... .
T Consensus 15 ~~~~~v~~vI~~~~g~VLL~kR~~~--~~~g~W~lP-GG~VE~GEt---------~~~Aa~REl~EEtGl~v~~~~---~ 79 (159)
T PRK15434 15 TPLISLDFIVENSRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDET---------LEAAFERLTMAELGLRLPITA---G 79 (159)
T ss_pred CceEEEEEEEECCCCEEEEEEccCC--CCCCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCcccccc---c
Confidence 3456899999998899999999843 478999998 799999999 899999999999999865321 1
Q ss_pred eeeeEEEEEccC---CCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHH
Q 029829 84 TPLGRILYKAPS---DGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 84 ~~~~~~~y~~~~---~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
.+++.+.+.+.. ......+.++++|.+.. ...+.++++|+.+++|++++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 80 QFYGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred eEEEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhc
Confidence 233332222211 11112244556666654 3455666779999999999999864
No 24
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.82 E-value=9.7e-19 Score=131.90 Aligned_cols=116 Identities=18% Similarity=0.097 Sum_probs=88.4
Q ss_pred CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829 5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 84 (187)
Q Consensus 5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~ 84 (187)
.|++|.+++++++|++||.+|.... ..++.|++| ||+++.||+ +.+||+||+.||||+.+.. +.
T Consensus 1 ~~~~v~v~~~~~~~~iLl~~~~~~~-~~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~-----~~ 64 (137)
T cd03424 1 HPDAVAVLPYDDDGKVVLVRQYRPP-VGGWLLELP-AGLIDPGED---------PEEAARRELEEETGYEAGD-----LE 64 (137)
T ss_pred CCCEEEEEEEcCCCeEEEEEeeecC-CCCEEEEeC-CccCCCCCC---------HHHHHHHHHHHHHCCCccc-----eE
Confidence 3789999999999999998765433 367899997 699999999 8999999999999999863 34
Q ss_pred eeeEEEEEccCCCCcceeEEEEEEEEecCCc---CCCCccccceEEEecHHHHHHHHHhc
Q 029829 85 PLGRILYKAPSDGKWGEHELDYLLFIVRDVS---VNPNPDEVAEYKYVNREQLKELLRKA 141 (187)
Q Consensus 85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~---~~~~~~Ev~~~~Wv~~~el~~~l~~~ 141 (187)
.++.+.+.. +.. +...++|++..... +.+++.|+.+++|++++++.+++..+
T Consensus 65 ~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 65 KLGSFYPSP----GFS-DERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred EEeeEecCC----ccc-CccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence 565543321 111 23455666654322 45677899999999999999999975
No 25
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.82 E-value=9e-19 Score=133.05 Aligned_cols=131 Identities=21% Similarity=0.141 Sum_probs=89.4
Q ss_pred CceEEEEEEEeCC-CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829 5 VPNIFSILGFVSY-SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83 (187)
Q Consensus 5 ~h~av~v~i~~~~-g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l 83 (187)
.|.+++++++|.+ ++|||+||+. .|.|.+| |||+++||+ +.+||+||++||||+.+.......+
T Consensus 1 ~~~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~~~~~~ 65 (138)
T cd03674 1 GHFTASAFVVNPDRGKVLLTHHRK-----LGSWLQP-GGHIDPDES---------LLEAALRELREETGIELLGLRPLSV 65 (138)
T ss_pred CcEEEEEEEEeCCCCeEEEEEEcC-----CCcEECC-ceecCCCCC---------HHHHHHHHHHHHHCCCcccceeccc
Confidence 4899999999987 8999998864 4788886 799999999 8999999999999998764322000
Q ss_pred e-eeeEEEEEccCCCC--cceeEEEEEEEEec-CCcCC-CCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHH
Q 029829 84 T-PLGRILYKAPSDGK--WGEHELDYLLFIVR-DVSVN-PNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVV 158 (187)
Q Consensus 84 ~-~~~~~~y~~~~~~~--~~e~e~~~vf~~~~-~~~~~-~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~ 158 (187)
. +. .+......... ...+.++.+|.+.. ...+. ++.+|+.+++|++++++..+ .+.|..+.++
T Consensus 66 ~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-----------~~~~~~~~~i 133 (138)
T cd03674 66 LVDL-DVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASL-----------ELPEDVRRLV 133 (138)
T ss_pred cccc-eeEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhc-----------cCCHHHHHHH
Confidence 0 00 11111111110 11123445676654 23333 36689999999999999753 4677888888
Q ss_pred HHHH
Q 029829 159 DNFL 162 (187)
Q Consensus 159 ~~~l 162 (187)
.+.|
T Consensus 134 ~~~~ 137 (138)
T cd03674 134 EKAL 137 (138)
T ss_pred HHHh
Confidence 8765
No 26
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.81 E-value=9.1e-19 Score=130.21 Aligned_cols=124 Identities=23% Similarity=0.198 Sum_probs=90.0
Q ss_pred eEEEEEEEeCC---CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829 7 NIFSILGFVSY---SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83 (187)
Q Consensus 7 ~av~v~i~~~~---g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l 83 (187)
.++++++++.+ ++|||+||... |.|++| |||+++||+ +.+||.||+.||||+.+...
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~P-gG~v~~gEs---------~~~aa~REl~EEtGl~~~~~----- 61 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLP-KGKLEPGET---------PPEAAVREVEEETGIRAEVG----- 61 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCC-CCccCCCCC---------HHHHHHHHHhhhhCCceEec-----
Confidence 46777787765 89999998643 789987 799999999 89999999999999988754
Q ss_pred eeeeEEEEEccCCCCcceeEEEEEEEEec-CCcCCC-CccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829 84 TPLGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNP-NPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 161 (187)
Q Consensus 84 ~~~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~-~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~ 161 (187)
.+++.+.|..+...... +..+++|.+.. +..+.+ +.+|+.+++|++++++.+++. .|..+.+++.|
T Consensus 62 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~-----------~~~~~~~l~~~ 129 (131)
T cd03673 62 DPLGTIRYWFSSSGKRV-HKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLS-----------YPNDRELLRAA 129 (131)
T ss_pred ceEEEEEEeccCCCCCc-ceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcC-----------CHhHHHHHHHh
Confidence 34666666654322222 44556666654 333333 568999999999999987633 35666766665
Q ss_pred H
Q 029829 162 L 162 (187)
Q Consensus 162 l 162 (187)
+
T Consensus 130 ~ 130 (131)
T cd03673 130 L 130 (131)
T ss_pred h
Confidence 3
No 27
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.81 E-value=7.7e-19 Score=134.77 Aligned_cols=116 Identities=13% Similarity=0.046 Sum_probs=84.0
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
.+|+++|+|.+|+|||+||... .++|+|.+| ||++++||+ +.+||+||++||||+.+.... ++++
T Consensus 13 v~v~~vI~~~~g~vLl~~R~~~--p~~g~w~lP-GG~ve~gEs---------~~~aa~RE~~EE~Gl~v~~~~---~~~l 77 (144)
T cd03430 13 VSIDLIVENEDGQYLLGKRTNR--PAQGYWFVP-GGRIRKNET---------LTEAFERIAKDELGLEFLISD---AELL 77 (144)
T ss_pred EEEEEEEEeCCCeEEEEEccCC--CCCCcEECC-CceecCCCC---------HHHHHHHHHHHHHCCCccccc---ceEE
Confidence 4889999999999999999753 479999998 799999999 899999999999999886431 2345
Q ss_pred eEEEEEccC---CCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHH
Q 029829 87 GRILYKAPS---DGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 87 ~~~~y~~~~---~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
+.+.+.... ..+...+.+..+|.+.. ...+..+++|+.+++|++++++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 78 GVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred EEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcC
Confidence 544322211 11222234445565554 3344556789999999999999853
No 28
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.81 E-value=6.8e-19 Score=130.39 Aligned_cols=112 Identities=15% Similarity=0.038 Sum_probs=82.3
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
++.++++++ |++||+||+... ++|.|.+| ||++++||+ +.+||+||+.||||+.+... .+++
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lP-gG~ve~gE~---------~~~aa~RE~~EEtGl~~~~~-----~~~~ 63 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLP-GGGIEPGES---------PEEALHREVLEETGLTVEIG-----RRLG 63 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHhCcEeecc-----eeee
Confidence 567777776 899999998654 78999997 799999999 89999999999999988653 3455
Q ss_pred EEEEEccCCCC-cceeEEEEEEEEecCCcC---CCCccccceEEEecHHHHHHH
Q 029829 88 RILYKAPSDGK-WGEHELDYLLFIVRDVSV---NPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 88 ~~~y~~~~~~~-~~e~e~~~vf~~~~~~~~---~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
.+.+....... ...+.++++|.+...... ..+.+|..+++|++++++.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 64 SASRYFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred EEEEEEECCCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhcc
Confidence 54433222211 112556778877653222 455678999999999999853
No 29
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.81 E-value=6.2e-19 Score=131.81 Aligned_cols=113 Identities=18% Similarity=0.111 Sum_probs=83.4
Q ss_pred eEEEEEEEeC--CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829 7 NIFSILGFVS--YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 84 (187)
Q Consensus 7 ~av~v~i~~~--~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~ 84 (187)
|.|+|++++. +|+|||+||+.. ++|.|++| |||++.||+ +.+||+||++|||||.+... .
T Consensus 2 ~~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~P-gG~ve~~Es---------~~~aa~RE~~EE~Gl~~~~~-----~ 63 (129)
T cd04664 2 RSVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSV-TGGIEDGES---------PAEAARREVAEETGLDPERL-----T 63 (129)
T ss_pred cEEEEEEEEeCCCCEEEEEEeCCC---CCCccccc-CcccCCCCC---------HHHHHHHHHHHHHCCChhhe-----E
Confidence 6899999998 899999999865 89999986 799999999 89999999999999987543 2
Q ss_pred eeeEEE----EEccCCCCcceeEEEEEEEEecCCc-CCCCccccceEEEecHHHHHHHHHh
Q 029829 85 PLGRIL----YKAPSDGKWGEHELDYLLFIVRDVS-VNPNPDEVAEYKYVNREQLKELLRK 140 (187)
Q Consensus 85 ~~~~~~----y~~~~~~~~~e~e~~~vf~~~~~~~-~~~~~~Ev~~~~Wv~~~el~~~l~~ 140 (187)
.++... |.... .+ .+...++|++..... ....++|+.++.|++++++.+++..
T Consensus 64 ~~~~~~~~~~~~~~~-~~--~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 121 (129)
T cd04664 64 LLDRGASIAFVEFTD-NG--RVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLW 121 (129)
T ss_pred EEeecccccccccCC-Cc--eEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcC
Confidence 233221 11111 11 234557777765322 2345579999999999999987553
No 30
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.80 E-value=1.6e-18 Score=132.48 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=86.0
Q ss_pred ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829 6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 85 (187)
Q Consensus 6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~ 85 (187)
-++|+++|++.+|++||+||... ..+|.|++| ||++++||+ +.+||+||++||||+++... .+
T Consensus 13 ~~av~~vv~~~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~~-----~~ 75 (142)
T cd04700 13 ARAAGAVILNERNDVLLVQEKGG--PKKGLWHIP-SGAVEDGEF---------PQDAAVREACEETGLRVRPV-----KF 75 (142)
T ss_pred eeeEEEEEEeCCCcEEEEEEcCC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHhhCceeecc-----EE
Confidence 46899999998899999887543 358999998 699999999 89999999999999998653 34
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEecC-CcCC-CCccccceEEEecHHHHHHHHHhc
Q 029829 86 LGRILYKAPSDGKWGEHELDYLLFIVRD-VSVN-PNPDEVAEYKYVNREQLKELLRKA 141 (187)
Q Consensus 86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~-~~~~Ev~~~~Wv~~~el~~~l~~~ 141 (187)
++.+.+..+. +. ....++|.+... .... ...+|+.+++|++++++.+++..+
T Consensus 76 ~~~~~~~~~~--~~--~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g 129 (142)
T cd04700 76 LGTYLGRFDD--GV--LVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQG 129 (142)
T ss_pred EEEEEEEcCC--Cc--EEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhccccc
Confidence 6554433321 21 234567777642 2211 224799999999999999998875
No 31
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.79 E-value=1.8e-18 Score=130.24 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=89.1
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
++..+++.++ |++||++|+... ++|.|.+| ||++++||+ +.+||+||+.||||+.+... ..+
T Consensus 2 ~~~~~~i~~~-~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~-----~~~ 63 (137)
T cd03427 2 LTTLCFIKDP-DKVLLLNRKKGP--GWGGWNGP-GGKVEPGET---------PEECAIRELKEETGLTIDNL-----KLV 63 (137)
T ss_pred eEEEEEEEEC-CEEEEEEecCCC--CCCeEeCC-ceeCCCCCC---------HHHHHHHHHHHhhCeEeecc-----eEE
Confidence 4556666665 899999998764 78999987 799999998 89999999999999988754 346
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 162 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l 162 (187)
+.+.+..+.. ..+...++|.+... ..+. +.+|..+++|++++++.+. .+.|..+.+++.|+
T Consensus 64 ~~~~~~~~~~---~~~~~~~~f~~~~~~~~~~-~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~ 125 (137)
T cd03427 64 GIIKFPFPGE---EERYGVFVFLATEFEGEPL-KESEEGILDWFDIDDLPLL-----------PMWPGDREWLPLML 125 (137)
T ss_pred EEEEEEcCCC---CcEEEEEEEEECCcccccC-CCCccccceEEcHhhcccc-----------cCCCCcHHHHHHHh
Confidence 6665554321 22456677777643 2233 3456688999999998754 34556667777664
No 32
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.2e-18 Score=127.07 Aligned_cols=113 Identities=18% Similarity=0.178 Sum_probs=81.1
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
+|+++|++ +|+|||+||+..+ .++|.|++| ||++++||+ +.+||+||+.||||+.+... .+.+++
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~-~~~~~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~v~~~---~~~~~~ 66 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTG-YMDGQWALP-AGHLEKGED---------AVTAAVREAREEIGVTLDPE---DLRLAH 66 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCC-CCCCeEeCC-ccccCCCCC---------HHHHHHHHHHHHHCCccChh---heEEEE
Confidence 57777777 4899999998654 358999998 799999999 89999999999999987632 234565
Q ss_pred EEEEEccCCCCcceeEEEEEEEEec-CCcC-CCCccccceEEEecHHHHHHHHH
Q 029829 88 RILYKAPSDGKWGEHELDYLLFIVR-DVSV-NPNPDEVAEYKYVNREQLKELLR 139 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~-~~~~~Ev~~~~Wv~~~el~~~l~ 139 (187)
.+.+... . ..+.+.++|.+.. ...+ ..+++|+.+++|++++++...+.
T Consensus 67 ~~~~~~~--~--~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 67 TMHRRTE--D--IESRIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred EEEecCC--C--CceEEEEEEEEEeecCccccCCCCcEeeEEEEchHHCcchhc
Confidence 5433321 1 1134445555543 2323 34567999999999999987654
No 33
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.1e-18 Score=128.77 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=86.2
Q ss_pred ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829 6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 85 (187)
Q Consensus 6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~ 85 (187)
+.+|+++|+|.+|+|||+||+.. .++|.|.+| |||+++||+ +.+||+||++||||+++... ..
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~--~~~~~w~~P-GG~ve~gEt---------~~~Aa~REl~EE~Gl~~~~~-----~~ 64 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGS--HGAGTWALP-GGHLEFGES---------FEECAAREVLEETGLHIENV-----QF 64 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCcccce-----EE
Confidence 46899999999999999999864 478999997 799999999 89999999999999988643 34
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEecC-CcCC---CCccccceEEEecHHHHHHHHHhccCCCCCcccChh
Q 029829 86 LGRILYKAPSDGKWGEHELDYLLFIVRD-VSVN---PNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPW 153 (187)
Q Consensus 86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~---~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~ 153 (187)
++.+...... . ..+.+..+|.+... .... .+.+|+.+++|++++++.++ +..|+|.
T Consensus 65 ~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~---------~~~~~~~ 124 (129)
T cd04678 65 LTVTNDVFEE-E--GKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV---------DPLFLPL 124 (129)
T ss_pred EEEEeEEeCC-C--CcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc---------chhhHHH
Confidence 4443222211 1 11334455555542 2222 25678999999999999975 2467773
No 34
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.79 E-value=5.9e-18 Score=129.87 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=80.9
Q ss_pred CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829 5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 84 (187)
Q Consensus 5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~ 84 (187)
+|.+|+++++|.+|++||+||+..+ |.|++| ||++++||+ +.+||.||+.||||+.+....
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~P-gG~~e~gE~---------~~~aA~REv~EEtGl~~~~~~----- 62 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTP----GAWQFP-QGGIDEGED---------PEQAALRELEEETGLDPDSVE----- 62 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCC----CCEECC-cCCCCCCcC---------HHHHHHHHHHHHHCCCcCceE-----
Confidence 5679999999999999999998654 899997 688999999 899999999999999986532
Q ss_pred eeeE----EEEEccCC---CCc---ceeEEEEEEEEec---CCcCCCC---ccccceEEEecHHHHHHHH
Q 029829 85 PLGR----ILYKAPSD---GKW---GEHELDYLLFIVR---DVSVNPN---PDEVAEYKYVNREQLKELL 138 (187)
Q Consensus 85 ~~~~----~~y~~~~~---~~~---~e~e~~~vf~~~~---~~~~~~~---~~Ev~~~~Wv~~~el~~~l 138 (187)
.++. +.|..+.. ..+ ......++|++.. ...+.++ ++|+.+++|++++++.+++
T Consensus 63 ~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~ 132 (147)
T cd03671 63 IIAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLI 132 (147)
T ss_pred EEEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhc
Confidence 2332 33443321 000 0122334444432 1233333 5799999999999999763
No 35
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=3.5e-18 Score=125.72 Aligned_cols=111 Identities=17% Similarity=0.112 Sum_probs=81.6
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
+|+++|+++ |++||+||+.. .++|.|.+| |||+++||+ +.+||+||++||||+.+... .+++
T Consensus 2 ~v~~ii~~~-~~vLl~~r~~~--~~~~~w~~P-gG~ie~gE~---------~~~aa~RE~~EEtGl~~~~~-----~~~~ 63 (122)
T cd04673 2 AVGAVVFRG-GRVLLVRRANP--PDAGLWSFP-GGKVELGET---------LEQAALRELLEETGLEAEVG-----RLLT 63 (122)
T ss_pred cEEEEEEEC-CEEEEEEEcCC--CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHhhCcEeeec-----eeEE
Confidence 567777875 89999998753 478999987 799999999 89999999999999998643 3455
Q ss_pred EEEEEccCCC-CcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHH
Q 029829 88 RILYKAPSDG-KWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 88 ~~~y~~~~~~-~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
.+.+..+..+ ....+.++++|.+... ..+ .+.+|+.+++|++++++.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 64 VVDVIERDAAGRVEFHYVLIDFLCRYLGGEP-VAGDDALDARWVPLDELAAL 114 (122)
T ss_pred EEEEeeccCCCccceEEEEEEEEEEeCCCcc-cCCcccceeEEECHHHHhhC
Confidence 5554443221 1222446666776653 333 44589999999999999875
No 36
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.5e-18 Score=126.28 Aligned_cols=105 Identities=19% Similarity=0.109 Sum_probs=79.8
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc-CCCCCCeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE-DVPVDEFTPL 86 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~-~~~~~~l~~~ 86 (187)
+|+++++|.+|++||+||+.. +.|.+| ||++++||+ +.+||+||++||||+.+. .. ..+
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~P-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~~~-----~~~ 61 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-----PGWYLP-GGGLERGET---------FAEAARRELLEELGIRLAVVA-----ELL 61 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-----CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHHCCcccccc-----ceE
Confidence 688999999999999998643 389987 799999999 899999999999999987 43 345
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHH
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
+.+.+.... .+...++|.+... .....+.+|+.+++|++++++.++
T Consensus 62 ~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 62 GVYYHSASG-----SWDHVIVFRARADTQPVIRPSHEISEARFFPPDALPEP 108 (120)
T ss_pred EEEecCCCC-----CceEEEEEEecccCCCccCCcccEEEEEEECHHHCccc
Confidence 554443221 1335577777653 232556689999999999999753
No 37
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=3.4e-18 Score=126.45 Aligned_cols=110 Identities=20% Similarity=0.147 Sum_probs=78.7
Q ss_pred ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829 6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 85 (187)
Q Consensus 6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~ 85 (187)
|.++++++ ++ |+|||+||+..+..+||+|++| ||++++||+ +.+||+||+.||||+++... .+
T Consensus 1 ~~v~~vi~-~~-~~vLL~rR~~~~~~~~g~w~lP-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~~-----~~ 63 (117)
T cd04691 1 HGVVGVLF-SD-DKVLLERRSLTKNADPGKLNIP-GGHIEAGES---------QEEALLREVQEELGVDPLSY-----TY 63 (117)
T ss_pred CeEEEEEE-EC-CEEEEEEeCCCCCCCCCeEECc-ceeecCCCC---------HHHHHHHHHHHHHCCCcccc-----eE
Confidence 34444544 43 8999999987766799999997 799999999 89999999999999986432 34
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHh
Q 029829 86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK 140 (187)
Q Consensus 86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~ 140 (187)
++.+.+ +. . .....++|.+.. +..+ +.+|+.+++|++++++......
T Consensus 64 l~~~~~--~~--~--~~~~~~~~~~~~~~~~~--~~~E~~~~~W~~~~~l~~~~~~ 111 (117)
T cd04691 64 LCSLYH--PT--S--ELQLLHYYVVTFWQGEI--PAQEAAEVHWMTANDIVLASEA 111 (117)
T ss_pred EEEEec--cC--C--CeEEEEEEEEEEecCCC--CcccccccEEcCHHHcchhhhh
Confidence 544322 11 1 123455566553 3332 3479999999999999876554
No 38
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.77 E-value=3.8e-18 Score=128.70 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=80.6
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
+|.+++++.++++||+||+.. .+|.|++| ||++++||+ +.+||.||++|||||.+..+ .+++
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~---~~~~w~lP-gG~ie~gEt---------~~~aA~REl~EEtGl~~~~~-----~~l~ 63 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRF---PPGMYSLL-AGFVEPGES---------LEEAVRREVKEEVGIRVKNI-----RYVG 63 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCC---CCCcCcCC-cccccCCCC---------HHHHHhhhhhhccCceeeee-----EEEe
Confidence 678888888899999998642 27999987 799999999 89999999999999998643 3454
Q ss_pred EEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHH
Q 029829 88 RILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
.+.|..+ +.++++|.+... ..+.++++|+.+++|++++++.++
T Consensus 64 ~~~~~~~-------~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 64 SQPWPFP-------SSLMLGFTAEADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred ecCCCCC-------ceEEEEEEEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence 4322211 234556666543 455667789999999999999997
No 39
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.77 E-value=2e-17 Score=124.25 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=87.6
Q ss_pred EEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeE
Q 029829 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 88 (187)
Q Consensus 9 v~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~ 88 (187)
|++++. .+|++||.||... .++.|.+| ||++++||+ +.+||.||++||||+.+... .+++.
T Consensus 3 v~~ii~-~~~~vLlv~r~~~---~~~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~-----~~~~~ 63 (134)
T cd03675 3 VAAVVE-RDGRFLLVEEETD---GGLVFNQP-AGHLEPGES---------LIEAAVRETLEETGWHVEPT-----ALLGI 63 (134)
T ss_pred EEEEEE-ECCEEEEEEEccC---CCceEECC-CccCCCCCC---------HHHHHHHHHHHHHCcccccc-----eEEEE
Confidence 444544 4689999998654 46899997 799999999 89999999999999998643 23454
Q ss_pred EEEEccCCCCcceeEEEEEEEEecCC-cC-CCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 029829 89 ILYKAPSDGKWGEHELDYLLFIVRDV-SV-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 163 (187)
Q Consensus 89 ~~y~~~~~~~~~e~e~~~vf~~~~~~-~~-~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~ 163 (187)
+.|..+.. .. ....++|.+.... .. ....+|+.++.|++++++.++... ..+|..+.++..||.
T Consensus 64 ~~~~~~~~-~~--~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~--------~~~~~~~~~i~~~l~ 129 (134)
T cd03675 64 YQWTAPDS-DT--TYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAAR--------LRSPLVLRCIEDYLA 129 (134)
T ss_pred EEeecCCC-Ce--eEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhh--------hcCchHHHHHHHHHh
Confidence 44443321 11 2233556555432 12 234468999999999999988652 467888888888863
No 40
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=4.1e-18 Score=127.27 Aligned_cols=114 Identities=24% Similarity=0.303 Sum_probs=80.9
Q ss_pred CCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829 4 CVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83 (187)
Q Consensus 4 ~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l 83 (187)
+.+.++++++++.++++||++|+.. |.|++| ||++++||+ +.+||+||++||||+.+....
T Consensus 5 ~~~~~~~~~v~~~~~~vLL~~r~~~-----~~w~~P-gG~v~~gEt---------~~~aa~REl~EE~Gi~~~~~~---- 65 (132)
T cd04677 5 LILVGAGVILLNEQGEVLLQKRSDT-----GDWGLP-GGAMELGES---------LEETARRELKEETGLEVEELE---- 65 (132)
T ss_pred ccccceEEEEEeCCCCEEEEEecCC-----CcEECC-eeecCCCCC---------HHHHHHHHHHHHhCCeeeeeE----
Confidence 3566888999999899999999743 789987 699999999 899999999999999887543
Q ss_pred eeeeEE----EEEccCCCCcceeEEEEEEEEe-c-CCcCCCCccccceEEEecHHHHHHHHH
Q 029829 84 TPLGRI----LYKAPSDGKWGEHELDYLLFIV-R-DVSVNPNPDEVAEYKYVNREQLKELLR 139 (187)
Q Consensus 84 ~~~~~~----~y~~~~~~~~~e~e~~~vf~~~-~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~ 139 (187)
.++.+ .|..+. ++.. +..+.+|++. . +..+..+.+|+.+++|++++++.+++.
T Consensus 66 -~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~ 124 (132)
T cd04677 66 -LLGVYSGKEFYVKPN-GDDE-QYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELIN 124 (132)
T ss_pred -EEEEecCCceeecCC-CCcE-EEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchh
Confidence 23322 122211 1211 3344334333 2 333456678999999999999987654
No 41
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=1.2e-17 Score=123.76 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=80.3
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
++.++|++.+|++||+||+..+..++|+|++| ||++++||+ +.+||+||+.||||+++..... ++
T Consensus 3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EE~Gl~~~~~~~-----~~ 67 (129)
T cd04699 3 AVAALIVKDVGRILILKRSKDERTAPGKWELP-GGKVEEGET---------FEEALKREVYEETGLTVTPFLR-----YP 67 (129)
T ss_pred eEEEEEECCCCcEEEEEecCCCCCCCCcCcCC-ccCccCCCC---------HHHHHHHHHHHhhCcEEEeeee-----ee
Confidence 57778888779999999987766689999997 799999999 7999999999999998865321 22
Q ss_pred EEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHH
Q 029829 88 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLR 139 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~ 139 (187)
...+.... . ..+...++|.+........+++|+.+++|++++++..+..
T Consensus 68 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~ 116 (129)
T cd04699 68 STVTHEDS--G-VYNVIYLVFVCEALSGAVKLSDEHEEYAWVTLEELAILKA 116 (129)
T ss_pred EEEEEcCC--C-EEEEEEEEEEeeecCCcccCChhheEEEEecHHHhhhhhc
Confidence 22222111 1 1123334555433222333457899999999999965544
No 42
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.76 E-value=2.6e-17 Score=127.94 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=81.7
Q ss_pred CCceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829 4 CVPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83 (187)
Q Consensus 4 ~~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l 83 (187)
-+|.+|+++++|.+|+|||+||+. .||.|++| ||++++||+ +.+||.||+.||||+.+..+
T Consensus 6 ~~~~~v~~~i~~~~g~vLL~~r~~----~~~~w~~P-~G~~~~gE~---------~~~aa~REl~EEtG~~~~~~----- 66 (156)
T PRK00714 6 GYRPNVGIILLNRQGQVFWGRRIG----QGHSWQFP-QGGIDPGET---------PEQAMYRELYEEVGLRPEDV----- 66 (156)
T ss_pred CCCCeEEEEEEecCCEEEEEEEcC----CCCeEECC-cccCCCCcC---------HHHHHHHHHHHHhCCCccce-----
Confidence 367899999999999999999974 26899998 699999999 89999999999999987643
Q ss_pred eeeeE----EEEEccC------CCCcceeEEEEEEEEec---CCcCCC---CccccceEEEecHHHHHHHH
Q 029829 84 TPLGR----ILYKAPS------DGKWGEHELDYLLFIVR---DVSVNP---NPDEVAEYKYVNREQLKELL 138 (187)
Q Consensus 84 ~~~~~----~~y~~~~------~~~~~e~e~~~vf~~~~---~~~~~~---~~~Ev~~~~Wv~~~el~~~l 138 (187)
..++. +.|..+. ..... ....++|++.. ...+.+ +.+|+.+++|++++++.+++
T Consensus 67 ~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~ 136 (156)
T PRK00714 67 EILAETRDWLRYDLPKRLVRRSKGVYR-GQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQV 136 (156)
T ss_pred EEEEEcCCeEEecCcHHHhhccCCccc-CcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhc
Confidence 22333 2343321 11111 12334555543 223333 33699999999999999764
No 43
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=3.8e-17 Score=121.77 Aligned_cols=110 Identities=20% Similarity=0.197 Sum_probs=75.9
Q ss_pred ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829 6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 85 (187)
Q Consensus 6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~ 85 (187)
+.+|+++|+|.+|+|||.||... ++|.|.+| ||++++||+ +.+||+||+.||||+.+.... .
T Consensus 2 ~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt---------~~~aa~RE~~EE~Gl~~~~~~-----~ 63 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNK---TPNGWKLP-GGLVDPGED---------IFDGAVREVLEETGIDTEFVS-----V 63 (127)
T ss_pred eeEEEEEEEcCCCeEEEEEccCC---CCCcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCCcceeE-----E
Confidence 35788899998899999887543 78999997 799999999 899999999999999886432 2
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHH
Q 029829 86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKE 136 (187)
Q Consensus 86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~ 136 (187)
++. .+..+. ......+.+++.+.. +..+.++++|+.+++|++++++.+
T Consensus 64 ~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 64 VGF-RHAHPG--AFGKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred EEE-EecCCC--CcCceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence 322 122211 111111212222221 233456678999999999999964
No 44
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=2e-17 Score=122.09 Aligned_cols=111 Identities=15% Similarity=0.046 Sum_probs=77.4
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
.+|++++++++|++||+||+.. |.|++| ||++++||+ +.+||.||+.||||+++.... .+
T Consensus 3 ~~v~~ii~~~~~~vLl~~r~~~-----~~w~lP-gG~v~~~E~---------~~~aa~REl~EE~Gl~~~~~~-----~~ 62 (129)
T cd04676 3 PGVTAVVRDDEGRVLLIRRSDN-----GLWALP-GGAVEPGES---------PADTAVREVREETGLDVEVTG-----LV 62 (129)
T ss_pred ceEEEEEECCCCeEEEEEecCC-----CcEECC-eeccCCCCC---------HHHHHHHHHHHHhCceeEeeE-----EE
Confidence 4788888898899999999754 899997 699999999 799999999999999876432 22
Q ss_pred eEE---EEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHH
Q 029829 87 GRI---LYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 87 ~~~---~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
+.+ .+.....++...+.+.++|.+.. +.....+.+|..+++|++++++.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 63 GIYTGPVHVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred EEeecccceeecCCCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccc
Confidence 211 01111111111244555666543 3333345678999999999998865
No 45
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=4.5e-17 Score=121.24 Aligned_cols=110 Identities=19% Similarity=0.223 Sum_probs=78.8
Q ss_pred CceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829 5 VPNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 84 (187)
Q Consensus 5 ~h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~ 84 (187)
.||++++++.+ ++|||+||+. .+.|.+| ||++++||+ +.+||.||+.||||+++....
T Consensus 1 ~~~v~~vi~~~--~~vLl~~~~~-----~~~w~lP-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~~----- 58 (126)
T cd04688 1 KVRAAAIIIHN--GKLLVQKNPD-----ETFYRPP-GGGIEFGES---------SEEALIREFKEELGLKIEITR----- 58 (126)
T ss_pred CeEEEEEEEEC--CEEEEEEeCC-----CCeEECC-CccccCCCC---------HHHHHHHHHHHHhCCceecce-----
Confidence 37888888865 5999999864 5789887 699999999 899999999999999886543
Q ss_pred eeeEEEEEccCCCCcceeEEEEEEEEecC-CcCC-------CCccccceEEEecHHHHHHH
Q 029829 85 PLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVN-------PNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~-------~~~~Ev~~~~Wv~~~el~~~ 137 (187)
.++.+.+.....+.. .+.++++|.+... .... .+.+|+.+++|++++++..+
T Consensus 59 ~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 59 LLGVVENIFTYNGKP-GHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred eeEEEEEeeccCCcc-cEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence 344433222222222 2556778877653 2222 24579999999999999843
No 46
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.73 E-value=5.4e-17 Score=121.02 Aligned_cols=111 Identities=19% Similarity=0.115 Sum_probs=78.5
Q ss_pred ceEEEEEEEeCCC---eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829 6 PNIFSILGFVSYS---VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82 (187)
Q Consensus 6 h~av~v~i~~~~g---~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~ 82 (187)
.+++++++++.++ ++||.||+. |.|++| |||+++||+ +.+||+||+.||||+.+.....
T Consensus 2 ~~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~P-gG~ve~gEs---------~~~aa~REl~EEtGl~~~~~~~-- 63 (130)
T cd03428 2 ERSAGAIIYRRLNNEIEYLLLQASY------GHWDFP-KGHVEPGED---------DLEAALRETEEETGITAEQLFI-- 63 (130)
T ss_pred ceEEEEEEEEecCCCceEEEEEccC------CcCcCC-cCCCCCCCC---------HHHHHHHHHHHHHCCChhhhhh--
Confidence 3678888887654 789998874 788887 699999999 8999999999999999876432
Q ss_pred eeeeeEEEEEccCCCCcceeEEEEEEEEecC--CcCCCCccccceEEEecHHHHHHHHH
Q 029829 83 FTPLGRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLR 139 (187)
Q Consensus 83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~l~ 139 (187)
++.+.+...... ...+..+++|.+... ..+.++ +|+.++.|++++++.+++.
T Consensus 64 ---~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~~~ 117 (130)
T cd03428 64 ---VLGFKETLNYQV-RGKLKTVTYFLAELRPDVEVKLS-EEHQDYRWLPYEEALKLLT 117 (130)
T ss_pred ---hccceeEEEccc-cCcceEEEEEEEEeCCCCccccc-cceeeEEeecHHHHHHHcC
Confidence 222222221110 111345566666543 345555 7999999999999988754
No 47
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.72 E-value=1.3e-16 Score=118.55 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=77.9
Q ss_pred ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829 6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 85 (187)
Q Consensus 6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~ 85 (187)
|..|+++|++ +|++||+||.. .+.|.+| ||++++||+ +.+||.||++||||+++... .+
T Consensus 1 ~~~~~~vi~~-~~~vLlv~~~~-----~~~~~lP-GG~ve~gEt---------~~~aa~REl~EEtGl~~~~~-----~~ 59 (125)
T cd04689 1 HLRARAIVRA-GNKVLLARVIG-----QPHYFLP-GGHVEPGET---------AENALRRELQEELGVAVSDG-----RF 59 (125)
T ss_pred CeEEEEEEEe-CCEEEEEEecC-----CCCEECC-CCcCCCCCC---------HHHHHHHHHHHHhCceeecc-----EE
Confidence 5667777775 68999998853 2578887 799999999 89999999999999988743 44
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEecCC----cCCCCccccceEEEecHHHHH
Q 029829 86 LGRILYKAPSDGKWGEHELDYLLFIVRDV----SVNPNPDEVAEYKYVNREQLK 135 (187)
Q Consensus 86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~~----~~~~~~~Ev~~~~Wv~~~el~ 135 (187)
++.+.+.....+.. .+.+.++|.+.... ....+++|+.+++|++++++.
T Consensus 60 l~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 60 LGAIENQWHEKGVR-THEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred EEEEeeeeccCCce-EEEEEEEEEEEcccccccCCccCccceEEEEEccHHHcc
Confidence 66554443332222 25666777776421 123345689999999999964
No 48
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.72 E-value=1.5e-16 Score=117.68 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=82.3
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
.+.++|++.+|++||+||+... .++|+|++| ||++++||+ +.+||.||+.||+|+++... ..++
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~~-~~~g~w~~P-gG~~~~gE~---------~~~a~~Re~~EE~gl~~~~~-----~~~~ 69 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAADA-HMAGKWEFP-GGKIEAGET---------PEQALIRELQEEVGITVQHA-----TLFE 69 (129)
T ss_pred EEEEEEECCCCEEEEEEecCCC-CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCceecc-----eEEE
Confidence 4445566777899999998764 589999998 699999999 78999999999999987542 2355
Q ss_pred EEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHH
Q 029829 88 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNF 161 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~ 161 (187)
.+.+..+. . +...++|.+.. +.. +...|..+++|++++++... .+.+..+.+++.+
T Consensus 70 ~~~~~~~~--~---~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~~l~~~-----------~~p~~~~~~~~~~ 126 (129)
T PRK10776 70 KLEYEFPD--R---HITLWFWLVESWEGE--PWGKEGQPGRWVSQVALNAD-----------EFPPANEPIIAKL 126 (129)
T ss_pred EEEeeCCC--c---EEEEEEEEEEEECCc--cCCccCCccEEecHHHCccC-----------CCCcccHHHHHHH
Confidence 54444432 1 11233444432 222 23457889999999998753 3556566666544
No 49
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.72 E-value=2.9e-16 Score=117.97 Aligned_cols=121 Identities=15% Similarity=0.056 Sum_probs=82.8
Q ss_pred EEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeE
Q 029829 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 88 (187)
Q Consensus 9 v~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~ 88 (187)
+..++++.+|+|||+||+..+ .++|+|++| ||++++||+ +.+|++||+.||||+.+... .+++.
T Consensus 6 ~~~~ii~~~~~vLL~~R~~~~-~~~g~w~~P-gG~ve~gE~---------~~~a~~RE~~EE~Gl~~~~~-----~~~~~ 69 (135)
T PRK10546 6 VVAAIIERDGKILLAQRPAHS-DQAGLWEFA-GGKVEPGES---------QPQALIRELREELGIEATVG-----EYVAS 69 (135)
T ss_pred EEEEEEecCCEEEEEEccCCC-CCCCcEECC-cccCCCCCC---------HHHHHHHHHHHHHCCccccc-----eeEEE
Confidence 333344567899999997654 589999998 799999999 78999999999999997643 23444
Q ss_pred EEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHH
Q 029829 89 ILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLF 163 (187)
Q Consensus 89 ~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~ 163 (187)
+.+..+. . +...++|.+.. .+.+ ...|..+++|++++++..+ .+.|..+.+++.|+.
T Consensus 70 ~~~~~~~--~---~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~-----------~~~~~~~~~l~~~~~ 127 (135)
T PRK10546 70 HQREVSG--R---RIHLHAWHVPDFHGEL--QAHEHQALVWCTPEEALRY-----------PLAPADIPLLEAFMA 127 (135)
T ss_pred EEEecCC--c---EEEEEEEEEEEecCcc--cccccceeEEcCHHHcccC-----------CCCcCcHHHHHHHHH
Confidence 4443321 1 11234444433 2222 2357789999999999864 466767777777743
No 50
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=1e-16 Score=119.90 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=76.9
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
+|++++++.+|+|||+||... .++|.|.+| ||+++.||+ +.+||+||++||||+++.... .++
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~--~~~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtG~~~~~~~-----~~~ 64 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKR--SCRGKWYLP-AGRMEPGET---------IEEAVKREVKEETGLDCEPTT-----LLS 64 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCC--CCCCeEECc-eeecCCCCC---------HHHHHHHHHHHHHCCeeecce-----EEE
Confidence 678889998999999998753 368999998 699999999 899999999999999987542 233
Q ss_pred EEEEEccCCCCcceeEEEEEEEEec-CCcCC---CCccccceEEEecHHHHHH
Q 029829 88 RILYKAPSDGKWGEHELDYLLFIVR-DVSVN---PNPDEVAEYKYVNREQLKE 136 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~---~~~~Ev~~~~Wv~~~el~~ 136 (187)
. +... . +.+.++|.+.. ++.+. .+.+|+.+++|++++++..
T Consensus 65 ~--~~~~-----~-~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~ 109 (123)
T cd04671 65 V--EEQG-----G-SWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPL 109 (123)
T ss_pred E--EccC-----C-eEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCC
Confidence 2 1111 1 34556676654 22222 2346888999999999943
No 51
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.6e-16 Score=116.60 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=78.8
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
.+++++++.+|++||.||+. .|.|.+| ||++++||+ +.+||+||++||||+.+... .+..++
T Consensus 2 ~~~~~v~~~~~~vLl~~r~~-----~~~w~~P-gG~ve~~Es---------~~~aa~REl~EEtGl~~~~~---~~~~~~ 63 (118)
T cd04690 2 IAAALILVRDGRVLLVRKRG-----TDVFYLP-GGKIEAGET---------PLQALIRELSEELGLDLDPD---SLEYLG 63 (118)
T ss_pred eEEEEEEecCCeEEEEEECC-----CCcEECC-CCccCCCCC---------HHHHHHHHHHHHHCCccChh---heEEEE
Confidence 46777888889999988763 3678887 699999999 89999999999999988641 245566
Q ss_pred EEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHH
Q 029829 88 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE 136 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~ 136 (187)
.+.+....... .+...++|.+.....+. ..+|+.+++|++++++..
T Consensus 64 ~~~~~~~~~~~--~~~~~~~f~~~~~~~~~-~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 64 TFRAPAANEPG--VDVRATVYVAELTGEPV-PAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred EEecccccCCC--cEEEEEEEEEcccCCcC-CCchhhccEEecHHHccc
Confidence 65443222111 24566777776544433 347999999999999853
No 52
>PLN02325 nudix hydrolase
Probab=99.71 E-value=1.4e-16 Score=122.26 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=77.7
Q ss_pred ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829 6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 85 (187)
Q Consensus 6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~ 85 (187)
+.++.+++++. |+|||+||+... .-|.|.+| ||+++.||+ +.+||+||++||||+++... ..
T Consensus 9 ~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lP-GG~ve~gEs---------~~~aa~REv~EEtGl~v~~~-----~~ 70 (144)
T PLN02325 9 RVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALP-GGHLEFGES---------FEECAAREVKEETGLEIEKI-----EL 70 (144)
T ss_pred eEEEEEEEEcC-CEEEEEEecCCC--CCCeEECC-ceeCCCCCC---------HHHHHHHHHHHHHCCCCcce-----EE
Confidence 45677777774 799999998642 34889997 799999999 89999999999999998754 33
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEec-CC---cCCCCccccceEEEecHHHHHHH
Q 029829 86 LGRILYKAPSDGKWGEHELDYLLFIVR-DV---SVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~---~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
++.+.+....... ..+.+.++|.+.. +. ....+++|+.+++|++++++...
T Consensus 71 l~~~~~~~~~~~~-~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 71 LTVTNNVFLEEPK-PSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred EEEecceeecCCC-CcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChh
Confidence 5443322211111 1244555555543 22 12345567899999999999864
No 53
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=3.9e-16 Score=117.35 Aligned_cols=104 Identities=20% Similarity=0.166 Sum_probs=71.9
Q ss_pred eCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEcc
Q 029829 15 VSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 94 (187)
Q Consensus 15 ~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~ 94 (187)
+.++++||.||+.. ++|.|.+| ||++++||+ +.+||+||++|||||++..+.. ...+.. .|..+
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~P-gG~ve~gEs---------~~~aa~RE~~EEtGl~~~~~~~--~~~~~~-~~~~~ 74 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHV-AGGVEAGET---------AWQAALRELKEETGISLPELYN--ADYLEQ-FYEAN 74 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECC-cccccCCCC---------HHHHHHHHHHHHhCCCcccccc--ccceee-EeecC
Confidence 45679999999854 78999986 899999999 8999999999999998865321 111211 23321
Q ss_pred CCCCcceeEEEEEEEEec-CC-cCCCCccccceEEEecHHHHHHHHH
Q 029829 95 SDGKWGEHELDYLLFIVR-DV-SVNPNPDEVAEYKYVNREQLKELLR 139 (187)
Q Consensus 95 ~~~~~~e~e~~~vf~~~~-~~-~~~~~~~Ev~~~~Wv~~~el~~~l~ 139 (187)
... ....++|++.. .. .+.++ +|+.+++|++++++.+++.
T Consensus 75 --~~~--~~~~~~f~~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~~~ 116 (131)
T cd04695 75 --DNR--ILMAPVFVGFVPPHQEVVLN-HEHTEYRWCSFAEALELAP 116 (131)
T ss_pred --Cce--EEEEEEEEEEecCCCccccC-chhcccEecCHHHHHHhcC
Confidence 111 23344555543 22 23343 7999999999999998754
No 54
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=2.6e-16 Score=119.43 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=78.4
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
|+|+++++|.+|+|||+||...+..+++.|.+| ||+++.||+ +.+||.||+.||||+.+..+. ..+
T Consensus 1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~P-gG~ve~gE~---------~~~a~~Re~~EE~G~~~~~~~----~~~ 66 (133)
T cd04685 1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTP-GGGVEPGES---------PEQAARRELREETGITVADLG----PPV 66 (133)
T ss_pred CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECC-cCCCCCCCC---------HHHHHHHHHHHHHCCcccccc----ceE
Confidence 689999999999999999876544578899986 689999999 899999999999999983321 123
Q ss_pred eEEE--EEccCCCCcceeEEEEEEEEecC-CcC---C---CCccccceEEEecHHHHHHH
Q 029829 87 GRIL--YKAPSDGKWGEHELDYLLFIVRD-VSV---N---PNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 87 ~~~~--y~~~~~~~~~e~e~~~vf~~~~~-~~~---~---~~~~Ev~~~~Wv~~~el~~~ 137 (187)
+... |.... ... +...++|.+... ..+ . ...+++.+++|++++++.+.
T Consensus 67 ~~~~~~f~~~~--~~~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 67 WRRDAAFTFLG--VDG-RQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEEEEEecC--ccc-eeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 2222 32221 111 234455666532 111 1 11235678999999998864
No 55
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=3.6e-16 Score=116.79 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=75.2
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
.+++++|++ +|+|||+||... .++.|.+| ||++++||+ +++||+||+.||||+.+...++ .
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~~---~~~~~~lP-GG~ve~gEt---------~~~aa~RE~~EEtGl~v~~~~~-----~ 62 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHDD---GGVWYILP-GGGQEPGET---------LEDAAHRECKEEIGIDVEIGPL-----L 62 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEcC---CCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCccccCcE-----E
Confidence 456666666 579999998643 24788887 799999999 8999999999999999875432 2
Q ss_pred eEEEEEccC---CCCcceeEEEEEEEEecC-CcC-----CCCccccceEEEecHHHHHHH
Q 029829 87 GRILYKAPS---DGKWGEHELDYLLFIVRD-VSV-----NPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 87 ~~~~y~~~~---~~~~~e~e~~~vf~~~~~-~~~-----~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
+...|.... ......+.++++|.+... ... ..+ .|..+++|++++++.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 63 FVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPD-PNQIGVEWLKLKELGDI 121 (128)
T ss_pred EEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCC-CCEEeeEEEcHHHhCcc
Confidence 222333211 011223567788877652 211 222 45579999999999765
No 56
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.71 E-value=3.4e-16 Score=114.45 Aligned_cols=107 Identities=20% Similarity=0.173 Sum_probs=79.0
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
++.+++++++|++||+||+..+ .++|+|++| ||+++.+|+ +.+||.||+.||+|+.+... .+++
T Consensus 3 ~~~~~i~~~~~~~Ll~~r~~~~-~~~g~w~~p-~G~~~~~e~---------~~~~a~Re~~EE~g~~~~~~-----~~~~ 66 (124)
T cd03425 3 VVAAIIIDDDGRILIAQRPAGK-HLGGLWEFP-GGKVEPGET---------PEQALVRELREELGIEVEVG-----ELLA 66 (124)
T ss_pred EEEEEEECCCCEEEEEEeCCCC-CCCCeEeCC-CcccCCCCC---------HHHHHHHHHHHhhCcEEecc-----ceEE
Confidence 3455667777999999998766 689999997 699999998 89999999999999987643 3466
Q ss_pred EEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHH
Q 029829 88 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE 136 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~ 136 (187)
.+.+..+. .+...++|.+..... .....|..++.|++++++.+
T Consensus 67 ~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~ 109 (124)
T cd03425 67 TVEHDYPD-----KRVTLHVFLVELWSG-EPQLLEHQELRWVPPEELDD 109 (124)
T ss_pred EEEeeCCC-----CeEEEEEEEEeeeCC-CcccccCceEEEeeHHHccc
Confidence 65555431 133456666654221 12246789999999999975
No 57
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.70 E-value=3.3e-16 Score=120.51 Aligned_cols=132 Identities=12% Similarity=0.047 Sum_probs=84.1
Q ss_pred EEEEEEEeCC-CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 8 IFSILGFVSY-SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 8 av~v~i~~~~-g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
.+++++++.+ |++||+||.. ++.|++| ||++++||+ +.+||+||+.||||+.+.... ..
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lP-GG~ve~gEs---------~~~AA~REl~EETGl~v~~~~-----~~ 62 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFP-KGKINKDED---------DHDCAIREVYEETGFDISKYI-----DK 62 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-----CCCEECC-CccCCCCcC---------HHHHHHHHHHHhhCccceecc-----cc
Confidence 5778888865 6999998752 3589997 799999999 899999999999999876421 11
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEec-C--CcCCC-CccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVR-D--VSVNP-NPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 162 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~-~--~~~~~-~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l 162 (187)
..|..... . ...+++|++.. . ....+ +.+|+.+++|++++++.+++.... ...++-.+ .++..|+
T Consensus 63 --~~~~~~~~---~-~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~----~~~~~~~~-~~~~~~~ 131 (145)
T cd03672 63 --DDYIELII---R-GQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKKI----PGLNSNKF-FMVIPFI 131 (145)
T ss_pred --ceeeeccc---C-CcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhcc----ccccccce-EEEhHHH
Confidence 11222111 1 11233444432 2 22223 347999999999999999987631 12233222 3344566
Q ss_pred HHHHhHhc
Q 029829 163 FKWWDHLE 170 (187)
Q Consensus 163 ~~~~~~~~ 170 (187)
.+..+|+.
T Consensus 132 ~~~~~~~~ 139 (145)
T cd03672 132 KPLKKWIN 139 (145)
T ss_pred HHHHHHHH
Confidence 66655553
No 58
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.69 E-value=4.2e-16 Score=112.84 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=82.7
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
+++++++++.++++||+||+.. ++|+|.+| ||+++.+|+ +.+||+||+.||+|+.+... ...
T Consensus 1 ~~~~~i~~~~~~~ill~kr~~~---~~~~~~~p-~G~~~~~e~---------~~~~a~RE~~EE~Gl~~~~~-----~~~ 62 (123)
T cd02883 1 VAVGAVILDEDGRVLLVRRADS---PGGLWELP-GGGVEPGET---------LEEAAIREVREETGLDVDVL-----RLL 62 (123)
T ss_pred CceEEEEECCCCCEEEEEEcCC---CCCeEeCC-cccccCCCC---------HHHHHHHHHHHhhCccceee-----eEE
Confidence 3678888888899999999876 78999997 699999999 89999999999999987532 234
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEecCCc-C-CCCccccceEEEecHHHHHHH
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVRDVS-V-NPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~~~-~-~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
+.+.|..+. .......++|.+..... . ..+++|+.+.+|++++++.++
T Consensus 63 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~ 112 (123)
T cd02883 63 GVYEVESPD---EGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPAL 112 (123)
T ss_pred EEEEeeccC---CCceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCccc
Confidence 555555432 12245667776665322 2 256689999999999999874
No 59
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=3.2e-16 Score=116.41 Aligned_cols=110 Identities=10% Similarity=-0.012 Sum_probs=75.9
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
..|.++|+++ |++||.+|.. .|.|++| ||++++||+ +.+||+||++||||+.+... .++
T Consensus 3 ~~v~~~i~~~-~~vLL~~~~~-----~~~w~~P-GG~ve~gEs---------~~~aa~REl~EEtG~~~~~~-----~~~ 61 (123)
T cd04672 3 VDVRAAIFKD-GKILLVREKS-----DGLWSLP-GGWADVGLS---------PAENVVKEVKEETGLDVKVR-----KLA 61 (123)
T ss_pred ceEEEEEEEC-CEEEEEEEcC-----CCcEeCC-ccccCCCCC---------HHHHHHHHHHHHhCCeeeEe-----EEE
Confidence 3577788886 8999888764 5889987 799999999 89999999999999987432 223
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHH
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELL 138 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l 138 (187)
+.+.+..........+.+..+|.+.. +..+..+ +|+.+++|++++++.++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~E~~~~~W~~~~el~~l~ 113 (123)
T cd04672 62 AVDDRNKHHPPPQPYQVYKLFFLCEILGGEFKPN-IETSEVGFFALDDLPPLS 113 (123)
T ss_pred EEeccccccCCCCceEEEEEEEEEEecCCcccCC-CceeeeEEECHHHCcccc
Confidence 33211111111122244555666664 3444455 799999999999997754
No 60
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.69 E-value=8.7e-16 Score=114.81 Aligned_cols=113 Identities=17% Similarity=0.080 Sum_probs=77.8
Q ss_pred EEEEEEEeCC---CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCee
Q 029829 8 IFSILGFVSY---SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 84 (187)
Q Consensus 8 av~v~i~~~~---g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~ 84 (187)
++++++++.+ +++||.+|... |.|.+| ||+++.||+ +.+||+||+.||||+..... +.
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~P-gG~ve~~E~---------~~~aa~RE~~EEtG~~~~~~----~~ 62 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRT-----GRWIVP-KGGPEKDES---------PAEAAAREAWEEAGVRGKIG----KR 62 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCC-----CeEECC-CCCcCCCCC---------HHHHHHHHHHHHhCCccccc----ce
Confidence 4566666643 57999887532 889887 699999999 89999999999999987543 14
Q ss_pred eeeEEEEEccCCCCcceeEEEEEEEEecCC-cCCCCccccceEEEecHHHHHHHHHh
Q 029829 85 PLGRILYKAPSDGKWGEHELDYLLFIVRDV-SVNPNPDEVAEYKYVNREQLKELLRK 140 (187)
Q Consensus 85 ~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~-~~~~~~~Ev~~~~Wv~~~el~~~l~~ 140 (187)
+++.+.|..+..+ ...+...++|.+.... .......|..+++|++++++.+++..
T Consensus 63 ~l~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~ 118 (122)
T cd04666 63 PLGRFEYRKRSKN-RPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEE 118 (122)
T ss_pred EEEEEEeeecCCC-CCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCC
Confidence 6777766654321 1113344555555422 22223457889999999999988764
No 61
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.68 E-value=5.4e-16 Score=124.52 Aligned_cols=115 Identities=17% Similarity=0.059 Sum_probs=81.4
Q ss_pred EEEEEEEe--CCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829 8 IFSILGFV--SYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 85 (187)
Q Consensus 8 av~v~i~~--~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~ 85 (187)
++.++.+. .++.+|++||+.....++|.|++| ||+++++|.+ +.+||+||++||||+.+..+ .+
T Consensus 32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~P-GG~~e~~de~--------~~~tA~REl~EEtGl~~~~~-----~~ 97 (190)
T PRK10707 32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFP-GGAVDPTDAS--------LIATALREAQEEVAIPPSAV-----EV 97 (190)
T ss_pred eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcC-CcccCCCccc--------HHHHHHHHHHHHHCCCccce-----EE
Confidence 44444442 345899999998766789999997 6999986532 79999999999999988653 56
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHH
Q 029829 86 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLR 139 (187)
Q Consensus 86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~ 139 (187)
+|.+....... ++ ....++++...+....++++|+.++.|++++++.++..
T Consensus 98 lg~l~~~~~~~-~~--~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~ 148 (190)
T PRK10707 98 IGVLPPVDSST-GY--QVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGR 148 (190)
T ss_pred EEEeeeeeccC-Cc--EEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCccc
Confidence 77764332221 21 22334444433445667889999999999999988753
No 62
>PLN02709 nudix hydrolase
Probab=99.68 E-value=4.8e-16 Score=127.12 Aligned_cols=118 Identities=15% Similarity=0.035 Sum_probs=85.0
Q ss_pred CCCceEEEEEEEeC------CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 029829 3 KCVPNIFSILGFVS------YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 76 (187)
Q Consensus 3 g~~h~av~v~i~~~------~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~ 76 (187)
+..+.||.+.++.. +..|||.+|+.....+||.|++| ||+++++|.+ +.+||+||+.||+||+..
T Consensus 30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~--------~~~tAlRE~~EEiGl~~~ 100 (222)
T PLN02709 30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKD--------DIATALREAREEIGLDPS 100 (222)
T ss_pred CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCC--------HHHHHHHHHHHHHCCCch
Confidence 34567888888763 22799999998777899999998 7999998753 789999999999999887
Q ss_pred CCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEec--CCcCCCCccccceEEEecHHHHHHH
Q 029829 77 DVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR--DVSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 77 ~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
.+. .+|......... ++ ....+|..+.. ...+.+|++||+++.|++++.+.+.
T Consensus 101 ~v~-----vlg~L~~~~t~s-g~--~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 101 LVT-----IISVLEPFVNKK-GM--SVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred heE-----EeeecCCeECCC-CC--EEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 543 355443222211 11 22345554543 3345678999999999999998754
No 63
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.68 E-value=6.7e-16 Score=129.22 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=77.1
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
+|.++|. .+++|||+||.... +|+|++| ||++++||+ +++||.||++|||||++.. +.+++
T Consensus 134 aViv~V~-~~~~iLL~rr~~~~---~g~wslP-gG~vE~GEs---------~eeAa~REv~EEtGl~v~~-----~~~~~ 194 (256)
T PRK00241 134 CIIVAVR-RGDEILLARHPRHR---NGVYTVL-AGFVEVGET---------LEQCVAREVMEESGIKVKN-----LRYVG 194 (256)
T ss_pred EEEEEEE-eCCEEEEEEccCCC---CCcEeCc-ccCCCCCCC---------HHHHhhhhhhhccCceeee-----eEEEE
Confidence 4444444 45899999986432 7999987 799999999 8999999999999998864 35566
Q ss_pred EEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHH
Q 029829 88 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
...+..+ +...+.|.+.. ...+.++.+|+.+++|++++++..+
T Consensus 195 s~~~~~p-------~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~~del~~l 238 (256)
T PRK00241 195 SQPWPFP-------HSLMLGFHADYDSGEIVFDPKEIADAQWFRYDELPLL 238 (256)
T ss_pred eEeecCC-------CeEEEEEEEEecCCcccCCcccEEEEEEECHHHCccc
Confidence 5444322 23445666654 3456777789999999999998653
No 64
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=5.3e-16 Score=115.31 Aligned_cols=102 Identities=15% Similarity=0.050 Sum_probs=70.4
Q ss_pred EEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeE
Q 029829 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 88 (187)
Q Consensus 9 v~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~ 88 (187)
+++++++.+|++||+||.... .+.|++| ||++++||+ +.+||+||++||||+++.... .++.
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~~---~~~w~lP-GG~ve~gEs---------~~~a~~REl~EEtGl~~~~~~-----~~~~ 64 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKPG---KTYYVFP-GGGIEEGET---------PEEAAKREALEELGLDVRVEE-----IFLI 64 (121)
T ss_pred eEEEEEeCCCEEEEEEEecCC---CCcEECC-ceeccCCCC---------HHHHHHHHHHHhhCeeEeeee-----EEEE
Confidence 566777777899999986532 5889997 699999999 899999999999999985432 2333
Q ss_pred EEEEccCCCCcceeEEEEEEEEec-CCcCCC---------CccccceEEEecHHHHHHH
Q 029829 89 ILYKAPSDGKWGEHELDYLLFIVR-DVSVNP---------NPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 89 ~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~---------~~~Ev~~~~Wv~~~el~~~ 137 (187)
+.+ + . ...++|.+.. .+.+.. ++++..+++|++++++.++
T Consensus 65 ~~~--~---~----~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 65 VNQ--N---G----RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred Eee--C---C----cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 322 1 1 1234555543 222111 1345678999999999865
No 65
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=2.8e-15 Score=109.61 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=68.0
Q ss_pred eCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEcc
Q 029829 15 VSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAP 94 (187)
Q Consensus 15 ~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~ 94 (187)
..+|++||+||+. |.|++| ||++++||+ +.+||.||+.||||+.+.. +.+++. |..
T Consensus 8 ~~~~~vLlv~r~~------~~w~~P-gG~ve~gE~---------~~~aa~REl~EEtGl~~~~-----~~~~~~--~~~- 63 (112)
T cd04667 8 RRGGRVLLVRKSG------SRWALP-GGKIEPGET---------PLQAARRELQEETGLQGLD-----LLYLFH--VDG- 63 (112)
T ss_pred ecCCEEEEEEcCC------CcEeCC-CCcCCCCCC---------HHHHHHHHHHHHhCCcccc-----eEEEEE--EeC-
Confidence 3468999999863 788887 699999999 8999999999999998753 234433 221
Q ss_pred CCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHH
Q 029829 95 SDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 95 ~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
. ....++|.+... ......++|+.+++|++++++.++
T Consensus 64 ---~---~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 101 (112)
T cd04667 64 ---G---STRHHVFVASVPPSAQPKPSNEIADCRWLSLDALGDL 101 (112)
T ss_pred ---C---CEEEEEEEEEcCCcCCCCCchheeEEEEecHHHhhhc
Confidence 1 234566666543 223334579999999999999875
No 66
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.64 E-value=3.2e-15 Score=115.13 Aligned_cols=111 Identities=20% Similarity=0.271 Sum_probs=79.1
Q ss_pred ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829 6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 85 (187)
Q Consensus 6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~ 85 (187)
..+|++++... |+|||.||+.. .+.|+|++| ||+++.||+ +++||.||++|||||++..++ .
T Consensus 10 ~~~v~~~i~~~-~~iLLvrR~~~--p~~g~WalP-GG~ve~GEt---------~eeaa~REl~EETgL~~~~~~-----~ 71 (145)
T COG1051 10 LVAVGALIVRN-GRILLVRRANE--PGAGYWALP-GGFVEIGET---------LEEAARRELKEETGLRVRVLE-----L 71 (145)
T ss_pred ceeeeEEEEeC-CEEEEEEecCC--CCCCcEeCC-CccCCCCCC---------HHHHHHHHHHHHhCCccccee-----E
Confidence 34667777665 49999999864 478999998 799999999 899999999999999976543 3
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEec-CCcCC-CCccccceEEEecHHHHHHH
Q 029829 86 LGRILYKAPSDGKWGEHELDYLLFIVR-DVSVN-PNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~-~~~~Ev~~~~Wv~~~el~~~ 137 (187)
++. |..+..+... +.++++|++.. .+.+. .+.++..++.|++++++..+
T Consensus 72 ~~v--~~~~~rd~r~-~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~ 122 (145)
T COG1051 72 LAV--FDDPGRDPRG-HHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPEL 122 (145)
T ss_pred EEE--ecCCCCCCce-eEEEEEEEEEecCCCcccCChhhHhhcceecHhHcccc
Confidence 443 3333222222 44555555554 33333 33358999999999999865
No 67
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.63 E-value=2e-14 Score=114.56 Aligned_cols=114 Identities=16% Similarity=0.051 Sum_probs=84.5
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
.+|.|+.++.++++||.|+.... ..++.|++| ||++++||+ +++||+||++||||+.+.. +.++
T Consensus 48 ~~v~v~~~~~~~~vlLvrq~r~~-~~~~~~elP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~~-----l~~l 111 (185)
T PRK11762 48 GAVMIVPILDDDTLLLIREYAAG-TERYELGFP-KGLIDPGET---------PLEAANRELKEEVGFGARQ-----LTFL 111 (185)
T ss_pred CEEEEEEEeCCCEEEEEEeecCC-CCCcEEEcc-ceeCCCCCC---------HHHHHHHHHHHHHCCCCcc-----eEEE
Confidence 36788878888899988764332 357889997 699999999 8999999999999998864 3567
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEecC--CcCCCCccccceEEEecHHHHHHHHHhc
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKA 141 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~l~~~ 141 (187)
+.+.+.. +.. ...+++|++... .....++.|..++.|++++++.+++..+
T Consensus 112 ~~~~~~~----~~~-~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g 163 (185)
T PRK11762 112 KELSLAP----SYF-SSKMNIVLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARP 163 (185)
T ss_pred EEEecCC----Ccc-CcEEEEEEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcC
Confidence 7653321 222 346677777641 2234456788899999999999999976
No 68
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.62 E-value=3.4e-15 Score=112.76 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=72.6
Q ss_pred CCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCC
Q 029829 17 YSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD 96 (187)
Q Consensus 17 ~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~ 96 (187)
++++||.||+.. ..|.|.+| ||++++||+ +.+||+||+.||||+.+... +....+++.+.|..+..
T Consensus 12 ~~~~Llvk~~~~---~~g~W~fP-gG~ve~gEt---------~~eaa~REl~EEtGl~v~~~-~i~~~~~~~~~~~~~~~ 77 (132)
T cd04661 12 DTLVLLVQQKVG---SQNHWILP-QGKREEGET---------LRQTAERTLKELCGNNLKAK-FYGNAPVGFYKYKYPKA 77 (132)
T ss_pred CcEEEEEEeecC---CCCeeECC-cccccCCCC---------HHHHHHHHHHHhhCCCceEE-EEEecCcEEEEEecCcc
Confidence 458999988643 25899998 699999999 89999999999999976531 10001233344444322
Q ss_pred CCc--ceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHH
Q 029829 97 GKW--GEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLR 139 (187)
Q Consensus 97 ~~~--~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~ 139 (187)
... ..+...++|.+.. ++.+.++ +|+.+++|++++++.+++.
T Consensus 78 ~~~~~~~~~~~~~f~~~~~~g~~~~~-~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 78 VRNEGIVGAKVFFFKARYMSGQFELS-QNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred cccccCcccEEEEEEEEEecCccccC-CCcceeEecCHHHHHhhcC
Confidence 110 1123556777764 4444443 7899999999999998754
No 69
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=1.6e-14 Score=107.09 Aligned_cols=109 Identities=16% Similarity=0.005 Sum_probs=74.7
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
..+.+++++.+|++||+||.... .++|+|++| ||+++.||+ +.+|++||+.||+|+.+... ..+
T Consensus 5 ~~~~~ii~~~~~~vLl~~R~~~~-~~~g~w~~P-gg~ve~ge~---------~~~~~~RE~~EE~g~~~~~~-----~~~ 68 (128)
T TIGR00586 5 QIAVGIIRNENGEIIITRRADGH-MFAKLLEFP-GGKEEGGET---------PEQAVVRELEEEIGIPQHFS-----EFE 68 (128)
T ss_pred EEEEEEEECCCCEEEEEEEeCCC-CCCCeEECC-CcccCCCCC---------HHHHHHHHHHHHHCCcceee-----eEE
Confidence 34444556777899999998654 589999998 799999999 78999999999999987532 234
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHH
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
+.+....+. . +...++|.+...... +...+..+++|++++++..+
T Consensus 69 ~~~~h~~~~--~---~~~~~~~~~~~~~~~-~~~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 69 KLEYEFYPR--H---ITLWFWLLERWEGGP-PGKEGQPEEWWVLVGLLADD 113 (128)
T ss_pred EEEEEECCC--c---EEEEEEEEEEEcCCC-cCcccccccEEeCHHHCCcc
Confidence 443333221 1 223455555542221 12346678899999998864
No 70
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.61 E-value=9e-15 Score=109.77 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=73.2
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
++++++++. |+|||.||... ..+|.|++| ||++++||+ +.+||+||++||||+++... ..++
T Consensus 15 ~v~~ii~~~-~~vLL~kr~~~--~~~g~w~lP-gG~ve~gE~---------~~~a~~REl~EEtGl~~~~~-----~~~~ 76 (130)
T cd04511 15 IVGCVPEWE-GKVLLCRRAIE--PRHGFWTLP-AGFMENGET---------TEQGALRETWEEAGARVEID-----GLYA 76 (130)
T ss_pred EEEEEEecC-CEEEEEEecCC--CCCCeEECC-cccccCCCC---------HHHHHHHHHHHHhCCEEEee-----eEEE
Confidence 455566654 89999999754 367999998 799999999 89999999999999987532 2233
Q ss_pred EEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHH
Q 029829 88 RILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLK 135 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~ 135 (187)
. |..+. . +...++|.+... ..+.. ..|..+.+|++++++.
T Consensus 77 ~--~~~~~---~--~~~~~~f~~~~~~~~~~~-~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 77 V--YSVPH---I--SQVYMFYRARLLDLDFAP-GPESLEVRLFTEEEIP 117 (130)
T ss_pred E--EecCC---c--eEEEEEEEEEEcCCcccC-CcchhceEEECHHHCC
Confidence 2 33221 1 335566666653 33333 3688999999999996
No 71
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.61 E-value=3.1e-14 Score=123.54 Aligned_cols=132 Identities=11% Similarity=0.090 Sum_probs=84.7
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
.++.++|+. +|+|||+||+.. ..+|.|.+| ||++++||+ +.+||+||++|||||++....+. ....
T Consensus 204 vtv~avv~~-~g~VLLvrR~~~--p~~g~W~lP-GG~ve~gEt---------~~~Aa~REl~EETGl~v~~~~l~-~~~~ 269 (340)
T PRK05379 204 VTVDAVVVQ-SGHVLLVRRRAE--PGKGLWALP-GGFLEQDET---------LLDACLRELREETGLKLPEPVLR-GSIR 269 (340)
T ss_pred eEEEEEEEE-CCEEEEEEecCC--CCCCeEECC-cccCCCCCC---------HHHHHHHHHHHHHCCcccccccc-eeee
Confidence 456666655 689999999764 348999998 799999999 89999999999999987643321 0001
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEecC-Cc-C-CCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHH
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVRD-VS-V-NPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL 162 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~-~-~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l 162 (187)
....|..+.....+ +.+.++|.+... .. + ....+|+.+++|++++++..+- ..+-.....++..|+
T Consensus 270 ~~~~f~~p~r~~~~-~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~---------~~~~~dh~~ii~~~~ 338 (340)
T PRK05379 270 DQQVFDHPGRSLRG-RTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMR---------DRMFEDHFQIITHFL 338 (340)
T ss_pred eeEEEcCCCCCCCC-cEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhh---------hhhhhHHHHHHHHHh
Confidence 11123333211111 345566665432 11 1 2234789999999999998651 123355667777764
No 72
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=2.5e-14 Score=107.77 Aligned_cols=112 Identities=13% Similarity=-0.002 Sum_probs=72.5
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
+|.++|+++ |+|||++|.. .+.|.+| ||++++||+ +.+||+||++||||+.+... ...++
T Consensus 2 ~~~~ii~~~-~~vLLv~~~~-----~~~w~lP-gG~ve~gEt---------~~~aa~REl~EEtGl~~~~~----~~~l~ 61 (131)
T cd04686 2 AVRAIILQG-DKILLLYTKR-----YGDYKFP-GGGVEKGED---------HIEGLIRELQEETGATNIRV----IEKFG 61 (131)
T ss_pred cEEEEEEEC-CEEEEEEEcC-----CCcEECc-cccCCCCCC---------HHHHHHHHHHHHHCCccccc----ceEEE
Confidence 677777774 8999988753 2579887 699999999 89999999999999986321 12344
Q ss_pred EEEEEcc--CCCCcceeEEEEEEEEecC---CcCCCCcccc---ceEEEecHHHHHHHHH
Q 029829 88 RILYKAP--SDGKWGEHELDYLLFIVRD---VSVNPNPDEV---AEYKYVNREQLKELLR 139 (187)
Q Consensus 88 ~~~y~~~--~~~~~~e~e~~~vf~~~~~---~~~~~~~~Ev---~~~~Wv~~~el~~~l~ 139 (187)
.+....+ ..+...-+.+.++|++... ..+.++..|. ..++|++++++.+.-.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~~ 121 (131)
T cd04686 62 TYTERRPWRKPDADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHNE 121 (131)
T ss_pred EEEeeccccCCCCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhhH
Confidence 4322111 1111111345566766542 2233443343 3589999999987543
No 73
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.51 E-value=2.5e-13 Score=108.60 Aligned_cols=114 Identities=16% Similarity=0.089 Sum_probs=81.0
Q ss_pred EEEEEEEeCC-CeEEEEEecCCC----CCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829 8 IFSILGFVSY-SVMSGQQRSGTK----VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82 (187)
Q Consensus 8 av~v~i~~~~-g~vLL~rRs~~k----~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~ 82 (187)
+|++++++.+ +++||.++-... ..-+..|++| ||++++||+ +++||+||++||||+.+..
T Consensus 46 ~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelP-aG~ve~gE~---------~~~aA~REl~EEtG~~~~~----- 110 (185)
T TIGR00052 46 AAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELS-AGMVEKGES---------PEDVARREAIEEAGYQVKN----- 110 (185)
T ss_pred eEEEEEEECCCCEEEEEECceeeeeecCCcceEEEEC-cEecCCCCC---------HHHHHHHHccccccceecc-----
Confidence 7788888764 788887642211 1146889997 699999999 8999999999999999864
Q ss_pred eeeeeEEEEEccCCCCcceeEEEEEEEEecCC-----cCCCCccccceEEEecHHHHHHHHHhc
Q 029829 83 FTPLGRILYKAPSDGKWGEHELDYLLFIVRDV-----SVNPNPDEVAEYKYVNREQLKELLRKA 141 (187)
Q Consensus 83 l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~-----~~~~~~~Ev~~~~Wv~~~el~~~l~~~ 141 (187)
+.+++.+ |..+ +.. .+.+++|++..+. ....+++|..++.|++++++.+++..+
T Consensus 111 ~~~~~~~-~~~~---g~~-~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 111 LRKLLSF-YSSP---GGV-TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred eEEEEEE-EcCC---CCC-cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence 3456553 2222 222 4677888886421 112234566789999999999999986
No 74
>PRK08999 hypothetical protein; Provisional
Probab=99.50 E-value=4.3e-13 Score=114.47 Aligned_cols=108 Identities=19% Similarity=0.107 Sum_probs=75.5
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
..+.+++++.+|++||+||..+. .++|+|++| ||++++||+ +.+|+.||++||+|+.+... ..+
T Consensus 6 ~~~~~vi~~~~~~vLL~kR~~~~-~~~g~w~~P-gG~ve~gE~---------~~~aa~RE~~EE~Gl~~~~~-----~~l 69 (312)
T PRK08999 6 HVAAGVIRDADGRILLARRPEGK-HQGGLWEFP-GGKVEPGET---------VEQALARELQEELGIEVTAA-----RPL 69 (312)
T ss_pred EEEEEEEECCCCeEEEEEecCCC-CCCCeEECC-ccCCCCCCC---------HHHHHHHHHHHHhCCceecc-----eeE
Confidence 34555566777899999997654 589999998 699999999 78999999999999987643 224
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHH
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE 136 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~ 136 (187)
+.+.+..+. . ....++|.+.... ..++..|..+++|++++++.+
T Consensus 70 ~~~~h~~~~--~---~~~i~~y~~~~~~-~~~~~~e~~~~~Wv~~~el~~ 113 (312)
T PRK08999 70 ITVRHDYPD--K---RVRLDVRRVTAWQ-GEPHGREGQPLAWVAPDELAV 113 (312)
T ss_pred EEEEEEcCC--C---eEEEEEEEEEEec-CcccCccCCccEEecHHHccc
Confidence 444333321 1 1233555554321 123456788999999999875
No 75
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.49 E-value=2.3e-12 Score=104.45 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=81.4
Q ss_pred eEEEEEEEeCC-CeEEEEE--ecCCC--CCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCC
Q 029829 7 NIFSILGFVSY-SVMSGQQ--RSGTK--VTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 81 (187)
Q Consensus 7 ~av~v~i~~~~-g~vLL~r--Rs~~k--~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~ 81 (187)
.+|.|+.++++ ++|+|.+ |.... ...+-.|++| +|.+++||+ +.+||+|||.||||+.+..
T Consensus 50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~P-AG~vd~gE~---------p~~aA~REL~EETGy~a~~---- 115 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMV-AGMIEEGES---------VEDVARREAIEEAGLIVGR---- 115 (202)
T ss_pred CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEcc-ceEcCCCCC---------HHHHHHHHHHHHhCceeeE----
Confidence 37888888864 6877755 54221 0124578887 699999999 8999999999999999764
Q ss_pred CeeeeeEEEEEccCCCCcceeEEEEEEEEecCC----c--CCCCccccceEEEecHHHHHHHHHhc
Q 029829 82 EFTPLGRILYKAPSDGKWGEHELDYLLFIVRDV----S--VNPNPDEVAEYKYVNREQLKELLRKA 141 (187)
Q Consensus 82 ~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~----~--~~~~~~Ev~~~~Wv~~~el~~~l~~~ 141 (187)
+.+++.+ |..+ +.. .+.+++|++..+. . ...+++|..++.|++++++.+++.++
T Consensus 116 -~~~l~~~-~~sp---g~~-~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G 175 (202)
T PRK10729 116 -TKPVLSY-LASP---GGT-SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG 175 (202)
T ss_pred -EEEEEEE-EcCC---CcC-ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcC
Confidence 3556543 2222 333 4577888876311 1 23566788889999999999999876
No 76
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.46 E-value=1.8e-13 Score=114.65 Aligned_cols=107 Identities=15% Similarity=0.244 Sum_probs=77.6
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
+|-|++.+. +++||.+|.. ++||+++.. +|.|++||| +++|+.||+.||+||.+..+ +|++
T Consensus 146 ~vIv~v~~~-~~ilLa~~~~---h~~g~yS~L-AGFVE~GET---------lE~AV~REv~EE~Gi~V~~v-----rY~~ 206 (279)
T COG2816 146 CVIVAVIRG-DEILLARHPR---HFPGMYSLL-AGFVEPGET---------LEQAVAREVFEEVGIKVKNV-----RYVG 206 (279)
T ss_pred eEEEEEecC-CceeecCCCC---CCCcceeee-eecccCCcc---------HHHHHHHHHHHhhCeEEeee-----eEEe
Confidence 444555554 4578877654 469999985 699999999 99999999999999999753 4555
Q ss_pred EEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHHHHHHHh
Q 029829 88 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQLKELLRK 140 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~ 140 (187)
+..+-.|. ...--|.+.. ++++++|..|+.+++|++.+|+..++..
T Consensus 207 SQPWPfP~-------SLMigf~aey~sgeI~~d~~Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 207 SQPWPFPH-------SLMLGFMAEYDSGEITPDEGELEDARWFSRDEVLPALPP 253 (279)
T ss_pred ccCCCCch-------hhhhhheeeeccccccCCcchhhhccccCHhHHhhhcCC
Confidence 43332222 2222233443 4668999999999999999998877764
No 77
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=99.45 E-value=9.4e-14 Score=113.77 Aligned_cols=129 Identities=19% Similarity=0.192 Sum_probs=105.4
Q ss_pred eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCCC
Q 029829 19 VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK 98 (187)
Q Consensus 19 ~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~~ 98 (187)
++|++|||++|.+|||+|||.+||.+..|-+ +.++|++|..||..|+... ..++...|.++|..-....
T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~g---------I~eT~iKE~~EEAnl~~~~--~~Nlv~~G~VSy~~~esr~ 217 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFG---------IKETAIKEAAEEANLPSDL--VKNLVSAGCVSYYKFESRQ 217 (306)
T ss_pred EEEecccCCccccCcchhhhhhccccccCch---------HHHHHHHHHHHhcCCchhh--HhcceecceeEEEeeehhh
Confidence 7999999999999999999999999999987 9999999999999998843 2467788888887432222
Q ss_pred cceeEEEEEEEEecC--CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHH
Q 029829 99 WGEHELDYLLFIVRD--VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKW 165 (187)
Q Consensus 99 ~~e~e~~~vf~~~~~--~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~~~ 165 (187)
....+..|||....+ .-+++++.||+.+..+++.|..+.+..- .|.|.++.++-+||-++
T Consensus 218 ~~~pe~qYVfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v~~l~~k-------~FKpncAlV~iDflirH 279 (306)
T KOG4313|consen 218 GLFPETQYVFDLELPLDFIPQNNDGEVQAFELLTLKDCVERLFTK-------DFKPNCALVVIDFLIRH 279 (306)
T ss_pred ccCccceEEEeccCchhhcCCCCCCceeeEeeecHHHHHHHHHhh-------ccCCCcceEEEEEeecc
Confidence 222567788888753 4567888999999999999999888864 79999998887776443
No 78
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.44 E-value=2.7e-12 Score=96.65 Aligned_cols=59 Identities=19% Similarity=0.121 Sum_probs=46.8
Q ss_pred EEEEEEEeC---CCeEEEEEecCC--CCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCcc
Q 029829 8 IFSILGFVS---YSVMSGQQRSGT--KVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 76 (187)
Q Consensus 8 av~v~i~~~---~g~vLL~rRs~~--k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~ 76 (187)
++++++++. ..+|||++|... .....|.|++| ||+++.||+ +.+||+||+.||||+++.
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~---------~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGED---------PLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcC---------HHHHHHHHHHHHhCCcce
Confidence 566777652 237999987433 23567999998 799999999 899999999999999876
No 79
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.38 E-value=3.8e-11 Score=96.53 Aligned_cols=114 Identities=15% Similarity=0.043 Sum_probs=79.0
Q ss_pred eEEEEEEEeC-CCeEEEEE--ecCC-CCC--CCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCC
Q 029829 7 NIFSILGFVS-YSVMSGQQ--RSGT-KVT--FPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPV 80 (187)
Q Consensus 7 ~av~v~i~~~-~g~vLL~r--Rs~~-k~~--~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~ 80 (187)
.+|+|++++. +++++|.| |... ... -+-.|++| +|.++++ + +++||+|||.||||+.+..
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElP-AG~vd~~-~---------p~~aA~REL~EETGy~a~~--- 111 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETC-AGLLDND-E---------PEVCIRKEAIEETGYEVGE--- 111 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEe-ccccCCC-C---------HHHHHHHHHHHhhCCccce---
Confidence 4778888886 56888765 5432 001 12457776 5888864 5 7999999999999998864
Q ss_pred CCeeeeeEEEEEccCCCCcceeEEEEEEEEecC-----CcCCCCccccceEEEecHHHHHHHHHhc
Q 029829 81 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRD-----VSVNPNPDEVAEYKYVNREQLKELLRKA 141 (187)
Q Consensus 81 ~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-----~~~~~~~~Ev~~~~Wv~~~el~~~l~~~ 141 (187)
+.+++.+ |..+ +.. .+.+++|++... .....+++|..++.|+|++++.+++..+
T Consensus 112 --~~~l~~~-~~sp---G~s-~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G 170 (191)
T PRK15009 112 --VRKLFEL-YMSP---GGV-TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG 170 (191)
T ss_pred --EEEeeEE-EcCC---ccc-CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence 4556653 3332 333 567788888642 1122456788999999999999999986
No 80
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=99.33 E-value=7.9e-12 Score=101.95 Aligned_cols=114 Identities=19% Similarity=0.097 Sum_probs=80.8
Q ss_pred eEEEEEEEeC-CC--eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829 7 NIFSILGFVS-YS--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83 (187)
Q Consensus 7 ~av~v~i~~~-~g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l 83 (187)
.+|.+.+++. +| +|||+|||.+-..++|.-++| ||..++.+.+ -..+|.||.+||+|++...+.+
T Consensus 44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s--------~~~tAlREt~EEIGl~~~~~~~--- 111 (246)
T KOG3069|consen 44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKS--------DIQTALRETEEEIGLDPELVDV--- 111 (246)
T ss_pred ccEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccc--------hHHHHHHHHHHHhCCCHHHhhh---
Confidence 4777777776 44 799999999999999999998 6999998875 5799999999999999975432
Q ss_pred eeeeEEE-EEccCCCCcceeEEEEEEEEecC---CcCCCCccccceEEEecHHHHHHHH
Q 029829 84 TPLGRIL-YKAPSDGKWGEHELDYLLFIVRD---VSVNPNPDEVAEYKYVNREQLKELL 138 (187)
Q Consensus 84 ~~~~~~~-y~~~~~~~~~e~e~~~vf~~~~~---~~~~~~~~Ev~~~~Wv~~~el~~~l 138 (187)
+|... +..+. ++. ....|.+.... ....+|++||.++.||+++++..-.
T Consensus 112 --~g~l~~~~~r~--~~~--v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~~ 164 (246)
T KOG3069|consen 112 --LGALPPFVLRS--GWS--VFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLPK 164 (246)
T ss_pred --hhhccceeecc--Ccc--cceeEEEEecccccccccCCchheeeeeeeeHHHHhhhh
Confidence 33211 11111 111 11122222222 4567899999999999999988643
No 81
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.32 E-value=7e-11 Score=92.11 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=78.6
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
+|.++.+. ++++||.++.. ..|++| ||++++||+ +.+||+||+.||||+.+.. +.++|
T Consensus 26 ~V~ii~~~-~~~~LL~~~~~------~~~elP-gG~vE~gEt---------~~eaA~REl~EETG~~~~~-----~~~lg 83 (156)
T TIGR02705 26 HVLVIPRY-KDQWLLTEHKR------RGLEFP-GGKVEPGET---------SKEAAIREVMEETGAIVKE-----LHYIG 83 (156)
T ss_pred EEEEEEEE-CCEEEEEEEcC------CcEECC-ceecCCCCC---------HHHHHHHHHHHHhCcEeee-----eEEEE
Confidence 45555454 45888876542 347776 699999999 8999999999999998764 45677
Q ss_pred EEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEE-EecHHHHHHHHHhccCCCCCcccChhHH
Q 029829 88 RILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYK-YVNREQLKELLRKADAGEEGLKLSPWFR 155 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~-Wv~~~el~~~l~~~~~~~~~~~~~p~~~ 155 (187)
.+.. .... . ....++|++... ..... +|..+.. +++++++.+++..+ ..||..++
T Consensus 84 ~~~~--~~~~--~-~~~~~vf~A~~~-~~~~~-~e~~E~~~~~~~~~~~~~~~~g------~~~s~~~~ 139 (156)
T TIGR02705 84 QYEV--EGES--T-DFVKDVYFAEVS-ALESK-DDYLETKGPVLLQEIPDIIKAD------PRFSFIMK 139 (156)
T ss_pred EEEe--cCCC--c-EEEEEEEEEEEe-ccccC-CCceeeEeEEEHHHHHHHHhcC------CcccEEEc
Confidence 6432 2221 2 456788888754 12233 5656666 79999999999876 46777666
No 82
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.32 E-value=3e-11 Score=89.99 Aligned_cols=100 Identities=14% Similarity=0.061 Sum_probs=69.3
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
+|.|+++++ +++||.+|. .+.|++| ||++++||+ +.+||+||+.||+|+.+.. +.+++
T Consensus 2 ~v~vi~~~~-~~vLl~~~~------~~~w~lP-gG~ve~gE~---------~~~aa~REl~EE~G~~~~~-----~~~l~ 59 (118)
T cd04665 2 SVLVICFYD-DGLLLVRHK------DRGWEFP-GGHVEPGET---------IEEAARREVWEETGAELGS-----LTLVG 59 (118)
T ss_pred EEEEEEEEC-CEEEEEEeC------CCEEECC-ccccCCCCC---------HHHHHHHHHHHHHCCccCc-----eEEEE
Confidence 456666664 788888774 2568887 699999999 8999999999999999854 35676
Q ss_pred EEEEEccCCCCcceeEEEEEEEEec-CCcCCCCccccceEEEecHHHH
Q 029829 88 RILYKAPSDGKWGEHELDYLLFIVR-DVSVNPNPDEVAEYKYVNREQL 134 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~~vf~~~~-~~~~~~~~~Ev~~~~Wv~~~el 134 (187)
.+.+.. ... ....++|.+.. .........|+....|++....
T Consensus 60 ~~~~~~--~~~---~~~~~~y~a~~~~~~~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 60 YYQVDL--FES---GFETLVYPAVSAQLEEKASYLETDGPVLFKNEPE 102 (118)
T ss_pred EEEecC--CCC---cEEEEEEEEEEEecccccccccccCcEEeccCCc
Confidence 643332 111 23456666654 2222223489999999997654
No 83
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.27 E-value=1e-10 Score=87.23 Aligned_cols=102 Identities=19% Similarity=0.101 Sum_probs=60.8
Q ss_pred EEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeE
Q 029829 9 FSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGR 88 (187)
Q Consensus 9 v~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~ 88 (187)
+.+++...++ +||.+|+.. .++|.|.+| ||++++||+ +.+||.||+.||+|+.+.... +..+..
T Consensus 7 av~vl~~~~~-~lL~~r~~~--~~~~~w~lP-gG~ve~~E~---------~~~aa~REl~EE~g~~~~~~~---l~~~~~ 70 (118)
T cd04674 7 VVALLPVDDG-LLVIRRGIE--PGRGKLALP-GGFIELGET---------WQDAVARELLEETGVAVDPAD---IRLFDV 70 (118)
T ss_pred EEEEEEECCC-EEEEEeecC--CCCCeEECC-ceecCCCCC---------HHHHHHHHHHHHHCCcccccE---EEEEEE
Confidence 3334444445 555556532 358999997 699999999 899999999999999886321 222211
Q ss_pred EEEEccCCCCcceeEEEEEEEEec-CCcC--CCCccccceEEEecHHH
Q 029829 89 ILYKAPSDGKWGEHELDYLLFIVR-DVSV--NPNPDEVAEYKYVNREQ 133 (187)
Q Consensus 89 ~~y~~~~~~~~~e~e~~~vf~~~~-~~~~--~~~~~Ev~~~~Wv~~~e 133 (187)
|..+. . +.+.+.|.... .... .....|.+++.|+....
T Consensus 71 --~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~ 111 (118)
T cd04674 71 --RSAPD--G---TLLVFGLLPERRAADLPPFEPTDETTERAVVTAPS 111 (118)
T ss_pred --EecCC--C---eEEEEEEEeccccccCCCCCCCcceeeEEEccCCc
Confidence 22221 1 23444444433 2222 22346777777776544
No 84
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.23 E-value=7.9e-12 Score=105.75 Aligned_cols=136 Identities=20% Similarity=0.220 Sum_probs=87.9
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeee
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLG 87 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~ 87 (187)
.|-.+|.+.+|+.+|..|. +.+-||+|+++ +|.+++||| +++||+||+.||+||++..+. +.
T Consensus 189 vVIm~li~~d~~~~LL~R~--~r~~~gl~t~l-AGFlEpGES---------~eeav~REtwEEtGi~V~~I~-----~~- 250 (345)
T KOG3084|consen 189 VVIMLLIDHDGKHALLGRQ--KRYPPGLWTCL-AGFLEPGES---------IEEAVRRETWEETGIEVEVIS-----YV- 250 (345)
T ss_pred eEEEEEEcCCCCEeeeecc--cCCCCchhhhh-hccCCcccc---------HHHHHHHHHHHHhCceeeeEe-----ee-
Confidence 5667778888865555563 34568999986 699999999 999999999999999997542 11
Q ss_pred EEEEEccCCCCcceeEEE-EEE-EEecCCcCCCCcc-ccceEEEecHHHHHHHHHh-ccCC-C--CCcccChhHHHHHHH
Q 029829 88 RILYKAPSDGKWGEHELD-YLL-FIVRDVSVNPNPD-EVAEYKYVNREQLKELLRK-ADAG-E--EGLKLSPWFRLVVDN 160 (187)
Q Consensus 88 ~~~y~~~~~~~~~e~e~~-~vf-~~~~~~~~~~~~~-Ev~~~~Wv~~~el~~~l~~-~~~~-~--~~~~~~p~~~~~~~~ 160 (187)
-.+|.. .+. ..+. .++ ++..+..+..+.+ |..+++|++-+++.+.+.. +--+ + ...-+.|.-..+..+
T Consensus 251 ---asQPWP-~~p-~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~aL~~kg~~Rv~~~~a~i~~P~~~aIA~q 325 (345)
T KOG3084|consen 251 ---ASQPWP-LMP-QSLMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKSALTTKGLVRVQIEKALILIPPPFAIAHQ 325 (345)
T ss_pred ---ecCCCC-CCc-hHHHHHHHHHHhhCCccccCcchhhhhcccccHHHHHHHHHhcCCccccccCcceecCChhHHHHH
Confidence 122221 111 1111 111 1223567778877 9999999999999998873 3100 0 113455655555555
Q ss_pred HHHHHH
Q 029829 161 FLFKWW 166 (187)
Q Consensus 161 ~l~~~~ 166 (187)
.+..|.
T Consensus 326 LI~~~~ 331 (345)
T KOG3084|consen 326 LILHWV 331 (345)
T ss_pred HHHHHH
Confidence 555553
No 85
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.21 E-value=1.5e-10 Score=92.71 Aligned_cols=100 Identities=11% Similarity=0.117 Sum_probs=61.2
Q ss_pred eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC---------e--eeee
Q 029829 19 VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE---------F--TPLG 87 (187)
Q Consensus 19 ~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~---------l--~~~~ 87 (187)
++|+.||+. +|.|.+| ||+++++|+ +.+||.||+.||||+.+..+.... + ..+.
T Consensus 50 ~vLl~~r~~-----~g~walP-GG~v~~~E~---------~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~ 114 (186)
T cd03670 50 QFVAIKRPD-----SGEWAIP-GGMVDPGEK---------ISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVE 114 (186)
T ss_pred EEEEEEeCC-----CCcCcCC-eeeccCCCC---------HHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccE
Confidence 688888853 5899997 799999998 899999999999987653322110 0 0122
Q ss_pred EEEEEccC------CCCcceeEEEEEEEEecCC---cCCC-CccccceEEEecHHHHHH
Q 029829 88 RILYKAPS------DGKWGEHELDYLLFIVRDV---SVNP-NPDEVAEYKYVNREQLKE 136 (187)
Q Consensus 88 ~~~y~~~~------~~~~~e~e~~~vf~~~~~~---~~~~-~~~Ev~~~~Wv~~~el~~ 136 (187)
. |.... ++.+. ..+.|.|.+.... ...+ ..+|..+++|++++++..
T Consensus 115 v--y~~~~~dpr~td~~w~-~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~ 170 (186)
T cd03670 115 V--YKGYVDDPRNTDNAWM-ETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLP 170 (186)
T ss_pred E--EeccccCCCCCCcceE-EEEEEEEEecCcccccccccCCCCchheeEEEEcccccc
Confidence 2 32111 11222 2344545442111 1222 246899999999999764
No 86
>PLN03143 nudix hydrolase; Provisional
Probab=99.18 E-value=1e-09 Score=93.35 Aligned_cols=116 Identities=14% Similarity=0.011 Sum_probs=72.3
Q ss_pred eEEEEEEE-eCCCe--EEEEEecCCCCCCCCceeeccccCCCCC-CChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829 7 NIFSILGF-VSYSV--MSGQQRSGTKVTFPLVWTNTCCSHPLYR-ESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82 (187)
Q Consensus 7 ~av~v~i~-~~~g~--vLL~rRs~~k~~~pG~W~~~~gGhve~g-Es~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~ 82 (187)
.+|+|++. +.+|+ ++|.++..... -.-.|++| ||.++++ |+ +.+||+||++||||+.+....
T Consensus 129 ~aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~P-AG~lD~~~ed---------p~~aA~REL~EETG~~~~a~~--- 194 (291)
T PLN03143 129 PAVAVLILLESEGETYAVLTEQVRVPV-GKFVLELP-AGMLDDDKGD---------FVGTAVREVEEETGIKLKLED--- 194 (291)
T ss_pred CeEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEec-ccccCCCCCC---------HHHHHHHHHHHHHCCccccce---
Confidence 37777765 55565 77766543211 12378887 6888975 66 899999999999999864322
Q ss_pred eeeeeE--------EEEEccCCCCcceeEEEEEEEEecCCc------------CCCCccccceEEEecHHHHHHHHHh
Q 029829 83 FTPLGR--------ILYKAPSDGKWGEHELDYLLFIVRDVS------------VNPNPDEVAEYKYVNREQLKELLRK 140 (187)
Q Consensus 83 l~~~~~--------~~y~~~~~~~~~e~e~~~vf~~~~~~~------------~~~~~~Ev~~~~Wv~~~el~~~l~~ 140 (187)
+..+.. -.|.. .+.. .+.+++|++..... ...+.+|..++.|++++++..++..
T Consensus 195 lv~L~~~~~~~~g~~v~ps---pG~~-dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD 268 (291)
T PLN03143 195 MVDLTAFLDPSTGCRMFPS---PGGC-DEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTAD 268 (291)
T ss_pred EEEeeeccccCcCceEEec---CCcc-CCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHh
Confidence 222321 11222 2333 34556776543211 1235678889999999999888753
No 87
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.18 E-value=3.2e-10 Score=83.43 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=67.6
Q ss_pred EEEEEEEeCC-CeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHH-HHHHHHHHHhCCCccCCCCCCeee
Q 029829 8 IFSILGFVSY-SVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRN-AAQRKLLDELGICAEDVPVDEFTP 85 (187)
Q Consensus 8 av~v~i~~~~-g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~-Aa~REl~EE~Gl~~~~~~~~~l~~ 85 (187)
++.+++.... +++|+++|.... |.|.+| ||+++++|+ +.+ ||+||+.||||+.+... .+..
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~----~~~~~P-gG~ve~~e~---------~~~~aa~RE~~EEtGl~~~~~---~~~~ 75 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDG----GLWELP-GGKVEPGEE---------LPEEAAARELEEETGLRVKDE---RLEL 75 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccC----CceecC-CcccCCCCc---------hHHHHHHHHHHHHhCCeeeee---ccee
Confidence 4445444443 789999987653 689987 699999998 355 99999999999998741 1233
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEec----CCcCCCC---ccccceEEEecHHHHHHHHH
Q 029829 86 LGRILYKAPSDGKWGEHELDYLLFIVR----DVSVNPN---PDEVAEYKYVNREQLKELLR 139 (187)
Q Consensus 86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~----~~~~~~~---~~Ev~~~~Wv~~~el~~~l~ 139 (187)
++.+.................++.... ...+..+ ..|...+.|+++.++.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 136 (161)
T COG0494 76 LGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVL 136 (161)
T ss_pred eeeccCcccCcccccceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHcccccc
Confidence 443322221111000011111111111 1111111 36899999999999886544
No 88
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.08 E-value=1.7e-09 Score=81.57 Aligned_cols=52 Identities=13% Similarity=-0.070 Sum_probs=39.4
Q ss_pred EEEEEEEeCCC--eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCc
Q 029829 8 IFSILGFVSYS--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 75 (187)
Q Consensus 8 av~v~i~~~~g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~ 75 (187)
.+.+++.+.++ +||+.|+.. +.|.+| ||++++||+ +.+||+||++||||+..
T Consensus 2 ~~~~~~~~~~~~~~ll~~r~~~------~~~~lP-gG~ve~~E~---------~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 2 KCPAVLRRNGEVLELLVFEHPL------AGFQIV-KGTVEPGET---------PEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEEeCCceEEEEEEEcCC------CcEECC-CccCCCCCC---------HHHHHHHHHHHHHCCee
Confidence 35566666554 565554432 348776 699999999 89999999999999987
No 89
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.04 E-value=1.3e-08 Score=73.78 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=65.9
Q ss_pred ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeee
Q 029829 6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTP 85 (187)
Q Consensus 6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~ 85 (187)
++.+.++++.++|++||+||... ..|+|+|++| +|.++.+++ ..++..|++.+|.++... .
T Consensus 2 ~~~~~~~ii~~~~~~ll~kR~~~-gl~~glwefP-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--------~ 62 (118)
T cd03431 2 RRGIAVVVIRNDGRVLLEKRPEK-GLLAGLWEFP-SVEWEEEAD---------GEEALLSALKKALRLSLE--------P 62 (118)
T ss_pred eEEEEEEEEecCCeEEEEECCCC-CCCCcceeCC-CccccCCcC---------HHHHHHHHHHHHhCcccc--------c
Confidence 34444555555789999999764 4699999998 577777777 678888999998875111 1
Q ss_pred eeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHH
Q 029829 86 LGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 86 ~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
++.+....+. . +-..++|.+...... .+..+..|++++++.++
T Consensus 63 ~~~~~H~fth--~---~~~~~~~~~~~~~~~----~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 63 LGTVKHTFTH--F---RLTLHVYLARLEGDL----LAPDEGRWVPLEELDEY 105 (118)
T ss_pred ceeEEEecCC--e---EEEEEEEEEEEeCCC----cCccccEEccHHHHhhC
Confidence 3333333221 0 112355555443211 24567899999998864
No 90
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.94 E-value=1.5e-08 Score=77.29 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=75.5
Q ss_pred eEEEEEEEeCCC---eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCe
Q 029829 7 NIFSILGFVSYS---VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEF 83 (187)
Q Consensus 7 ~av~v~i~~~~g---~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l 83 (187)
.+++|+.+..++ +|||..-|. .|-.|-+| +|+++++|+ ..+||.||+.||.|+.-...+.
T Consensus 10 ~vagCi~~r~~~~~ieVLlvsSs~----~~~~wi~P-KGGwE~dE~---------~~eAA~REt~EEAGv~G~l~~~--- 72 (145)
T KOG2839|consen 10 LVAGCICYRSDKEKIEVLLVSSSK----KPHRWIVP-KGGWEPDES---------VEEAALRETWEEAGVKGKLGRL--- 72 (145)
T ss_pred EEEEeeeeeecCcceEEEEEecCC----CCCCccCC-CCCCCCCCC---------HHHHHHHHHHHHhCceeeeecc---
Confidence 455566665544 688876443 23446554 589999999 7999999999999998875432
Q ss_pred eeeeEEE-EEccCCCCcceeEEEEEEEEec--CCcCCCC-ccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHH
Q 029829 84 TPLGRIL-YKAPSDGKWGEHELDYLLFIVR--DVSVNPN-PDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVD 159 (187)
Q Consensus 84 ~~~~~~~-y~~~~~~~~~e~e~~~vf~~~~--~~~~~~~-~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~ 159 (187)
++.+. +........ .-.++|.... ....-++ ..|..+.+|++++|....+. -.|+...+.
T Consensus 73 --~~g~~~~~~~~~~~~---~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~-----------~~~m~~al~ 136 (145)
T KOG2839|consen 73 --LGGFEDFLSKKHRTK---PKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQ-----------HKWMKAALE 136 (145)
T ss_pred --ccchhhccChhhccc---ccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHh-----------hHHHHHHHH
Confidence 34433 222211111 1113443332 2222222 35699999999999998755 245666666
Q ss_pred HHHH
Q 029829 160 NFLF 163 (187)
Q Consensus 160 ~~l~ 163 (187)
.|+.
T Consensus 137 e~~~ 140 (145)
T KOG2839|consen 137 EFLQ 140 (145)
T ss_pred HHHH
Confidence 5644
No 91
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=5.4e-08 Score=82.34 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=79.6
Q ss_pred eEEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeee
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPL 86 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~ 86 (187)
.+++.+++|.+++||+.+=.......+|.|-+|. |.+.++|+ +..+|+||++||||++.....+.
T Consensus 116 vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~pt-G~v~~~e~---------i~~gavrEvkeetgid~ef~eVl----- 180 (295)
T KOG0648|consen 116 VGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPT-GRVEEGED---------IWHGAVREVKEETGIDTEFVEVL----- 180 (295)
T ss_pred eeeeeeEecCCceeEEEEecccceeecccccccc-eEeccccc---------chhhhhhhhHHHhCcchhhhhHH-----
Confidence 3788899998889999764445556789999985 69999998 89999999999999977654431
Q ss_pred eEEEEEccCCCCcceeEEEEEEEEe--c-CCcCCCCccccceEEEecHHHHHHHHHh
Q 029829 87 GRILYKAPSDGKWGEHELDYLLFIV--R-DVSVNPNPDEVAEYKYVNREQLKELLRK 140 (187)
Q Consensus 87 ~~~~y~~~~~~~~~e~e~~~vf~~~--~-~~~~~~~~~Ev~~~~Wv~~~el~~~l~~ 140 (187)
.+....+..+..-..+.+|.|. + ...+..+..|+..+.|+++++.......
T Consensus 181 ---a~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~ 234 (295)
T KOG0648|consen 181 ---AFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLV 234 (295)
T ss_pred ---HHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhccccc
Confidence 1222211111100122222232 2 4456777889999999999987766553
No 92
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.52 E-value=2.8e-06 Score=68.10 Aligned_cols=112 Identities=17% Similarity=0.060 Sum_probs=70.3
Q ss_pred EEEEEE-EeCCC--eEEEEE--ecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCC
Q 029829 8 IFSILG-FVSYS--VMSGQQ--RSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDE 82 (187)
Q Consensus 8 av~v~i-~~~~g--~vLL~r--Rs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~ 82 (187)
+|+|+. +..+| .++|++ |.+.. .-+.++| +|-++.||+ ++.||+|||+||||+.-....
T Consensus 75 gVaIl~il~~dG~~~ivL~kQfRpP~G---k~ciElP-AGLiD~ge~---------~~~aAiREl~EEtGy~gkv~~--- 138 (225)
T KOG3041|consen 75 GVAILAILESDGKPYIVLVKQFRPPTG---KICIELP-AGLIDDGED---------FEGAAIRELEEETGYKGKVDM--- 138 (225)
T ss_pred eEEEEEEEecCCcEEEEEEEeecCCCC---cEEEEcc-cccccCCCc---------hHHHHHHHHHHHhCccceeee---
Confidence 455553 44566 466765 54321 2355666 699999998 899999999999999843221
Q ss_pred eeeeeEEEEEccCCCCcceeEEE-EEEEEec----C--CcCCCCccccceEEEecHHHHHHHHHhc
Q 029829 83 FTPLGRILYKAPSDGKWGEHELD-YLLFIVR----D--VSVNPNPDEVAEYKYVNREQLKELLRKA 141 (187)
Q Consensus 83 l~~~~~~~y~~~~~~~~~e~e~~-~vf~~~~----~--~~~~~~~~Ev~~~~Wv~~~el~~~l~~~ 141 (187)
....-|..| +......| -++.+.- + +...+++.|..+++-+++.++.+.+.+-
T Consensus 139 ---~s~~~f~DP---Gltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~l 198 (225)
T KOG3041|consen 139 ---VSPTVFLDP---GLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELADL 198 (225)
T ss_pred ---ccccEEcCC---CCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHhh
Confidence 122235554 22212233 2222321 1 2245778899999999999999888764
No 93
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.24 E-value=8.6e-06 Score=61.13 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=70.9
Q ss_pred CceEEEEEEEeC-CC--eEEEEEecCCCCCC----CCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 029829 5 VPNIFSILGFVS-YS--VMSGQQRSGTKVTF----PLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 77 (187)
Q Consensus 5 ~h~av~v~i~~~-~g--~vLL~rRs~~k~~~----pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~ 77 (187)
..++++++++.. .| .|||.+ ++.+-| -|-|++| .|-...||+ +..||+||..||+||.++-
T Consensus 2 pK~SAGvLlYR~~aG~v~VLLvH--PGGPFWa~kD~GAWSIP-KGey~~gEd---------p~~AArREf~EE~Gi~vdG 69 (161)
T COG4119 2 PKLSAGVLLYRARAGVVDVLLVH--PGGPFWAGKDDGAWSIP-KGEYTGGED---------PWLAARREFSEEIGICVDG 69 (161)
T ss_pred CcccceeEEEEecCCCEEEEEec--CCCCccccCCCCccccc-ccccCCCcC---------HHHHHHHHhhhhhceeecC
Confidence 356788888874 45 455553 332223 5889998 588888888 7999999999999999964
Q ss_pred CCCCCeeeeeEEEEEccCCCCcceeEEEEEEEE----------------ec---CCcCCCCccccceEEEecHHHHHHHH
Q 029829 78 VPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI----------------VR---DVSVNPNPDEVAEYKYVNREQLKELL 138 (187)
Q Consensus 78 ~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~----------------~~---~~~~~~~~~Ev~~~~Wv~~~el~~~l 138 (187)
.. ..+|. |.++.+. ++.+|.+ .. .+.. ..--||..+-|+++++....+
T Consensus 70 P~----~~lG~--~kQ~GGK------vVta~~veae~Dva~~rSntFe~eWPprSG~M-~~FPEVDRagWF~l~eAr~Ki 136 (161)
T COG4119 70 PR----IDLGS--LKQSGGK------VVTAFGVEAELDVADARSNTFELEWPPRSGKM-RKFPEVDRAGWFPLAEARTKI 136 (161)
T ss_pred ch----hhhhh--hccCCCc------EEEEEeeeeeeehhhhhcceeeeecCCCCCcc-ccCcccccccceecHHHHhHH
Confidence 32 23443 3433221 1122221 11 0111 112489999999999999877
Q ss_pred Hhc
Q 029829 139 RKA 141 (187)
Q Consensus 139 ~~~ 141 (187)
.++
T Consensus 137 l~g 139 (161)
T COG4119 137 LKG 139 (161)
T ss_pred hhc
Confidence 764
No 94
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=98.19 E-value=3e-05 Score=60.49 Aligned_cols=136 Identities=14% Similarity=0.186 Sum_probs=85.0
Q ss_pred eEEEEEEEeCCCeEEEEEecCCC--CCCCCceeeccccCCCCCCChhhhhhhhc-HHHHHHHHHHHHhCCCccCCCCCCe
Q 029829 7 NIFSILGFVSYSVMSGQQRSGTK--VTFPLVWTNTCCSHPLYRESELIEENALG-VRNAAQRKLLDELGICAEDVPVDEF 83 (187)
Q Consensus 7 ~av~v~i~~~~g~vLL~rRs~~k--~~~pG~W~~~~gGhve~gEs~~~~~~~~~-~~~Aa~REl~EE~Gl~~~~~~~~~l 83 (187)
.+-.|+|.|.+ +||+-+|-.+. .-.-|.+++-+|||+..++.. .+.+. +.-.+.||+.||+++.-+..+ .+
T Consensus 62 ~IpYvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA---~s~~evLk~n~~REleEEv~vseqd~q--~~ 135 (203)
T COG4112 62 VIPYVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGA---TSREEVLKGNLERELEEEVDVSEQDLQ--EL 135 (203)
T ss_pred cccEEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCc---ccHHHHHccchHHHHHHHhCcCHHHhh--hh
Confidence 34456676655 99999986432 235688899899999988752 11211 223378999999999876533 45
Q ss_pred eeeeEEEEEccCCCCcceeEEEEEEEEecC-CcCCCCccccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHH
Q 029829 84 TPLGRILYKAPSDGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDN 160 (187)
Q Consensus 84 ~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~-~~~~~~~~Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~ 160 (187)
.++|-+ ....+..+.-.+-.+|..+.. .++..-..+.-+++|+.++++.++- ..+--|.+.+++.
T Consensus 136 e~lGlI---Ndd~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~y---------~~~EtWS~~~~~~ 201 (203)
T COG4112 136 EFLGLI---NDDTNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKFY---------GVMETWSKISAAV 201 (203)
T ss_pred eeeeee---cCCCcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHHHh---------hhhHHHHHHHHHH
Confidence 667643 222223331123345555432 2233344677899999999999842 2677788876653
No 95
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.06 E-value=1.2e-05 Score=58.70 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=53.7
Q ss_pred EEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEE
Q 029829 11 ILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRIL 90 (187)
Q Consensus 11 v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~ 90 (187)
+++++.+|++||+||..+. .|.|+|++|.-- .+ ++. ..+++.+.+.+..|+.+.... .++.+.
T Consensus 2 ~~i~~~~~~~Ll~kRp~~g-ll~GLwefP~~e-~~-~~~---------~~~~l~~~~~~~~~~~~~~~~-----~~~~v~ 64 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKG-LLAGLWEFPLIE-SD-EED---------DEEELEEWLEEQLGLSIRSVE-----PLGTVK 64 (114)
T ss_dssp EEEEETTSEEEEEE--SSS-TTTT-EE--EEE--S-SS----------CHHHHHHHTCCSSS-EEEE-S------SEEEE
T ss_pred EEEEEeCCEEEEEECCCCC-hhhcCcccCEeC-cc-CCC---------CHHHHHHHHHHHcCCChhhhe-----ecCcEE
Confidence 5778889999999998654 699999999521 12 222 145555666677887665432 345544
Q ss_pred EEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHH
Q 029829 91 YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKEL 137 (187)
Q Consensus 91 y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~ 137 (187)
..... . +-..++|.+........ +-.+.+|++++++.++
T Consensus 65 H~fSH---~--~~~~~~~~~~~~~~~~~---~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 65 HVFSH---R--RWTIHVYEVEVSADPPA---EPEEGQWVSLEELDQY 103 (114)
T ss_dssp EE-SS---E--EEEEEEEEEEEE-SS-------TTEEEEEGGGGGGS
T ss_pred EEccc---e--EEEEEEEEEEecCCCCC---CCCCcEEEEHHHHhhC
Confidence 43321 0 11335555554322111 5688999999998753
No 96
>PF14443 DBC1: DBC1
Probab=96.20 E-value=0.038 Score=41.54 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=49.7
Q ss_pred eEEEEEecCCCCCCCCceeecc-ccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCC
Q 029829 19 VMSGQQRSGTKVTFPLVWTNTC-CSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDG 97 (187)
Q Consensus 19 ~vLL~rRs~~k~~~pG~W~~~~-gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~ 97 (187)
++|+.+|...----+|-|+.+. ||.+..+.+. +..+|+|=+++-|||++....- ...+-.++|..+..+
T Consensus 9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~--------LI~TAiR~~K~~tgiDLS~Ct~--W~rf~Ei~Y~R~~~~ 78 (126)
T PF14443_consen 9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSV--------LIRTAIRTCKALTGIDLSNCTQ--WYRFAEIHYYRPGSD 78 (126)
T ss_pred eeEEeecCceEEecCCcCCcccCCCCCCCCcHH--------HHHHHHHHHHHHhccchhhcCc--cceeeEEEEecCCCC
Confidence 4566665542223379998774 4555554443 8999999999999999976432 223335677766544
Q ss_pred CcceeEEEEEEEE
Q 029829 98 KWGEHELDYLLFI 110 (187)
Q Consensus 98 ~~~e~e~~~vf~~ 110 (187)
+...+.-+.|+++
T Consensus 79 ~~~~~~EivVlFl 91 (126)
T PF14443_consen 79 GFPSHQEIVVLFL 91 (126)
T ss_pred CCCceeEEEEEEe
Confidence 4443333334444
No 97
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=95.81 E-value=0.023 Score=46.66 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=31.6
Q ss_pred eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhC
Q 029829 19 VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 72 (187)
Q Consensus 19 ~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~G 72 (187)
+++..||+. -|.|.+| ||.+++||. +-.+.+||+.||.=
T Consensus 140 e~vavkr~d-----~~~WAiP-GGmvdpGE~---------vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPD-----NGEWAIP-GGMVDPGEK---------VSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCC-----CCcccCC-CCcCCchhh---------hhHHHHHHHHHHHH
Confidence 455677764 4788887 699999998 88999999999963
No 98
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=95.44 E-value=0.084 Score=42.39 Aligned_cols=118 Identities=14% Similarity=-0.062 Sum_probs=63.1
Q ss_pred CCCCceEEEEEEEeCCC--eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCC
Q 029829 2 HKCVPNIFSILGFVSYS--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP 79 (187)
Q Consensus 2 ~g~~h~av~v~i~~~~g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~ 79 (187)
+|+++.+-+|+++...+ .|||.|...+. +.+| ||.+.+||+ -.+...|.|.+-+|..-....
T Consensus 40 ~GmRrsVe~Vllvh~h~~PHvLLLq~~~~~------fkLP-Gg~l~~gE~---------e~~gLkrkL~~~l~~~~~~~~ 103 (188)
T PF13869_consen 40 EGMRRSVEGVLLVHEHGHPHVLLLQIGNTF------FKLP-GGRLRPGED---------EIEGLKRKLTEKLSPEDGVDP 103 (188)
T ss_dssp HSSEEEEEEEEEEEETTEEEEEEEEETTTE------EE-S-EEE--TT-----------HHHHHHHHHHHHHB-SSSS--
T ss_pred hCCceEEEEEEEEecCCCcEEEEEeccCcc------ccCC-ccEeCCCCC---------hhHHHHHHHHHHcCCCcCCCC
Confidence 58888888888988877 57777766543 3333 489999999 589999999999998753221
Q ss_pred CCCe-eeeeEEEEEccC---------CCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHH
Q 029829 80 VDEF-TPLGRILYKAPS---------DGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE 136 (187)
Q Consensus 80 ~~~l-~~~~~~~y~~~~---------~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~ 136 (187)
...+ .++|.+ |+... ...+.-.|...+|++.......+.-..-....-+++=|+.+
T Consensus 104 ~w~vge~l~~W-wRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~F~VPkn~kL~AvPLFeLyd 169 (188)
T PF13869_consen 104 DWEVGECLGTW-WRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCLFAVPKNMKLVAVPLFELYD 169 (188)
T ss_dssp --EEEEEEEEE-EESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEEEEEETTSEEEEEEHHHHTT
T ss_pred CcEecCEEEEE-eCCCCCCCCCCCCCcccCChhheeEEEEEecCCCceEecCCCCeEEeecHhhhhc
Confidence 1111 344443 33221 11222245667777765322111111224556677777664
No 99
>PRK10880 adenine DNA glycosylase; Provisional
Probab=95.37 E-value=0.23 Score=43.60 Aligned_cols=33 Identities=9% Similarity=-0.118 Sum_probs=25.0
Q ss_pred ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeec
Q 029829 6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNT 39 (187)
Q Consensus 6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~ 39 (187)
.+...++++..+|++||+||.... .|.|+|++|
T Consensus 230 ~~~~~~~~~~~~~~~~l~~r~~~g-l~~gl~~fP 262 (350)
T PRK10880 230 ERTGYFLLLQHGDEVWLEQRPPSG-LWGGLFCFP 262 (350)
T ss_pred eEEEEEEEEEECCEEEEEECCccC-hhhccccCC
Confidence 345555555667899999998654 689999998
No 100
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=89.36 E-value=4.6 Score=34.94 Aligned_cols=124 Identities=14% Similarity=0.070 Sum_probs=68.4
Q ss_pred CCceEEEEEEEeCCC--eEEEEE-ecC---CC--CCCCCceee------------------ccccCCCCCCChhhhhhhh
Q 029829 4 CVPNIFSILGFVSYS--VMSGQQ-RSG---TK--VTFPLVWTN------------------TCCSHPLYRESELIEENAL 57 (187)
Q Consensus 4 ~~h~av~v~i~~~~g--~vLL~r-Rs~---~k--~~~pG~W~~------------------~~gGhve~gEs~~~~~~~~ 57 (187)
.-|-+|.|+++|.-- -||+|| |+. ++ ..++|.-.. .|.|.|+..=
T Consensus 227 k~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~--------- 297 (405)
T KOG4432|consen 227 KCHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPF--------- 297 (405)
T ss_pred hCCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCc---------
Confidence 358899999999533 366655 542 11 112332110 1234444432
Q ss_pred cHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEe-c--C--CcCCCCccccceEEEecHH
Q 029829 58 GVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIV-R--D--VSVNPNPDEVAEYKYVNRE 132 (187)
Q Consensus 58 ~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~-~--~--~~~~~~~~Ev~~~~Wv~~~ 132 (187)
+..+-|.||..||.|.++..-++ .... .|....+ ..+.....|...+. . . +.-..+.+|..++.-++++
T Consensus 298 s~~e~a~~e~veecGYdlp~~~~---k~va--~y~sGVG-~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle 371 (405)
T KOG4432|consen 298 SDPEKAARESVEECGYDLPEDSF---KLVA--KYISGVG-QSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLE 371 (405)
T ss_pred ccHHHHHHHHHHHhCCCCCHHHH---hhhh--eeecccC-CcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechh
Confidence 26788999999999998864322 2221 2332221 11222222222221 1 1 1223456789999999999
Q ss_pred HHHHHHHhcc
Q 029829 133 QLKELLRKAD 142 (187)
Q Consensus 133 el~~~l~~~~ 142 (187)
++.++...++
T Consensus 372 ~a~~~~~q~~ 381 (405)
T KOG4432|consen 372 DAPSLYRQHN 381 (405)
T ss_pred hhhHHHhccC
Confidence 9999998863
No 101
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=86.99 E-value=1.7 Score=34.48 Aligned_cols=57 Identities=16% Similarity=0.039 Sum_probs=40.8
Q ss_pred CCCCceEEEEEEEeCCC--eEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCC
Q 029829 2 HKCVPNIFSILGFVSYS--VMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGIC 74 (187)
Q Consensus 2 ~g~~h~av~v~i~~~~g--~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~ 74 (187)
.|++..+-+|+|+.... .|||.|-..+-.-.|| |.+.+||+ -.+...|-+.|-+|-.
T Consensus 66 ~gmRrsvegvlivheH~lPHvLLLQig~tf~KLPG-------G~L~pGE~---------e~~Gl~r~l~~~Lgr~ 124 (221)
T KOG1689|consen 66 EGMRRSVEGVLIVHEHNLPHVLLLQIGNTFFKLPG-------GRLRPGED---------EADGLKRLLTESLGRS 124 (221)
T ss_pred hhhhheeeeeEEEeecCCCeEEEEeeCCEEEecCC-------CccCCCcc---------hhHHHHHHHHHHhccc
Confidence 46777788888887653 6666554333223454 99999998 4788999999999933
No 102
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=83.41 E-value=6.3 Score=33.14 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=57.6
Q ss_pred EEEEEecCCCCCCCCceeeccccCC-CCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCCC
Q 029829 20 MSGQQRSGTKVTFPLVWTNTCCSHP-LYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGK 98 (187)
Q Consensus 20 vLL~rRs~~k~~~pG~W~~~~gGhv-e~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~~ 98 (187)
+||.+|.-++ -+.|-+|- +.. +.+++ +..+|.|.|..-.|=.....-+ .-.++|...+..+-...
T Consensus 141 yLLV~~k~g~---~s~w~fP~-~~~s~~~~~---------lr~~ae~~Lk~~~ge~~~t~fv-gnaP~g~~~~q~pr~~~ 206 (263)
T KOG4548|consen 141 YLLVKRKFGK---SSVWIFPN-RQFSSSEKT---------LRGHAERDLKVLSGENKSTWFV-GNAPFGHTPLQSPREMT 206 (263)
T ss_pred EEEEeeccCc---cceeeCCC-cccCCccch---------HHHHHHHHHHHHhcchhhhhee-ccCccccccccCccccc
Confidence 6667665333 24566654 444 67777 8999999999988866543211 11345543344332211
Q ss_pred cceeEEEEEEEEec---CCcCCCCccccceEEEecHHHHHHHHHh
Q 029829 99 WGEHELDYLLFIVR---DVSVNPNPDEVAEYKYVNREQLKELLRK 140 (187)
Q Consensus 99 ~~e~e~~~vf~~~~---~~~~~~~~~Ev~~~~Wv~~~el~~~l~~ 140 (187)
.-...-..+|+... .... ..-.-..++.||+.+++.+.+..
T Consensus 207 ~e~~~~sk~ff~k~~lv~~~~-~kn~n~edfvWvTkdel~e~l~~ 250 (263)
T KOG4548|consen 207 TEEPVSSKVFFFKASLVANSN-QKNQNKEDFVWVTKDELGEKLPK 250 (263)
T ss_pred ccccccceeEEeeeeeccccc-hhcccccceEEechHHHhhhcch
Confidence 11111123444432 1111 11234567999999999987654
No 103
>PRK13910 DNA glycosylase MutY; Provisional
Probab=78.30 E-value=3.6 Score=35.26 Aligned_cols=29 Identities=0% Similarity=-0.150 Sum_probs=21.1
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeec
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNT 39 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~ 39 (187)
...+++.+ +|++||+||+ +..|.|+|++|
T Consensus 188 ~~~~~~~~-~~~~ll~kr~--~~l~~gl~~fP 216 (289)
T PRK13910 188 RYLGVVIQ-NNQIALEKIE--QKLYLGMHHFP 216 (289)
T ss_pred EEEEEEEE-CCEEEEEECC--CchhcccccCC
Confidence 33344444 6799999995 34799999998
No 104
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=78.23 E-value=9.3 Score=33.10 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=35.0
Q ss_pred cccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEec
Q 029829 40 CCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVR 112 (187)
Q Consensus 40 ~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~ 112 (187)
|||-++..-+ +.+-|..|+.||.|.++..- ++.++ +.|....... -...++|.+..
T Consensus 84 c~g~idke~s---------~~eia~eev~eecgy~v~~d---~l~hv--~~~~~g~~~s---~sa~~l~y~ei 139 (405)
T KOG4432|consen 84 CAGLIDKELS---------PREIASEEVAEECGYRVDPD---DLIHV--ITFVVGAHQS---GSAQHLYYAEI 139 (405)
T ss_pred eccccccccC---------HHHHhHHHHHHHhCCcCChh---HceEE--EEEEeccccC---ccchheeeeec
Confidence 5677766544 89999999999999999754 44444 3344332211 11335666654
No 105
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=66.32 E-value=4.6 Score=35.20 Aligned_cols=82 Identities=20% Similarity=0.213 Sum_probs=46.7
Q ss_pred eeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEE--ec-
Q 029829 36 WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI--VR- 112 (187)
Q Consensus 36 W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~--~~- 112 (187)
|.+|- |++...|+ =..+|.||+.||+|.+...-. -+ +..-..+-. .....+|+. ..
T Consensus 108 w~fpr-gK~~kdes---------d~~caiReV~eetgfD~skql-------~~--~e~Ie~nI~--dq~~~~fIi~gvs~ 166 (348)
T KOG2937|consen 108 WSFPR-GKISKDES---------DSDCAIREVTEETGFDYSKQL-------QD--NEGIETNIR--DQLVRLFIINGVSE 166 (348)
T ss_pred ccccC-ccccccch---------hhhcchhcccchhhcCHHHHh-------cc--ccCcccchh--hceeeeeeecccee
Confidence 55654 78877776 379999999999999987521 11 111000111 112233333 11
Q ss_pred CCcCCC-CccccceEEEecHHHHHHHH
Q 029829 113 DVSVNP-NPDEVAEYKYVNREQLKELL 138 (187)
Q Consensus 113 ~~~~~~-~~~Ev~~~~Wv~~~el~~~l 138 (187)
+....+ -..|++...|..++++....
T Consensus 167 d~~f~~~v~~eis~ihW~~l~~l~~t~ 193 (348)
T KOG2937|consen 167 DTNFNPRVRKEISKIHWHYLDHLVPTD 193 (348)
T ss_pred eeecchhhhccccceeeeehhhhcccc
Confidence 111111 13689999999999995443
No 106
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=65.33 E-value=8.9 Score=19.97 Aligned_cols=21 Identities=10% Similarity=-0.368 Sum_probs=16.8
Q ss_pred CCCceEEEEEEEeCCCeEEEE
Q 029829 3 KCVPNIFSILGFVSYSVMSGQ 23 (187)
Q Consensus 3 g~~h~av~v~i~~~~g~vLL~ 23 (187)
|+.+..|..+..|++|+|++.
T Consensus 1 gL~~n~I~~i~~D~~G~lWig 21 (24)
T PF07494_consen 1 GLPNNNIYSIYEDSDGNLWIG 21 (24)
T ss_dssp TBSSSCEEEEEE-TTSCEEEE
T ss_pred CCCCCeEEEEEEcCCcCEEEE
Confidence 566778899999999999985
No 107
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=62.94 E-value=7.4 Score=23.36 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=11.5
Q ss_pred ccCCCCCCChhhhhhhhcHHHHHHHHHHHHh
Q 029829 41 CSHPLYRESELIEENALGVRNAAQRKLLDEL 71 (187)
Q Consensus 41 gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~ 71 (187)
||-..||.- +..++.||+-||+
T Consensus 15 ggLasPgPv---------p~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPV---------PSSTALKELIEEL 36 (43)
T ss_dssp --------S----------HHHHHHHHHHHH
T ss_pred cccCCCCCC---------CchHHHHHHHHHH
Confidence 566667766 6788999999996
No 108
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=49.83 E-value=9.4 Score=39.22 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=38.1
Q ss_pred eEEEEEecCCCCCCCCc---eeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHhCCCccC
Q 029829 19 VMSGQQRSGTKVTFPLV---WTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAED 77 (187)
Q Consensus 19 ~vLL~rRs~~k~~~pG~---W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~Gl~~~~ 77 (187)
-|||||++..++.|... =.|+ -|+=|.|=+. |+++..+..+||+++|.|+.++.
T Consensus 239 avllqrk~~ArRvYAtilnartNT-DGfKEqGvTf----P~G~~Q~qLi~e~Yse~Gl~P~s 295 (2376)
T KOG1202|consen 239 AVLLQRKSLARRVYATILNARTNT-DGFKEQGVTF----PSGDMQEQLIRETYSEAGLNPES 295 (2376)
T ss_pred EEEEehhHHHHHHHHHhhccccCC-CchhhcCccC----CCcHHHHHHHHHHHHhcCCCccc
Confidence 37788877665555422 2233 3666666653 66679999999999999999874
No 109
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=48.23 E-value=9.2 Score=33.58 Aligned_cols=34 Identities=9% Similarity=0.016 Sum_probs=26.9
Q ss_pred ceEEEEEEEeCCCeEEEEEecCCCCCCCCceeecc
Q 029829 6 PNIFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTC 40 (187)
Q Consensus 6 h~av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~ 40 (187)
.+....++.+.+|.+++.||...+ .+.|+|++|.
T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~~~g-l~~gl~~fP~ 268 (342)
T COG1194 235 RRFAAFLILNRDGEVLLEKRPEKG-LLGGLWCFPQ 268 (342)
T ss_pred hheeeEEEEccCcchhhhhCcccC-ceeccccccc
Confidence 446667777888999999988654 6899999984
No 110
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=29.79 E-value=98 Score=25.85 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=31.9
Q ss_pred cceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHHH
Q 029829 123 VAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWW 166 (187)
Q Consensus 123 v~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 166 (187)
-..+.||..+|+.+++..+ .++..=-|--..|..+||...+
T Consensus 192 ~~KHYwV~~dEvdKLlr~G---egWL~~HPerelI~rRYL~~~~ 232 (245)
T PF12623_consen 192 DAKHYWVGDDEVDKLLRAG---EGWLATHPERELITRRYLKRRR 232 (245)
T ss_pred CCceeeeCHHHHHHHHHcC---CChhhcCccHHHHHHHHHHhhH
Confidence 3789999999999999987 3445556666788899986543
No 111
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=25.17 E-value=1.5e+02 Score=20.06 Aligned_cols=40 Identities=20% Similarity=0.090 Sum_probs=27.7
Q ss_pred ccceEEEecHHHHHHHHHhccCCCCCcccChhHHHHHHHHHHHH
Q 029829 122 EVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKW 165 (187)
Q Consensus 122 Ev~~~~Wv~~~el~~~l~~~~~~~~~~~~~p~~~~~~~~~l~~~ 165 (187)
+-++..|++..||.+.|.+. .+..++-.....+-+.|.+.
T Consensus 19 ~~Ee~e~lsa~~If~~L~k~----~~~~l~~~~~~~FGriL~~~ 58 (73)
T PF12990_consen 19 EGEEGEWLSAAEIFERLQKK----SPAALRGSNPNHFGRILQKL 58 (73)
T ss_pred CCccceeecHHHHHHHHHHh----CccccccCCHHHHHHHHHHc
Confidence 35788999999999999886 34555554455555555444
No 112
>KOG4485 consensus Uncharacterized conserved protein, contains ankyrin and FN3 repeats [General function prediction only]
Probab=23.75 E-value=2.8e+02 Score=25.79 Aligned_cols=63 Identities=21% Similarity=0.302 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCccCCCCCCeeeeeEEEEEccCCCCcceeEEEEEEEEecCCcCCCCccccceEEEecHHHHHHHHH
Q 029829 60 RNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLR 139 (187)
Q Consensus 60 ~~Aa~REl~EE~Gl~~~~~~~~~l~~~~~~~y~~~~~~~~~e~e~~~vf~~~~~~~~~~~~~Ev~~~~Wv~~~el~~~l~ 139 (187)
..||. -+.|-+||+- +|.++|..-.+. .-|+++.+.....++.+ -.+...+|++...+.....
T Consensus 129 inAac-qMQeALGI~d----------iGhl~YkPL~da-----ng~~~L~cVq~ie~qka-~qiin~RWlP~nKL~kK~g 191 (724)
T KOG4485|consen 129 INAAC-QMQEALGIRD----------IGHLHYKPLIDA-----NGCFFLLCVQFIEPQKA-FQIINLRWLPFNKLLKKKG 191 (724)
T ss_pred HHHHH-HHHHhhCccc----------ccceeeeeeecC-----CceEEEEEeeecccccc-eeeeeeeeeehHHHHHhhc
Confidence 34444 4889999965 566777643221 12344444332222222 2477889999999987764
No 113
>PF06089 Asparaginase_II: L-asparaginase II; InterPro: IPR010349 This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (3.5.1.1 from EC) catalyses the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source [].
Probab=22.10 E-value=1.1e+02 Score=26.82 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=38.7
Q ss_pred EEEEEEeCCCeEEEEEecCCCCCCCC-------------------------ceeeccccCCCCCCChhhhhhhhcHHHHH
Q 029829 9 FSILGFVSYSVMSGQQRSGTKVTFPL-------------------------VWTNTCCSHPLYRESELIEENALGVRNAA 63 (187)
Q Consensus 9 v~v~i~~~~g~vLL~rRs~~k~~~pG-------------------------~W~~~~gGhve~gEs~~~~~~~~~~~~Aa 63 (187)
.+++++|.+|+++..--.....+||- ...+.|++| .||. .-..+
T Consensus 16 G~~vVvd~~G~v~~~~Gd~~~~~f~RSa~KP~QAlp~l~sGa~e~~~l~~~elAl~cASH--~Ge~---------~H~~~ 84 (324)
T PF06089_consen 16 GHAVVVDADGRVLASAGDPDRPTFPRSAAKPFQALPLLESGAAEAFGLTDEELALACASH--SGEP---------EHVEA 84 (324)
T ss_pred EEEEEECCCCCEEEEecCCCCceehhhhccHHHHHHHHHcCchhhcCCCHHHHHHHhhcc--cChH---------HHHHH
Confidence 46677888999888654433333332 122234455 5665 67788
Q ss_pred HHHHHHHhCCCccCC
Q 029829 64 QRKLLDELGICAEDV 78 (187)
Q Consensus 64 ~REl~EE~Gl~~~~~ 78 (187)
++.+.+.+|++...+
T Consensus 85 v~~~L~k~gL~e~~L 99 (324)
T PF06089_consen 85 VRSMLAKAGLSEEDL 99 (324)
T ss_pred HHHHHHHcCCCHHHc
Confidence 899999999998764
No 114
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=20.25 E-value=4.2e+02 Score=20.54 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=25.3
Q ss_pred EEEEEEEeCCCeEEEEEecCCCCCCCCceeeccccCCCCCCChhhhhhhhcHHHHHHHHHHHHh
Q 029829 8 IFSILGFVSYSVMSGQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDEL 71 (187)
Q Consensus 8 av~v~i~~~~g~vLL~rRs~~k~~~pG~W~~~~gGhve~gEs~~~~~~~~~~~~Aa~REl~EE~ 71 (187)
...+++.|.+||+|=.--|+ .|+--.++ +++++..|+.|-+
T Consensus 108 GSmlvimD~kGRiLtaslSP--------------s~~iHk~~---------ie~~v~~E~~~AL 148 (154)
T PF11576_consen 108 GSMLVIMDSKGRILTASLSP--------------SHVIHKKS---------IEDAVKKEMIEAL 148 (154)
T ss_dssp -EEEEEEETTS-EEEEEEE----------------TTTS------------HHHHHHHHHHHHH
T ss_pred ccEEEEEcCCCcEEeeccCc--------------hhhhcccc---------HHHHHHHHHHHHH
Confidence 45677889999999764442 34555666 8999999987653
Done!