BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029830
MRRVQHVLKTVSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRV
FDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYT
KKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKSEVEESETETSSSSSSDEE
NDEVPVS

High Scoring Gene Products

Symbol, full name Information P value
AT2G30695 protein from Arabidopsis thaliana 5.3e-24

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029830
        (187 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006279 - symbol:AT2G30695 "AT2G30695" speci...   275  5.3e-24   1


>TAIR|locus:505006279 [details] [associations]
            symbol:AT2G30695 "AT2G30695" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0006457
            "protein folding" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0015031 "protein transport" evidence=IEA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0006399 "tRNA metabolic process"
            evidence=RCA] [GO:0009073 "aromatic amino acid family biosynthetic
            process" evidence=RCA] [GO:0009658 "chloroplast organization"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
            [GO:0019288 "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
            targeting to chloroplast" evidence=RCA] InterPro:IPR008881
            Pfam:PF05697 GO:GO:0009570 GO:GO:0006457 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0015031 EMBL:AC002340
            Gene3D:3.30.70.1050 SUPFAM:SSF102735 EMBL:AF411777 EMBL:AY094029
            IPI:IPI00527481 RefSeq:NP_565704.1 RefSeq:NP_973568.1
            UniGene:At.12260 ProteinModelPortal:Q945Q5 SMR:Q945Q5 STRING:Q945Q5
            PaxDb:Q945Q5 PRIDE:Q945Q5 EnsemblPlants:AT2G30695.1
            EnsemblPlants:AT2G30695.2 GeneID:817620 KEGG:ath:AT2G30695
            TAIR:At2g30695 eggNOG:NOG300820 HOGENOM:HOG000006261
            InParanoid:Q945Q5 OMA:VIKKVIN PhylomeDB:Q945Q5
            ProtClustDB:CLSN2688582 ArrayExpress:Q945Q5 Genevestigator:Q945Q5
            Uniprot:Q945Q5
        Length = 199

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 60/143 (41%), Positives = 88/143 (61%)

Query:    11 VSAVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLAR 70
             V A  S VE S  +   LIT    K+  E+ +E K+ V+V  +G+ TQ VF+ V   +  
Sbjct:    54 VCAAPSDVETSSKDESVLIT----KVETETSNEVKVHVQV--SGEKTQTVFNHVFEKMVA 107

Query:    71 SAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKDK 130
             +A PIPGFRR KGGKT  +P+D L++ILG  +V K V+++++ S + DY K+E L V  K
Sbjct:   108 AAQPIPGFRRVKGGKTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDYVKQEDLKV-GK 166

Query:   131 KVTTTQKAEELRKSFYPGNEFGF 153
             ++T  Q  E+L ++F PG  F F
Sbjct:   167 ELTVVQSYEDLEETFEPGESFSF 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      187       153   0.00081  105 3  11 23  0.38    32
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  490 (52 KB)
  Total size of DFA:  104 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.51u 0.08s 16.59t   Elapsed:  00:00:01
  Total cpu time:  16.51u 0.08s 16.59t   Elapsed:  00:00:01
  Start:  Thu May  9 20:05:46 2013   End:  Thu May  9 20:05:47 2013

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