Query 029830
Match_columns 187
No_of_seqs 126 out of 1060
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p9y_A Trigger factor, TF; alp 100.0 6.4E-31 2.2E-35 202.8 15.2 114 33-161 3-116 (121)
2 2d3o_1 Trigger factor, TF; rib 100.0 3.2E-31 1.1E-35 201.9 6.9 112 34-161 1-112 (112)
3 2nsc_A Trigger factor, TF; cha 100.0 6.7E-30 2.3E-34 193.7 8.2 109 34-161 1-109 (109)
4 1t11_A Trigger factor, TF; hel 99.9 5.9E-27 2E-31 210.7 16.8 131 33-178 3-139 (392)
5 1w26_A Trigger factor, TF; cha 99.9 1.1E-26 3.6E-31 211.1 12.0 129 34-177 1-135 (432)
6 3gty_X Trigger factor, TF; cha 99.9 3.2E-22 1.1E-26 181.8 7.0 118 34-170 1-124 (433)
7 2dzj_A Synaptic glycoprotein S 60.4 13 0.00045 25.8 4.6 38 30-67 7-45 (88)
8 2kdb_A Homocysteine-responsive 43.3 17 0.00059 26.0 2.9 47 15-67 11-57 (99)
9 4hcn_B Polyubiquitin, ubiquiti 42.1 30 0.001 24.0 4.0 51 14-66 2-53 (98)
10 4a20_A Ubiquitin-like protein 40.9 31 0.0011 24.6 4.0 39 27-65 13-51 (98)
11 4dbg_A Ranbp-type and C3HC4-ty 35.0 46 0.0016 24.3 4.1 37 30-66 21-57 (105)
12 3kg0_A Snoab; polyketide, anth 29.2 28 0.00094 25.8 2.1 35 44-80 24-58 (128)
13 2kl8_A OR15; structural genomi 26.6 96 0.0033 21.5 4.4 36 39-75 35-70 (85)
14 1wx8_A Riken cDNA 4931431F19; 26.0 76 0.0026 21.5 3.9 31 32-65 16-46 (96)
15 2lxa_A Ubiquitin-like protein 23.9 42 0.0014 23.3 2.2 33 33-65 1-33 (87)
16 1v2y_A 3300001G02RIK protein; 23.7 1.3E+02 0.0045 21.6 4.9 33 32-64 6-40 (105)
17 3onr_A Protein transport prote 21.1 55 0.0019 22.7 2.2 27 53-79 14-40 (72)
18 1wgd_A Homocysteine-responsive 20.5 84 0.0029 21.2 3.2 36 32-67 6-41 (93)
19 1uh6_A Ubiquitin-like 5; beta- 20.3 90 0.0031 22.5 3.4 32 32-65 27-58 (100)
No 1
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=99.97 E-value=6.4e-31 Score=202.76 Aligned_cols=114 Identities=24% Similarity=0.384 Sum_probs=108.5
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 029830 33 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV 112 (187)
Q Consensus 33 ~M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li 112 (187)
.|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||++||+++||. .|++++++++|
T Consensus 3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i 74 (121)
T 1p9y_A 3 HMQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRK--G----KVPMNIVAQRYGA-SVRQDVLGDLM 74 (121)
T ss_dssp -CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CSCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-cCCcCC--C----CCCHHHHHHHHHH-HHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999 999999 9 9999999999997 69999999999
Q ss_pred HHHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEeec
Q 029830 113 RSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 161 (187)
Q Consensus 113 ~~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~~ 161 (187)
+.+|.+|+++++|+|++ +|.++ ...+++|++|+|+++|+|.+
T Consensus 75 ~~~~~~ai~e~~l~~~~-~P~i~------~~~~~~~~~~~f~~~~ev~P 116 (121)
T 1p9y_A 75 SRNFIDAIIKEKINPAG-APTYV------PGEYKLGEDFTYSVEFEVYP 116 (121)
T ss_dssp HHHHHHHHHHTTCCCEE-EEEEE------ECCCCSSSCEEEEEEEECCC
T ss_pred HHHHHHHHHHcCCCCCC-CCccc------ccccCCCCCEEEEEEEEEcC
Confidence 99999999999999999 99997 24678899999999999975
No 2
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=99.97 E-value=3.2e-31 Score=201.85 Aligned_cols=112 Identities=24% Similarity=0.455 Sum_probs=95.9
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029830 34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 113 (187)
Q Consensus 34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~ 113 (187)
|++++++ ++++++|+|+||+++++.+++++|++++++++ |||||| | |||+++|+++||.+.|++++++++|+
T Consensus 1 M~v~~e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~~~v~~ea~~~~i~ 72 (112)
T 2d3o_1 1 MAELISK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFRP--G----KAPRKVIENRVGKGYVESQVRDRLLE 72 (112)
T ss_dssp ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSC-BTTBCT--T----CCCSTTHHHHTTTTSSHHHHHHHHHH
T ss_pred CceEEEc-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCcCC--C----CCCHHHHHHHhCHHHHHHHHHHHHHH
Confidence 8899999 99999999999999999999999999999999 999999 9 99999999999954799999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEeec
Q 029830 114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 161 (187)
Q Consensus 114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~~ 161 (187)
.+|.+|+++++|+|++ +|.++ .. +++|++|+|+++|+|.+
T Consensus 73 ~~~~~ai~e~~l~~~~-~P~i~------~~-~~~~~~~~f~~~~ev~P 112 (112)
T 2d3o_1 73 THYSQGLRELGLNLVD-ATVDP------QD-VQSGQAFEFTVKGETYP 112 (112)
T ss_dssp HHHHHHHHHSCCCCCC-EECCC------CC-CCSSSCCCEEEEEC---
T ss_pred HHHHHHHHHcCCCCCC-CCccc------cc-ccCCCCEEEEEEEEecC
Confidence 9999999999999999 99997 24 78899999999999864
No 3
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=99.96 E-value=6.7e-30 Score=193.69 Aligned_cols=109 Identities=18% Similarity=0.325 Sum_probs=103.3
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029830 34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 113 (187)
Q Consensus 34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~ 113 (187)
|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||+++|+++||. .|++++++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i~ 72 (109)
T 2nsc_A 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD 72 (109)
T ss_dssp CEEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CCCHHHHHHHHGG-GHHHHHHHHHHT
T ss_pred CceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 9999999999997 699999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEeec
Q 029830 114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 161 (187)
Q Consensus 114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~~ 161 (187)
. |.+|+++++| ++ +|.++. ..++ |++|+|+++|+|.+
T Consensus 73 ~-~~~ai~e~~l--~~-~P~i~~------~~~~-~~~~~f~~~~ev~P 109 (109)
T 2nsc_A 73 L-IPDTLKDRKL--IL-SPIVTE------RELK-DVTARVVVEVHEEP 109 (109)
T ss_dssp T-HHHHTTTSCC--SS-CCCCCC------CCCC-CCCCCCCCCCCCCC
T ss_pred H-HHHHHHHcCc--CC-CCcccc------cccc-CCCEEEEEEEEecC
Confidence 9 9999999999 88 999872 4577 99999999999864
No 4
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=99.95 E-value=5.9e-27 Score=210.66 Aligned_cols=131 Identities=21% Similarity=0.339 Sum_probs=118.3
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 029830 33 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV 112 (187)
Q Consensus 33 ~M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li 112 (187)
.|+++++++++++++|+|+||+++++.+++++|++++++++ |||||| | |||++||+++||. .|++++++++|
T Consensus 3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~yG~-~v~~ea~~~~~ 74 (392)
T 1t11_A 3 HMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRK--G----KVPMKMVAKMYGK-AVRQDVLGEVM 74 (392)
T ss_dssp CCEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCS--S----CCCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccCC-CCCCCC--C----CCCHHHHHHHHhH-HHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999 999999 9 9999999999996 69999999999
Q ss_pred HHHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEee------cCCcccccccccCCCCCc
Q 029830 113 RSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETSSSSSSD 178 (187)
Q Consensus 113 ~~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~------~~e~~~~~~~~~~~~~~~ 178 (187)
+.+|.+|+++++|+|++ +|.++. ..|++|++|+|+++|+|. .+.++++++....++..|
T Consensus 75 ~~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~Pev~l~~y~~l~v~~~~~~Vtde~ 139 (392)
T 1t11_A 75 QRHFIEAIVKEKINPAG-APTFAP------VEIGEGKDLVFTATFEVYPEVELKGLENIAVEKPAAEVTDAD 139 (392)
T ss_dssp HHHHHHHHHHTTCCBSS-CCEEEE------EECCTTSCEEEEEEEEBCCCCCCTTCTTCEEESSCC---CTH
T ss_pred HHHHHHHHHHcCCCcCC-CCCccc------cccCCCCCEEEEEEecCCCceecCCCCceEEEeCCCCcCHHH
Confidence 99999999999999999 999872 467889999999999987 466777777777666544
No 5
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=99.94 E-value=1.1e-26 Score=211.10 Aligned_cols=129 Identities=24% Similarity=0.366 Sum_probs=118.1
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029830 34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 113 (187)
Q Consensus 34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~ 113 (187)
|+++++++++++++|+|+||+++++.+++++|++++++++ |||||| | |||++||+++||. .|++++++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~~~yG~-~v~~ea~~~~~~ 72 (432)
T 1w26_A 1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGFRK--G----KVPMNIVAQRYGA-SVRQDVLGDLMS 72 (432)
T ss_dssp CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTT-CGGGCC--S----SSCHHHHHHHHCT-TTHHHHHHHHHH
T ss_pred CceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 9999999999997 699999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEee------cCCcccccccccCCCCC
Q 029830 114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETSSSSSS 177 (187)
Q Consensus 114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~------~~e~~~~~~~~~~~~~~ 177 (187)
.+|.+|+++++|+|++ +|.++. ..|.+|++|+|+++|+|. .|.++++++....++..
T Consensus 73 ~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~~v~Pev~l~~y~~l~v~~~~~eVtde 135 (432)
T 1w26_A 73 RNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDA 135 (432)
T ss_dssp HHHHHHHHHSCCCEEE-EEEEEE------CCCCTTSCEEEEEEEEECCCCCCCCTTTCBCCEEECCCCHH
T ss_pred HHHHHHHHhcCCCCCC-CCCccc------cccCCCCcEEEEEEeccCCCeecCCCCceEEEecCCCcCHH
Confidence 9999999999999999 999872 467889999999999987 45677777776665543
No 6
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=99.86 E-value=3.2e-22 Score=181.84 Aligned_cols=118 Identities=17% Similarity=0.268 Sum_probs=101.3
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 029830 34 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 113 (187)
Q Consensus 34 M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk~kG~k~~KvP~~viek~yG~e~I~~eai~~li~ 113 (187)
|++++++++++.+.|+|+||+++|+.+++++|++++++++ |||||| | |||++||+++||. .+++++++.+++
T Consensus 1 M~v~~~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ev~~~l~~ 72 (433)
T 3gty_X 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD 72 (433)
T ss_dssp CEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCC-CCC--C--C----CCCSHHHHTTSTT-HHHHHHHHHHHT
T ss_pred CceEEEEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCC-CCCCCC--C----CCcHHHHHHHhhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 9999999999999 699999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhccCCCCcEEEEEEEEee------cCCccccccc
Q 029830 114 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETE 170 (187)
Q Consensus 114 ~~~~eAike~~l~pv~~~P~i~~~fe~l~~~~~~g~~~~ft~~veV~------~~e~~~~~~~ 170 (187)
.++. ++.++ +|++ +|.++. ..++ |++|+|+++|+|. .|.++++++.
T Consensus 73 ~~~~-~~~~e--~~~~-~P~i~~------~~~~-~~~~~f~~~vev~Pev~l~~y~~l~v~~~ 124 (433)
T 3gty_X 73 LIPD-TLKDR--KLIL-SPIVTE------RELK-DVTARVVVEVHEEPEVRIGDISKIEVEKV 124 (433)
T ss_dssp TSTT-TSSSS--CBSS-CCEEEE------EEEC-SSCEEEEEEEEBCCEEECCCGGGSEEEEE
T ss_pred HHHH-HHHhc--CCCC-CCCcCc------cccc-CCCEEEEEEEEecCCcccCCcCcceeeec
Confidence 9874 55555 6899 999862 3343 6689999999997 4556666554
No 7
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.37 E-value=13 Score=25.83 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=28.0
Q ss_pred cccCcEEEEEecCCceEEEEE-EeCHHHHHHHHHHHHHH
Q 029830 30 TVKDAKIVVESQDEDKIQVRV-DLTGDATQRVFDKVLTN 67 (187)
Q Consensus 30 ~~~~M~Vtve~l~~~~~~l~V-~V~~~~v~~~~~kal~~ 67 (187)
++..|+|++..+.+.....++ +|++...=..+.+.+.+
T Consensus 7 ~~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~ 45 (88)
T 2dzj_A 7 GMKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTK 45 (88)
T ss_dssp CCCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHH
T ss_pred ceEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHH
Confidence 466799999999887766677 78876665666665555
No 8
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=43.30 E-value=17 Score=25.97 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=24.1
Q ss_pred cCCCccccCCccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHH
Q 029830 15 DSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTN 67 (187)
Q Consensus 15 ~sg~~~~~~~~~~~~~~~~M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~ 67 (187)
+||-+++..+. ..|+|++..+.+....++|++++...=..+.+.+..
T Consensus 11 ~~~~~~~~~~~------~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~ 57 (99)
T 2kdb_A 11 SSGRENLYFQG------HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSN 57 (99)
T ss_dssp ------------------CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHH
T ss_pred cccccCCCCCC------CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHH
Confidence 57777666543 469999998887755567777776555555555544
No 9
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=42.06 E-value=30 Score=23.96 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=20.6
Q ss_pred ccCCCccccCCccccc-cccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHH
Q 029830 14 VDSGVEVSITEPEDLI-TVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLT 66 (187)
Q Consensus 14 ~~sg~~~~~~~~~~~~-~~~~M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~ 66 (187)
.||+++-......... .-..|+|.++...+... .|+|+....=..+.+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~m~I~Vk~~~g~~~--~l~v~~~~TV~~LK~~I~ 53 (98)
T 4hcn_B 2 GSSHHHHHHSSGENLYFQGRPMQIFVKTLTGKTI--TLEVESSDTIDNVKSKIQ 53 (98)
T ss_dssp --------------------CCEEEEEETTCCEE--EEECCTTCBHHHHHHHHH
T ss_pred CccccccCCCCCCCCCCCCCeEEEEEEeCCCCEE--EEEECCCCcHHHHHHHHH
Confidence 4555554444333333 44569999999987765 456666544344444443
No 10
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=40.92 E-value=31 Score=24.55 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=27.3
Q ss_pred ccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 029830 27 DLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 65 (187)
Q Consensus 27 ~~~~~~~M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal 65 (187)
|-+....|+|+++.+.+....+++++++...=..+.+.+
T Consensus 13 ~~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I 51 (98)
T 4a20_A 13 DKMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHL 51 (98)
T ss_dssp -----CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHH
T ss_pred ccCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHH
Confidence 333557799999999999888888888776655555555
No 11
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=34.95 E-value=46 Score=24.35 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=28.3
Q ss_pred cccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHH
Q 029830 30 TVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLT 66 (187)
Q Consensus 30 ~~~~M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~ 66 (187)
....|+|+++++.++...++++|.+...=..+...+.
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~ 57 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVF 57 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHH
T ss_pred CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHH
Confidence 3466999999999988999999998766555554443
No 12
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=29.18 E-value=28 Score=25.78 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=27.2
Q ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 029830 44 DKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRR 80 (187)
Q Consensus 44 ~~~~l~V~V~~~~v~~~~~kal~~lak~ak~IPGFRk 80 (187)
..+...++|.++ +.+|.+++.++...++..|||+-
T Consensus 24 i~via~~~V~pg--~~~f~~~~~~~~~~~~~~pGfi~ 58 (128)
T 3kg0_A 24 VTFVNRFTVHGA--PAEFESVFARTAAFFARQPGFVR 58 (128)
T ss_dssp EEEEEEEEECSC--HHHHHHHHHHHHHHHHTSTTEEE
T ss_pred EEEEEEEEeCCC--HHHHHHHHHHHHHHHhcCCCccE
Confidence 445667888887 88899999998887644999954
No 13
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=26.56 E-value=96 Score=21.50 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=32.3
Q ss_pred EecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCC
Q 029830 39 ESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPI 75 (187)
Q Consensus 39 e~l~~~~~~l~V~V~~~~v~~~~~kal~~lak~ak~I 75 (187)
-.+.++..++.|+=-++.+.+.+.+....+++..+ |
T Consensus 35 ytldgndleiritgvpeqvrkelakeaerlakefn-i 70 (85)
T 2kl8_A 35 YTLDGNDLEIRITGVPEQVRKELAKEAERLAKEFN-I 70 (85)
T ss_dssp EEECSSCEEEEEESCCHHHHHHHHHHHHHHHHHTC-C
T ss_pred EEecCCeeEEEEecChHHHHHHHHHHHHHHHHhcC-e
Confidence 35788899999999999999999999999999988 6
No 14
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.96 E-value=76 Score=21.47 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=18.1
Q ss_pred cCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 029830 32 KDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 65 (187)
Q Consensus 32 ~~M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal 65 (187)
..|+|.++.. +... +++|+....=..+.+.+
T Consensus 16 ~~m~i~Vk~~-g~~~--~~~v~~~~TV~~LK~~I 46 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCH--EFFLAENSNVRRFKKQI 46 (96)
T ss_dssp CEEEEEEECS-SSEE--EEEEETTCCHHHHHHHH
T ss_pred CcEEEEEEEC-CeEE--EEEECCCCCHHHHHHHH
Confidence 5699999988 5554 45555544333333333
No 15
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=23.95 E-value=42 Score=23.27 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=25.7
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 029830 33 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 65 (187)
Q Consensus 33 ~M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal 65 (187)
.|+|+++.+.+....++|++++.+.=..+.+.+
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I 33 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHL 33 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHH
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHH
Confidence 389999999999999998887766655555544
No 16
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.66 E-value=1.3e+02 Score=21.63 Aligned_cols=33 Identities=12% Similarity=0.074 Sum_probs=21.1
Q ss_pred cCcEEEEEecCCceEEEEEEeC--HHHHHHHHHHH
Q 029830 32 KDAKIVVESQDEDKIQVRVDLT--GDATQRVFDKV 64 (187)
Q Consensus 32 ~~M~Vtve~l~~~~~~l~V~V~--~~~v~~~~~ka 64 (187)
..|+|++..+.+....|.|.-. -.+++++++..
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~ 40 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRY 40 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHH
Confidence 4599999999998877655421 23344444443
No 17
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=21.12 E-value=55 Score=22.66 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 029830 53 TGDATQRVFDKVLTNLARSAPPIPGFR 79 (187)
Q Consensus 53 ~~~~v~~~~~kal~~lak~ak~IPGFR 79 (187)
++.-|+.|+++++.+.+++++.|.||.
T Consensus 14 S~~S~edAi~nAi~~AskTl~ni~~~e 40 (72)
T 3onr_A 14 SPTSWEQAAAEAVQRARDSVDDIRVAR 40 (72)
T ss_dssp ESSCHHHHHHHHHHHHHHHCSCCCEEE
T ss_pred CCCCHHHHHHHHHHHHHhcccCCeEEE
Confidence 356799999999999999996699984
No 18
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.53 E-value=84 Score=21.22 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=24.4
Q ss_pred cCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHH
Q 029830 32 KDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTN 67 (187)
Q Consensus 32 ~~M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal~~ 67 (187)
..|+++++...+....++|+++....=..+.+.+..
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~ 41 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSR 41 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHH
Confidence 569999999887766677777665554445544443
No 19
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.33 E-value=90 Score=22.49 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=20.0
Q ss_pred cCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 029830 32 KDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 65 (187)
Q Consensus 32 ~~M~Vtve~l~~~~~~l~V~V~~~~v~~~~~kal 65 (187)
..|+|+++.+.+.... |+|++.+.=..+.+.+
T Consensus 27 ~mm~I~VKtl~Gk~i~--lev~p~dTV~~lK~~I 58 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVR--VKCNTDDTIGDLKKLI 58 (100)
T ss_dssp CEEEEEEECSSSSCEE--EEEETTSBHHHHHHHH
T ss_pred CeEEEEEECCCCCEEE--EEeCCCCcHHHHHHHH
Confidence 5599999999876555 5565554433343333
Done!