BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029831
MASSSLTSALTSQSKSPFYPQQLSQLPSSPLFSFARSLKTFRTNAKSLLLHKKNSNSVSL
TVKAQTLDFSGSFFEGGGFGSDDDPTSVPPGSVGTATAIEDKEEPQCPPGLRQYETMMVL
RPDMSEDERLALTQNCLLLGVACMWRYSIEGLFHWPTASGRETKLGSPTLTWMVSISSSP
TSLNQSQ

High Scoring Gene Products

Symbol, full name Information P value
AT1G64510 protein from Arabidopsis thaliana 2.0e-17

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029831
        (187 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2019489 - symbol:AT1G64510 species:3702 "Arabi...   213  2.0e-17   1


>TAIR|locus:2019489 [details] [associations]
            symbol:AT1G64510 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412 "translation"
            evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0019843 "rRNA binding" evidence=IEA] [GO:0042254 "ribosome
            biogenesis" evidence=ISS] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
            [GO:0010027 "thylakoid membrane organization" evidence=RCA]
            InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250 PROSITE:PS01048
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006412 EMBL:AC009519
            GO:GO:0005840 GO:GO:0003735 GO:GO:0009535 GO:GO:0019843
            Gene3D:3.30.70.60 InterPro:IPR014717 EMBL:AY072344 EMBL:AY114581
            EMBL:AY085527 IPI:IPI00518160 RefSeq:NP_176632.1 UniGene:At.23432
            UniGene:At.27560 ProteinModelPortal:Q8VY91 SMR:Q8VY91 STRING:Q8VY91
            PaxDb:Q8VY91 PRIDE:Q8VY91 EnsemblPlants:AT1G64510.1 GeneID:842759
            KEGG:ath:AT1G64510 GeneFarm:32 TAIR:At1g64510 eggNOG:NOG279078
            HOGENOM:HOG000154193 InParanoid:Q8VY91 OMA:QYETMAV PhylomeDB:Q8VY91
            ProtClustDB:CLSN2679309 Genevestigator:Q8VY91 GermOnline:AT1G64510
            SUPFAM:SSF54995 Uniprot:Q8VY91
        Length = 207

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 49/100 (49%), Positives = 59/100 (59%)

Query:    35 ARSLKTFRTNAKSLLLHKKNSNSVSLTVKAQTLXXXXXXXXXXXXXXXXXPTSVPPGSVG 94
             + SL+ F + +K +    +  +     VK+Q L                 PTS P GS G
Sbjct:    27 SHSLRPFISKSKPMCASIQKRDGSQFVVKSQALDFSGTFFEGGFGSDDD-PTS-PSGS-G 83

Query:    95 TATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQ 134
              +TA+EDK EPQCPPGLRQYETM VLRPDMSEDERL LTQ
Sbjct:    84 VSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQ 123


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.126   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      187       137   0.00091  102 3  11 23  0.46    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  134 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.67u 0.09s 13.76t   Elapsed:  00:00:02
  Total cpu time:  13.67u 0.09s 13.76t   Elapsed:  00:00:02
  Start:  Thu May  9 20:06:29 2013   End:  Thu May  9 20:06:31 2013

Back to top